Channel: Brown University

This collection includes bioRxiv and medRxiv papers from authors at Brown University.

1164 Articles

Measuring epistasis in fitness landscapes: the correlation of fitness effects of mutations

Luca Ferretti, Benjamin Schmiegelt, Daniel Weinreich, Atsushi Yamauchi, Yutaka Kobayashi, Fumio Tajima, Guillaume Achaz

10.1101/042010 — Posted: 2016-03-01

Information-dependent Enrichment Analysis Reveals Time-dependent Transcriptional Regulation of the Estrogen Pathway of Toxicity

Salil N. Pendse, Alexandra Maertens, Michael Rosenberg, Dipanwita Roy, Rick A. Fasani, Marguerite M. Vantangoli, Samantha J. Madnick, Kim Boekelheide, Albert J. Fornace, James D. Yager, Thomas Hartung, Melvin E. Andersen, Patrick D. McMullen

10.1101/038570 — Posted: 2016-02-04

Reference-free deconvolution of DNA methylation data and mediation by cell composition effects

Eugene Andres Houseman, Molly L Kile, David C Christiani, Tan A Ince, Karl T Kelsey, Carmen J Marsit

10.1101/037671 — Posted: 2016-01-23

Quantifying the unobserved protein-coding variants in human populations provides a roadmap for large-scale sequencing projects

James Zou, Gregory Valiant, Paul Valiant, Konrad Karczewski, Siu On Chan, Kaitlin Samocha, Monkol Lek, Exome Aggregation Consortium, Shamil Sunyaev, Mark Daly, Daniel MacArthur

10.1101/030841 — Posted: 2015-11-07

CRISPR/Cas9-Assisted Transformation-Efficient Reaction (CRATER), a novel method for selective transformation

Lynn J. Rothschild, Daniel T. Greenberg, Jack R. Takahashi, Kirsten A. Thompson, Akshay J. Maheshwari, Ryan E. Kent, Griffin McCutcheon, Joseph D. Shih, Charles L. Calvet, Tyler D. Devlin, Tina Ju, Daniel P. Kunin, Erica K. Lieberman, Thai Nguyen, Forrest G. Tran, Daniel Z. Xiang, Kosuke Fujishima

10.1101/027664 — Posted: 2015-09-27

Phylogenomic analyses support traditional relationships within Cnidaria

Felipe Zapata, Freya E Goetz, Stephen A Smith, Mark Howison, Stefan Siebert, Samuel Church, Steven M Sanders, Cheryl Lewis Ames, Catherine S McFadden, Scott C France, Marymegan Daly, Allen G Collins, Steven HD Haddock, Casey Dunn, Paulyn Cartwright

10.1101/017632 — Posted: 2015-09-09

Sequencing ultra-long DNA molecules with the Oxford Nanopore MinION

John M Urban, Jacob Bliss, Charles E Lawrence, Susan A Gerbi

10.1101/019281 — Posted: 2015-06-22

Automation and Evaluation of the SOWH Test with SOWHAT

Samuel H. Church, Joseph F. Ryan, Casey W. Dunn

10.1101/005264 — Posted: 2015-06-15

Bayesian Nonparametric Inference of Population Size Changes from Sequential Genealogies

Julia A Palacios, John Wakeley, Sohini Ramachandran

10.1101/019216 — Posted: 2015-05-11

Fast ventral stream neural activity enables rapid visual categorization

Maxime Cauchoix, Sébastien M Crouzet, Denis Fize, Thomas Serre

10.1101/017897 — Posted: 2015-04-13

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