Channel: California Institute of Technology

This collection includes bioRxiv and medRxiv papers from authors at California Institute of Technology.

1368 Articles

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

Pardo-Palacios, F. J., Wang, D., Reese, F., Diekhans, M., Carbonell-Sala, S., Williams, B., Loveland, J. E., De Maria, M., Adams, M. S., Balderrama-Gutierrez, G., Behera, A. K., Gonzalez, J. M., Hunt, T., Lagarde, J., Liang, C. E., Li, H., Meade, M. J., Amador, D. A. M., Prjibelski, A. D., Birol, I., Bostan, H., Brooks, A. M., Celik, M. H., Chen, Y., Du, M. R. M., Felton, C., Goke, J., Hafezqorani, S., Herwig, R., Kawaji, H., Lee, J., Li, J.-L., Lienhard, M., Mikheenko, A., Mulligan, D., Nip, K. M., Pertea, M., Ritchie, M. E., Sim, A. D., Tang, A. D., Wan, Y. K., Wang, C., Wong, B. Y., Yang, C

10.1101/2023.07.25.550582 — Posted: 2023-07-27

Pseudomonas aeruginosa AlgF is a protein-protein interaction mediator required for acetylation of the alginate exopolysaccharide

Low, K., Gheorghita, A. A., Tammam, S., Whitfield, G. B., Li, Y. E., Riley, L. M., Weadge, J., Caldwell, S., Chong, P. A., Walvoort, M., Kitova, E., Klassen, J., Howell, P. L.

10.1101/2023.07.25.550544 — Posted: 2023-07-25

Gas vesicle-blood interactions enhance ultrasound imaging contrast

Ling, B., Ko, J. H., Stordy, B., Zhang, Y., Didden, T. F., Malounda, D., Swift, M. B., Chan, W. C. W., Shapiro, M. G.

10.1101/2023.07.24.550434 — Posted: 2023-07-25

Multiplex, quantitative, high-resolution imaging of protein:protein complexes via hybridization chain reaction

Schulte, S. J., Shin, B., Rothenberg, E. V., Pierce, N. A.

10.1101/2023.07.22.550181 — Posted: 2023-07-23

A machine-readable specification for genomics assays

Booeshaghi, A. S., Chen, X., Pachter, L.

10.1101/2023.03.17.533215 — Posted: 2023-07-18

Biochemical Pathways Represented by Gene Ontology Causal Activity Models Identify Distinct Phenotypes Resulting from Mutations in Pathways

Hill, D., Drabkin, H. J., Smith, C. L., Van Auken, K., D'Eustachio, P.

10.1101/2023.05.22.541760 — Posted: 2023-07-13

The ratio between SARS-CoV-2 RNA viral load and culturable viral titer differs depending on stage of infection

Porter, M. K., Viloria Winnett, A., Hao, L., Shelby, N., Reyes, J. A., Schlenker, N. W., Romano, A. E., Tognazzini, C., Feaster, M., Goh, Y.-Y., Gale, M., Ismagilov, R. F.

10.1101/2023.07.06.23292300 — Posted: 2023-07-12

Evolution of connectivity architecture in the Drosophila mushroom body

Ellis, K. E., Bervoets, S., Smihula, H., Ganguly, I., Vigato, E., Auer, T. O., Benton, R., Litwin Kumar, A., Caron, S. J. C.

10.1101/2023.02.10.528036 — Posted: 2023-07-12

Closed ecosystems extract energy through self-organized nutrient cycles

Goyal, A., Flamholz, A. I., Petroff, A. P., Murugan, A.

10.1101/2023.05.30.542875 — Posted: 2023-07-07

Neural subspaces of imagined movements in parietal cortex remain stable over several years in humans.

Bashford, L., Rosenthal, I. A., Kellis, S., Bjanes, D., Pejsa, K., Brunton, B. W., Andersen, R.

10.1101/2023.07.05.547767 — Posted: 2023-07-07

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