Channel:  Human Cell Atlas

185 Articles

Scalable querying of human cell atlases via a foundational model reveals commonalities across fibrosis-associated macrophages
Heimberg, G., Kuo, T. C., DePianto, D., Heigl, T., Diamant, N., Salem, O., Scalia, G., Biancalani, T., Rock, J., Turley, S., Corrada Bravo, H., Kaminker, J., Vander Heiden, J. A., Regev, A.
10.1101/2023.07.18.549537 — Posted: 2023-08-26
Polybacterial intracellular coinfection of epithelial stem cells in periodontitis
Easter, Q. T., Matuck, B. F., Stark, G. B., Worth, C. L., Predeus, A. V., Fremin, B., Huynh, K. T., Ranganathan, V., Pereira, D., Weaver, T., Miller, K., Perez, P., Hasuike, A., Chen, Z., Bush, M., Qu, X., Warner, B. M., Lee, J., Wallet, S. M., Sequeira, I., Tyc, K. M., Liu, J., Ko, K. I., Teichmann, S. A., Byrd, K. M.
10.1101/2023.08.23.554343 — Posted: 2023-08-24
multiDGD: A versatile deep generative model for multi-omics data
Schuster, V., Dann, E., Krogh, A., Teichmann, S.
10.1101/2023.08.23.554420 — Posted: 2023-08-23
Spatiotemporal molecular dynamics of the developing human thalamus
Kim, C., Shin, D., Wang, A., Nowakowski, T.
10.1101/2023.08.21.554174 — Posted: 2023-08-22
Consensus prediction of cell type labels with popV
Ergen, C., Xing, G., Xu, C., Jayasuriya, M., McGeever, E., Pisco, A. O., Streets, A. M., Yosef, N.
10.1101/2023.08.18.553912 — Posted: 2023-08-21
Identification of novel myeloid-derived cell states with implication in cancer outcome
Guimaraes, G. R., Maklouf, G. R., Teixeira, C. E., de Oliveira Santos, L., Tessarollo, N. G., Pretti, M. A. M., Toledo, N. E., da Cruz, J. G. V., Falchetti, M., Dimas, M. M., Serain, A. F., de Macedo, F. C., Rodrigues, F. R., Bastos, N. C., da Silva, J. L., Lummertz-Rocha, E., Chaves, C. B. P., de Melo, A. C., Moraes-Vieira, P. M. M., Mori, M. A., Boroni, M.
10.1101/2023.01.04.522727 — Posted: 2023-08-10
GRouNdGAN: GRN-guided simulation of single-cell RNA-seq data using causal generative adversarial networks
Zinati, Y., Takiddeen, A., Emad, A.
10.1101/2023.07.25.550225 — Posted: 2023-07-31
Expansion of profibrotic monocyte-derived alveolar macrophages in patients with persistent respiratory symptoms and radiographic abnormalities after COVID-19
Bailey, J. I., Puritz, C. H., Senkow, K. J., Markov, N. S., Diaz, E., Jonasson, E., Yu, Z., Swaminathan, S., Lu, Z., Fenske, S., Grant, R. A., Abdala-Valencia, H., Mylvaganam, R. J., Miller, J., Cumming, R. I., Tighe, R. M., Gowdy, K. M., Kalhan, R., Jain, M., Bharat, A., Kurihara, C., San Jose Estepar, R., San Jose Estepar, R., Washko, G. R., Shilatifard, A., Sznajder, J. I., Ridge, K. M., Budinger, G. S., Braun, R., Misharin, A. V., Sala, M. A.
10.1101/2023.07.30.551145 — Posted: 2023-07-31
Building a learnable universal coordinate system for single-cell atlas with a joint-VAE model
Gao, H., Hua, K., Wei, L., Wu, X., Chen, S., Yin, Q., Jiang, R., Zhang, X.
10.1101/2021.09.09.459281 — Posted: 2023-07-30
Deciphering the spatio-temporal transcriptional and chromatin accessibility of human retinal organoid development at the single cell level
Dorgau, B., Collin, J., Rozanska, A., Boczonadi, V., MoyaMolina, M., Hussain, R., Coxhead, J., Dhanaseelan, T., Armstrong, L., Queen, R., Lako, M.
10.1101/2023.07.19.549507 — Posted: 2023-07-19

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