Channel:  Rosetta Commons

33 Articles

Design of proteins presenting discontinuous functional sites using deep learning
Tischer, D., Lisanza, S., Wang, J., Dong, R., Anishchenko, I. K., Milles, L., Ovchinnikov, S., Baker, D.
10.1101/2020.11.29.402743 — Posted: 2020-11-29
Improved protein structure refinement guided by deep learning based accuracy estimation
Hiranuma, N., Park, H., Anishchanka, I., Baek, M., Dauparas, J., Baker, D.
10.1101/2020.07.17.209643 — Posted: 2020-11-04
De novo design of transmembrane beta-barrels
Vorobieva, A. A., White, P., Liang, B., Horne, J. E., Bera, A. K., Chow, C. M., Gerben, S. R., Marx, S., Kang, A., Stiving, A. Q., Harvey, S. R., Marx, D. C., Khan, N., Fleming, K. G., Wysocki, V. H., Brockwell, D. J., Tamm, L. K., Radford, S. E., Baker, D.
10.1101/2020.10.22.346965 — Posted: 2020-10-23
Structural basis for peptide substrate specificities of glycosyltransferase GalNAc-T2
Mahajan, S. P., Srinivasan, Y., Labonte, J. W., DeLisa, M. P., Gray, J. J.
10.1101/2020.06.25.171371 — Posted: 2020-10-16
Learning a force field from small-molecule crystal lattice predictions enables consistent sub-Angstrom protein-ligand docking
Park, H., Zhou, G., Baek, M., Baker, D., DiMaio, F.
10.1101/2020.09.06.285239 — Posted: 2020-09-07
Hierarchical design of multi-scale protein complexes by combinatorial assembly of oligomeric helical bundle and repeat protein building blocks
Hsia, Y., Mout, R., Sheffler, W., Edman, N. I., Vulovic, I., Park, Y.-J., Redler, R. L., Bick, M. J., Bera, A. K., Courbet, A., Kang, A., Brunette, T., Nattermann, U., Tsai, E., Saleem, A., Chow, C. M., Ekiert, D. C., Bhabha, G., Veesler, D., Baker, D.
10.1101/2020.07.27.221333 — Posted: 2020-07-28
Protein sequence design by explicit energy landscape optimization
Norn, C., Wicky, B. I. M., Juergens, D., Liu, S., Kim, D., Koepnick, B., Anishchenko, I., Foldit Players, , Baker, D., Ovchinnikov, S.
10.1101/2020.07.23.218917 — Posted: 2020-07-24
De novo protein design by deep network hallucination
Anishchenko, I., Chidyausiku, T. M., Ovchinnikov, S., Pellock, S. J., Baker, D.
10.1101/2020.07.22.211482 — Posted: 2020-07-23
Diverse scientific benchmarks for implicit membrane energy functions
Alford, R. F., Gray, J. J.
10.1101/2020.06.23.168021 — Posted: 2020-06-24
Protein sequence optimization with a pairwise decomposable penalty for buried unsatisfied hydrogen bonds
Coventry, B., Baker, D.
10.1101/2020.06.17.156646 — Posted: 2020-06-17

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