Channel:  Impact of Genomic Variation on Function (IGVF)

120 Articles

Integrative single-cell analysis of cardiogenesis identifies developmental trajectories and non-coding mutations in congenital heart disease
Ameen, M., Sundaram, L., Banerjee, A., Shen, M., Kundu, S., Nair, S., Shcherbina, A., Gu, M., Wilson, K. D., Varadarajan, A., Vadgama, N., Balsubramani, A., Wu, J. C., Engreitz, J., Farh, K., Karakikes, I., Wang, K. C., Quertermous, T., Greenleaf, W., Kundaje, A.
10.1101/2022.06.29.498132 — Posted: 2022-06-29
CROP-Seq: a single-cell CRISPRi platform for characterizing candidate genes relevant to metabolic disorders in human adipocytes
Bielczyk-Maczynska, E., Sharma, D., Blencowe, M., Saliba-Gustafsson, P., Gloudemans, M. J., Yang, X., Carcamo-Orive, I., Wabitsch, M., Svensson, K. J., Park, C. Y., Quertermous, T., Knowles, J. W., Li, J.
10.1101/2022.06.27.497796 — Posted: 2022-06-27
The dynseq genome browser track enables visualization of context-specific, dynamic DNA sequence features at single nucleotide resolution
Nair, S., Barrett, A., Li, D., Raney, B. J., Lee, B. T., Kerpedjiev, P., Ramalingam, V., Pampari, A., Lekschas, F., Wang, T., Haeussler, M., Kundaje, A.
10.1101/2022.05.26.493621 — Posted: 2022-05-31
Deciphering the Impact of Genetic Variation on Human Polyadenylation
Linder, J., Kundaje, A., Seelig, G.
10.1101/2022.05.09.491198 — Posted: 2022-05-10
A framework for summarizing chromatin state annotations within and identifying differential annotations across groups of samples
Vu, H. T., Koch, Z., Fiziev, P., Ernst, J.
10.1101/2022.05.08.491094 — Posted: 2022-05-08
Limited overlap of eQTLs and GWAS hits due to systematic differences in discovery
Mostafavi, H., Spence, J. P., Naqvi, S., Pritchard, J. K.
10.1101/2022.05.07.491045 — Posted: 2022-05-08
A unique epigenomic landscape defines CD8+ tissue-resident memory T cells
Buquicchio, F. A., Fonseca, R., Belk, J. A., Evrard, M., Obers, A., Qi, Y., Daniel, B., Yost, K. E., Satpathy, A. T., Mackay, L. K.
10.1101/2022.05.04.490680 — Posted: 2022-05-06
Genome-wide CRISPR guide RNA design and specificity analysis with GuideScan2
Schmidt, H., Zhang, M., Mourelatos, H., Sanchez-Rivera, F. J., Lowe, S. W., Ventura, A., Leslie, C. S., Pritykin, Y.
10.1101/2022.05.02.490368 — Posted: 2022-05-03
Microbiota-instructed regulatory T cell differentiation is mediated by a distinct RORγt+ antigen presenting cell subset
Kedmi, R., Najar, T., Mesa, K. R., Grayson, A., Kroehling, L., Hao, Y., Hao, S., Pokrovskii, M., Xu, M., Talbot, J., Wang, J., Germino, J., Lareau, C. A., Satpathy, A. T., Anderson, M. S., Laufer, T. M., Aifantis, I., Bartleson, J. M., Allen, P. M., Paidassi, H., Gardner, J. M., Stoeckius, M., Littman, D. R.
10.1101/2021.11.19.469318 — Posted: 2022-04-29
Genome-wide CRISPR screens of T cell exhaustion identify chromatin remodeling factors that limit T cell persistence
Belk, J., Yao, W., Ly, N., Freitas, K., Chen, Y.-T., Shi, Q., Valencia, A., Shifrut, E., Kale, N., Yost, K., Duffy, C., Hwee, M., Miao, Z., Ashworth, A., Mackall, C., Marson, A., Carnevale, J., Vardhana, S., Satpathy, A.
10.1101/2022.04.20.488974 — Posted: 2022-04-21

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