bioRxiv/medRxiv TRiP Review Activity

684 Reviews — All Partners — Microbiology

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Efficiently processing amplicon sequencing data for microbial ecology with dadasnake, a DADA2 implementation in Snakemake
Weissbecker, C., Schnabel, B., Heintz-Buschart, A.
10.1101/2020.05.17.095679 — Posted: 2020-05-19 — Discussion: 2022-01-24  GigaScience
NanoAmpli-Seq: A workflow for amplicon sequencing from mixed microbial communities on the nanopore sequencing platform
Calus, S. T., Ijaz, U. Z., Pinto, A. J.
10.1101/244517 — Posted: 2018-01-07 — Discussion: 2022-01-22  GigaScience
Sensitive visualization of SARS-CoV-2 RNA with CoronaFISH
Rensen, E. I., Pietropaoli, S., Weber, C., Souquere, S., Isnard, P., Rabant, M., Gibier, J.-B., Simon-Loriere, E., Rameix-Welti, M.-A., Pierron, G., Mueller, F., Barba-Spaeth, G., Zimmer, C.
10.1101/2021.02.04.429604 — Posted: 2021-02-04 — Discussion: 2022-01-21  EMBO Press
Inhibiting Host Protein Deposition on Urinary Catheters Reduces Urinary Tract Infections
Andersen, M. J., Fong, C., LaBella, A. A., Molesan, A. J., Champion, M. M., Howell, C., Flores-Mireles, A. L.
10.1101/2021.12.07.471578 — Posted: 2021-12-07 — Discussion: 2022-01-21  eLife
Multi-Locus And Ultra-Long Amplicon Sequencing Approach To Study Microbial Diversity At Species Level Using The MinION™ Portable Nanopore Sequencer
Benitez-Paez, A., Sanz, Y.
10.1101/117143 — Posted: 2017-03-15 — Discussion: 2022-01-13  GigaScience
A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation
Sternes, P. R., Lee, D., Kutyna, D. R., Borneman, A. R.
10.1101/098061 — Posted: 2017-01-10 — Discussion: 2022-01-13  GigaScience
Helical Ordering of Envelope Associated Proteins and Glycoproteins in Respiratory Syncytial Virus Filamentous Virions
Conley, M. J., Short, J. M., Hutchings, J., Burns, A. M., Streetley, J., Bakker, S. E., Jaffery, H., Stewart, M., Power, B. J., Zanetti, G., Fearns, R., Vijayakrishnan, S., Bhella, D.
10.1101/2021.08.04.455049 — Posted: 2021-08-04 — Discussion: 2022-01-11  EMBO Press
Immunometabolic hijacking of immune cells by a Pseudomonas aeruginosa quorum-sensing signal
Bandyopadhaya, A., Singh, V. K., Chakraborty, A., Tzika, A. A., Rahme, L. G.
10.1101/2021.10.03.462785 — Posted: 2021-10-03 — Discussion: 2022-01-04  eLife
Species-level resolution of 16S rRNA gene amplicons sequenced through MinIONTM portable nanopore sequencer
Alfonso Benitez-Paez, Kevin Portune, Yolanda Sanz
10.1101/021758 — Posted: 2015-07-01 — Discussion: 2022-01-03  GigaScience
B.1.1.7 and B.1.351 SARS-CoV-2 variants display enhanced Spike-mediated fusion
Rajah, M. M., Hubert, M., Bishop, E., Saunders, N., Robinot, R., Grzelak, L., Planas, D., Zivaljic, M., Planchais, C., Guivel-Benhassine, F., Porrot, F., Mouquet, H., Chakrabarti, L., Buchrieser, J., Schwartz, O.
10.1101/2021.06.11.448011 — Posted: 2021-06-11 — Discussion: 2021-12-31  EMBO Press

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