bioRxiv/medRxiv TRiP Review Activity

266 Reviews — All Partners — Systems Biology

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ChemChaste: Simulating spatially inhomogenous biochemical reaction-diffusion systems for modelling cell-environment feedbacks
Johnson, C. G. M., Fletcher, A. G., soyer, o. s.
10.1101/2021.10.21.465304 — Posted: 2021-10-22 — Discussion: 2023-02-15  GigaScience
Constricted migration contributes to persistent 3D genome structure changes associated with an invasive phenotype in melanoma cells
Golloshi, R., San Martin, R., Das, P., Raines, T. I., Thurston, D. M., Freeman, T. F., McCord, R. P.
10.1101/856583 — Posted: 2019-11-26 — Discussion: 2023-02-14  EMBO Press
Resource allocation accounts for the large variabilityof rate-yield phenotypes across bacterial strains
Baldazzi, V., Ropers, D., Gouze, J.-L., Gedeon, T., de Jong, H.
10.1101/2022.04.27.489666 — Posted: 2022-04-27 — Discussion: 2023-01-25  eLife
Adaptation of bacterial proteome reveals a key role of the cell envelope in starvation survival
Schink, S. J., Ammar, C., Chang, Y.-F., Zimmer, R., Basan, M.
10.1101/2022.05.18.492425 — Posted: 2022-05-18 — Discussion: 2023-01-24  EMBO Press
Co-substrate pools can constrain and regulate pathway fluxes in cell metabolism
West, R., Delattre, H., Noor, E., Feliu, E., Soyer, O. S.
10.1101/2022.09.05.506656 — Posted: 2022-09-06 — Discussion: 2023-01-22  eLife
Evolved bacterial resistance to the chemotherapy gemcitabine modulates its efficacy
Sayin, S., Rosener, B., Li, C. G., Ho, B., Ponomarova, O., Ward, D., Walhout, A. J., Mitchell, A.
10.1101/2022.09.07.506952 — Posted: 2022-09-07 — Discussion: 2022-12-19  eLife
Epithelial-mesenchymal transition is the main driver of intrinsic metabolism in cancer cell lines
Cherkaoui, S., Durot, S., Bradley, J., Critchlow, S., Dubuis, S., Masiero, M. M., Wegmann, R., Snijder, B., Othman, A., Bendtsen, C., Zamboni, N.
10.1101/2021.11.02.466992 — Posted: 2021-11-04 — Discussion: 2022-12-01  EMBO Press
Evolutionary conservation of sequence motifs at sites of protein modification
Dohlman, H., Li, S.
10.1101/2022.09.15.508132 — Posted: 2022-09-17 — Discussion: 2022-12-01  Review Commons
Proteome-wide systems genetics identifies UFMylation as a regulator of skeletal muscle function
Molendijk, J., Blazev, R., Mills, R., Ng, Y.-K., Watt, K. I., Chau, D., Gregorevic, P., Crouch, P. J., Hilton, J. B., Lisowski, L., Zhang, P., Reue, K., Lusis, A. J., Hudson, J. E., James, D. E., Seldin, M. M., Parker, B. L.
10.1101/2022.08.22.504871 — Posted: 2022-08-22 — Discussion: 2022-11-22  eLife
Dynamic human liver proteome atlas reveals functional insights into disease pathways
Mann, M., Niu, L., Geyer, P., Gupta, R., Santos, A., Meier, F., Doll, S., Wewer Albrechtsen, N. J., Klein, S., Ortiz, C., Uschner, F. E., Schierwagen, R., Trebicka, J.
10.1101/2022.01.28.478194 — Posted: 2022-01-31 — Discussion: 2022-11-21  EMBO Press

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