Channel:  4D Nucleome

474 Articles

Interrogation of the Dynamic Properties of Higher-Order Heterochromatin Using CRISPR/dCas9
Gao, Y., Han, M., Shang, S., Wang, H., Qi, L. S.
10.1101/2021.06.06.447300 — Posted: 2021-06-07
Micro-Meta App: an interactive software tool to facilitate the collection of microscopy metadata based on community-driven specifications
Rigano, A., Ehmsen, S., Ozturk, S. U., Ryan, J., Balashov, A., Hammer, M., Kirli, K., Bellve, K., Boehm, U., Brown, C. M., Chambers, J. J., Coleman, R. A., Cosolo, A., Faklaris, O., Fogarty, K., Guilbert, T., Hamacher, A. B., Itano, M. S., Keeley, D. P., Kunis, S., Lacoste, J., Laude, A., Ma, W., Marcello, M., Montero-Llopis, P., Nelson, G., Nitschke, R., Pimentel, J. A., Weidtkamp-Peters, S., Park, P. J., Alver, B., Grunwald, D., Strambio-De-Castillia, C.
10.1101/2021.05.31.446382 — Posted: 2021-06-01
Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model
Hammer, M., Huisman, M., Rigano, A., Boehm, U., Chambers, J. J., Gaudreault, N., North, A. J., Pimentel, J. A., Sudar, D., Bajcsy, P., Brown, C. M., Corbett, A. D., Faklaris, O., Lacoste, J., Laude, A., Nelson, G., Nitschke, R., Farzam, F., Smith, C., Grunwald, D., Strambio-De-Castillia, C.
10.1101/2021.04.25.441198 — Posted: 2021-05-31
Cell-type specialization in the brain is encoded by specific long-range chromatin topologies
Winick-Ng, W., Kukalev, A., Harabula, I., Zea Redondo, L., Szabo, D., Meijer, M., Serebreni, L., Zhang, Y., Bianco, S., Chiariello, A. M., Irastorza Azcarate, I., Fiorillo, L., Musella, F., Thieme, C. J., Irani, E., Torlai Triglia, E., Kolodziejczyk, A. A., Abentung, A., Apostolova, G., Paul, E. J., Franke, V., Kempfer, R., Akalin, A., Teichmann, S. A., Dechant, G., Ungless, M. A., Nicodemi, M., Welch, L., Castelo-Branco, G., Pombo, A.
10.1101/2020.04.02.020990 — Posted: 2021-05-12
Integrated spatial genomics in tissues reveals invariant and cell type dependent nuclear architecture
Takei, Y., Zheng, S., Yun, J., Shah, S., Pierson, N., White, J., Schindler, S., Tischbirek, C., Yuan, G.-C., Cai, L.
10.1101/2021.04.26.441547 — Posted: 2021-04-27
Stripenn detects architectural stripes from chromatin conformation data using computer vision
Yoon, S., Vahedi, G.
10.1101/2021.04.16.440239 — Posted: 2021-04-18
3D super-resolution fluorescence microscopy maps the variable molecular architecture of the Nuclear Pore Complex
Jimenez Sabinina, V., Hossain, M. J., Heriche, J.-K., Hoess, P., Nijmeijer, B., Mosalaganti, S., Kueblbeck, M., Callegari, A., Szymborska, A., Beck, M., Ries, J., Ellenberg, J.
10.1101/2020.11.27.386599 — Posted: 2021-04-16
Quantification of durable CRISPR-based gene silencing activity
Nakamura, M., Ivec, A., Gao, Y., Qi, L. S.
10.1101/2021.03.31.436355 — Posted: 2021-03-31
Automated CUT&Tag profiling of chromatin heterogeneity in mixed-lineage leukemia
Janssens, D., Meers, M. P., Wu, S. J., Babaeva, E., Meshinchi, S., Sarthy, J. F., Ahmad, K., Henikoff, S.
10.1101/2020.10.06.328948 — Posted: 2021-03-10
Multiplex-GAM: genome-wide identification of chromatin contacts yields insights not captured by Hi-C
Beagrie, R. A., Thieme, C. J., Annunziatella, C., Baugher, C., Zhang, Y., Schueler, M., Chiariello, A. M., Bianco, S., Kukalev, A., Li, Y., Kempfer, R., Scialdone, A., Welch, L. A., Nicodemi, M., Pombo, A.
10.1101/2020.07.31.230284 — Posted: 2021-03-08

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