bioRxiv directory

Fernandes, H. M.; Cabral, J.; Van Hartevelt, T. J.; Lord, L.-D.; Gleesborg, C.; Moller, A.; Deco, G.; Whybrow, P. C.; Petrovic, P.; James, A. C.; Kringelbach, M. L.

10.1101/241091 — neuroscience — Posted on 2017-12-30

40 Association of BDNF Val66Met Polymorphism and Brain BDNF levels with Major Depression and Suicide

Youssef, M.; Underwood, M.; Huang, Y.-Y.; Hsiung, S.-c.; Liu, Y.; Simpson, N.; Bakalian, M.; Rosoklija, G.; Dwork, A. J.; Arango, V.; Mann, J. J.

10.1101/233304 — neuroscience — Posted on 2017-12-30

41 Analysis of ipsilateral corticocortical connectivity in the mouse brain

Watakabe, A.; Hirokawa, J.

10.1101/241125 — neuroscience — Posted on 2017-12-30

42 On a non-trivial application of Algebraic Topology to Molecular Biology

Braslavsky, I.; Stavans, J.

10.1101/240499 — molecular biology — Posted on 2017-12-30

43 The Functional False Discovery Rate with Applications to Genomics

Chen, X.; Robinson, D. G.; Storey, J. D.

10.1101/241133 — genomics — Posted on 2017-12-30

44 Pervasive and diverse collateral sensitivity profiles inform optimal strategies to limit antibiotic resistance

Maltas, J.; Wood, K.

10.1101/241075 — evolutionary biology — Posted on 2017-12-30

45 Hitchhiking in space: ancestry in adapting, spatially-extended populations

Allman, B.; Weissman, D. B.

10.1101/084426 — evolutionary biology — Posted on 2017-12-30

46 Factor analysis on the Tasmanian topsoil microscopic community

Kakar, A.; Kolezeva, Y.

10.1101/241240 — ecology — Posted on 2017-12-30

47 Single-cell RNA-Seq Resolves Cellular Heterogeneity and Transcriptional Dynamics during Spermatogonia Stem Cells Establishment and Differentiation

Liao, J.; Ng, S. H.; Tu, J.; Luk, A. C. S.; Qian, Y.; Tang, N. L. S.; Feng, B.; Chan, W.-Y.; Fouchet, P.; Lee, T.-L.

10.1101/194696 — developmental biology — Posted on 2017-12-30

48 Co-translational protein targeting facilitates centrosomal recruitment of PCNT during centrosome maturation

Sepulveda, G.; Antkowiak, M.; Brust-Mascher, I.; Mahe, K.; Ou, T.; Castro, N.; Christensen, L. N.; Cheung, L.; Yoon, D.; Huang, B.; Jao, L.-E.

10.1101/241083 — cell biology — Posted on 2017-12-30

49 MicroED Structures of HIV-1 Gag CTD-SP1 Reveal Binding Interactions with the Maturation Inhibitor Bevirimat

Purdy, M. D.; Shi, D.; Chrustowicz, J.; Hattne, J.; Gonen, T.; Yeager, M.

10.1101/241182 — biophysics — Posted on 2017-12-30

50 PEA: an integrated R toolkit for plant epitranscriptome analysis

Zhai, J.; Song, J.; Cheng, Q.; Tang, Y.; Ma, C.

10.1101/240887 — bioinformatics — Posted on 2017-12-30

51 TCIApathfinder: an R client for The Cancer Imaging Archive REST API

Russell, P.; Fountain, K.; Wolverton, D.; Ghosh, D.

10.1101/240986 — bioinformatics — Posted on 2017-12-30

52 Multi-modal meta-analysis of 1494 hepatocellular carcinoma samples reveals vast impacts of consensus driver genes on phenotypes

Chaudhary, K.; Lu, L.; Poirion, O. B.; Huang, S.; Ching, T.; Garmire, L. X.

10.1101/166090 — bioinformatics — Posted on 2017-12-30

53 MAGpy: a reproducible pipeline for the downstream analysis of metagenome-assembled genomes (MAGs)

Stewart, R.; Auffret, M.; Snelling, T.; Roehe, R.; Watson, M.

10.1101/233544 — bioinformatics — Posted on 2017-12-30

54 Changes in levels of major yolk protein in the coelomic fluid and gonad during the reproductive cycle in wild sea urchins, Mesocentrotus nudus

Ura, K.; Takei, N.; Higuchi, I.; Yuhi, T.; Nishimiya, O.; Takagi, Y.

