Channel: University of California, San Francisco

This collection includes bioRxiv and medRxiv papers from authors at University of California, San Francisco.

2533 Articles

Coordinated stimulation of axon regenerative and neurodegenerative transcriptional programs by ATF4 following optic nerve injury

Somasundaram, P., Farley, M. M., Rudy, M. A., Sigal, K., Asencor, A. I., Stefanoff, D. G., Shah, M., Goli, P., Heo, J., Wang, S., Tran, N. M., Watkins, T. A.

10.1101/2023.03.29.534798 — Posted: 2024-09-25

Histone demethylase enzymes KDM5A and KDM5B modulate immune response by suppressing transcription of endogenous retroviral elements

Chen, H., Sarah, L., Pucciarelli, D., Mao, Y., Diolaiti, M. E., Galonic Fujimori, D., ashworth, A.

10.1101/2024.09.23.614494 — Posted: 2024-09-25

nSMase2-mediated exosome secretion shapes the tumor microenvironment to immunologically support pancreatic cancer

Hendley, A. M., Ashe, S., Urano, A., Ng, M., Phu, T. A., Peng, X. L., Luan, C., Finger, A.-M., Jang, G. H., Kerper, N. R., Berrios, D. I., Jin, D., Lee, J., Riahi, I. R., Gbenedio, O. M., Chung, C., Roose, J., Yeh, J. J., Gallinger, S., Biankin, A. V., OKane, G. M., Ntranos, V., Chang, D., Dawson, D. W., Kim, G. E., Weaver, V. M., Raffai, R. L., Hebrok, M.

10.1101/2024.09.23.614610 — Posted: 2024-09-25

Super-enhancer profiling reveals ThPOK/ZBTB7B, a CD4+ cell lineage commitment factor, as a master regulator that restricts breast cancer cells to a luminal non-migratory phenotype

Arcuschin, C. D., Kahrizi, K., Sayaman, R. W., DiBenedetto, C., Shen, Y., Salaberry, P. J., Zakroui, O., Schwarzer, C., Scapozza, A., Betancur, P., Saba, J. D., Coppe, J.-P., Barcellos-Hoff, M. H., Kappes, D., van 't Veer, L., Schor, I. E., Munoz, D. P.

10.1101/2024.09.21.614267 — Posted: 2024-09-25

Comprehensive proteolytic profiling of Aedes aegypti mosquito midgut extracts: Unraveling the blood meal protein digestion system

O'Donoghue, A. J., Lui, C., Simington, C. J., Montermoso, S., Moreno-Galvez, E., Serafim, M. S. M., Burata, O. E., Lucero, R. M., Nguyen, J. T., Fong, D., Tran, K., Millan, N., Gallimore, J. M., Parungao, K. A., Fong, J., Suzuki, B. M., Jiang, Z., Isoe, J., Rascon, A. A.

10.1101/2024.09.23.614410 — Posted: 2024-09-24

Exploring a roadmap to achieving tobacco endgame in sub-Saharan Africa: A qualitative study among stakeholders from 12 countries

Egbe, C. O., Ngobese, S. P., Khan, A., Gwambe, S., Ngcobo, Z. P., Bialous, S. A.

10.1101/2024.09.23.24314176 — Posted: 2024-09-24

Characterizing trachoma elimination using serology

Kamau, E., Ante-Testard, P. A., Gwyn, S., Blumberg, S., Abdalla, Z., Aiemjoy, K., Amza, A., Aragie, S., Arzika, A. M., Awoussi, M. S., Bailey, R. L., Butcher, R., Callahan, E. K., Chaima, D., Dawed, A. A., Saboya Diaz, M. I., Domingo, A.-B. S., Drakeley, C., Elshafie, B. E., Emerson, P. M., Fornace, K., Gass, K., Goodhew, E. B., Hammou, J., Harding-Esch, E. M., Hooper, P., Kadri, B., Kalua, K., Kanyi, S., Kasubi, M., Kello, A. B., Ko, R., Lammie, P. J., Lescano, A. G., Maliki, R., Masika, M., Migchelsen, S. J., Nassirou, B., Nesemann, J. M., Parameswaran, N., Pomat, W., Renneker, K., Roberts

10.1101/2024.09.20.24313635 — Posted: 2024-09-24

Expanding Automated Multiconformer Ligand Modeling to Macrocycles and Fragments

Flowers, J., Echols, N., Correy, G., Jaishankar, P., Togo, T., Renslo, A. R., van den Bedem, H., Fraser, J. S., Wankowicz, S. A.

10.1101/2024.09.20.613996 — Posted: 2024-09-23

Association of immunoglobulin E levels with glioma risk and survival

Guerra, G. A., Nakase, T., Kachuri, L., McCoy, L., Hansen, H. M., Rice, T., Wiemels, J. L., Wiencke, J. K., Molinaro, A. M., Wrensch, M., Francis, S. S.

10.1101/2024.05.09.24307132 — Posted: 2024-09-23

Epiregulon: Inference of single-cell transcription factor activity to predict drug response and drivers of cell state

Wlodarczyk, T., Lun, A., Wu, D., Shi, M., Ye, X., Menon, S., Toneyan, S., Seidel, K., Wang, L., Tan, J., Chen, S.-Y., Keyes, T., Chlebowski, A., Waddell, A., Zhou, W., Wang, Y., Yuan, Q., Guo, Y., Chen, L.-F., Daniel, B., Hafner, A., He, M., Chibly, A., Liang, Y., Duren, Z., Metcalfe, C., Hafner, M., Siebel, C. W., Corces, M. R., Yauch, R., Xie, S., Yao, X.

10.1101/2023.11.27.568955 — Posted: 2024-09-23

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