Channel:  Harvard Program in Therapeutic Sciences

119 Articles

Matrix and analysis metadata standards (MAMS) to facilitate harmonization and reproducibility of single-cell data
Wang, Y., Sarfraz, I., Teh, W. K., Sokolov, A., Herb, B. R., Creasy, H. H., Virshup, I., Dries, R., Degatano, K., Mahurkar, A., Schnell, D. J., Madrigal, P., Hilton, J., Gehlenborg, N., Tickle, T., Campbell, J. D.
10.1101/2023.03.06.531314 — Posted: 2023-03-07
Parallel evolution of mutational fitness effects over 50,000 generations
Limdi, A., Owen, S. V., Herren, C., Lenski, R. E., Baym, M.
10.1101/2022.05.17.492023 — Posted: 2023-03-07
Multi-modal digital pathology for colorectal cancer diagnosis by high-plex immunofluorescence imaging and traditional histology of the same tissue section
Lin, J.-R., Chen, Y.-A., Campton, D., Cooper, J., Coy, S., Yapp, C., Tefft, J., McCarty, E., Ligon, K., Rodig, S. J., Reese, S., George, T., Santagata, S., Sorger, P. K.
10.1101/2022.09.28.509927 — Posted: 2023-02-21
Nociceptor neuroimmune interactomes reveal cell type- and injury-specific inflammatory pain pathways
Jain, A., Gyori, B., Hakim, S., Bunga, S., Taub, D. G., Ruiz-Cantero, M. C., Tong-Li, C., Andrews, N., Sorger, P. K., Woolf, C. J.
10.1101/2023.02.01.526526 — Posted: 2023-02-03
A CRISPRi/a screening platform to study cellular nutrient transport in diverse microenvironments
Chidley, C., Darnell, A. M., Gaudio, B. L., Lien, E. C., Barbeau, A. M., Vander Heiden, M. G., Sorger, P. K.
10.1101/2023.01.26.525375 — Posted: 2023-01-26
3D multiplexed tissue imaging reconstruction and optimized region-of-interest (ROI) selection through deep learning model of channels embedding
Burlingame, E., Ternes, L., Lin, J.-R., Chen, Y.-A., Kim, E. N., Gray, J. W., Santagata, S., Sorger, P. K., Chang, Y. H.
10.1101/2022.12.09.519807 — Posted: 2022-12-12
A Web-based Software Resource for Interactive Analysis of Multiplex Tissue Imaging Datasets
Creason, A. L., Watson, C., Gu, Q., Persson, D., Sargent, L. L., Chen, Y.-A., Lin, J.-R., Sivagnanam, S., Wünnemann, F., Nirmal, A. J., Chin, K., Feiler, H. S., Coussens, L. M., Schapiro, D., Grüning, B. A., Sorger, P. K., Sokolov, A., Goecks, J.
10.1101/2022.08.18.504436 — Posted: 2022-12-03
Prediction and Curation of Missing Biomedical Identifier Mappings with Biomappings
Hoyt, C. T., Hoyt, A. L., Gyori, B. M.
10.1101/2022.11.29.518386 — Posted: 2022-12-02
Assembling a corpus of phosphoproteomic annotations using ProtMapper to normalize site information from databases and text mining
Bachman, J. A., Sorger, P. K., Gyori, B. M.
10.1101/822668 — Posted: 2022-10-29
NDEx IQuery: a multi-method network gene set analysis leveraging the Network Data Exchange
Pillich, R. T., Chen, J., Churas, C., Fong, D., Gyori, B. M., Ideker, T., Karis, K., Liu, S. N., Ono, K., Pico, A., Pratt, D.
10.1101/2022.10.24.513552 — Posted: 2022-10-25

RSS  Channel RSS