Channel:  4D Nucleome

473 Articles

Piscis: a novel loss estimator of the F1 score enables accurate spot detection in fluorescence microscopy images via deep learning
Niu, Z., O'Farrell, A., Li, J., Reffsin, S., Jain, N., Dardani, I., Goyal, Y., Raj, A.
10.1101/2024.01.31.578123 — Posted: 2025-01-15
DANGO: Predicting higher-order genetic interactions
Zhang, R., Bafna, M., Ma, J., Ma, J.
10.1101/2020.11.26.400739 — Posted: 2025-01-13
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor
Grant, Z. L., Kuang, S., Zhang, S., Horrillo, A. J., Rao, K. S., Kameswaran, V., Joubran, C., Lau, P. K., Dong, K., Yang, B., Bartosik, W. M., Zemke, N. R., Ren, B., Kathiriya, I. S., Pollard, K. S., Bruneau, B. G.
10.1101/2025.01.09.632202 — Posted: 2025-01-12
Distinct Control of histone H1 expression within the Histone Locus body by CRAMP1
Bodner, J., Vadlamani, P., Helmin, K. A., Liu, Q., Mendillo, M. L., Singer, B. D., Srivastava, S., Foltz, D. R.
10.1101/2025.01.07.631602 — Posted: 2025-01-08
In vivo measurements of receptor tyrosine kinase activity reveal feedback regulation of a developmental gradient
Ho, E. K., Kim-Yip, R. P., Simpkins, A. G., Farahani, P. E., Oatman, H. R., Posfai, E., Shvartsman, S. Y., Toettcher, J. E.
10.1101/2025.01.06.631605 — Posted: 2025-01-07
Discovery of NANOG enhancers and their essential roles in self-renewal and differentiation in human embryonic stem cells
Yan, J., Luo, R., Rosen, B. P., Liu, D., Wong, W., Leslie, C. S., Huangfu, D.
10.1101/2024.12.21.628413 — Posted: 2024-12-21
De novo structural variants in autism spectrum disorder disrupt distal regulatory interactions of neuronal genes
Gjoni, K., Ren, X., Everitt, A., Shen, Y., Pollard, K. S.
10.1101/2024.11.06.621353 — Posted: 2024-11-07
An integrated view of the structure and function of the human 4D nucleome
The 4D Nucleome Consortium, , Dekker, J., Oksuz, B. A., Zhang, Y., Wang, Y., Minsk, M. K., Kuang, S., Yang, L., Gibcus, J. H., Krietenstein, N., Rando, O., Xu, J., Janssens, D. H., Henikoff, S., Kukalev, A., Willemin, A., Winick-Ng, W., Kempfer, R., Pombo, A., Yu, M., Kumar, P., Zhang, L., Belmont, A. S., Sasaki, T., van Schaik, T., Brueckner, L., Peric-Hupkes, D., van Steensel, B., Wang, P., Chai, H., Kim, M., Ruan, Y., Zhang, R., Quinodoz, S. A., Bhat, P., Guttman, M., Zhao, W., Chien, S., Liu, Y., Venev, S. V., Plewczynski, D., Irastorza Azcarate, I., Szabo, D., Thieme, C. J., Szczepinska
10.1101/2024.09.17.613111 — Posted: 2024-10-27
Heterogeneity in chromatin structure drives core regulatory pathways in B-cell Acute Lymphoblastic Leukemia
Sen, A., Xu, Z., Tyndale, S., Yasis, J., Cho, C. Y., Bump, R., Chandran, S., Luo, L., Fu, Y., Petersen, L. K., Shokhirev, M., Kuo, D. J., McVicker, G. P., Dixon, J. R.
10.1101/2024.10.04.616668 — Posted: 2024-10-05
The challenge of chromatin model comparison and validation a project from the first international 4D Nucleome Hackathon
Kubica, J., Korsak, S., Clerkin, A. B., Kouril, D., Schirman, D., Yadavalli, A. D., Banecki, K., Kadlof, M., Busby, B., Plewczynski, D.
10.1101/2024.10.02.616241 — Posted: 2024-10-03

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