Channel:  Human Pangenome Reference Consortium (HPRC)

102 Articles

Transcript assembly improves expression quantification of transposable elements in single cell RNA-seq data
Shao, W., Wang, T.
10.1101/2020.07.31.231027 — Posted: 2020-07-31
Accurate chromosome-scale haplotype-resolved assembly of human genomes
Garg, S., Arkarachai Fungtammasan, A., Carroll, A., Chou, M., Schmitt, A., Zhou, X., Mac, S., Peluso, P., Hatas, E., Ghurye, J., Maguire, J., Mahmoud, M., Cheng, H., Heller, D., Zook, J. M., Moemke, T., Marschall, T., Sedlazeck, F. J., Aach, J., Chin, C.-S., Church, G. M., Li, H. M.
10.1101/810341 — Posted: 2020-07-01
Unique K-mer sequences for validating cancer-related substitution, insertion and deletion mutations
Lee, H., Shuaibi, A. A., Bell, J., Pavlichin, D. S., Ji, H.
10.1101/2020.06.20.163113 — Posted: 2020-06-20
Higher rates of processed pseudogene acquisition in humans and three great apes revealed by long read assemblies
Feng, X., Li, H.
10.1101/2020.06.07.139212 — Posted: 2020-06-08
The qBED track: a novel genome browser visualization for point processes
Moudgil, A., Li, D., Hsu, S., Purushotham, D., Wang, T., Mitra, R. D.
10.1101/2020.04.27.060061 — Posted: 2020-04-30
Succinct dynamic variation graphs
Eizenga, J. M., Novak, A. M., Kobayashi, E., Villani, F., Cisar, C., Heumos, S., Hickey, G., Colonna, V., Paten, B., Garrison, E.
10.1101/2020.04.23.056317 — Posted: 2020-04-25
HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads
Nurk, S., Walenz, B. P., Rhie, A., Vollger, M. R., Logsdon, G. A., Grothe, R., Miga, K. H., Eichler, E. E., Phillippy, A. M., Koren, S.
10.1101/2020.03.14.992248 — Posted: 2020-03-19
SDip: A novel graph-based approach to haplotype-aware assembly based structural variant calling in targeted segmental duplications sequencing
Heller, D., Vingron, M., Church, G., Li, H., Garg, S.
10.1101/2020.02.25.964445 — Posted: 2020-02-26
Exploring the coronavirus epidemic using the new WashU Virus Genome Browser
Flynn, J., Purushotham, D., Choudhary, M. N., Zhuo, X., Fan, C., Matt, G., Li, D., Wang, T.
10.1101/2020.02.07.939124 — Posted: 2020-02-11
Co-opted transposons help perpetuate conserved higher-order chromosomal structures
Choudhary, M. N., Friedman, R. Z., Wang, J. T., Jang, H. S., Zhuo, X., Wang, T.
10.1101/485342 — Posted: 2019-10-14

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