Channel:  Human Pangenome Reference Consortium (HPRC)

166 Articles

Constructing founder sets under allelic and non-allelic homologous recombination
Bonnet, K., Marschall, T., Doerr, D.
10.1101/2022.05.27.493721 — Posted: 2022-08-01
Haplotype-aware pantranscriptome analyses using spliced pangenome graphs
Sibbesen, J. A., Eizenga, J. M., Novak, A. M., Siren, J., Chang, X., Garrison, E., Paten, B.
10.1101/2021.03.26.437240 — Posted: 2022-07-21
A Draft Human Pangenome Reference
Liao, W.-W., Asri, M., Ebler, J., Doerr, D., Haukness, M., Hickey, G., Lu, S., Lucas, J. K., Monlong, J., Abel, H. J., Buonaiuto, S., Chang, X. H., Cheng, H., Chu, J., Colonna, V., Eizenga, J. M., Feng, X., Fischer, C., Fulton, R. S., Garg, S., Groza, C., Guarracino, A., Harvey, W. T., Heumos, S., Howe, K., Jain, M., Lu, T.-Y., Markello, C., Martin, F. J., Mitchell, M. W., Munson, K. M., Mwaniki, M. N., Novak, A. M., Olsen, H. E., Pesout, T., Porubsky, D., Prins, P., Sibbesen, J. A., Tomlinson, C., Villani, F., Vollger, M. R., Human Pangenome Reference Consortium, , Bourque, G., Chaisson, M.
10.1101/2022.07.09.499321 — Posted: 2022-07-09
Increased mutation rate and interlocus gene conversion within human segmental duplications.
Vollger, M. R., DeWitt, W. S., Dishuck, P. C., Harvey, W. T., Guitart, X., Goldberg, M. E., Rozanski, A., Lucas, J., Asri, M., The Human Pangenome Reference Consortium, , Munson, K. M., Lewis, A. P., Hoekzema, K., Logsdon, G. A., Porubsky, D., Paten, B., Harris, K., Hsieh, P., Eichler, E. E.
10.1101/2022.07.06.498021 — Posted: 2022-07-07
Gaps and complex structurally variant loci in phased genome assemblies
Porubsky, D., Vollger, M. R., Harvey, W. T., Rozanski, A. N., Ebert, P., Hickey, G., Hasenfeld, P., Sanders, A. D., Stober, C., Human Pangenome Reference Consortium (HPRC), , Korbel, J. O., Paten, B., Marschall, T., Eichler, E. E.
10.1101/2022.07.06.498874 — Posted: 2022-07-06
ChromGene: Gene-Based Modeling of Epigenomic Data
Jaroszewicz, A., Ernst, J.
10.1101/2022.05.24.493345 — Posted: 2022-07-05
The dynseq genome browser track enables visualization of context-specific, dynamic DNA sequence features at single nucleotide resolution
Nair, S., Barrett, A., Li, D., Raney, B. J., Lee, B. T., Kerpedjiev, P., Ramalingam, V., Pampari, A., Lekschas, F., Wang, T., Haeussler, M., Kundaje, A.
10.1101/2022.05.26.493621 — Posted: 2022-05-31
A framework for summarizing chromatin state annotations within and identifying differential annotations across groups of samples
Vu, H. T., Koch, Z., Fiziev, P., Ernst, J.
10.1101/2022.05.08.491094 — Posted: 2022-05-08
Genome-wide CRISPR guide RNA design and specificity analysis with GuideScan2
Schmidt, H., Zhang, M., Mourelatos, H., Sanchez-Rivera, F. J., Lowe, S. W., Ventura, A., Leslie, C. S., Pritykin, Y.
10.1101/2022.05.02.490368 — Posted: 2022-05-03
AGC: Compact representation of assembled genomes
Deorowicz, S., Danek, A., Li, H.
10.1101/2022.04.07.487441 — Posted: 2022-04-07

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