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Biophysics-based protein language models for protein engineering
Gelman, S., Johnson, B., Freschlin, C., D'Costa, S., Gitter, A., Romero, P. A.
10.1101/2024.03.15.585128 — Posted: 2024-03-17 — Discussion: 2025-02-07  Arcadia Science
Chemical codes promote selective compartmentalization of proteins
Kilgore, H., Chinn, I., Mikhael, P., Mitnikov, I., Van Dongen, C., Zylberberg, G., Afeyan, L., Banani, S., Wilson-Hawken, S., Lee, T., Barzialy, R., Young, R.
10.1101/2024.04.15.589616 — Posted: 2024-04-17 — Discussion: 2025-02-07  Arcadia Science
Planktonic oyster larvae optimize settlement decisions in complex sensory landscapes
Schmidlin, S., Treherne, Y., Mees, J., Hablutzel, P.
10.1101/2024.11.28.625415 — Posted: 2024-12-03 — Discussion: 2025-02-07  Arcadia Science
ARBEL: A Machine Learning Tool with Light-Based Image Analysis for Automatic Classification of 3D Pain Behaviors
Barkai, O., Zhang, B., Lenfers Turnes, B., Arab, M., Zhang, Z., Yarmolinsky, D. A., Barrett, L. B., Woolf, C. J.
10.1101/2024.12.01.625907 — Posted: 2024-12-02 — Discussion: 2025-02-07  Arcadia Science
MuSpAn: A Toolbox for Multiscale Spatial Analysis
Bull, J. A., Moore, J. W., Mulholland, E. J., Leedham, S. J., Byrne, H. M.
10.1101/2024.12.06.627195 — Posted: 2024-12-08 — Discussion: 2025-02-07  Arcadia Science
Discovery of Expression-Governing Residues in Proteins
Jiang, F., Li, M., Wu, B., Zhang, L., Zhong, B., Yu, Y., Hong, L.
10.1101/2025.01.06.631498 — Posted: 2025-01-07 — Discussion: 2025-02-07  Arcadia Science
Cell-free protein synthesis as a method to rapidly screen machine learning-directed protease variants
Thornton, E. L., Boyle, J. T., Laohakunakorn, N., Regan, L.
10.1101/2025.01.24.634768 — Posted: 2025-01-25 — Discussion: 2025-02-07  Arcadia Science
A transcriptional control model for doublesex-dependent sex differentiation in Nasonia wasps
Guerra, F., Rougeot, J., Verhulst, E. C.
10.1101/2025.02.03.636189 — Posted: 2025-02-03 — Discussion: 2025-02-07  Arcadia Science
Brain size dependent speciation and extinction rates in birds and the cognitive buffer hypothesis
Oyston, J. W., May, M. R., Felice, R. N.
10.1101/2025.02.04.634049 — Posted: 2025-02-05 — Discussion: 2025-02-07  Arcadia Science
RAB18 Orchestrates Signaling Protein Ciliary Homeostasis by Facilitating BBSome Diffusion through the Transition Zone for Ciliary Entry
Sun, W.-Y., Zhang, J., Wei, Y., Zhao, L. S., Fan, Z.-C.
10.1101/2025.02.04.636545 — Posted: 2025-02-05 — Discussion: 2025-02-07  Arcadia Science

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