Channel:  ENCODE

142 Articles

Biop-C: A Method for Chromatin Interactome Analysis of Solid Cancer Needle Biopsy Samples
Animesh, S., Choudhary, R., Ng, X. Y., Tay, J. k. X., Chong, W.-Q., Goh, B. C., Fullwood, M.
10.1101/2021.01.11.426176 — Posted: 2021-01-12
Loop competition and extrusion model predicts CTCF interaction specificity
Xi, W., Beer, M. A.
10.1101/2020.07.02.185389 — Posted: 2021-01-11
MYC overexpression leads to increased chromatin interactions at superenhancers and c-Myc binding sites
See, Y. X., Chen, K., Fullwood, M. J.
10.1101/2021.01.04.425344 — Posted: 2021-01-05
Chromatin Interaction Neural Network (ChINN): A machine learning-based method for predicting chromatin interactions from DNA sequences
Cao, F., Zhang, Y., Cai, Y., Animesh, S., Zhang, Y., Akincilar, S., Loh, Y. P., Chng, W. J., Tergaonkar, V., Kwoh, C. K., Fullwood, M.
10.1101/2020.12.30.424817 — Posted: 2021-01-03
Simple biochemical features underlie transcriptional activation domain diversity and dynamic, fuzzy binding to Mediator
Sanborn, A. L., Yeh, B. T., Feigerle, J. T., Hao, C. V., Townshend, R. J. L., Aiden, E. L., Dror, R. O., Kornberg, R. D.
10.1101/2020.12.18.423551 — Posted: 2020-12-18
Maximizing statistical power to detect clinically associated cell states with scPOST
Millard, N., Korsunsky, I., Weinand, K., Fonseka, C. Y., Nathan, A., Kang, J. B., Raychaudhuri, S.
10.1101/2020.11.23.390682 — Posted: 2020-11-23
HLA autoimmune risk alleles restrict the hypervariable region of T cell receptors
Ishigaki, K., Lagattuta, K., Luo, Y., James, E., Buckner, J., Raychaudhuri, S.
10.1101/2020.11.08.20227983 — Posted: 2020-11-12
H3K27me3-rich genomic regions can function as silencers to repress gene expression via chromatin interactions
Cai, Y., Zhang, Y., Loh, Y. P., Tng, J. Q., Lim, M. C., Cao, Z., Raju, A., Aiden, E. L., Li, S., Manikandan, L., Tergaonkar, V., Tucker-Kellogg, G., Fullwood, M. J.
10.1101/684712 — Posted: 2020-11-06
High-throughput single-cell chromatin accessibility CRISPR screens enable unbiased identification of regulatory networks in cancer
Pierce, S. E., Granja, J. M., Greenleaf, W. J.
10.1101/2020.11.02.364265 — Posted: 2020-11-02
Genetic and Epigenetic Features of Promoters with Ubiquitous Chromatin Accessibility Support Ubiquitous Transcription of Cell-essential Genes
Fan, K., Moore, J. E., Zhang, X.-o., Weng, Z.
10.1101/2020.11.02.364869 — Posted: 2020-11-02

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