Channel:  Human Pangenome Reference Consortium (HPRC)

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

94 Articles

GBZ File Format for Pangenome Graphs
Siren, J., Paten, B.
10.1101/2022.07.12.499787 — Posted: 2022-09-06
Optimal gap-affine alignment in O(s) space
Marco-Sola, S., Eizenga, J. M., Guarracino, A., Paten, B., Garrison, E., Moreto, M.
10.1101/2022.04.14.488380 — Posted: 2022-08-17
Constructing founder sets under allelic and non-allelic homologous recombination
Bonnet, K., Marschall, T., Doerr, D.
10.1101/2022.05.27.493721 — Posted: 2022-08-01
Haplotype-aware pantranscriptome analyses using spliced pangenome graphs
Sibbesen, J. A., Eizenga, J. M., Novak, A. M., Siren, J., Chang, X., Garrison, E., Paten, B.
10.1101/2021.03.26.437240 — Posted: 2022-07-21
A Draft Human Pangenome Reference
Liao, W.-W., Asri, M., Ebler, J., Doerr, D., Haukness, M., Hickey, G., Lu, S., Lucas, J. K., Monlong, J., Abel, H. J., Buonaiuto, S., Chang, X. H., Cheng, H., Chu, J., Colonna, V., Eizenga, J. M., Feng, X., Fischer, C., Fulton, R. S., Garg, S., Groza, C., Guarracino, A., Harvey, W. T., Heumos, S., Howe, K., Jain, M., Lu, T.-Y., Markello, C., Martin, F. J., Mitchell, M. W., Munson, K. M., Mwaniki, M. N., Novak, A. M., Olsen, H. E., Pesout, T., Porubsky, D., Prins, P., Sibbesen, J. A., Tomlinson, C., Villani, F., Vollger, M. R., Human Pangenome Reference Consortium, , Bourque, G., Chaisson, M.
10.1101/2022.07.09.499321 — Posted: 2022-07-09
Increased mutation rate and interlocus gene conversion within human segmental duplications.
Vollger, M. R., DeWitt, W. S., Dishuck, P. C., Harvey, W. T., Guitart, X., Goldberg, M. E., Rozanski, A., Lucas, J., Asri, M., The Human Pangenome Reference Consortium, , Munson, K. M., Lewis, A. P., Hoekzema, K., Logsdon, G. A., Porubsky, D., Paten, B., Harris, K., Hsieh, P., Eichler, E. E.
10.1101/2022.07.06.498021 — Posted: 2022-07-07
Gaps and complex structurally variant loci in phased genome assemblies
Porubsky, D., Vollger, M. R., Harvey, W. T., Rozanski, A. N., Ebert, P., Hickey, G., Hasenfeld, P., Sanders, A. D., Stober, C., Human Pangenome Reference Consortium (HPRC), , Korbel, J. O., Paten, B., Marschall, T., Eichler, E. E.
10.1101/2022.07.06.498874 — Posted: 2022-07-06
The dynseq genome browser track enables visualization of context-specific, dynamic DNA sequence features at single nucleotide resolution
Nair, S., Barrett, A., Li, D., Raney, B. J., Lee, B. T., Kerpedjiev, P., Ramalingam, V., Pampari, A., Lekschas, F., Wang, T., Haeussler, M., Kundaje, A.
10.1101/2022.05.26.493621 — Posted: 2022-05-31
AGC: Compact representation of assembled genomes
Deorowicz, S., Danek, A., Li, H.
10.1101/2022.04.07.487441 — Posted: 2022-04-07
Concerted modification of nucleotides at functional centers of the ribosome revealed by single-molecule RNA modification profiling
Bailey, A. D., Talkish, J., Ding, H., Igel, H., Duran, A., Mantripragada, S., Paten, B., Ares, M.
10.1101/2021.12.16.472988 — Posted: 2022-03-25

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