bioRxiv/medRxiv TRiP Review Activity

251 Reviews — All Partners — Systems Biology

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A human kinase yeast array for the identification of kinases modulating phosphorylation-dependent protein-protein interactions
Jehle, S., Kunowska, N., Benlasfer, N., Woodsmith, J., Weber, G., Wahl, M. c., Stelzl, U.
10.1101/2021.11.18.469002 — Posted: 2021-11-19 — Discussion: 2022-03-22  EMBO Press
Growth-Rate Dependent And Nutrient-Specific Gene Expression Resource Allocation In Fission Yeast
Kleijn, I. T., Martinez-Segura, A., Bertaux, F., Saint, M., Kramer, H., Shahrezaei, V., Marguerat, S.
10.1101/2021.03.16.435638 — Posted: 2021-03-17 — Discussion: 2022-03-22  EMBO Press
Automated, high-dimensional evaluation of physiological aging and resilience in outbred mice
Chen, Z., Raj, A., Prateek, G. V., Di Francesco, A., Liu, J., Keyes, B. E., Kolumam, G., Jojic, V., Freund, A.
10.1101/2021.08.02.454830 — Posted: 2021-08-04 — Discussion: 2022-03-17  eLife
Major functional bias for mitochondrial complexes in genome-wide CRISPR screens
Rahman, M., Billmann, M., Costanzo, M., Aregger, M., Tong, A. H. Y., Chan, K., Ward, H. N., Brown, K. R., Andrews, B. J., Boone, C., Moffat, J., Myers, C. L.
10.1101/2020.08.31.273730 — Posted: 2020-08-31 — Discussion: 2022-02-19  EMBO Press
Quantification of circadian interactions and protein abundance defines a mechanism for operational stability of the circadian clock
Bagnall, J. S., Koch, A. A., Smyllie, N. J., Begley, N., Adamson, A., Fribourgh, J. L., Spiller, D. G., Meng, Q.-J., Partch, C. L., Strimmer, K., House, T. A., Hastings, M. H., Loudon, A. S. I.
10.1101/2021.08.27.456017 — Posted: 2021-08-28 — Discussion: 2022-02-09  eLife
Combinatorial Detection of Conserved Alteration Patterns for Identifying Cancer Subnetworks
Hodzic, E., Shrestha, R., Zhu, K., Cheng, K., Collins, C. C., Sahinalp, S. C.
10.1101/369850 — Posted: 2018-07-16 — Discussion: 2022-01-23  GigaScience
TuBA: Tunable Biclustering Algorithm Reveals Clinically Relevant Tumor Transcriptional Profiles in Breast Cancer
Singh, A., Bhanot, G., Khiabanian, H.
10.1101/245712 — Posted: 2018-01-25 — Discussion: 2022-01-23  GigaScience
Trade-offs in adaptation to glycolysis and gluconeogenesis result in a preferential flux direction in central metabolism
Schink, S. J., Christodoulou, D., Mukherjee, A., Athaide, E., Sauer, U., Basan, M.
10.1101/2021.05.07.443112 — Posted: 2021-05-08 — Discussion: 2022-01-21  EMBO Press
fastBMA: Scalable Network Inference and Transitive Reduction
Hung, L.-H., Shi, K., Wu, M., Young, W. C., Raftery, A., Yeung, K. Y.
10.1101/099036 — Posted: 2017-01-06 — Discussion: 2022-01-13  GigaScience
Patient-specific Boolean models of signaling networks guide personalized treatments
Montagud, A., Beal, J., Tobalina, L., Traynard, P., Subramanian, V., Szalai, B., Alföldi, R., Puskas, L., Valencia, A., Barillot, E., Saez-Rodriguez, J., Calzone, L.
10.1101/2021.07.28.454126 — Posted: 2021-07-29 — Discussion: 2021-12-24  eLife

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