Channel: 4D Nucleome

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

426 Articles

SAVER: Gene expression recovery for UMI-based single cell RNA sequencing

Huang, M., Wang, J., Torre, E., Dueck, H., Shaffer, S., Bonasio, R., Murray, J., Raj, A., Li, M., Zhang, N. R.

10.1101/138677 — Posted: 2018-03-08

Cohesin Loss Eliminates All Loop Domains, Leading To Links Among Superenhancers And Downregulation Of Nearby Genes

Rao, S., Huang, S.-C., Glenn St. Hilaire, B., Engreitz, J. M., Perez, E. M., Kieffer-Kwon, K.-R., Sanborn, A. L., Johnstone, S. E., Bochkov, I. D., Huang, X., Shamim, M. S., Omer, A. D., Bernstein, B. E., Casellas, R., Lander, E. S., Lieberman Aiden, E.

10.1101/139782 — Posted: 2017-05-18

Static And Dynamic DNA Loops Form AP-1 Bound Activation Hubs During Macrophage Development

Phanstiel, D. H., Van Bortle, K., Spacek, D. V., Hess, G. T., Saad Shamim, M., Machol, I., Love, M. I., Lieberman Aiden, E., Bassik, M. C., Snyder, M. P.

10.1101/142026 — Posted: 2017-05-25

Polycomb-Mediated Chromatin Loops Revealed by a Sub-Kilobase Resolution Chromatin Interaction Map

Eagen, K. P., Lieberman Aiden, E., Kornberg, R. D.

10.1101/099804 — Posted: 2017-01-12

Reconstructing Spatial Transport Distributions In The Nuclear Pore Complex From 2D Images -- How Reliable Is It?

Tu, L.-C., Huisman, M., Chung, Y.-C., Smith, C., Grunwald, D.

10.1101/145110 — Posted: 2017-06-02

Single-molecule FISH in Drosophila muscle reveals location dependent mRNA composition of megaRNPs

Noma, A., Smith, C. S., Huisman, M., Martin, R. M., Moore, M. J., Grunwald, D.

10.1101/156091 — Posted: 2017-06-26

Cell cycle dynamics of chromosomal organisation at single-cell resolution

Nagano, T., Lubling, Y., Varnai, C., Dudley, C., Leung, W., Baran, Y., Mandelson Cohen, N., Wingett, S., Fraser, P., Tanay, A.