Channel: University of California, San Francisco

This collection includes bioRxiv and medRxiv papers from authors at University of California, San Francisco.

2368 Articles

Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis

Alex L Greninger, Samia N Naccache, Scot Federman, Guixia Yu, Placide Mbala, Vanessa Bres, Jerome Bouquet, Doug Stryke, Sneha Somasekar, Jeffrey Linnen, Roger Dodd, Prime Mulembakani, Bradley Schneider, Jean-Jacques Muyembe, Susan Stramer, Charles Y Chiu

10.1101/020420 — Posted: 2015-06-05

Exposing hidden alternative backbone conformations in X-ray crystallography using qFit

Daniel A Keedy, James Fraser, Henry van den Bedem

10.1101/018879 — Posted: 2015-05-04

Selection and explosive growth may hamper the performance of rare variant association tests

Lawrence H. Uricchio, John S. Witte, Ryan D. Hernandez

10.1101/015917 — Posted: 2015-03-02

Coevolutionary analyses require phylogenetically deep alignments and better null models to accurately detect inter-protein contacts within and between species

Aram Avila-Herrera, Katherine Pollard

10.1101/014902 — Posted: 2015-02-20

Side-chain-directed model and map validation for 3D Electron Cryomicroscopy

Benjamin A Barad, Nathaniel Echols, Ray Yu-Ruei Wang, Yifan Cheng, Frank DiMaio, Paul D Adams, James S Fraser

10.1101/014738 — Posted: 2015-02-03

From deep TLS validation to ensembles of atomic models built from elemental motions

Alexandre Urzhumtsev, Pavel Afonine, Andrew H Van Benschoten, James Fraser, Paul D Adams

10.1101/012930 — Posted: 2015-01-02

Predicting X-ray Diffuse Scattering from Translation Libration Screw Structural Ensembles

Andrew Van Benschoten, Pavel Afonine, Thomas Terwilliger, Michael Wall, Colin Jackson, Nicholas Sauter, Paul Adams, Alexandre Urzhumtsev, James Fraser

10.1101/012955 — Posted: 2015-01-02

Heterogeneous Network Edge Prediction: A Data Integration Approach to Prioritize Disease-Associated Genes

Daniel S Himmelstein, Sergio E Baranzini

10.1101/011569 — Posted: 2014-12-11

Conservation and structural analysis of the Xenopus laevis phospho-proteome

Jeffrey R Johnson, Silvia D Santos, Tasha Johnson, Ursula Pieper, Andrej Sali, Nevan J Krogan, Pedro Beltrao

10.1101/009100 — Posted: 2014-09-14

Disentangling Multidimensional Spatio-Temporal Data into their Common and Aberrant Responses

Young Hwan Chang, Jim Korkola, Dhara N. Amin, Mark M. Moasser, Jose M. Carmena, Joe W. Gray, Claire J. Tomlin

10.1101/004259 — Posted: 2014-04-28

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