Channel: European Molecular Biology Laboratory (EMBL)

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

335 Articles

Distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data

Lun, A., Riesenfeld, S., Andrews, T., Dao, T. P., Gomes, T., participants in the 1st Human Cell Atlas Jamboree, , Marioni, J.

10.1101/234872 — Posted: 2018-12-05

Super-resolution fight club: A broad assessment of 2D & 3D single-molecule localization microscopy software

Sage, D., Pham, T.-A., Babcock, H., Lukes, T., Pengo, T., Chao, J., Velmurugan, R., Herbert, A., Agrawal, A., Colabrese, S., Wheeler, A., Archetti, A., Rieger, B., Ober, R., Hagen, G. M., Sibarita, J.-B., Ries, J., Henriques, R., Unser, M., Holden, S.

10.1101/362517 — Posted: 2018-12-01

Quantification of differential transcription factor activity and multiomics-based classification into activators and repressors: diffTF

Berest, I., Arnold, C., Reyes-Palomares, A., Palla, G., Rasmussen, K. D., Helin, K., Zaugg, J.

10.1101/368498 — Posted: 2018-12-01

Cardelino: Integrating whole exomes and single-cell transcriptomes to reveal phenotypic impact of somatic variants

McCarthy, D. J., Rostom, R., Huang, Y., Kunz, D. J., Danecek, P., Bonder, M. J., Hagai, T., HipSci Consortium, , Wang, W., Gaffney, D. J., Simons, B. D., Stegle, O., Teichmann, S. A.

10.1101/413047 — Posted: 2018-11-26

Protein inference using PIA workflows and PSI standard file formats

Uszkoreit, J., Perez-Riverol, Y., Eggers, B., Marcus, K., Eisenacher, M.

10.1101/424473 — Posted: 2018-11-21

Topological data analysis quantifies biological nano-structure from single molecule localization microscopy

Pike, J. A., Khan, A. O., Pallini, C., Thomas, S. G., Mund, M., Ries, J., Poulter, N. S., Styles, I. B.

10.1101/400275 — Posted: 2018-11-13

Combined single-cell profiling of expression and DNA methylation reveals splicing regulation and heterogeneity

Linker, S. M., Urban, L., Clark, S., Chhatriwala, M., Amatya, S., McCarthy, D., Ebersberger, I., Vallier, L., Reik, W., Stegle, O., Bonder, M. J.

10.1101/328138 — Posted: 2018-11-06

Iron deficiency affects early stages of embryonic hematopoiesis but not the endothelial to hematopoietic transition

Shvartsman, M., Bilican, S., Lancrin, C.