Channel: University of California, San Francisco

This collection includes bioRxiv and medRxiv papers from authors at University of California, San Francisco.

2880 Articles

Immunological Profiling in Knee Osteoarthritis: Treg Dysfunction as Key Driver of Pain

Binvignat, M., Dubois, J., Marco Salvador, M., Stys, P., Pitoiset, F., Roux, A., Barbie, M., Hassler, S., Lorenzon, R., Ribet, C., Mhanna, V., Vantomme, H., Adda, L., Barennes, P., Coatnoan, N., Legouge, K., Aheng, C., Courties, A., Minssen, L., Butte, A. J., Six, A., Rosenzwajg, M., Tchitchek, N., Berenbaum, F., Klatzmann, D., Mariotti-Ferrandiz, E., Sellam, J.

10.1101/2024.10.12.618016 — Posted: 2024-10-15

Pathways through which water, sanitation, hygiene, and nutrition interventions reduce antibiotic use in young children: a mediation analysis of a cluster-randomized trial

Nguyen, A., Barratt Heitmann, G., Mertens, A., Ashraf, S., Rahman, M. Z., Ali, S., Rahman, M., Arnold, B. F., Grembi, J. A., Lin, A., Ercumen, A., Benjamin-Chung, J.

10.1101/2024.10.13.24315425 — Posted: 2024-10-15

Metagenomic analysis during capecitabine therapy reveals microbial chemoprotective mechanisms and predicts drug toxicity in colorectal cancer patients

Hillege, L. E., Trepka, K. R., Ziemons, J., Aarnoutse, R., Guthrie, B. G., de Vos-Geelen, J., Valkenburg-van Iersel, L., van Hellemond, I. E., Baars, A., Vestjens, J. H., Penders, J., Deutschbauer, A., Atreya, C. E., Kidder, W. A., Turnbaugh, P. J., Smidt, M. L.

10.1101/2024.10.11.24315249 — Posted: 2024-10-15

Expansion of a bacterial operon during cancer treatment ameliorates drug toxicity

Trepka, K., Kidder, W. A., Kyaw, T. S., Halsey, T., Olson, C. A., Ortega, E. F., Noecker, C., Upadhyay, V., Stanfield, D., Steiding, P., Guthrie, B. G., Spanogiannopoulos, P., Dumlao, D., Turnbaugh, J. A., Stachler, M. D., Van Blarigan, E. L., Venook, A. P., Atreya, C. E., Turnbaugh, P. J.

10.1101/2024.06.04.597471 — Posted: 2024-10-15

Human brain changes after first psilocybin use

Lyons, T., Spriggs, M., Kerkela, L., Rosas, F., Roseman, L., Mediano, P., Timmermann, C., Oestreich, L., Pagni, B., Zeifman, R., Hampshire, A., Trender, W., Douglass, H., Girn, M., Godfrey, K., Kettner, H., Sharif, F., Espasiano, L., Gazzaley, A., Wall, M., Erritzoe, D., Nutt, D., Carhart-Harris, R.

10.1101/2024.10.11.617955 — Posted: 2024-10-15

The kinetics of bedaquiline diffusion in tuberculous cavities opens a window for emergence of resistance.

Bustion, A. E., Ernest, J. P., Kaya, F., Silva, C., Sarathy, J., Blanc, L., Imperial, M., Gengenbacher, M., Xie, M., Zimmerman, M., Robertson, G. T., Weiner, D., Via, L. E., Barry, C. E., Savic, R. M., Dartois, V.

10.1101/2024.10.09.617456 — Posted: 2024-10-14

A Suite of Foundation Models Captures the Contextual Interplay Between Codons

Naghipourfar, M., Chen, S., Howard, M., Macdonald, C., Saberi, A., Hagen, T., Mofrad, M., Coyote-Maestas, W., Goodarzi, H.

10.1101/2024.10.10.617568 — Posted: 2024-10-13

Robust Detection of Brain Stimulation Artifacts in iEEG Using Autoencoder-Generated Signals and ResNet Classification

Saal, J., Khambhati, A. N., Chang, E. F., Shirvalkar, P.

10.1101/2024.09.30.615930 — Posted: 2024-10-13

Longitudinal multi-omics reveals pathogenic TSC2 variants disrupt developmental trajectories of human cortical organoids derived from Tuberous Sclerosis Complex

Niu, W., Yu, S., Li, X., Wang, Z., Chen, R., Michalski, C., Jahangiri, A., Zohdy, Y., Chern, J. J., Whitworth, T. J., Wang, J., Xu, J., Zhou, Y., Qin, Z., Li, B., Gambello, M. J., Peng, J., Wen, Z.

10.1101/2024.10.07.617121 — Posted: 2024-10-11

Functional screen for mediators of onco-mRNA translation specificity

Kovalski, J. R., Sarioglu, G., Subramanyam, V., Hernandez, G., Rademaker, G., Oses-Prieto, J. A., Slota, M., Mohan, N., Yiakis, K., Liu, I., Wen, K. W., Kim, G. E., Miglani, S., Burlingame, A., Goodarzi, H., Perera, R. M., Ruggero, D.

10.1101/2024.10.10.617637 — Posted: 2024-10-11

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