Channel:  4D Nucleome

483 Articles

An RNA-binding region regulates CTCF clustering and chromatin looping
Hansen, A. S., Hsieh, T.-H. S., Cattoglio, C., Pustova, I., Darzacq, X., Tjian, R.
10.1101/495432 — Posted: 2018-12-16
Guided nuclear exploration increases CTCF target search efficiency
Hansen, A. S., Amitai, A., Cattoglio, C., Tjian, R., Darzacq, X.
10.1101/495457 — Posted: 2018-12-13
Two Contrasting Classes of Nucleolus-Associated Domains in Mouse Fibroblast Heterochromatin
Vertii, A., Ou, J., Yu, J., Yan, A., Pages, H., Liu, H., Zhu, L. J., Kaufman, P. D.
10.1101/484568 — Posted: 2018-12-03
Identification of new transmembrane proteins concentrated at the nuclear envelope using organellar proteomics of mesenchymal cells
Cheng, L.-C., Baboo, S., Lindsay, C., Brusman, L. E., Martinez-Bartolome, S., Tapia, O., Zhang, X., Yates, J. R., Gerace, L.
10.1101/486415 — Posted: 2018-12-03
Limits of chromosome compaction by loop-extruding motors
Banigan, E. J., Mirny, L. A.
10.1101/476424 — Posted: 2018-11-21
Hi-C yields chromosome-length scaffolds for a legume genome, Trifolium subterraneum
Dudchenko, O., Pham, M., Lui, C., Batra, S. S., Hoeger, M., Nyquist, S. K., Durand, N. C., Shamim, M. S., Machol, I., Erskine, W., Aiden, E. L., Kaur, P.
10.1101/473553 — Posted: 2018-11-20
Genome-wide co-localization of RNA-DNA interactions and fusion RNA pairs
Yan, Z., Huang, N., Wu, W., Chen, W., Jiang, Y., Chen, J., Huang, X., Wen, X., Xu, J., Jin, Q., Zhang, K., Chen, Z., Chien, S., Zhong, S.
10.1101/472019 — Posted: 2018-11-20
Simultaneous profiling of DNA methylation and chromatin architecture in mixed populations and in single cells
Li, G., Liu, Y., Zhang, Y., Fang, R., Kellis, M., Ren, B.
10.1101/470963 — Posted: 2018-11-15
Promoter-intrinsic and local chromatin features determine gene repression in lamina-associated domains
Leemans, C., van der Zwalm, M., Brueckner, L., Comoglio, F., van Schaik, T., Pagie, L., van Arensbergen, J., van Steensel, B.
10.1101/464081 — Posted: 2018-11-06
Satb1 integrates DNA sequence, shape, motif density and torsional stress to differentially bind targets in nucleosome-dense regions.
GHOSH, R. P., SHI, Q., YANG, L., REDDICK, M. P., NIKITINA, T., ZHURKIN, V. B., FORDYCE, P., STASEVICH, T. J., CHANG, H. Y., GREENLEAF, W. J., LIPHARDT, J. T.
10.1101/450262 — Posted: 2018-10-26

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