Channel:  Human Cell Atlas

189 Articles

Concerted changes in the pediatric single-cell intestinal ecosystem before and after anti-TNF blockade
Zheng, H. B., Doran, B. A., Kimler, K., Yu, A., Tkachev, V., Niederlova, V., Cribbin, K., Fleming, R., Bratrude, B., Betz, K., Cagnin, L., McGuckin, C., Keskula, P., Albanese, A., Sacta, M., de Sousa Casal, J., van Esch, R., Kwong, A. C., Kummerlowe, C., Taliaferro, F., Fiaschi, N., Kou, B., Coetzee, S., Jalal, S., Yabe, Y., Dobosz, M., Wipperman, M. F., Hamon, S., Kalliolias, G. D., Hooper, A., Lim, W. K., Haxhinasto, S., Wei, Y., Ford, M., Ambartsumyan, L., Suskind, D. L., Lee, D., Deutsch, G., Deng, X., Collen, L. V., Mitsialis, V., Snapper, S. B., Wahbeh, G., Shalek, A. K., Ordovas-Montane
10.1101/2021.09.17.21263540 — Posted: 2025-08-06
Inference of single cell profiles from histology stains with the Single-Cell omics from Histology Analysis Framework (SCHAF)
Comiter, C., Chen, X., Vaishnav, E. D., Kobayashi-Kirschvink, K. J., Ciapmricotti, M., Zhang, K., Murray, J., Monticolo, F., Qi, J., Tanaka, R., Brodowska, S. E., Li, B., Yang, Y., Rodig, S. J., Karatza, A., Quintanal Villalonga, A., Turner, M., Pfaff, K. L., Jane-Valbuena, J., Slyper, M., Waldman, J., Vigneau, S., Wu, J., Blosser, T. R., Segerstolpe, A., Abravanel, D., Wagle, N., Demehri, S., Zhuang, X., Rudin, C. M., Klughammer, J., Rozenblatt-Rosen, O., Stultz, C. M., Shu, J., Regev, A.
10.1101/2023.03.21.533680 — Posted: 2025-06-13
A Single-Cell Atlas Of Human Pediatric Liver Reveals Age-Related Hepatic Gene Signatures
Edgar, R. D., Nakib, D., Camat, D., Chung, S., Lumanto, P., Atif, J., Perciani, C. T., Ma, X. Z., Thoeni, C., Selvakumaran, N., Manuel, J., Sayed, B., Huysentruyt, K., Ricciuto, A., McGilvray, I., Avitzur, Y., Bader, G. D., MacParland, S. A.
10.1101/2025.04.16.649149 — Posted: 2025-04-25
Systematic evaluation of single-cell multimodal data integration for comprehensive human reference atlas.
Acera-Mateos, M., Adiconis, X., Li, J.-K., Marchese, D., Caratu, G., Hon, C.-C., Tiwari, P., Kojima, M., Vieth, B., Murphy, M. A., Simmons, S. K., Lefevre, T., Claes, I., O'Connor, C. L., Menon, R., Otto, E. A., Ando, Y., Vandereyken, K., Kretzler, M., Bitzer, M., Fraenkel, E., Voet, T., Enard, W., Carnici, P., Heyn, H., Levin, J. Z., Mereu, E.
10.1101/2025.03.06.637075 — Posted: 2025-03-06
Singletrome: A method to analyze and enhance the transcriptome with long noncoding RNAs for single cell analysis
RAHMAN, R. U., Ahmad, I., Li, Z., Sparks, R., Saad, A. B., Mullen, A.
10.1101/2022.10.31.514182 — Posted: 2025-03-01
Single-cell transcriptomics reveals the impact of sex and age in the healthy human liver
Rahman, R., Epstein, E. T., Murphy, S., Amir-Zilberstein, L., McCabe, C., Delorey, T., Koene, H., Fernandes, L., Tanabe, K. K., Qadan, M., Ferrone, C., Berger, D. L., Shih, A., Deguine, J., Mullen, A.
10.1101/2025.01.27.635138 — Posted: 2025-01-30
Multi-modal refinement of the human heart atlas during the first gestational trimester
De Bono, C., Xu, Y., Kausar, S., Herbane, M., Humbert, C., Rafatov, S., Missirian, C., Moreno, M., Shi, W., Gitton, Y. I., Lombardini, A., Vanzetta, I., Mazaud-Guittot, S., Chedotal, A., Baudot, A., Zaffran, S., Etchevers, H. C.
10.1101/2024.11.21.624698 — Posted: 2025-01-29
A single cell and spatial genomics atlas of human skin fibroblasts in health and disease
Steele, L., Admane, C., Chakala, K. P., Foster, A., Gopee, N. H., Koplev, S., Mazin, P., Olabi, B., Roberts, K., Tudor, C., Winheim, E., Annusver, K., Correa-Gallegos, D., Forsthuber, A., Francis, L., Frech, S., Ganier, C., Layton, T., Liu, Y., Yuan, H., Gudjonsson, J., Lichtenberger, B. M., Mahil, S., Nanchahal, J., O'Toole, E. A., Plikus, M., Rinkevich, Y., Rognoni, E., Smith, C., Teichmann, S. A., Kasper, M., Lotfollahi, M., Haniffa, M.
10.1101/2024.12.23.629194 — Posted: 2024-12-23
Multimodal learning of transcriptomes and text enables interactive single-cell RNA-seq data exploration with natural-language chats
Schaefer, M., Peneder, P., Malzl, D., Peycheva, M., Burton, J., Hakobyan, A., Sharma, V., Krausgruber, T., Menche, J., Tomazou, E. M., Bock, C.
10.1101/2024.10.15.618501 — Posted: 2024-10-18
An integrated single-cell atlas of the limb skeleton from development through adulthood
Herpelinck, T., Ory, L., Verbraeken, T., Nasello, G., Barzegari, M., Bolander, J., Luyten, F. P., Tylzanowski, P., Geris, L.
10.1101/2022.03.14.484345 — Posted: 2024-09-25

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