Channel:  4D Nucleome

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

451 Articles

Machine learning reveals the diversity of human 3D chromatin contact patterns
Gilbertson, E. N., Brand, C. M., McArthur, E., Rinker, D. C., Kuang, S., Pollard, K. S., Capra, J. A.
10.1101/2023.12.22.573104 — Posted: 2023-12-23
ChIP-DIP: A multiplexed method for mapping hundreds of proteins to DNA uncovers diverse regulatory elements controlling gene expression
Perez, A. A., Goronzy, I. N., Blanco, M. R., Guo, J. K., Guttman, M.
10.1101/2023.12.14.571730 — Posted: 2023-12-18
Electrostatic encoding of genome organization principles within single native nucleosomes
Park, S., Athreya, A., Carrizo, G., Benning, N., Mitchener, M., Bhanu, N., Garcia, B., Zhang, B., Muir, T. W., Pearce, E., Ha, T.
10.1101/2023.12.08.570828 — Posted: 2023-12-09
Understanding how genetically encoded tags affect phase separation by Heterochromatin Protein HP1α
Zhou, Z., Narlikar, G. J.
10.1101/2023.12.04.569983 — Posted: 2023-12-05
Cell type-specific loops linked to RNA polymerase II elongation in human neural differentiation
Titus, K. R., Simandi, Z., Chandrashekar, H., Paquet, D., Phillips-Cremins, J. E.
10.1101/2023.12.04.569731 — Posted: 2023-12-05
ChromaFactor: deconvolution of single-molecule chromatin organization with non-negative matrix factorization
Gunsalus, L. M., Keiser, M. J., Pollard, K. S.
10.1101/2023.11.22.568268 — Posted: 2023-11-22
Genome folding principles revealed in condensin-depleted mitotic chromosomes
Zhao, H., Lin, Y., Lin, E., Liu, F., Shu, L., Jing, D., Wang, B., Wang, M., Shan, F., Zhang, L., Lam, J., Midla, S., Giardine, B., Keller, C., Hardison, R., Blobel, G., Zhang, H.
10.1101/2023.11.09.566494 — Posted: 2023-11-13
Post-transcriptional splicing can occur in a slow-moving zone around the gene
Cote, A. J., O'Farrell, A., Dardani, I., Dunagin, M., Cote, C. J., Wan, Y., Bayatpour, S., Drexler, H. L., Alexander, K. A., Chen, F., Wassie, A. T., Patel, R., Pham, K., Boyden, E. S., Berger, S., Phillips-Cremins, J., Churchman, L. S., Raj, A.
10.1101/2020.04.06.028092 — Posted: 2023-11-13
SuPreMo: a computational tool for streamlining in silico perturbation using sequence-based predictive models
Gjoni, K., Pollard, K. S.
10.1101/2023.11.03.565556 — Posted: 2023-11-05
Nucleolus and centromere TSA-Seq reveals variable localization of heterochromatin in different cell types
Kumar, P., Gholamalamdari, O., Zhang, Y., Zhang, L., Vertii, A., van Schaik, T., Peric-Hupkes, D., Sasaki, T., Gilbert, D. M., van Steensel, B., Ma, J., Kaufman, P. D., Belmont, A. S.
10.1101/2023.10.29.564613 — Posted: 2023-11-01

RSS  Channel RSS