Channel:  ENCODE

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

141 Articles

3D Epigenomic Characterization Reveals Insights Into Gene Regulation and Lineage Specification During Corticogenesis
Song, M., Pebworth, M.-P., Yang, X., Abnousi, A., Fan, C., Wen, J., Rosen, J., Choudhary, M., Cui, X., Jones, I., Bergenholtz, S., Eze, U., Juric, I., Li, B., Maliskova, L., Liu, W., Pollen, A., Li, Y., Wang, T., Hu, M., Kriegstein, A., Shen, Y.
10.1101/2020.02.24.963652 — Posted: 2020-02-25
Global reference mapping and dynamics of human transcription factor footprints
Vierstra, J., Lazar, J., Sandstrom, R., Halow, J., Lee, K., Bates, D., Diegel, M., Dunn, D., Neri, F., Haugen, E., Rynes, E., Reynolds, A., Nelson, J., Johnson, A., Frerker, M., Buckley, M., Kaul, R., Meuleman, W., Stamatoyannopoulos, J. A.
10.1101/2020.01.31.927798 — Posted: 2020-02-01
TopicNet: a framework for measuring transcriptional regulatory network change
Lou, S., Li, T., Kong, X., Zhang, J., Liu, J., Lee, D., Gerstein, M.
10.1101/862177 — Posted: 2020-01-23
An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis
Xiang, G., Keller, C. A., Heuston, E. F., Giardine, B. M., An, L., Wixom, A. Q., Miller, A., Cockburn, A., Sauria, M. E. G., Weaver, K., Lichtenberg, J., Gottgens, B., Li, Q., Bodine, D., Mahony, S., Taylor, J., Blobel, G. A., Weiss, M. J., Cheng, Y., Yue, F., Hughes, J., Higgs, D. R., Zhang, Y., Hardison, R. C.
10.1101/731729 — Posted: 2020-01-12
The Gene-Rich Genome of the Scallop Pecten maximus
Kenny, N. J., McCarthy, S. A., Dudchenko, O., James, K., Betteridge, E., Corton, C., Dolucan, J., Mead, D., Oliver, K., Omer, A. D., Pelan, S., Ryan, Y., Sims, Y., Skelton, J., Smith, M., Torrance, J., Weisz, D., Wipat, A., Aiden, E. L., Howe, K., Williams, S. T.
10.1101/2020.01.08.887828 — Posted: 2020-01-09
Quantifying genetic effects on disease mediated by assayed gene expression levels
Yao, D. W., O'Connor, L. J., Price, A. L., Gusev, A.
10.1101/730549 — Posted: 2020-01-03
Chromosomal-level genome assembly of the scimitar-horned oryx: insights into diversity and demography of a species extinct in the wild
Humble, E., Dobrynin, P., Senn, H., Chuven, J., Scott, A. F., Mohr, D. W., Dudchenko, O., Omer, A. D., Colaric, Z., Lieberman Aiden, E., Wildt, D., Oliagi, S., Tamazian, G., Pukazhenthi, B., Ogden, R., Koepfli, K.-P.
10.1101/867341 — Posted: 2019-12-08
Index and biological spectrum of accessible DNA elements in the human genome
Meuleman, W., Muratov, A., Rynes, E., Halow, J., Lee, K., Bates, D., Diegel, M., Dunn, D., Neri, J., Teodosiadis, A., Reynolds, A., Haugen, E., Nelson, J. S., Johnson, A., Frerker, M., Buckley, M., Sandstrom, R., Vierstra, J., Kaul, R., Stamatoyannopoulos, J. A.
10.1101/822510 — Posted: 2019-11-15
Transcription imparts architecture, function, and logic to enhancer units
Tippens, N. D., Liang, J., Leung, K. Y., Ozer, A., Booth, J. G., Lis, J., Yu, H.
10.1101/818849 — Posted: 2019-11-07
A genome-wide almanac of co-essential modules assigns function to uncharacterized genes
Wainberg, M., Kamber, R. A., Balsubramani, A., Meyers, R. M., Sinnott-Armstrong, N., Hornburg, D., Jiang, L., Chan, J., Jian, R., Gu, M., Shcherbina, A., Dubreuil, M. M., Spees, K., Snyder, M. P., Kundaje, A., Bassik, M. C.
10.1101/827071 — Posted: 2019-11-03

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