Channel:  Human Pangenome Reference Consortium (HPRC)

171 Articles

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POPARI: Modeling multisample variation in spatial transcriptomics
Alam, S., Zhou, T., Haber, E., Chidester, B., Liu, S., Chen, F., Ma, J.
10.1101/2025.05.08.652741 — Posted: 2025-05-13
Unified integration of spatial transcriptomics across platforms
Haber, E., Deshpande, A., Ma, J., Krieger, S.
10.1101/2025.03.31.646238 — Posted: 2025-04-21
Genotyping sequence-resolved copy number variationusing pangenomes reveals paralog-specific global diversityand expression divergence of duplicated genes
Ma, W., Chaisson, M.
10.1101/2024.08.11.607269 — Posted: 2025-04-13
STEAMBOAT: Attention-based multiscale delineation of cellular interactions in tissues
Liang, S., Tang, J., Wang, G., Ma, J.
10.1101/2025.04.06.647437 — Posted: 2025-04-10
Integrated single-cell and spatial multiomic analysis reveals widespread reactivation of developmental programs in diseased human hearts
Gao, W., Hu, P., Qiu, Q., Kang, X., Bedi, K., Sasaki, K., Margulies, K., Wu, H.
10.1101/2025.04.01.646460 — Posted: 2025-04-07
Expression spectrum of TE-derived transcripts in human adult tissues
Miao, B., Zhang, B., WU, T. P., Luo, X., Ademovic, A., Yang, Y.
10.1101/2025.03.29.646092 — Posted: 2025-04-03
Machine Learning-Based Identification of Survival-Associated CpG Biomarkers in Pancreatic Ductal Adenocarcinoma
Zhang, B., Zhang, Y., Zhao, Y.
10.1101/2025.03.29.646090 — Posted: 2025-04-01
Whole-Genome Sequencing Reveals Individual and Cohort Level Insights into Chromosome 9p Syndromes
Wang, Y., Sams, E. I., Slaugh, R., Crocker, S., Hurtado, E. C., Tracy, S., Hou, Y.-C. C., Markovic, C., Valle, K., Tate, V., Belhassan, K., Appelbaum, E., Akinwe, T., Tzovenos, R. S., Cao, Y., Neilson, A., Liu, Y., Jensen, N., Ghasemi, R., Lindsay, T., Manuel, J., Couteranis, S., Kremitzki, M., Ustanik, J., Antonacci, T., Ng, J. K., Emory, A., Metz, L., DeLuca, T., Lyons, K. N., Sinnwell, T., Thomeczek, B., Wang, K., Sisneros, N., Muraleedharan, M., Kethireddy, A., Corbo, M., Gowda, H., King, K., Gurnett, C. A., Dutcher, S. K., Gooch, C., Li, Y. E., Mitchell, M. W., Peterson, K. A., Horani, A.
10.1101/2025.03.28.25324850 — Posted: 2025-03-30
Linking molecular pathways and islet cell dysfunction in human type 1 diabetes
dos Santos, T., Dai, X. Q., Jones, R. C., Spigelman, A. F., Mummey, H. M., Ewald, J. D., Ellis, C. E., Lyon, J. G., Smith, N., Bautista, A., Manning Fox, J. E., Neff, N. F., Detweiler, A., Tan, M., Arrojo e Drigo, R., Xia, J., Camunas-Soler, J., Gaulton, K. J., Quake, S. R., MacDonald, P. E.
10.1101/2025.02.20.639325 — Posted: 2025-02-21
The impact of ambient contamination on demultiplexing methods for single-nucleus multiome experiments
Li, T., Alvarez, M., Liu, C., Abuhanna, K., Sun, Y., Ernst, J., Plath, K., Balliu, B., Luo, C., Zaitlen, N.
10.1101/2025.02.06.636969 — Posted: 2025-02-08

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