Channel:  ENCODE

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

136 Articles

H3K27me3-rich genomic regions can function as silencers to repress gene expression via chromatin interactions
Cai, Y., Zhang, Y., Loh, Y. P., Tng, J. Q., Lim, M. C., Cao, Z., Raju, A., Aiden, E. L., Li, S., Manikandan, L., Tergaonkar, V., Tucker-Kellogg, G., Fullwood, M. J.
10.1101/684712 — Posted: 2020-11-06
IFN-γ and TNF-α drive a CXCL10+ CCL2+ macrophage phenotype expanded in severe COVID-19 and other diseases with tissue inflammation
Zhang, F., Mears, J. R., Shakib, L., Beynor, J. I., Shanaj, S., Korsunsky, I., Nathan, A., Accelerating Medicines Partnership Rheumatoid Arthritis and Systemic Lupus Erythematosus, , Donlin, L. T., Raychaudhuri, S.
10.1101/2020.08.05.238360 — Posted: 2020-08-05
Efficient and precise single-cell reference atlas mapping with Symphony
Kang, J. B., Nathan, A., Zhang, F., Millard, N., Rumker, L., Moody, D. B., Korsunsky, I., Raychaudhuri, S.
10.1101/2020.11.18.389189 — Posted: 2021-03-16
Maximizing statistical power to detect clinically associated cell states with scPOST
Millard, N., Korsunsky, I., Weinand, K., Fonseka, C. Y., Nathan, A., Kang, J. B., Raychaudhuri, S.
10.1101/2020.11.23.390682 — Posted: 2020-11-23
Higher Native Peruvian ancestry proportion is associated with tuberculosis progression risk
Asgari, S., Luo, Y., Slowikowski, K., Huang, C.-C., Calderon, R., Jimenez, J., Yataco, R., Contreras, C., Galea, J. T., Lecca, L., Jones, D., Moody, D. B., Murray, M. B., Raychaudhuri, S.
10.1101/2020.09.09.20191437 — Posted: 2020-09-11
HLA autoimmune risk alleles restrict the hypervariable region of T cell receptors
Ishigaki, K., Lagattuta, K., Luo, Y., James, E., Buckner, J., Raychaudhuri, S.
10.1101/2020.11.08.20227983 — Posted: 2020-11-12
A high-resolution HLA reference panel capturing global population diversity enables multi-ethnic fine-mapping in HIV host response
Luo, Y., Kanai, M., Choi, W., Li, X., Yamamoto, K., Ogawa, K., Gutierrez-Arcelus, M., Gregersen, P. K., Stuart, P. E., Elder, J. T., Fellay, J., Carrington, M., Haas, D. W., Guo, X., Palmer, N. D., Chen, Y.-D. I., Rotter, J. I., Taylor, K. D., Rich, S., Correa, A., Wilson, J. G., Kathiresan, S., Cho, M., Metspalu, A., Esko, T., Okada, Y., Han, B., NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, , Mclaren, P. J., Raychaudhuri, S.
10.1101/2020.07.16.20155606 — Posted: 2020-07-18
Multimodal memory T cell profiling identifies a reduction in a polyfunctional Th17 state associated with tuberculosis progression
Nathan, A., Beynor, J. I., Baglaenko, Y., Suliman, S., Ishigaki, K., Asgari, S., Huang, C.-C., Luo, Y., Zhang, Z., Lopez Tamara, K., Jimenez, J., Calderon, R. I., Lecca, L., van Rhijn, I., Moody, B., Murray, M. B., Raychaudhuri, S.
10.1101/2020.04.23.057828 — Posted: 2020-04-25
De Novo Prediction of Human Chromosome Structures: Epigenetic Marking Patterns Encode Genome Architecture
Di Pierro, M., Cheng, R. R., Lieberman Aiden, E., Wolynes, P. G., Onuchic, J. N.
10.1101/173088 — Posted: 2017-08-07
Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling
Nir, G., Farabella, I., Perez Estrada, C., Ebeling, C. G., Beliveau, B. J., Sasaki, H. M., Lee, S. H., Nguyen, S. C., McCole, R. B., Chattoraj, S., Erceg, J., AlHaj Abed, J., Martins, N. M. C., Nguyen, H. Q., Hannan, M. A., Russell, S., Durand, N. C., Rao, S. S. P., Kishi, J. Y., Soler-Vila, P., Di Pierro, M., Onuchic, J. N., Callahan, S., Schreiner, J., Stuckey, J., Yin, P., Lieberman Aiden, E., Marti-Renom, M. A., Wu, C.- t.
10.1101/374058 — Posted: 2018-07-28

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