Channel: University of California, San Francisco

This collection includes bioRxiv and medRxiv papers from authors at University of California, San Francisco.

3924 Articles

Clinicopathological Factors Associated with Gastric Signet Ring Cell Carcinoma in CDH1 Pathogenic Variant Carriers: Report from the GASTRIC Consortium

Gilad, O., Drogan, C. M., Keel, E., Gao, G., Swallow, C., Govindarajan, A., Brar, S., Heller, M., Apostolico, T., Jacobs, M. F., Gofar, K., Dudley, B., Karloski, E., Lombardi, C., Springer, M., Saha, S., Cox, D., Lerner, B. A., Hanna, G., Chertock, Y., Khan, A., Ertan, S., Hilfrank, K., Rustgi, S. D., Singh, A., Hall, M. J., Llor, X., Bansal, A., Patel, S. G., Brand, R. E., Roberts, M. E., Stanich, P. P., Stoffel, E., Katona, B. W., Aronson, M., Kupfer, S. S.

10.64898/2026.03.27.26349321 — Posted: 2026-04-02

A population-scale atlas of blood and tissue in lupus nephritis

Sugiarto, N. W., Gurajala, S., Curtis, M., Eisenhaure, T. M., Arazi, A., Fava, A., Xiao, Q., Mears, J., Rovin, B., Berthier, C. C., Zhao, Y., Izmirly, P. M., Barnas, J. L., Hoover, P. J., Peters, M., Raychowdhury, R., Horisberger, A., Sakaue, S., Furie, R. A., Belmont, H. M., Hildeman, D. A., Woodle, E. S., Dall'Era, M., Putterman, C., Kamen, D. L., McMahon, M. A., Grossman, J., Kalunian, K. C., Hodgin, J. B., Payan-Schober, F., Apruzzese, W., Perlman, H., Cuda, C. M., Wofsy, D., Guthridge, J. M., Anolik, J. H., James, J. A., Accelerating Medicines Partnerships Rheumatoid Arthritis/Systemic Lu

10.1101/2025.08.11.669754 — Posted: 2026-04-02

Resolution of recursive data corruption to transform T-cell epitope discovery

Preibisch, G., Tyrolski, M., Kucharski, P., Gizinski, S., Grzegorczyk, P., Moon, S., Kim, S., Zaro, B., Gambin, A.

10.64898/2026.03.30.710191 — Posted: 2026-04-02

Prenatal diet buffers infant epigenetic changes linked to pollution and transient wheeze

Lee, S. A., Konwar, C., Balshaw, R., MacIsaac, J. L., Ramadori, K., Lin, D. T. S., Urtatiz, O., LeWinn, K. Z., Karr, C. J., Smith, A. K., Kobor, M. S., Carroll, K. N., Bush, N. R., Jones, M. J.

10.64898/2026.03.26.714555 — Posted: 2026-04-01

Population genomics reveals multi-scale mechanisms sustaining schistosomiasis re-emergence in a near-elimination setting

Guss, H., Francioli, Y., Grover, E., Hill, A., Zou, W., Wade, K., Pike, H., Gopalan, S. S., Yang, L., Bo, Z., Pollock, D., Carlton, E., Castoe, T. A.

10.64898/2026.03.30.715205 — Posted: 2026-04-01

Temporal AI model predicts drivers of cell state trajectories across human aging

Gomez Ortega, J., Nadadur, R. D., Kunitomi, A., Kothen-Hill, S., Wagner, J. U. G., Kurtoglu, S. D., Kim, B., Reid, M. M., Lu, T., Washizu, K., Zanders, L., Chen, H., Zhang, Y., Ancheta, S., Lichtarge, S., Johnson, W. A., Thompson, C., Phan, D. M., Combes, A. J., Yang, A. C., Tadimeti, N., Dimmeler, S., Yamanaka, S., Alexanian, M., Theodoris, C. V.

10.64898/2026.03.30.715396 — Posted: 2026-04-01

Combinatorial constraints predict that mitochondrial networks contain a large component

Mostov, R., Lewis, G. R., Das, M., Marshall, W. F.

10.64898/2026.03.25.714309 — Posted: 2026-04-01

A Three-dimensional Analytical Framework for Retinal Microvasculature Reveals Layer-associated Vulnerability in Development and Neovascular Remodeling

Shang, W., Hong, G., Keller, W. E., Morton, R. A., Zeboulon, P., Kenichi, T., Duan, X., Gould, D. B., Kim, T. N.

10.64898/2026.03.16.711909 — Posted: 2026-03-31

Sleep and emotional memory: translating neural response at encoding to memory accuracy in men and women with and without PTSD

Santistevan, A. C., Natraj, N., Yack, L. M., Felmingham, K. L., Woodward, S. H., Mathalon, D. H., Neylan, T. C., Richards, A.

10.64898/2026.03.27.714805 — Posted: 2026-03-31

Cell state-specific metabolic networks govern ferroptosis versus apoptosis in small cell lung cancer

Kim, J. W., Bebber, C. M., Dai, Y., Bopp, S., Edenhofer, A., Li, A. M., Rosner, T., Berning, L., Yang, M., Leak, L. B., Stroh, J., Shrestha, B., Abdallah, A., Prymidis, D., Olivos, H., Baron, M., Nguyen, T., Shue, Y. T., Nishiga, Y., Drainas, A., Chaikovsky, A., Szylo, K., Li, Y., Kang, Y. P., Manoj, P., Quintanal Villalonga, A., Rudin, C. M., DeNicola, G. M., Dixon, S. J., Frezza, C., Ye, J., von Karstedt, S., Sage, J.

10.64898/2026.03.27.714827 — Posted: 2026-03-31

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