Channel:  4D Nucleome

474 Articles

Regional and clonal T cell dynamics at single cell resolution in immune checkpoint blockade
Pai, J. A., Chow, A., Sauter, J., Mattar, M., Rizvi, H., Woo, H. J., Shah, N., Uddin, F., Quintanal-Villalonga, A., Chan, J. M., Manoj, P., Allaj, V., Baine, M., Chaft, J. E., Plodkowski, A. J., Won, H., Wells, D., Donoghue, M. T. A., de Stanchina, E., Sen, T., Wolchok, J. D., Houck-Loomis, B., Merghoub, T., Rudin, C. M., Satpathy, A. T., Hellmann, M. D.
10.1101/2021.09.27.461389 — Posted: 2021-09-27
Pairs and Pairix: a file format and a tool for efficient storage and retrieval for Hi-C read pairs
Lee, S., Vitzthum, C., Alver, B. H., Park, P. J.
10.1101/2021.08.24.457552 — Posted: 2021-08-26
Biochemically distinct cohesin complexes mediate positioned loops between CTCF sites and dynamic loops within chromatin domains
Liu, Y., Dekker, J.
10.1101/2021.08.24.457555 — Posted: 2021-08-26
BCL6-dependent TCF-1+ progenitor cells maintain effector and helper CD4 T cell responses to persistent antigen
Xia, Y., Sandor, K., Pai, J. A., Daniel, B., Raju, S., Wu, R., Hsiung, S., Qi, Y., Yangdon, T., Okamoto, M., Schreiber, R. D., Murphy, K. M., Satpathy, A. T., Egawa, T.
10.1101/2021.08.06.455141 — Posted: 2021-08-09
Cell type determination for cardiac differentiation occurs soon after seeding of human induced pluripotent stem cells
Jiang, C. L., Goyal, Y., Jain, N., Wang, Q., Truitt, R. E., Cote, A. J., Emert, B., Mellis, I. A., Kiani, K., Yang, W., Jain, R., Raj, A.
10.1101/2021.08.08.455532 — Posted: 2021-08-08
Heterochromatin diversity modulates genome compartmentalization and loop extrusion barriers
Spracklin, G., Abdennur, N. A., Imakaev, M., Chowdhury, N., Pradhan, S., Mirny, L., Dekker, J.
10.1101/2021.08.05.455340 — Posted: 2021-08-06
ShinyArchR.UiO: User-friendly, integrative and open-source tool for visualisation of single-cell ATAC-seq data using ArchR
Sharma, A., Akshay, A., Rogne, M., Eskeland, R.
10.1101/2021.06.21.449316 — Posted: 2021-08-02
SARS-CoV-2 Restructures the Host Chromatin Architecture
Wang, R., Lee, J.-H., Xiong, F., Kim, J., Al Hasani, L., Yuan, X., Shivshankar, P., Krakowiak, J., Qi, C., Wang, Y., Eltzschig, H. K., Li, W.
10.1101/2021.07.20.453146 — Posted: 2021-07-21
Macrophage inflammatory and regenerative response periodicity is programmed by cell cycle and chromatin state
Daniel, B., Belk, J. A., Meier, S. L., Chen, A. Y., Sandor, K., Qi, Y., Kitano, H., Wheeler, J. R., Foster, D. S., Januszyk, M. S., Longaker, M. T., Chang, H. Y., Satpathy, A. T.
10.1101/2021.06.24.449850 — Posted: 2021-06-25
Systematic reconstruction of the cellular trajectories of mammalian embryogenesis
Qiu, C., Cao, J., Li, T., Srivatsan, S., Huang, X., Calderon, D., Noble, W. S., Disteche, C. M., Spielmann, M., Moens, C. B., Trapnell, C., Shendure, J.
10.1101/2021.06.08.447626 — Posted: 2021-06-09

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