10.1101/241059 — physiology — Posted on 2017-12-29

55 3.7 A cryo-EM structure of the core Centromere Binding Factor 3 complex

Zhang, W.; Lukoynova, N.; Miah, S.; Vaughan, C. K.

10.1101/241067 — molecular biology — Posted on 2017-12-29

56 MYC-driven epigenetic reprogramming favors the onset of tumorigensis by inducing a stem cell-like state

Poli, V.; Fagnocchi, L.; Fasciani, A.; Cherubini, A.; Mazzoleni, S.; Ferrillo, S.; Miluzio, A.; Gaudioso, G.; Vaira, V.; Turdo, A.; Giaggianesi, M.; Chinnici, A.; Lipari, E.; Bicciato, S.; Bosari, S.; Todaro, M.; Zippo, A.

10.1101/241042 — cancer biology — Posted on 2017-12-29

57 Visualization of class A GPCR oligomerization by image-based fluorescence fluctuation spectroscopy

Isbilir, A.; Moeller, J.; Bock, A.; Zabel, U.; Annibale, P.; Lohse, M. J.

10.1101/240903 — biophysics — Posted on 2017-12-29

58 Is a large eye size a risk factor for myopia? A Mendelian randomization study

Plotnikov, D.; Guggenheim, J.; The UK Biobank Eye and Vision Consortium,

10.1101/240283 — epidemiology — Posted on 2017-12-29

59 Circuit and cellular mechanisms facilitate the transformation from dense to sparse coding in the insect olfactory system

Betkiewicz, R. L.; Nawrot, M. P.; Lindner, B.

10.1101/240671 — neuroscience — Posted on 2017-12-29

60 Three-photon fluorescence microscopy with an axially elongated Bessel focus

Rodriguez, C.; Liang, Y.; Lu, R.; Ji, N.

10.1101/240960 — neuroscience — Posted on 2017-12-29

61 Calcium channel levels at single synapses predict release probability and are upregulated in homeostatic potentiation

Gratz, S. J.; Bruckner, J. J.; Hernandez, R. X.; Khateeb, K.; Macleod, G.; O'Connor-Giles, K. M.

10.1101/240051 — neuroscience — Posted on 2017-12-29

62 Bacterial Community Shift in Marine Tar Balls following Low Salinity Exposure

Tran, M. H.; Park, J.-W.

10.1101/241034 — ecology — Posted on 2017-12-29

63 Precautionary Coherence Unravels Dose Escalation Designs

Norris, D. C.

10.1101/240846 — pharmacology and toxicology — Posted on 2017-12-29

64 Murine polyomavirus microRNAs promote viuria during the acute phase of infection

Burke, J. M.; Bass, C. R.; Ulug, E. T.; Sullivan, C. S.

10.1101/240994 — microbiology — Posted on 2017-12-29

65 IMPROVEMENTS TO BAYESIAN GENE ACTIVITY STATE ESTIMATION FROM GENOME-WIDE TRANSCRIPTOMICS DATA

Disselkoen, C.; Hekman, N.; Gilbert, B.; Benson, S.; Anderson, M.; DeJongh, M.; Best, A.; Tintle, N.

10.1101/241000 — genomics — Posted on 2017-12-29

66 Can net diversification rates account for spatial patterns of species richness?

Sanin, C.; Jimenez, I.; Fjeldsa, J.; Rahbek, C.; Cadena, D.

10.1101/240978 — evolutionary biology — Posted on 2017-12-29

67 “CapZyme-Seq” comprehensively defines promoter-sequence determinants for RNA 5’ capping with NAD+

Vvedenskaya, I. O.; Bird, J. G.; Zhang, Y.; Zhang, Y.; Jiao, X.; Barvik, I.; Krasny, L.; Kiledjian, M.; Taylor, D. M.; Ebright, R. H.; Nickels, B. E.

10.1101/239426 — biochemistry — Posted on 2017-12-29

68 Computational docking reveals evolutionary conservation of a specific interaction between 15d-Prostaglandin-J2 and eIF4A.

Yun, S. J.; Kim, H.; Lee, S. G.; Jung, S.-H.; Kim, J. H.; Ryu, J. E.; Singh, N. J.; Jeon, J.; Han, J.-K.; Kim, C.-H.; Kim, S.; Kim, K. S.; Jang, S. K.; Kim, W. J.

