Channel:  NCI Human Tumor Atlas Network

74 Articles

Spatial drivers and pre-cancer populations collaborate with the microenvironment in untreated and chemo-resistant pancreatic cancer
Cui Zhou, D., Jayasinghe, R. G., Herndon, J. M., Storrs, E., Mo, C.-K., Wu, Y., Fulton, R. S., Wyczalkowski, M. A., Fronick, C. C., Fulton, L. A., Thammavong, L., Sato, K., Zhu, H., Sun, H., Wang, L.-B., Li, Y., Zuo, C., McMichael, J. F., Davies, S. R., Appelbaum, E. L., Robbins, K. J., Chasnoff, S. E., Yang, X., Liu, R., Reeb, A. N., Wendl, M. C., Oh, C., Serasanambati, M., Lal, P., Varghese, R., Mashl, J. R., Ponce, J., Terekhanova, N. V., Naser Al Deen, N., Yao, L., Wang, F., Chen, L., Schnaubelt, M., Puram, S. V., Kim, A. H., Song, S.-K., Shoghi, K. I., Ju, T., Hawkins, W. G., Chen, K., Ch
10.1101/2021.01.13.426413 — Posted: 2021-01-14
Human colorectal pre-cancer atlas identifies distinct molecular programs underlying two major subclasses of pre-malignant tumors
Chen, B., McKinley, E. T., Simmons, A. J., Ramirez, M. A., Zhu, X., Southard-Smith, A. N., Markham, N. O., Sheng, Q., Drewes, J., Xu, Y., Heiser, C. N., Zhou, Y., Revetta, F., Berry, L. D., Zheng, W., Washington, M. K., Cai, Q., Sears, C. L., Goldenring, J. R., Franklin, J. L., Vandekar, S., Roland, J. T., Su, T., Huh, W. J., Liu, Q., Coffey, R. J., Shrubsole, M. J., Lau, K.
10.1101/2021.01.11.426044 — Posted: 2021-01-13
Transition to invasive breast cancer is associated with progressive changes in the structure and composition of tumor stroma
Risom, T., Glass, D. R., Liu, C. C., Rivero-Gutierrez, B., Baranski, A., McCaffrey, E. F., Greenwald, N. F., Kagel, A. C., Strand, S. H., Varma, S., Kong, A., Keren, L., Srivastava, S., Zhu, C., Khair, Z., Veis, D. J., Deschryver, K., Vennam, S., Maley, C., Hwang, E. S., Marks, J. R., Bendall, S. C., Colditz, G. A., West, R. B., Angelo, M.
10.1101/2021.01.05.425362 — Posted: 2021-01-06
Single-cell characterization of subsolid and solid lesions in the lung adenocarcinoma spectrum
Yanagawa, J., Tran, L. M., Fung, E., Wallace, W. D., Prosper, A. E., Fishbein, G. A., Shea, C., Hong, R., Liu, B., Salehi-Rad, R., Deng, J. Z., Gower, A., Campbell, J. D., Mazzilli, S. A., Beane, J., Kadara, H., Lenburg, M. E., Spira, A., Aberle, D. R., Krysan, K., Dubinett, S. M.
10.1101/2020.12.25.424416 — Posted: 2020-12-26
Single-cell multi-omics reveals elevated plasticity and stem-cell-like blasts relevant to the poor prognosis of KMT2A-rearranged leukemia
Chen, C., Yu, W., Alikarami, F., Qiu, Q., Chen, C.-h., Flournoy, J., Gao, P., Uzun, Y., Fang, L., Yu, Y., Zhu, Q., Wang, K., Libbrecht, C., Felmeister, A., Rozich, I., Ding, Y.-y., Hunger, S. P., Wu, H., Brown, P. A., Guest, E. M., Barrett, D. M., Bernt, K. M., Tan, K.
10.1101/2020.12.06.413930 — Posted: 2020-12-07
Single cell profiling reveals novel tumor and myeloid subpopulations in small cell lung cancer
Chan, J. M., Quintanal-Villalonga, A., Gao, V., Xie, Y., Allaj, V., Chaudhary, O., Masilionis, I., Egger, J., Chow, A., Walle, T., Mattar, M., Yarlagadda, D. V., Wang, J. L., Uddin, F., Offin, M., Ciampricotti, M., Bhanot, U. K., Lai, W. V., Bott, M. J., Jones, D. R., Ruiz, A., Hollmann, T., Poirier, J. T., Nawy, T., Mazutis, L., Sen, T., Pe'er, D., Rudin, C. M.
10.1101/2020.12.01.406363 — Posted: 2020-12-02
Automated quality control and cell identification of droplet-based single-cell data using dropkick
Heiser, C. N., Wang, V. M., Chen, B., Hughey, J. J., Lau, K. S.
10.1101/2020.10.08.332288 — Posted: 2020-10-09
Online narrative guides for illuminating tissue atlas data and digital pathology images
Rashid, R., Chen, Y.-A., Hoffer, J., Muhlich, J. L., Lin, J.-R., Krueger, R., Pfister, H., Mitchell, R., Santagata, S., Sorger, P.
10.1101/2020.03.27.001834 — Posted: 2020-08-19
Predictive modeling of single-cell DNA methylome data enhances integration with transcriptome data
Uzun, Y., Wu, H., Tan, K.
10.1101/2020.06.05.137000 — Posted: 2020-06-06
Expansion Sequencing: Spatially Precise In Situ Transcriptomics in Intact Biological Systems
Alon, S., Goodwin, D., Sinha, A., Wassie, A., Chen, F., Daugharthy, E., Bando, Y., Kajita, A., Xue, A., Marrett, K., Prior, R., Cui, Y., Payne, A., Yao, C.-C., Suk, H.-J., Wang, R., Yu, C.-C., Tillberg, P., Reginato, P., Pak, N., Liu, S., Punthambaker, S., Iyer, E., Kohman, R., Miller, J., Lein, E., Lako, A., Cullen, N., Rodig, S., Helvie, K., Abravanel, D., Wagle, N., Johnson, B., Klughammer, J., Slyper, M., Waldman, J., Jane-Valbuena, J., Rozenblatt-Rosen, O., Regev, A., Church, G., Marblestone, A., Boyden, E. S.
10.1101/2020.05.13.094268 — Posted: 2020-05-15

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