Channel:  Human Cell Atlas

196 Articles

CD38⁺ Endothelial Remodeling Defines Spatially Diverse Vasculopathy Programs in Rapidly Advancing Oral Inflammation
Easter, Q. T., Huynh, K., Stolf, C., Xie, J., Matuck, B., Hasuike, A., Alvarado-Martinez, Z., Chen, Z., Aguiar Ribeiro, A., Pareek, N., Azcarate-Peril, A. M., Wu, D., Casarin, R., Ko, K. I., Liu, J., Byrd, K. M.
10.1101/2025.07.29.667333 — Posted: 2025-08-22
A molecular cell atlas of endocrine signalling in human neural organoids
Caporale, N., Matassa, G., Rigoli, M. T., Castaldi, D., Valenti, A., Lessi, M., Stucchi, S., Muda, B., Nagni, R., Mainardi, L., Melon, A., Tintori, A., Bulgheresi, D., Kubacki, M., Trattaro, S., Evangelista, S., Leonards, P., Human Cell Atlas, B. N. O., Villa, C. E., Cheroni, C., Testa, G.
10.1101/2025.08.14.669814 — Posted: 2025-08-15
STARComm Scalably Detects Emergent Modules of Spatial Cell-Cell Communication in Inflammation and Cancer.
Huynh, K., Matuck, B. F., de Souza, D., Zhang, X., Fatobene, G., Soares Junior, L. A. V., Ferraz da Silva, L. F., Rocha, V., Byrd, K., Liu, J.
10.1101/2025.08.07.669133 — Posted: 2025-08-11
Concerted changes in the pediatric single-cell intestinal ecosystem before and after anti-TNF blockade
Zheng, H. B., Doran, B. A., Kimler, K., Yu, A., Tkachev, V., Niederlova, V., Cribbin, K., Fleming, R., Bratrude, B., Betz, K., Cagnin, L., McGuckin, C., Keskula, P., Albanese, A., Sacta, M., de Sousa Casal, J., van Esch, R., Kwong, A. C., Kummerlowe, C., Taliaferro, F., Fiaschi, N., Kou, B., Coetzee, S., Jalal, S., Yabe, Y., Dobosz, M., Wipperman, M. F., Hamon, S., Kalliolias, G. D., Hooper, A., Lim, W. K., Haxhinasto, S., Wei, Y., Ford, M., Ambartsumyan, L., Suskind, D. L., Lee, D., Deutsch, G., Deng, X., Collen, L. V., Mitsialis, V., Snapper, S. B., Wahbeh, G., Shalek, A. K., Ordovas-Montane
10.1101/2021.09.17.21263540 — Posted: 2025-08-06
Identifying the Minimal Number of Protein Markers for Cell Type Annotation Using MiniMarS
Parikh, D., Xue, A., Liao, H.-C., Wishart, C., Ashhurst, T. M., Putri, G., Luciani, F., Naik, S., Salim, A., Marsh-Wakefield, F., Louie, R.
10.1101/2025.07.14.664825 — Posted: 2025-07-18
Inference of single cell profiles from histology stains with the Single-Cell omics from Histology Analysis Framework (SCHAF)
Comiter, C., Chen, X., Vaishnav, E. D., Kobayashi-Kirschvink, K. J., Ciapmricotti, M., Zhang, K., Murray, J., Monticolo, F., Qi, J., Tanaka, R., Brodowska, S. E., Li, B., Yang, Y., Rodig, S. J., Karatza, A., Quintanal Villalonga, A., Turner, M., Pfaff, K. L., Jane-Valbuena, J., Slyper, M., Waldman, J., Vigneau, S., Wu, J., Blosser, T. R., Segerstolpe, A., Abravanel, D., Wagle, N., Demehri, S., Zhuang, X., Rudin, C. M., Klughammer, J., Rozenblatt-Rosen, O., Stultz, C. M., Shu, J., Regev, A.
10.1101/2023.03.21.533680 — Posted: 2025-06-13
A Single-Cell Atlas Of Human Pediatric Liver Reveals Age-Related Hepatic Gene Signatures
Edgar, R. D., Nakib, D., Camat, D., Chung, S., Lumanto, P., Atif, J., Perciani, C. T., Ma, X. Z., Thoeni, C., Selvakumaran, N., Manuel, J., Sayed, B., Huysentruyt, K., Ricciuto, A., McGilvray, I., Avitzur, Y., Bader, G. D., MacParland, S. A.
10.1101/2025.04.16.649149 — Posted: 2025-04-25
Systematic evaluation of single-cell multimodal data integration for comprehensive human reference atlas.
Acera-Mateos, M., Adiconis, X., Li, J.-K., Marchese, D., Caratu, G., Hon, C.-C., Tiwari, P., Kojima, M., Vieth, B., Murphy, M. A., Simmons, S. K., Lefevre, T., Claes, I., O'Connor, C. L., Menon, R., Otto, E. A., Ando, Y., Vandereyken, K., Kretzler, M., Bitzer, M., Fraenkel, E., Voet, T., Enard, W., Carnici, P., Heyn, H., Levin, J. Z., Mereu, E.
10.1101/2025.03.06.637075 — Posted: 2025-03-06
Singletrome: A method to analyze and enhance the transcriptome with long noncoding RNAs for single cell analysis
RAHMAN, R. U., Ahmad, I., Li, Z., Sparks, R., Saad, A. B., Mullen, A.
10.1101/2022.10.31.514182 — Posted: 2025-03-01
Single-cell transcriptomics reveals the impact of sex and age in the healthy human liver
Rahman, R., Epstein, E. T., Murphy, S., Amir-Zilberstein, L., McCabe, C., Delorey, T., Koene, H., Fernandes, L., Tanabe, K. K., Qadan, M., Ferrone, C., Berger, D. L., Shih, A., Deguine, J., Mullen, A.
10.1101/2025.01.27.635138 — Posted: 2025-01-30

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