Channel:  Rosetta Commons

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

33 Articles

PRosettaC: Rosetta based modeling of PROTAC mediated ternary complexes
Zaidman, D., London, N.
10.1101/2020.05.27.119354 — Posted: 2020-05-30
Robustification of RosettaAntibody and Rosetta SnugDock
Jeliazkov, J. R., Frick, R., Zhou, J., Gray, J. J.
10.1101/2020.05.26.116210 — Posted: 2020-05-26
A generative algorithm for de novo design of proteins with diverse pocket structures
Basanta, B., Bick, M. J., Bera, A. K., Norn, C., Chow, C. M., Carter, L. P., Goreshnick, I., Dimaio, F., Baker, D.
10.1101/2020.03.23.003913 — Posted: 2020-03-24
Prediction of protein mutational free energy: benchmark and sampling improvements increase classification accuracy
Frenz, B., Lewis, S., King, I., Park, H., DiMaio, F., Song, Y.
10.1101/2020.03.18.989657 — Posted: 2020-03-20
Designing Peptides on a Quantum Computer
Mulligan, V. K., Melo, H., Merritt, H. I., Slocum, S., Weitzner, B. D., Watkins, A. M., Renfrew, P. D., Pelissier, C., Arora, P. S., Bonneau, R.
10.1101/752485 — Posted: 2020-03-11
Geometric Potentials from Deep Learning Improve Prediction of CDR H3 Loop Structures
Ruffolo, J. A., Guerra, C., Mahajan, S. P., Sulam, J., Gray, J. J.
10.1101/2020.02.09.940254 — Posted: 2020-02-10
Novel sampling strategies and a coarse-grained score function for docking homomers, flexible heteromers, and oligosaccharides using Rosetta in CAPRI Rounds 37-45
Roy Burman, S. S., Nance, M. L., Jeliazkov, J. R., Labonte, J. W., Lubin, J. H., Biswas, N., Gray, J. J.
10.1101/749317 — Posted: 2019-11-03
FARFAR2: Improved de novo Rosetta prediction of complex global RNA folds
Watkins, A. M., Das, R.
10.1101/764449 — Posted: 2019-09-10
Efficient consideration of coordinated water molecules improves computational protein-protein and protein-ligand docking
Pavlovicz, R. E., Park, H., DiMaio, F.
10.1101/618603 — Posted: 2019-07-29
Protein structure prediction and design in a biologically-realistic implicit membrane
Alford, R. F., Fleming, P. J., Fleming, K. G., Gray, J. J.
10.1101/630715 — Posted: 2019-05-08

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