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Human milk variation is shaped by maternal genetics and impacts the infant gut microbiome
Johnson, K. E., Heisel, T., Allert, M., Furst, A., Yerabandi, N., Knights, D., Jacobs, K. M., Lock, E. F., Bode, L., Fields, D. A., Rudolph, M. C., Gale, C. A., Albert, F. W., Demerath, E. W., Blekhman, R.
10.1101/2023.01.24.525211 — Posted: 2023-01-25 — Discussion: 2025-02-25  
Functional and evolutionary significance of unknown genes from uncultivated taxa
Rodriguez del Rio, A., Giner-Lamia, J., Cantalapiedra, C. P., Botas, J., Deng, Z., Hernandez-Plaza, A., Paoli, L., Schmidt, T. S., Sunagawa, S., Bork, P., Coelho, L. P., Huerta-Cepas, J.
10.1101/2022.01.26.477801 — Posted: 2022-01-27 — Discussion: 2025-02-25  
Personalized Clostridioides difficile engraftment risk prediction and probiotic therapy assessment in the human gut.
Carr, A., Baliga, N. S., Diener, C., Gibbons, S. M.
10.1101/2023.04.28.538771 — Posted: 2023-04-29 — Discussion: 2025-02-25  
BugSigDB: accelerating microbiome research through systematic comparison to published microbial signatures
Geistlinger, L., Mirzayi, C., Zohra, F., Azhar, R., Elsafoury, S., Grieve, C., Wokaty, J., Gamboa-Tuz, S. D., Sengupta, P., Hecht, I., Ravikrishnan, A., Goncalves, R., Franzosa, E., Raman, K., Carey, V., Dowd, J. B., Jones, H. E., Davis, S., Segata, N., Huttenhower, C., Waldron, L.
10.1101/2022.10.24.22281483 — Posted: 2022-10-26 — Discussion: 2025-02-25  
A novel taurine-respiring murine gut bacterium contributes to colonization resistance against enteropathogens
Ye, H., Borusak, S., Eberl, C., Hanson, B. T., Zwirzitz, B., Herbold, C., Pjevac, P., Hausmann, B., Stecher, B., Schleheck, D., Loy, A.
10.1101/2022.10.05.510937 — Posted: 2022-10-05 — Discussion: 2025-02-25  
Viroid-like colonists of human microbiomes
Zheludev, I. N., Edgar, R. C., Galiano, M. J. L., De la Pena, M., Babaian, A., Bhatt, A. S., Fire, A. Z.
10.1101/2024.01.20.576352 — Posted: 2024-01-21 — Discussion: 2025-02-25  
Short- and long-read metagenomics of South African gut microbiomes reveal a transitional composition and novel taxa
Tamburini, F. B., Maghini, D., Oduaran, O. H., Brewster, R., Hulley, M. R., Sahibdeen, V., Norris, S. A., Tollman, S., Kahn, K., Wagner, R., Wade, A. N., Wafawanaka, F., Gomez-Olive, X., Twine, R., Lombard, Z., Hazelhurst, S., Bhatt, A. S.
10.1101/2020.05.18.099820 — Posted: 2020-05-19 — Discussion: 2025-02-25  
Microdiversity of the Vaginal Microbiome is Associated with Preterm Birth
Liao, J., Shenhav, L., Serrano, M., Zhu, B., Buck, G. A., Korem, T.
10.1101/2023.01.13.523991 — Posted: 2023-01-17 — Discussion: 2025-02-25  
Detailed Social Network Interactions and Gut Microbiome Strain-Sharing Within Isolated Honduras Villages
Pullman, J., Beghini, F., Alexander, M., Vishnempet Shridhar, S., Prinster, D., Brito, I. L., Christakis, N. A.
10.1101/2023.04.06.535875 — Posted: 2023-04-07 — Discussion: 2025-02-25  
Genome-centric analysis of short and long read metagenomes reveals uncharacterized microbiome diversity in Southeast Asians
Emmanuel, J.-S. E., Chia, M., Bertrand, D., Saw, W.-Y., Ravikrishnan, A., Low, A., Ding, Y., Ng, A., Tan, L. W. L., Teo, Y.-Y., Seedorf, H., Nagarajan, N.
10.1101/2022.05.05.490740 — Posted: 2022-05-05 — Discussion: 2025-02-25  

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