Channel:  Harvard Program in Therapeutic Sciences

119 Articles

Gilda: biomedical entity text normalization with machine-learned disambiguation as a service
Gyori, B. M., Hoyt, C. T., Steppi, A.
10.1101/2021.09.10.459803 — Posted: 2021-09-11
STonKGs: A Sophisticated Transformer Trained on Biomedical Text and Knowledge Graphs
Balabin, H., Hoyt, C. T., Birkenbihl, C., Gyori, B. M., Bachman, J. A., Tom Kodamullil, A., Ploeger, P. G., Hofmann-Apitius, M., Domingo-Fernandez, D.
10.1101/2021.08.17.456616 — Posted: 2021-08-18
A LINCS microenvironment perturbation resource for integrative assessment of ligand-mediated molecular and phenotypic responses
Gross, S. M., Dane, M. A., Smith, R. L., Devlin, K., Mclean, I., Derrick, D., Mills, C., Subramanian, K., London, A., Torre, D., Erdem, C., Lyons, N., Natoli, T., Pessa, S., Lu, X., Mullahoo, J., Li, J., Adam, M., Wassie, B., Liu, M., Kilburn, D. F., Liby, T., Bucher, E., Sanchez-Aguila, C., Daily, K., Omberg, L., Wang, Y., Jacobson, C., Yapp, C., Chung, M., Vidovic, D., Lu, Y., Schurer, S., Lee, A., Pillai, A., Subramanian, A., Papanastasiou, M., Fraenkel, E., Feiler, H., Mills, G. B., Jaffe, J., Ma'ayan, A., Birtwistle, M. R., Sorger, P. K., Korkola, J. E., Gray, J. W., Heiser, L. M.
10.1101/2021.08.06.455429 — Posted: 2021-08-09
Integrating multi-omics data reveals function and therapeutic potential of deubiquitinating enzymes
Doherty, L. M., Mills, C. E., Boswell, S. A., Liu, X., Hoyt, C. T., Gyori, B. M., Buhrlage, S. J., Sorger, P. K.
10.1101/2021.08.06.455458 — Posted: 2021-08-09
Single-sequence protein structure prediction using language models from deep learning
Chowdhury, R., Bouatta, N., Biswas, S., Rochereau, C., Church, G. M., Sorger, P. K., AlQuraishi, M. N.
10.1101/2021.08.02.454840 — Posted: 2021-08-04
A community-based approach to image analysis of cells, tissues and tumors
CSBC/PS-ON Image Analysis Working Group, , Vizcarra, J. C., Burlingame, E. A., Hug, C. B., Goltsev, Y., White, B. S., Tyson, D. R., Sokolov, A.
10.1101/2021.07.22.451363 — Posted: 2021-07-25
The gut bacterial natural product colibactin triggers induction of latent viruses in diverse bacteria
Silpe, J. E., Wong, J. W. H., Owen, S. V., Baym, M., Balskus, E. P.
10.1101/2021.05.24.445430 — Posted: 2021-05-25
Temporal and spatial topography of cell proliferation in cancer
Gaglia, G., Kabraji, S., Argyropoulou, D., Dai, Y., Wang, S., Bergholz, J., Coy, S., Lin, J.-R., Jeselsohn, R., Metzger, O., Winer, E. P., Dillon, D. A., Zhao, J. J., Sorger, P. K., Santagata, S.
10.1101/2021.05.16.443704 — Posted: 2021-05-17
Cancer patient survival can be accurately parameterized, revealing time-dependent therapeutic effects and doubling the precision of small trials
Plana, D., Fell, G., Alexander, B. M., Palmer, A. C., Sorger, P. K.
10.1101/2021.05.14.442837 — Posted: 2021-05-17
Recombination and lineage-specific mutations linked to the emergence of SARS-CoV-2
Patino-Galindo, J. A., Filip, I., Chowdhury, R., Maranas, C. D., Sorger, P. K., AlQuraishi, M., Rabadan, R.
10.1101/2020.02.10.942748 — Posted: 2021-04-06

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