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525 Reviews — All Partners — Biophysics

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Distinct Activation Mechanisms of CXCR4 and ACKR3 Revealed by Single-Molecule Analysis of their Conformational Landscapes
Schafer, C. T., Pauszek, R. F., Gustavsson, M., Handel, T. M., Millar, D. P.
10.1101/2023.10.31.564925 — Posted: 2023-11-02 — Discussion: 2025-03-11  eLife
Elucidating the Mechanism Underlying UBA7-UBE2L6 Disulfide Complex Formation
Chen, P.-T., Yeh, J.-Y., Weng, J.-H., Wu, K.-P.
10.1101/2024.11.07.622398 — Posted: 2024-11-08 — Discussion: 2025-03-10  eLife
Progressive chromosome shape changes during cell divisions, recapitulated by loop capture simulations
Kakui, Y., Kusano, Y., Clarence, T., Lopez, M., Hirota, T., Khatri, B. S., Uhlmann, F.
10.1101/2024.11.19.623756 — Posted: 2024-11-20 — Discussion: 2025-03-09  Review Commons
A differentiable Gillespie algorithm for simulating chemical kinetics, parameter estimation, and designing synthetic biological circuits
Rijal, K., Mehta, P.
10.1101/2024.07.07.602397 — Posted: 2024-07-10 — Discussion: 2025-02-24  eLife
Structure and Cl-Conductance Properties of the Open State of Human CFTR
Zeng, Z. W., Ing, C. E., Pomes, R.
10.1101/2024.12.08.627282 — Posted: 2024-12-09 — Discussion: 2025-02-21  eLife
Thermodynamic framework for nonequilibrium self-assembly of branched actin networks
Rennert, E., Vaikuntanathan, S.
10.1101/2023.11.19.567734 — Posted: 2023-11-19 — Discussion: 2025-02-21  eLife
A conformational fingerprint for amyloidogenic light chains.
Paissoni, C., Puri, S., BROGGINI, L., Sriramoju, M. K., Maritan, M., Russo, R., Speranzini, V., Ballabio, F., Nuvolone, M., Merlini, G., Palladini, G., Hsu, S.-T. D., Ricagno, S., Camilloni, C.
10.1101/2024.07.12.603200 — Posted: 2024-07-13 — Discussion: 2025-02-20  eLife
Compound Mutations in the Abl1 Kinase Cause Inhibitor Resistance by Shifting DFG Flip Mechanisms and Relative State Populations
Monteiro da Silva, G., Lam, K., Dalgarno, D. C., Rubenstein, B. M.
10.1101/2024.05.23.595569 — Posted: 2024-05-26 — Discussion: 2025-02-12  eLife
Reliable protein-protein docking with AlphaFold, Rosetta and replica-exchange
Harmalkar, A., Lyskov, S., Gray, J. J.
10.1101/2023.07.28.551063 — Posted: 2023-07-29 — Discussion: 2025-01-31  eLife
Mechanism of expanded DNA recognition in xCas9
Hossain, K. A., Nierzwicki, L., Orozco, M., Czub, J., Palermo, G.
10.1101/2024.08.26.609653 — Posted: 2024-08-27 — Discussion: 2025-01-30  eLife

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