Channel: Human Pangenome Reference Consortium (HPRC)

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

50 Articles

Towards Inferring Nanopore Sequencing Ionic Currents from Nucleotide Chemical Structures

DING, H., Anastopoulos, I., Bailey, A. D., Paten, B., Stuart, J.

10.1101/2020.11.30.404947 — Posted: 2020-12-02

UCSC Cell Browser: Visualize Your Single-Cell Data

Speir, M. L., Bhaduri, A., Markov, N. S., Moreno, P., Nowakowski, T. J., Papatheodorou, I., Pollen, A. A., Seninge, L., Kent, W. J., Haeussler, M.

10.1101/2020.10.30.361162 — Posted: 2020-10-31

The structure, function, and evolution of a complete human chromosome 8

Logsdon, G. A., Vollger, M. R., Hsieh, P., Mao, Y., Liskovykh, M. A., Koren, S., Nurk, S., Mercuri, L., Dishuck, P. C., Rhie, A., de Lima, L. G., Porubsky, D., Bzikadze, A. V., Kremitzki, M., Graves-Lindsay, T. A., Jain, C., Hoekzema, K., Murali, S. C., Munson, K. M., Baker, C., Sorenson, M., Lewis, A. M., Surti, U., Gerton, J. L., Larionov, V., Ventura, M., Miga, K. H., Phillippy, A. M., Eichler, E. E.

10.1101/2020.09.08.285395 — Posted: 2020-09-08

Transcript assembly improves expression quantification of transposable elements in single cell RNA-seq data

Shao, W., Wang, T.

10.1101/2020.07.31.231027 — Posted: 2020-07-31

Accurate chromosome-scale haplotype-resolved assembly of human genomes

Garg, S., Arkarachai Fungtammasan, A., Carroll, A., Chou, M., Schmitt, A., Zhou, X., Mac, S., Peluso, P., Hatas, E., Ghurye, J., Maguire, J., Mahmoud, M., Cheng, H., Heller, D., Zook, J. M., Moemke, T., Marschall, T., Sedlazeck, F. J., Aach, J., Chin, C.-S., Church, G. M., Li, H. M.

10.1101/810341 — Posted: 2020-07-01

Higher rates of processed pseudogene acquisition in humans and three great apes revealed by long read assemblies

Feng, X., Li, H.

10.1101/2020.06.07.139212 — Posted: 2020-06-08

Succinct dynamic variation graphs

Eizenga, J. M., Novak, A. M., Kobayashi, E., Villani, F., Cisar, C., Heumos, S., Hickey, G., Colonna, V., Paten, B., Garrison, E.

10.1101/2020.04.23.056317 — Posted: 2020-04-25

SDip: A novel graph-based approach to haplotype-aware assembly based structural variant calling in targeted segmental duplications sequencing

Heller, D., Vingron, M., Church, G., Li, H., Garg, S.

10.1101/2020.02.25.964445 — Posted: 2020-02-26

Exploring the coronavirus epidemic using the new WashU Virus Genome Browser

Flynn, J., Purushotham, D., Choudhary, M. N., Zhuo, X., Fan, C., Matt, G., Li, D., Wang, T.