bioRxiv/medRxiv TRiP Review Activity

266 Reviews — All Partners — Systems Biology

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Combinatorial Detection of Conserved Alteration Patterns for Identifying Cancer Subnetworks
Hodzic, E., Shrestha, R., Zhu, K., Cheng, K., Collins, C. C., Sahinalp, S. C.
10.1101/369850 — Posted: 2018-07-16 — Discussion: 2022-01-23  GigaScience
TuBA: Tunable Biclustering Algorithm Reveals Clinically Relevant Tumor Transcriptional Profiles in Breast Cancer
Singh, A., Bhanot, G., Khiabanian, H.
10.1101/245712 — Posted: 2018-01-25 — Discussion: 2022-01-23  GigaScience
Trade-offs in adaptation to glycolysis and gluconeogenesis result in a preferential flux direction in central metabolism
Schink, S. J., Christodoulou, D., Mukherjee, A., Athaide, E., Sauer, U., Basan, M.
10.1101/2021.05.07.443112 — Posted: 2021-05-08 — Discussion: 2022-01-21  EMBO Press
fastBMA: Scalable Network Inference and Transitive Reduction
Hung, L.-H., Shi, K., Wu, M., Young, W. C., Raftery, A., Yeung, K. Y.
10.1101/099036 — Posted: 2017-01-06 — Discussion: 2022-01-13  GigaScience
Patient-specific Boolean models of signaling networks guide personalized treatments
Montagud, A., Beal, J., Tobalina, L., Traynard, P., Subramanian, V., Szalai, B., Alföldi, R., Puskas, L., Valencia, A., Barillot, E., Saez-Rodriguez, J., Calzone, L.
10.1101/2021.07.28.454126 — Posted: 2021-07-29 — Discussion: 2021-12-24  eLife
Quantifying growth perturbations over the fattening period in swine via mathematical modelling
Revilla, M., Lenoir, G., Flatres-Grall, L., Munoz-Tamayo, R., Friggens, N. C.
10.1101/2020.10.22.349985 — Posted: 2020-10-23 — Discussion: 2021-12-20  Peer Community In
A Genome-Scale TF-DNA Interaction Network of Transcriptional Regulation of Arabidopsis Primary and Specialized Metabolism
Tang, M., Li, B., Zhou, X., Bolt, T., Li, J. J., Cruz, N., Gaudinier, A., Ngo, R., Clark-Wiest, C., Kliebenstein, D., Brady, S.
10.1101/2021.05.13.443927 — Posted: 2021-05-14 — Discussion: 2021-12-16  EMBO Press
Defining hierarchical protein interaction networks from spectral analysis of bacterial proteomes
Zaydman, M. A., Little, A., Haro, F., Aksianiuk, V., Buchser, W., DiAntonio, A., Gordon, J. I., Milbrandt, J., Raman, A.
10.1101/2021.09.28.462107 — Posted: 2021-09-28 — Discussion: 2021-12-03  eLife
Genome-scale metabolic modeling reveals SARS-CoV-2-induced host metabolic reprogramming and identifies metabolic antiviral targets
Cheng, K., Riva, L., Sinha, S., Pal, L. R., Nair, N. U., Martin-Sancho, L., Chanda, S. K., Ruppin, E.
10.1101/2021.01.27.428543 — Posted: 2021-01-28 — Discussion: 2021-12-01  EMBO Press
Analysis of Multisensory-Motor Integration in Olfactory Navigation of Silkmoth, Bombyx mori, using Virtual Reality System
Yamada, M., Ohashi, H., Hosoda, K., Kurabayashi, D., Shigaki, S.
10.1101/2021.09.14.460318 — Posted: 2021-09-16 — Discussion: 2021-11-01  eLife

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