Channel:  ENCODE

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

136 Articles

Prioritizing transcriptomic and epigenomic experiments by using an optimization strategy that leverages imputed data
Schreiber, J., Bilmes, J., Noble, W. S.
10.1101/708107 — Posted: 2019-07-19
LDpred-funct: incorporating functional priors improves polygenic prediction accuracy in UK Biobank and 23andMe data sets
Marquez-Luna, C., Gazal, S., Loh, P.-R., Kim, S. S., Furlotte, N., Auton, A., 23andMe Research Team, , Price, A. L.
10.1101/375337 — Posted: 2020-05-13
A curated benchmark of enhancer-gene interactions for evaluating enhancer-target gene prediction methods
Moore, J. E., Pratt, H., Purcaro, M., Weng, Z.
10.1101/745844 — Posted: 2019-08-24
Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Van Nostrand, E. L., Pratt, G. A., Yee, B. A., Wheeler, E. C., Blue, S. M., Mueller, J., Park, S. S., Garcia, K. E., Gelboin-Burkhart, C., Nguyen, T. B., Rabano, I., Stanton, R., Sundararaman, B., Wang, R., Fu, X.-D., Graveley, B. R., Yeo, G. W.
10.1101/807008 — Posted: 2019-10-18
Integrative analysis of 10,000 epigenomic maps across 800 samples for regulatory genomics and disease dissection
Adsera, C. B., Park, Y., Meuleman, W., Kellis, M.
10.1101/810291 — Posted: 2019-10-19
Population-specific causal disease effect sizes in functionally important regions impacted by selection
Shi, H., Gazal, S., Kanai, M., Koch, E. M., Schoech, A. P., Siewert, K. M., Kim, S. S., Luo, Y., Amariuta, T., Huang, H., Okada, Y., Raychaudhuri, S., Sunyaev, S. R., Price, A. L.
10.1101/803452 — Posted: 2020-09-04
A genome-wide almanac of co-essential modules assigns function to uncharacterized genes
Wainberg, M., Kamber, R. A., Balsubramani, A., Meyers, R. M., Sinnott-Armstrong, N., Hornburg, D., Jiang, L., Chan, J., Jian, R., Gu, M., Shcherbina, A., Dubreuil, M. M., Spees, K., Snyder, M. P., Kundaje, A., Bassik, M. C.
10.1101/827071 — Posted: 2019-11-03
Transcription imparts architecture, function, and logic to enhancer units
Tippens, N. D., Liang, J., Leung, K. Y., Ozer, A., Booth, J. G., Lis, J., Yu, H.
10.1101/818849 — Posted: 2019-11-07
Index and biological spectrum of accessible DNA elements in the human genome
Meuleman, W., Muratov, A., Rynes, E., Halow, J., Lee, K., Bates, D., Diegel, M., Dunn, D., Neri, J., Teodosiadis, A., Reynolds, A., Haugen, E., Nelson, J. S., Johnson, A., Frerker, M., Buckley, M., Sandstrom, R., Vierstra, J., Kaul, R., Stamatoyannopoulos, J. A.
10.1101/822510 — Posted: 2019-11-15
Quantifying genetic effects on disease mediated by assayed gene expression levels
Yao, D. W., O'Connor, L. J., Price, A. L., Gusev, A.
10.1101/730549 — Posted: 2020-01-03

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