Channel: 4D Nucleome

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

451 Articles

SAVER: Gene expression recovery for UMI-based single cell RNA sequencing

Huang, M., Wang, J., Torre, E., Dueck, H., Shaffer, S., Bonasio, R., Murray, J., Raj, A., Li, M., Zhang, N. R.

10.1101/138677 — Posted: 2018-03-08

Transcriptional burst initiation and polymerase pause release are key control points of transcriptional regulation

Bartman, C. R., Keller, C. A., Giardine, B., Hardison, R. C., Blobel, G. A., Raj, A.

10.1101/275354 — Posted: 2018-03-02

ChromoTrace: Reconstruction of 3D Chromosome Configurations by Super-Resolution Microscopy

Barton, C., Morganella, S., Oedegaard, O., Alexander, S., Ries, J., Fitzgerald, T., Ellenberg, J., Birney, E.

10.1101/115436 — Posted: 2018-02-22

Emerging Evidence of Chromosome Folding by Loop Extrusion

Fudenberg, G., Abdennur, N., Imakaev, M., Goloborodko, A., Mirny, L.

10.1101/264648 — Posted: 2018-02-16

Measuring the reproducibility and quality of Hi-C data

Yardımcı, G. G., Ozadam, H., Sauria, M. E. G., Ursu, O., Yan, K.-K., Yang, T., Chakraborty, A., Kaul, A., Lajoie, B. R., Song, F., Zhan, Y., Ay, F., Gerstein, M., Kundaje, A., Li, Q., Taylor, J., Yue, F., Dekker, J., Noble, W. S.

10.1101/188755 — Posted: 2018-02-05

Predicting Enhancer-Promoter Interaction from Genomic Sequence with Deep Neural Networks

Singh, S., Yang, Y., Poczos, B., Ma, J.

10.1101/085241 — Posted: 2018-02-05

Defect-Facilitated Buckling in Supercoiled Double-Helix DNA

Brahmachari, S., Dittmore, A., Takagi, Y., Neuman, K. C., Marko, J. F.

10.1101/259689 — Posted: 2018-02-04

Predicting CTCF-mediated chromatin loops using CTCF-MP

Zhang, R., Wang, Y., Yang, Y., Zhang, Y., Ma, J.

10.1101/259416 — Posted: 2018-02-02

C-BERST: Defining subnuclear proteomic landscapes at genomic elements with dCas9-APEX2

Gao, X. D., Tu, L.-C., Mir, A., Rodriguez, T., Ding, Y., Leszyk, J., Dekker, J., Shaffer, S. A., Zhu, L. J., Wolfe, S. A., Sontheimer, E. J.