bioRxiv/medRxiv TRiP Review Activity

251 Reviews — All Partners — Systems Biology

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Monocyte-derived transcriptome signature indicates antibody-dependent cellular 1 phagocytosis as the primary mechanism of vaccine-induced protection against HIV-1
Shangguan, S., Ehrenberg, P. K., Geretz, A., Yum, L., Kundu, G., May, K., Fourati, S., Nganou-Makamdop, k., Williams, L. D., Sawant, S., Lewitus, E., Pitisuttithum, P., Nitayaphan, S., Chariyalertsak, S., Rerks-Ngarm, S., Rolland, M., Douek, D. C., Gilbert, P., Tomaras, G. D., Michael, N. L., Vasan, S., Thomas, R.
10.1101/2021.05.12.443737 — Posted: 2021-05-15 — Discussion: 2021-09-06  eLife
Single-cell transcriptomics reveals immune response of intestinal cell types to viral infection
Triana, S., Stanifer, M. L., Shahraz, M., Mukenhirn, M., Kee, C., Ordonez Rueda, D., Paulsen, M., Benes, V., Boulant, S., Alexandrov, T.
10.1101/2020.08.19.255893 — Posted: 2020-08-19 — Discussion: 2021-08-13  EMBO Press
Tunable phenotypic variability through an autoregulatory alternative sigma factor circuit
Schwall, C. P., Loman, T., Martins, B. M. C., Cortijo, S., Villava, C., Kusmartsev, V., Livesey, T., Saez, T., Locke, J. C. W.
10.1101/2020.06.18.158790 — Posted: 2020-06-18 — Discussion: 2021-08-13  EMBO Press
Identification of Covalent Modifications Regulating Immune Signaling Complex Composition and Phenotype
Frauenstein, A., Ebner, S., Sinha, A., Kshiti, P., Swatek, K., Hornburg, D., Mann, M., Meissner, F.
10.1101/2020.11.16.384750 — Posted: 2020-11-17 — Discussion: 2021-08-13  EMBO Press
TNF stimulation primarily modulates transcriptional burst size of NF-κB-regulated genes
Bass, V. L., Wong, V. C., Bullock, M. E., Gaudet, S., Miller-Jensen, K.
10.1101/2020.11.16.384297 — Posted: 2020-11-17 — Discussion: 2021-08-13  EMBO Press
Behavioral fingerprints predict insecticide and anthelmintic mode of action
McDermott-Rouse, A., Minga, E., Barlow, I., Feriani, L., Harlow, P. H., Flemming, A. J., Brown, A.
10.1101/2021.01.27.428391 — Posted: 2021-01-28 — Discussion: 2021-07-17  EMBO Press
JSTA: joint cell segmentation and cell type annotation for spatial transcriptomics
Littman, R., Hemminger, Z., Foreman, R., Arneson, D., Zhang, G., Gomez-Pinilla, F., Yang, X., Wollman, R.
10.1101/2020.09.18.304147 — Posted: 2020-09-20 — Discussion: 2021-07-17  EMBO Press
Two different cell-cycle processes determine the timing of cell division in Escherichia coli
Colin, A., Micali, G., Faure, L., Cosentino Lagomarsino, M., van Teeffelen, S.
10.1101/2021.03.08.434443 — Posted: 2021-03-09 — Discussion: 2021-07-06  eLife
Dynamically Linking Influenza Virus Infection with Lung Injury to Predict Disease Severity
Myers, M. A., Smith, A. P., Lane, L. C., Moquin, D. J., Vogel, P., Woolard, S., Smith, A. M.
10.1101/555276 — Posted: 2019-12-05 — Discussion: 2021-06-18  eLife
Unsupervised machine learning reveals key immune cell subsets in COVID-19, rhinovirus infection, and cancer therapy
Barone, S. M., Paul, A. G. A., Muehling, L. M., Lannigan, J. A., Kwok, W. W., Turner, R. B., Woodfolk, J. A., Irish, J. M.
10.1101/2020.07.31.190454 — Posted: 2020-08-01 — Discussion: 2021-05-26  eLife

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