bioRxiv/medRxiv TRiP Review Activity

251 Reviews — All Partners — Systems Biology

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Evolved bacterial resistance to the chemotherapy gemcitabine modulates its efficacy
Sayin, S., Rosener, B., Li, C. G., Ho, B., Ponomarova, O., Ward, D., Walhout, A. J., Mitchell, A.
10.1101/2022.09.07.506952 — Posted: 2022-09-07 — Discussion: 2022-12-19  eLife
Epithelial-mesenchymal transition is the main driver of intrinsic metabolism in cancer cell lines
Cherkaoui, S., Durot, S., Bradley, J., Critchlow, S., Dubuis, S., Masiero, M. M., Wegmann, R., Snijder, B., Othman, A., Bendtsen, C., Zamboni, N.
10.1101/2021.11.02.466992 — Posted: 2021-11-04 — Discussion: 2022-12-01  EMBO Press
Evolutionary conservation of sequence motifs at sites of protein modification
Dohlman, H., Li, S.
10.1101/2022.09.15.508132 — Posted: 2022-09-17 — Discussion: 2022-12-01  Review Commons
Proteome-wide systems genetics identifies UFMylation as a regulator of skeletal muscle function
Molendijk, J., Blazev, R., Mills, R., Ng, Y.-K., Watt, K. I., Chau, D., Gregorevic, P., Crouch, P. J., Hilton, J. B., Lisowski, L., Zhang, P., Reue, K., Lusis, A. J., Hudson, J. E., James, D. E., Seldin, M. M., Parker, B. L.
10.1101/2022.08.22.504871 — Posted: 2022-08-22 — Discussion: 2022-11-22  eLife
Quantifying the phenotypic information in mRNA abundance
Maltz, E. W., Wollman, R.
10.1101/2022.02.23.481668 — Posted: 2022-02-24 — Discussion: 2022-11-21  EMBO Press
Species richness determines C. difficile invasion outcome in synthetic human gut communities
Hromada, S., Clark, R. L., Qian, Y., Watson, L., Safdar, N., Venturelli, O. S.
10.1101/2021.03.23.436677 — Posted: 2021-03-23 — Discussion: 2022-11-21  EMBO Press
Optogenetic actuator/biosensor circuits for large-scale interrogation of ERK dynamics identify sources of MAPK signaling robustness.
Dessauges, C., Mikelson, J., Dobrzynski, M., Jacques, M.-A., Frismantiene, A., Gagliardi, P. A., Khammash, M., Pertz, O.
10.1101/2021.07.27.453955 — Posted: 2021-07-27 — Discussion: 2022-11-21  EMBO Press
Reproducibility in systems biology modelling
Tiwari, K., Kananathan, S., Roberts, M. G., Meyer, J. P., Sharif Shohan, M. U., Xavier, A., Maire, M., Zyoud, A., Men, J., Ng, S., Nguyen, T. V. N., Glont, M., Hermjakob, H., Malik Sheriff, R. S.
10.1101/2020.08.07.239855 — Posted: 2020-08-10 — Discussion: 2022-11-21  EMBO Press
Dynamic human liver proteome atlas reveals functional insights into disease pathways
Mann, M., Niu, L., Geyer, P., Gupta, R., Santos, A., Meier, F., Doll, S., Wewer Albrechtsen, N. J., Klein, S., Ortiz, C., Uschner, F. E., Schierwagen, R., Trebicka, J.
10.1101/2022.01.28.478194 — Posted: 2022-01-31 — Discussion: 2022-11-21  EMBO Press
PhysiPKPD: A pharmacokinetics and pharmacodynamics module for PhysiCell
Bergman, D. R., Marazzi, L., Chowkwale, M., Maheshvare M, D., Bidanta, S., Mapder, T., Li, J.
10.1101/2022.09.12.507681 — Posted: 2022-09-15 — Discussion: 2022-11-10  Gigabyte

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