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The enduring advantages of the SLOW5 file format for raw nanopore sequencing data
Gamaarachchi, H., Jenner, S., Samarakoon, H., Ferguson, J. M., Deveson, I. W.
10.1101/2025.06.30.662478 — Posted: 2025-07-04 — Discussion: 2025-10-30  GigaScience
Genomic and epidemiologic characteristics of SARS-CoV-2 persistent infections in California, January 2021 - July 2023
Bell, J. M., Elder, J., Ryder, R., Smith, E. A., Scribner, M., Gilliam, S., Borthwick, D., Crumpler, M., Skarbinski, J., Morales, C., Wadford, D. A.
10.1101/2025.07.14.664650 — Posted: 2025-07-16 — Discussion: 2025-10-30  
Nucleosome Positioning Shapes Cryptic Antisense Transcription
Kok, J. Y., Harvey, Z. H., Axelsson, E., Berger, F.
10.1101/2025.07.14.664753 — Posted: 2025-07-18 — Discussion: 2025-10-30  Review Commons
EssSubgraph improves performance and generalizability of mammalian essential gene prediction with large networks
wen, h., Carpenter, S., McGinnis, K., Nelson, A., Smith, K., hong, t.
10.1101/2025.07.21.665218 — Posted: 2025-07-25 — Discussion: 2025-10-30  GigaScience
Redox Dyshomeostasis Links Renal and Neuronal Dysfunction in Drosophila Models of Gaucher and Parkinson's Disease
Hull, A. J., Atilano, M. L., Kinghorn, K. J.
10.1101/2025.08.06.668868 — Posted: 2025-08-09 — Discussion: 2025-10-30  eLife
GFFx: A Rust-based suite of utilities for ultra-fast genomic feature extraction
Chen, B., Dongya, W., Zhang, G.
10.1101/2025.08.08.669426 — Posted: 2025-08-12 — Discussion: 2025-10-30  GigaScience
Cryo-EM Reveals Regulatory Mechanisms Governing Substrate Selection and Activation of Human LONP1
Mindrebo, J. T., Alexandrescu, L., Baker, J. R., Wang, G., Lander, G. C.
10.1101/2025.09.05.674599 — Posted: 2025-09-06 — Discussion: 2025-10-30  eLife
CryoDataBot: a pipeline to curate cryoEM datasets for AI-driven structural biology
Xu, Q., Wu, L., Rebelo, M., Feng, S., Yu, X., Farheen, F., Kihara, D., Zhou, Z. H.
10.1101/2025.09.09.675185 — Posted: 2025-09-10 — Discussion: 2025-10-30  GigaScience
CHIP disrupts monocyte-endothelial interactions across multiple tissues to promote vascular inflammation in humans
Parker, A. C., Heimlich, J. B., Ahmad, A., Bailin, S. S., Van Amburg, J. C., Vlasschaert, C., Koethe, J. R., Wanjalla, C. N., Bick, A. G.
10.1101/2024.02.20.24303046 — Posted: 2024-02-21 — Discussion: 2025-10-30  eLife
Artificial Intelligence uncovers Evolutionarily Conserved Intracellular Allosteric Modulators of GPCR-Gα interface.
Mohanty, S. K., Mittal, A., Gaur, A., Solanki, S., Kumar, S., Duari, S., Arora, S., Gautam, V., Dixit, N. K., Ghosh, T. S., Sengupta, D., Gupta, S. K., Murugan, N. A., Ahuja, G.
10.1101/2023.02.14.528587 — Posted: 2023-02-15 — Discussion: 2025-10-29  eLife

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