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Viroid-like colonists of human microbiomes
Zheludev, I. N., Edgar, R. C., Galiano, M. J. L., De la Pena, M., Babaian, A., Bhatt, A. S., Fire, A. Z.
10.1101/2024.01.20.576352 — Posted: 2024-01-21 — Discussion: 2025-02-25  
Microdiversity of the Vaginal Microbiome is Associated with Preterm Birth
Liao, J., Shenhav, L., Serrano, M., Zhu, B., Buck, G. A., Korem, T.
10.1101/2023.01.13.523991 — Posted: 2023-01-17 — Discussion: 2025-02-25  
Genome-centric analysis of short and long read metagenomes reveals uncharacterized microbiome diversity in Southeast Asians
Emmanuel, J.-S. E., Chia, M., Bertrand, D., Saw, W.-Y., Ravikrishnan, A., Low, A., Ding, Y., Ng, A., Tan, L. W. L., Teo, Y.-Y., Seedorf, H., Nagarajan, N.
10.1101/2022.05.05.490740 — Posted: 2022-05-05 — Discussion: 2025-02-25  
Detailed Social Network Interactions and Gut Microbiome Strain-Sharing Within Isolated Honduras Villages
Pullman, J., Beghini, F., Alexander, M., Vishnempet Shridhar, S., Prinster, D., Brito, I. L., Christakis, N. A.
10.1101/2023.04.06.535875 — Posted: 2023-04-07 — Discussion: 2025-02-25  
The prevalence of Fusobacterium nucleatum subspecies in the oral cavity stratifies by local health status
Krieger, M., AbdelRahman, Y. M., Choi, D., Palmer, E. A., Yoo, A., McGuire, S., Kreth, J., Merritt, J.
10.1101/2023.10.25.563997 — Posted: 2023-10-26 — Discussion: 2025-02-25  
Metabolic diversity in commensal protists regulates intestinal immunity and trans-kingdom competition
Gerrick, E. R., Zlitni, S., West, P. T., Mechler, C. M., Li, J. A., Higginbottom, S. K., Severyn, C. J., Kracke, F., Spormann, A. M., Sonnenburg, J. L., Bhatt, A. S., Howitt, M. R.
10.1101/2022.08.26.505490 — Posted: 2022-08-27 — Discussion: 2025-02-25  
Giant extrachromosomal element "Inocle" potentially expands the adaptive capacity of the human oral microbiome
Kiguchi, Y., Hamamoto, N., Kashima, Y., Runtuwene, L. R., Ishizaka, A., Kuze, Y., Enokida, T., Tanaka, N., Tahara, M., Kageyama, S.-I., Fujisawa, T., Yamashita, R., Kanai, A., Tuda, J. S. B., Mizutani, T., Suzuki, Y.
10.1101/2024.09.30.615745 — Posted: 2024-10-01 — Discussion: 2025-02-25  
The darkest place is under the candlestick - healthy urogenital tract as a source of UTI-related Escherichia coli lineages
Ksiezarek, M., Novais, A., Peixe, L.
10.1101/2021.08.06.455400 — Posted: 2021-08-06 — Discussion: 2025-02-25  
A catalogue of small proteins from the global microbiome
Duan, Y., Santos Junior, C. D., Schmidt, T. S. B., Fullam, A., de Almeida, B. L. S., Zhu, C., Michael, K., Zhao, X.-M., Bork, P., Coelho, L. P.
10.1101/2023.12.27.573469 — Posted: 2023-12-28 — Discussion: 2025-02-25  
Exposure to environmental stress decreases the resistance of river microbial communities towards invasion by antimicrobial resistant bacteria
Bagra, K., Bellanger, X., Merlin, C., Singh, G., Berendonk, T. U., Klümper, U.
10.1101/2022.11.19.517188 — Posted: 2022-11-19 — Discussion: 2025-02-25  

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