Channel:  Human Pangenome Reference Consortium (HPRC)

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

50 Articles

Constructing founder sets under allelic and non-allelic homologous recombination
Bonnet, K., Marschall, T., Doerr, D.
10.1101/2022.05.27.493721 — Posted: 2022-08-01
Optimal gap-affine alignment in O(s) space
Marco-Sola, S., Eizenga, J. M., Guarracino, A., Paten, B., Garrison, E., Moreto, M.
10.1101/2022.04.14.488380 — Posted: 2022-08-17
GBZ File Format for Pangenome Graphs
Siren, J., Paten, B.
10.1101/2022.07.12.499787 — Posted: 2022-09-06
Inversion polymorphism in a complete human genome assembly
Porubsky, D., Harvey, W. T., Rozanski, A. N., Ebler, J., Hoeps, W., Ashraf, H., Hasenfeld, P., Paten, B., Sanders, A. D., Marschall, T., Korbel, J. O., Eichler, E. E.
10.1101/2022.10.06.511148 — Posted: 2022-10-06
T1K: efficient and accurate KIR and HLA genotyping with next-generation sequencing data
Song, L., Bai, G., Liu, X. S., Li, B., Li, H.
10.1101/2022.10.26.513955 — Posted: 2022-10-27
The complete sequence of a human Y chromosome
Rhie, A., Nurk, S., Cechova, M., Hoyt, S. J., Taylor, D. J., Altemose, N., Hook, P. W., Koren, S., Rautiainen, M., Alexandrov, I. A., Allen, J., Asri, M., Bzikadze, A. V., Chen, N.-C., Chin, C.-S., Diekhans, M., Flicek, P., Formenti, G., Fungtammasan, A., Garcia Giron, C., Garrison, E., Gershman, A., Gerton, J., Grady, P. G., Guarracino, A., Haggerty, L., Halabian, R., Hansen, N. F., Harris, R., Hartley, G. A., Harvey, W. T., Haukness, M., Heinz, J., Hourlier, T., Hubley, R. M., Hunt, S. E., Hwang, S., Jain, M., Kesharwani, R. K., Lewis, A. P., Li, H., Logsdon, G. A., Lucas, J. K., Makalowski
10.1101/2022.12.01.518724 — Posted: 2023-07-11
Assembly of 43 diverse human Y chromosomes reveals extensive complexity and variation
Hallast, P., Ebert, P., Loftus, M., Yilmaz, F., Audano, P. A., Logsdon, G. A., Bonder, M. J., Zhou, W., Hoeps, W., Kim, K., Li, C., Hoyt, S. J., Dishuck, P. C., Porubsky, D., Tsetsos, F., Kwon, J. Y., Zhu, Q., Munson, K. M., Hasenfeld, P., Harvey, W. T., Lewis, A. P., Kordosky, J., Hoekzema, K., (HGSVC), T. H. G. S. V. C., O'Neill, R. J., Korbel, J. O., Tyler-Smith, C., Eichler, E. E., Shi, X., Beck, C. R., Marschall, T., Konkel, M. K., Lee, C.
10.1101/2022.12.01.518658 — Posted: 2023-06-12
Comparing Genomic and Epigenomic Features across Species Using the WashU Comparative Epigenome Browser
Zhuo, X., Hsu, S., Purushotham, D., Chen, S., Li, D., Wang, T.
10.1101/2022.11.29.518374 — Posted: 2022-12-02
Spatial transcriptomics reveals a conserved segment polarity program that governs muscle patterning in Nematostella vectensis
He, S., Shao, W., Chen, S., Wang, T., Gibson, M.
10.1101/2023.01.09.523347 — Posted: 2023-01-10
Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation
Kolmogorov, M., Billingsley, K. J., Mastoras, M., Meredith, M., Monlong, J., Lorig-Roach, R., Asri, M., Alvarez Jerez, P., Malik, L., Dewan, R., Reed, X., Genner, R. M., Daida, K., Behera, S., Shafin, K., Pesout, T., Prabakaran, J., Carnevali, P., North American Brain Expression Consortium (NABEC), , Yang, J., Rhie, A., Scholz, S. W., Traynor, B. J., Miga, K. H., Jain, M., Timp, W., Phillippy, A. M., Chaisson, M., Sedlazeck, F. J., Blauwendraat, C., Paten, B.
10.1101/2023.01.12.523790 — Posted: 2023-04-05

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