Channel:  4D Nucleome

474 Articles

Mapping local and global liquid-liquid phase behavior in living cells using light-activated multivalent seeds
Bracha, D., Walls, M. T., Wei, M.-T., Zhu, L., Kurian, M., Toettcher, J. E., Brangwynne, C. P.
10.1101/283655 — Posted: 2018-03-16
Continuous-trait probabilistic model for comparing multi-species functional genomic data
Yang, Y., Gu, Q., Zhang, Y., Sasaki, T., Crivello, J., O'Neill, R. J., Gilbert, D. M., Ma, J.
10.1101/283093 — Posted: 2018-03-16
GIVE: toward portable genome browsers for personal websites
Cao, X., Yan, Z., Wu, Q., Zheng, A., Zhong, S.
10.1101/177832 — Posted: 2018-03-15
SAVER: Gene expression recovery for UMI-based single cell RNA sequencing
Huang, M., Wang, J., Torre, E., Dueck, H., Shaffer, S., Bonasio, R., Murray, J., Raj, A., Li, M., Zhang, N. R.
10.1101/138677 — Posted: 2018-03-08
Transcriptional burst initiation and polymerase pause release are key control points of transcriptional regulation
Bartman, C. R., Keller, C. A., Giardine, B., Hardison, R. C., Blobel, G. A., Raj, A.
10.1101/275354 — Posted: 2018-03-02
ChromoTrace: Reconstruction of 3D Chromosome Configurations by Super-Resolution Microscopy
Barton, C., Morganella, S., Oedegaard, O., Alexander, S., Ries, J., Fitzgerald, T., Ellenberg, J., Birney, E.
10.1101/115436 — Posted: 2018-02-22
Emerging Evidence of Chromosome Folding by Loop Extrusion
Fudenberg, G., Abdennur, N., Imakaev, M., Goloborodko, A., Mirny, L.
10.1101/264648 — Posted: 2018-02-16
Measuring the reproducibility and quality of Hi-C data
Yardımcı, G. G., Ozadam, H., Sauria, M. E. G., Ursu, O., Yan, K.-K., Yang, T., Chakraborty, A., Kaul, A., Lajoie, B. R., Song, F., Zhan, Y., Ay, F., Gerstein, M., Kundaje, A., Li, Q., Taylor, J., Yue, F., Dekker, J., Noble, W. S.
10.1101/188755 — Posted: 2018-02-05
Predicting Enhancer-Promoter Interaction from Genomic Sequence with Deep Neural Networks
Singh, S., Yang, Y., Poczos, B., Ma, J.
10.1101/085241 — Posted: 2018-02-05
Defect-Facilitated Buckling in Supercoiled Double-Helix DNA
Brahmachari, S., Dittmore, A., Takagi, Y., Neuman, K. C., Marko, J. F.
10.1101/259689 — Posted: 2018-02-04

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