bioRxiv/medRxiv TRiP Review Activity

667 Reviews — All Partners — Microbiology

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Efficiently processing amplicon sequencing data for microbial ecology with dadasnake, a DADA2 implementation in Snakemake
Weissbecker, C., Schnabel, B., Heintz-Buschart, A.
10.1101/2020.05.17.095679 — Posted: 2020-05-19 — Discussion: 2022-01-24  GigaScience
Community composition and development of the post-weaning piglet gut microbiome
Gaio, D., DeMaere, M. Z., Anantanawat, K., Eamens, G. J., Liu, M., Zingali, T., Falconer, L., Chapman, T. A., Djordjevic, S. P., Darling, A. E.
10.1101/2020.07.20.211326 — Posted: 2020-07-20 — Discussion: 2022-01-24  GigaScience
Scientometric Trends for Coronaviruses and Other Emerging Viral Infections
Kagan, D., Moran-Gilad, J., Fire, M.
10.1101/2020.03.17.995795 — Posted: 2020-03-20 — Discussion: 2022-01-24  GigaScience
A catalog of microbial genes from the bovine rumen reveals the determinants of herbivory
Li, J., Zhong, H., Ramayo-Caldas, Y., Terrapon, N., Lombard, V., Potocki-Veronese, G., Estelle-Fabrellas, J., Popova, M., Yang, Z., Zhang, H., Li, F., Tang, S., Chen, W., Chen, B., Li, J., Guo, J., Martin, C., Maguin, E., Xu, X., Yang, H., Wang, J., Madsen, L., Kristiansen, K., Henrissat, B., Ehrlich, S. D., Morgavi, D. P.
10.1101/272690 — Posted: 2018-02-27 — Discussion: 2022-01-24  GigaScience
NanoAmpli-Seq: A workflow for amplicon sequencing from mixed microbial communities on the nanopore sequencing platform
Calus, S. T., Ijaz, U. Z., Pinto, A. J.
10.1101/244517 — Posted: 2018-01-07 — Discussion: 2022-01-22  GigaScience
Inhibiting Host Protein Deposition on Urinary Catheters Reduces Urinary Tract Infections
Andersen, M. J., Fong, C., LaBella, A. A., Molesan, A. J., Champion, M. M., Howell, C., Flores-Mireles, A. L.
10.1101/2021.12.07.471578 — Posted: 2021-12-07 — Discussion: 2022-01-21  eLife
Sensitive visualization of SARS-CoV-2 RNA with CoronaFISH
Rensen, E. I., Pietropaoli, S., Weber, C., Souquere, S., Isnard, P., Rabant, M., Gibier, J.-B., Simon-Loriere, E., Rameix-Welti, M.-A., Pierron, G., Mueller, F., Barba-Spaeth, G., Zimmer, C.
10.1101/2021.02.04.429604 — Posted: 2021-02-04 — Discussion: 2022-01-21  EMBO Press
Multi-Locus And Ultra-Long Amplicon Sequencing Approach To Study Microbial Diversity At Species Level Using The MinION™ Portable Nanopore Sequencer
Benitez-Paez, A., Sanz, Y.
10.1101/117143 — Posted: 2017-03-15 — Discussion: 2022-01-13  GigaScience
A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation
Sternes, P. R., Lee, D., Kutyna, D. R., Borneman, A. R.
10.1101/098061 — Posted: 2017-01-10 — Discussion: 2022-01-13  GigaScience
Helical Ordering of Envelope Associated Proteins and Glycoproteins in Respiratory Syncytial Virus Filamentous Virions
Conley, M. J., Short, J. M., Hutchings, J., Burns, A. M., Streetley, J., Bakker, S. E., Jaffery, H., Stewart, M., Power, B. J., Zanetti, G., Fearns, R., Vijayakrishnan, S., Bhella, D.
10.1101/2021.08.04.455049 — Posted: 2021-08-04 — Discussion: 2022-01-11  EMBO Press

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