Channel:  NCI Human Tumor Atlas Network

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

72 Articles

Single-cell analyses reveal a continuum of cell state and composition changes in the malignant transformation of polyps to colorectal cancer
Becker, W. R., Nevins, S. A., Chen, D. C., Chiu, R., Horning, A., Laquindanum, R., Mills, M., Chaib, H., Ladabaum, U., Longacre, T., Shen, J., Esplin, E. D., Kundaje, A., Ford, J. M., Curtis, C., Snyder, M. P., Greenleaf, W. J.
10.1101/2021.03.24.436532 — Posted: 2021-03-25
The breast pre-cancer atlas illustrates the molecular and micro-environmental diversity of ductal carcinoma in situ
Nachmanson, D., Officer, A., Mori, H., Gordon, J., Evans, M. F., Steward, J., Yao, H., O'Keefe, T., Hasteh, F., Stein, G. S., Jepsen, K., Weaver, D. L., Hirst, G., Sprague, B. L., Esserman, L. J., Borowsky, A. D., Stein, J. L., Harismendy, O.
10.1101/2021.05.11.443641 — Posted: 2021-06-07
The spatial landscape of progression and immunoediting in primary melanoma at single cell resolution
Nirmal, A. J., Maliga, Z., Vallius, T., Quattrochi, B., Chen, A. A., Jacobson, C. A., Pelletier, R. J., Yapp, C., Arias-Camison, R., Chen, Y.-A., Lian, C. G., Murphy, G. F., Santagata, S., Sorger, P. K.
10.1101/2021.05.23.445310 — Posted: 2022-02-14
Stitching and registering highly multiplexed whole slide images of tissues and tumors using ASHLAR
Muhlich, J. L., Chen, Y.-A., Yapp, C., Russell, D. P. W., Santagata, S., Sorger, P. K.
10.1101/2021.04.20.440625 — Posted: 2022-04-25
UnMICST: Deep learning with real augmentation for robust segmentation of highly multiplexed images of human tissues
Yapp, C., Novikov, E., Jang, W.-D., Vallius, T., Chen, Y.-A., Cicconet, M., Maliga, Z., Jacobson, C. A., Wei, D., Santagata, S., Pfister, H., Sorger, P. K.
10.1101/2021.04.02.438285 — Posted: 2022-02-25
DCIS genomic signatures define biology and clinical outcome: Human Tumor Atlas Network (HTAN) analysis of TBCRC 038 and RAHBT cohorts
Strand, S. H., Rivero-Gutierrez, B., Houlahan, K. E., Seoane, J. A., King, L. M., Risom, T., Simpson, L. A., Vennam, S., Khan, A., Cisneros, L., Hardman, T., Harmon, B., Couch, F., Gallagher, K., Kilgore, M., Wei, S., DeMichele, A., King, T., McAuliffe, P. F., Nangia, J., Lee, J., Tseng, J., Storniolo, A. M., Thompson, A. M., Gupta, G. P., Burns, R., Veis, D. J., DeSchryver, K., Zhu, C., Matusiak, M., Wang, J., Zhu, S. X., Tappenden, J., Ding, D. Y., Zhang, D., Luo, J., Jiang, S., Varma, S., Anderson, L., Straub, C., Srivastava, S., Curtis, C., Tibshirani, R., Angelo, R. M., Hall, A., Owzar, K
10.1101/2021.06.16.448585 — Posted: 2022-06-23
SnFFPE-Seq: towards scalable single nucleus RNA-Seq of formalin-fixed paraffin-embedded (FFPE) tissue
Chung, H., Melnikov, A., McCabe, C., Drokhlyansky, E., Van Wittenberghe, N., Magee, E. M., Waldman, J., Spira, A., Chen, F., Mazzilli, S., Rozenblatt-Rosen, O., Regev, A.
10.1101/2022.08.25.505257 — Posted: 2022-08-25
Integrated Molecular Characterization of Intraductal Papillary Mucinous Neoplasms: An NCI Cancer Moonshot Precancer Atlas Pilot Project
Semaan, A., Bernard, V., Wong, J., Makino, Y., Swartzlander, D., Rajapakshe, K. I., Lee, J., Officer, A., Schmidt, C. M., Wu, H. H., Scaife, C. L., Affolter, K. E., Nachmanson, D., Firpo, M. A., Yip-Schneider, M., Lowy, A. M., Harismendy, O., Sen, S., Maitra, A. A., Jakubek, Y. A., Guerrero, P. A.
10.1101/2022.10.14.512148 — Posted: 2022-10-18
SlideCNA: Spatial copy number alteration detection from Slide-seq-like spatial transcriptomics data
Zhang, D. K., Segerstolpe, A., Slyper, M., Waldman, J., Murray, E., Cohen, O., Ashenberg, O., Abravanel, D., Jane-Valbuena, J., Mages, S., Lako, A., Helvie, K., Rozenblatt-Rosen, O., Rodig, S., Chen, F., Wagle, N., Regev, A., Klughammer, J.
10.1101/2022.11.25.517982 — Posted: 2022-11-27
SEG: Segmentation Evaluation in absence of Ground truth labels
Sims, Z., Strgar, L., Thirumalaisamy, D., Heussner, R., Thibault, G., Chang, Y. H.
10.1101/2023.02.23.529809 — Posted: 2023-02-24

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