Channel:  Human Pangenome Reference Consortium (HPRC)

166 Articles

A transient dermal niche and dual epidermal programs underlie sweat gland development
Dingwall, H. L., Tomizawa, R. R., Aharoni, A., Hu, P., Qiu, Q., Kokalari, B., Martinez, S. M., Donahue, J. C., Aldea, D., Mendoza, M., Glass, I. A., Birth Defects Research Laboratory, , Wu, H., Kamberov, Y. G.
10.1101/2023.04.15.537037 — Posted: 2023-04-17
Pangenome Graph Construction from Genome Alignment with Minigraph-Cactus
Hickey, G., Monlong, J., Ebler, J., Novak, A., Eizenga, J. M., Gao, Y., Human Pangenome Reference Consortium, , Marschall, T., Li, H., Paten, B.
10.1101/2022.10.06.511217 — Posted: 2023-04-12
Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation
Kolmogorov, M., Billingsley, K. J., Mastoras, M., Meredith, M., Monlong, J., Lorig-Roach, R., Asri, M., Alvarez Jerez, P., Malik, L., Dewan, R., Reed, X., Genner, R. M., Daida, K., Behera, S., Shafin, K., Pesout, T., Prabakaran, J., Carnevali, P., North American Brain Expression Consortium (NABEC), , Yang, J., Rhie, A., Scholz, S. W., Traynor, B. J., Miga, K. H., Jain, M., Timp, W., Phillippy, A. M., Chaisson, M., Sedlazeck, F. J., Blauwendraat, C., Paten, B.
10.1101/2023.01.12.523790 — Posted: 2023-04-05
Evolutionary constraint and innovation across hundreds of placental mammals
Christmas, M. J., Kaplow, I. M., Genereux, D. P., Dong, M. X., Hughes, G. M., Li, X., Sullivan, P. F., Hindle, A. G., Andrews, G., Armstrong, J. C., Bianchi, M., Breit, A. M., Diekhans, M., Fanter, C., Foley, N. M., Goodman, D. B., Goodman, L., Keough, K. C., Kirilenko, B., Kowalczyk, A., Lawless, C., Lind, A. L., Meadows, J. R. S., Moreira, L. R., Redlich, R. W., Ryan, L., Swofford, R., Valenzuela, A., Wagner, F., Wallerman, O., Brown, A. R., Damas, J., Fan, K., Gatesy, J., Grimshaw, J., Johnson, J., Kozyrev, S. V., Lawler, A. J., Marinescu, V. D., Morrill, K. M., Osmanski, A., Paulat, N. S.
10.1101/2023.03.09.531574 — Posted: 2023-03-09
Dynamic network-guided CRISPRi screen reveals CTCF loop-constrained nonlinear enhancer-gene regulatory activity in cell state transitions
Luo, R., Yan, J., Oh, J. W., Xi, W., Shigaki, D., Wong, W., Cho, H., Murphy, D., Cutler, R., Rosen, B. P., Pulecio, J., Yang, D., Glenn, R., Chen, T., Li, Q. V., Vierbuchen, T., Sidoli, S., Apostolou, E., Huangfu, D., Beer, M. A.
10.1101/2023.03.07.531569 — Posted: 2023-03-09
Structurally divergent and recurrently mutated regions of primate genomes
Mao, Y., Harvey, W. T., Porubsky, D., Munson, K. M., Hoekzema, K., Lewis, A. P., Audano, P. A., Rozanski, A., Yang, X., Zhang, S., Gordon, D. S., Wei, X., Logsdon, G. A., Haukness, M., Dishuck, P. C., Jeong, H., del Rosario, R., Bauer, V. L., Fattor, W. T., Wilkerson, G. K., Lu, Q., Paten, B., Feng, G., Sawyer, S. L., Warren, W. C., Carbone, L., Eichler, E. E.
10.1101/2023.03.07.531415 — Posted: 2023-03-07
The motif composition of variable-number tandem repeats impacts gene expression
Lu, T.-Y. T., Smaruj, P. N., Fudenberg, G., Mancuso, N., Chaisson, M.
10.1101/2022.03.17.484784 — Posted: 2023-03-05
Phased nanopore assembly with Shasta and modular graph phasing with GFAse
Lorig-Roach, R., Meredith, M., Monlong, J., Jain, M., Olsen, H., McNulty, B., Porubsky, D., Montague, T. G., Lucas, J., Condon, C., Eizenga, J., Juul, S., McKenzie, S., Simmonds, S., Park, J., Asri, M., Koren, S., Eichler, E., Axel, R., Martin, B., Carnevali, P., Miga, K., Paten, B.
10.1101/2023.02.21.529152 — Posted: 2023-02-22
Recombination between heterologous human acrocentric chromosomes
Guarracino, A., Buonaiuto, S., Gomes de Lima, L., Potapova, T., Rhie, A., Koren, S., Rubinstein, B., Fischer, C., Human Pangenome Reference Consortium, , Gerton, J. L., Phillippy, A. M., Colonna, V., Garrison, E.
10.1101/2022.08.15.504037 — Posted: 2023-01-18
Spatial transcriptomics reveals a conserved segment polarity program that governs muscle patterning in Nematostella vectensis
He, S., Shao, W., Chen, S., Wang, T., Gibson, M.
10.1101/2023.01.09.523347 — Posted: 2023-01-10

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