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Channel : ENCODE

92 Articles

Dissecting the regulatory activity and sequence content of loci with exceptional numbers of transcription factor associations
Ramaker, R. C., Hardigan, A. A., Goh, S.-T., Partridge, E. C., Wold, B., Cooper, S. J., Myers, R. M.
10.1101/2019.12.21.885830 — Posted: 2020-05-10
Long-TUC-seq is a robust method for quantification of metabolically labeled full-length isoforms
Rahmanian, S., Balderrama-Gutierrez, G., Wyman, D., McGill, C. J., Nguyen, K., Spitale, R., Mortazavi, A.
10.1101/2020.05.01.073296 — Posted: 2020-05-02
Swan: a library for the analysis and visualization of long-read transcriptomes
Reese, F., Mortazavi, A.
10.1101/2020.06.09.143024 — Posted: 2020-06-10
Detecting regulatory elements in high-throughput reporter assays
Kim, Y.-S., Jonhson, G. D., Seo, J., Barrera, A., Majoros, W. H., Ochoa, A., Allen, A. S., Reddy, T. E.
10.1101/2020.08.07.241901 — Posted: 2020-08-07
In silico integration of thousands of epigenetic datasets into 707 cell type regulatory annotations improves the trans-ethnic portability of polygenic risk scores
Amariuta, T., Ishigaki, K., Sugishita, H., Ohta, T., Matsuda, K., Murakami, Y., Price, A. L., Kawakami, E., Terao, C., Raychaudhuri, S.
10.1101/2020.02.21.959510 — Posted: 2020-02-28
Unique contribution of enhancer-driven and master-regulator genes to autoimmune disease revealed using functionally informed SNP-to-gene linking strategies
Dey, K. K., Gazal, S. K., van de Geijn, B., Kim, S. S., Nasser, J., Engreitz, J. M., Price, A.
10.1101/2020.09.02.279059 — Posted: 2020-09-03
Integrative approaches to improve the informativeness of deep learning models for human complex diseases
Dey, K. K., Kim, S. S., Gazal, S., Nasser, J., Engreitz, J. M., Price, A.
10.1101/2020.09.08.288563 — Posted: 2020-09-09
Genetic and Epigenetic Features of Promoters with Ubiquitous Chromatin Accessibility Support Ubiquitous Transcription of Cell-essential Genes
Fan, K., Moore, J. E., Zhang, X.-o., Weng, Z.
10.1101/2020.11.02.364869 — Posted: 2020-11-02
HiC-DC+: systematic 3D interaction calls and differential analysis for Hi-C and HiChIP
Sahin, M., Wong, W., Zhan, Y., Van Deynze, K., Koche, R., Leslie, C. S.
10.1101/2020.10.11.335273 — Posted: 2020-10-11
Genome-wide Identification of the Genetic Basis of Amyotrophic Lateral Sclerosis
Zhang, S., Cooper-Knock, J., Weimer, A. K., Shi, M., Moll, T., Harvey, C., Nezhad, H. G., Franklin, J., Souza, C. d. S., Wang, C., Li, J., Elhaik, E., Eitan, C., Hornstein, E., Kenna, K. P., Project MinE Sequencing Consortium, , Veldink, J., Ferraiuolo, L., Shaw, P. J., Snyder, M. P.
10.1101/2020.11.14.382606 — Posted: 2021-02-15

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