bioRxiv/medRxiv TRiP Review Activity

261 Reviews — All Partners — Systems Biology

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Combined measurements of proteome and cell turnover reveal the influences of tissue context and pathological aging on protein and organelle lifetimes
Hasper, J., Welle, K. A., Hryhorenko, J., Ghaemmaghami, S., Buchwalter, A.
10.1101/2022.04.24.488979 — Posted: 2022-04-24 — Discussion: 2023-04-20  EMBO Press
Analysis of context-specific KRAS-effectors (sub)complexes in Caco-2 cells
Kiel, C., Ternet, C., Catozzi, S., Junk, P., Oliviero, G., Sevrin, T., Wynne, K.
10.1101/2022.08.15.503960 — Posted: 2022-08-15 — Discussion: 2023-04-11  EMBO Press
Predictive nonlinear modeling of malignant myelopoiesis and tyrosine kinase inhibitor therapy
Rodriguez, J. D., Iniguez, A., Jena, N., Tata, P., Liu, J., Lander, A. D., Lowengrub, J., Van Etten, R.
10.1101/2022.10.11.511822 — Posted: 2022-10-14 — Discussion: 2023-03-18  eLife
Mechanistic model of MAPK signaling reveals how allostery and rewiring contribute to drug resistance
Froehlich, F., Gerosa, L., Muhlich, J. L., Sorger, P. K.
10.1101/2022.02.17.480899 — Posted: 2022-02-18 — Discussion: 2023-02-17  EMBO Press
An unbiased pathway analysis (UPA) designed for multi-omics inference of cell signaling pathways
Vaparanta, K., Merilahti, J. A. M., Ojala, V. K., Elenius, K.
10.1101/2022.02.05.479228 — Posted: 2022-02-06 — Discussion: 2023-02-16  eLife
ChemChaste: Simulating spatially inhomogenous biochemical reaction-diffusion systems for modelling cell-environment feedbacks
Johnson, C. G. M., Fletcher, A. G., soyer, o. s.
10.1101/2021.10.21.465304 — Posted: 2021-10-22 — Discussion: 2023-02-15  GigaScience
Constricted migration contributes to persistent 3D genome structure changes associated with an invasive phenotype in melanoma cells
Golloshi, R., San Martin, R., Das, P., Raines, T. I., Thurston, D. M., Freeman, T. F., McCord, R. P.
10.1101/856583 — Posted: 2019-11-26 — Discussion: 2023-02-14  EMBO Press
Resource allocation accounts for the large variabilityof rate-yield phenotypes across bacterial strains
Baldazzi, V., Ropers, D., Gouze, J.-L., Gedeon, T., de Jong, H.
10.1101/2022.04.27.489666 — Posted: 2022-04-27 — Discussion: 2023-01-25  eLife
Adaptation of bacterial proteome reveals a key role of the cell envelope in starvation survival
Schink, S. J., Ammar, C., Chang, Y.-F., Zimmer, R., Basan, M.
10.1101/2022.05.18.492425 — Posted: 2022-05-18 — Discussion: 2023-01-24  EMBO Press
Co-substrate pools can constrain and regulate pathway fluxes in cell metabolism
West, R., Delattre, H., Noor, E., Feliu, E., Soyer, O. S.
10.1101/2022.09.05.506656 — Posted: 2022-09-06 — Discussion: 2023-01-22  eLife

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