bioRxiv/medRxiv TRiP Review Activity

515 Reviews — All Partners — Biophysics

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A differentiable Gillespie algorithm for simulating chemical kinetics, parameter estimation, and designing synthetic biological circuits
Rijal, K., Mehta, P.
10.1101/2024.07.07.602397 — Posted: 2024-07-10 — Discussion: 2025-02-24  eLife
Structure and Cl-Conductance Properties of the Open State of Human CFTR
Zeng, Z. W., Ing, C. E., Pomes, R.
10.1101/2024.12.08.627282 — Posted: 2024-12-09 — Discussion: 2025-02-21  eLife
Thermodynamic framework for nonequilibrium self-assembly of branched actin networks
Rennert, E., Vaikuntanathan, S.
10.1101/2023.11.19.567734 — Posted: 2023-11-19 — Discussion: 2025-02-21  eLife
A conformational fingerprint for amyloidogenic light chains.
Paissoni, C., Puri, S., BROGGINI, L., Sriramoju, M. K., Maritan, M., Russo, R., Speranzini, V., Ballabio, F., Nuvolone, M., Merlini, G., Palladini, G., Hsu, S.-T. D., Ricagno, S., Camilloni, C.
10.1101/2024.07.12.603200 — Posted: 2024-07-13 — Discussion: 2025-02-20  eLife
Compound Mutations in the Abl1 Kinase Cause Inhibitor Resistance by Shifting DFG Flip Mechanisms and Relative State Populations
Monteiro da Silva, G., Lam, K., Dalgarno, D. C., Rubenstein, B. M.
10.1101/2024.05.23.595569 — Posted: 2024-05-26 — Discussion: 2025-02-12  eLife
Reliable protein-protein docking with AlphaFold, Rosetta and replica-exchange
Harmalkar, A., Lyskov, S., Gray, J. J.
10.1101/2023.07.28.551063 — Posted: 2023-07-29 — Discussion: 2025-01-31  eLife
Mechanism of expanded DNA recognition in xCas9
Hossain, K. A., Nierzwicki, L., Orozco, M., Czub, J., Palermo, G.
10.1101/2024.08.26.609653 — Posted: 2024-08-27 — Discussion: 2025-01-30  eLife
PROTAC-induced Protein Functional Dynamics in Targeted Protein Degradation
Chang, C.-e. A., Wu, K. Y., Hung, T. I.
10.1101/2024.05.05.592590 — Posted: 2024-05-05 — Discussion: 2025-01-30  eLife
Tension-induced suppression of allosteric conformational changes explains coordinated stepping of kinesin-1
Makino, T., Kanada, R., Mori, T., Miyazono, K.-i., Komori, Y., Yanagisawa, H., Takada, S., Tanokura, M., Kikkawa, M., Tomishige, M.
10.1101/2024.09.19.613825 — Posted: 2024-09-19 — Discussion: 2025-01-30  Review Commons
Cell-cycle and Age-Related Modulations in Mouse Chromosome Stiffness
Liu, N., Qiang, W., Jordan, P., Marko, J. F., Qiao, H.
10.1101/2024.03.06.583771 — Posted: 2024-03-11 — Discussion: 2025-01-28  eLife

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