10.1101/237610 — molecular biology — Posted on 2017-12-29

69 The Transcriptional Program of Regeneration in the Giant Single Cell, Stentor coeruleus

Sood, P.; McGillivary, R.; Marshall, W. F.

10.1101/240788 — cell biology — Posted on 2017-12-29

70 Redesigning chromosomes for optimized Hi-C assay provides insights on loop formation and homologs pairing during meiosis

Muller, H.; Scolari, V.; Mercy, G.; Lazar-Stefanita, L.; Piazza, A.; Agier, N.; Descorps-Declere, S.; Espeli, O.; Llorente, B.; Fischer, G.; Mozziconacci, J.; Koszul, R.

10.1101/169847 — synthetic biology — Posted on 2017-12-29

71 Improved Aedes aegypti mosquito reference genome assembly enables biological discovery and vector control

Matthews, B. J.; Dudchenko, O.; Kingan, S.; Koren, S.; Antoshechkin, I.; Crawford, J. E.; Glassford, W. J.; Herre, M.; Redmond, S. N.; Rose, N. H.; Weedall, G. D.; Wu, Y.; Batra, S. S.; Brito-Sierra, C. A.; Buckingham, S. D.; Campbell, C. L.; Chan, S.; Cox, E.; Evans, B. R.; Fansiri, T.; Filipovic, I.; Fontaine, A.; Gloria-Soria, A.; Hall, R.; Joardar, V. S.; Jones, A. K.; Kay, R. G. G.; Kodali, V.; Lee, J.; Lycett, G. J.; Mitchell, S. N.; Muehling, J.; Murphy, M. R.; Omer, A.; Partridge, F. A.; Peluso, P.; Aiden, A. P.; Ramasamy, V.; Rasic, G.; Roy, S.; Saavedra-Rodriguez, K.; Sharan, S.; Sha

10.1101/240747 — genomics — Posted on 2017-12-29

72 NGSphy: phylogenomic simulation of next-generation sequencing data

Escalona, M.; Rocha, S.; Posada, D.

10.1101/197715 — bioinformatics — Posted on 2017-12-29

73 Discovering lncRNA Mediated Sponge Interactions in Breast Cancer Molecular Subtypes

Olgun, G.; Sahin, O.; Tastan, O.

10.1101/209015 — bioinformatics — Posted on 2017-12-29

74 No compelling evidence that preferences for facial masculinity track changes in women’s hormonal status

Jones, B. C.; Hahn, A. C.; Fisher, C. I.; Wang, H.; Kandrik, M.; Han, C.; Fasolt, V.; Morrison, D.; Holzleitner, I. J.; O'Shea, K. J.; Roberts, C.; Little, A. C.; DeBruine, L. M.

10.1101/136549 — animal behavior and cognition — Posted on 2017-12-29

75 Membrane potential correlates of network decorrelation and improved SNR by cholinergic activation in the somatosensory cortex.

Meir, I.; Katz, Y.; Lampl, I.

10.1101/240853 — neuroscience — Posted on 2017-12-29

76 Satiation State-dependent Dopaminergic Control of Food Seeking in Drosophila

Landayan, D.; Feldman, D. S.; Wolf, F. W.

10.1101/240697 — neuroscience — Posted on 2017-12-29

77 A nonparametric estimator of population structure unifying admixture models and principal components analysis

Cabreros, I.; Storey, J. D.

10.1101/240812 — genomics — Posted on 2017-12-29

78 Proposal for practical multi-kingdom classification of eukaryotes based on monophyly and comparable divergence time criteria

Tedersoo, L.

10.1101/240929 — evolutionary biology — Posted on 2017-12-29

79 Deep learning reveals many more inter-protein residue-residue contacts than direct coupling analysis

Zhou, T.; Wang, S.; Xu, J.

10.1101/240754 — bioinformatics — Posted on 2017-12-29

80 A Simulation Analysis and Screening of Deleterious Non-Synonymous Single NucleotidePolymorphisms (SNPs) in Human CDKN1A Gene

Prince, G. M. S. H.; Dhar, T.

10.1101/240820 — bioinformatics — Posted on 2017-12-29

81 High- to low-level decoding does not generally improve perceptual performance

Luu, L.; Qiu, C.; Stocker, A.

10.1101/240390 — animal behavior and cognition — Posted on 2017-12-29

82 Bias toward long gene misregulation in synaptic disorders can be an artefact of amplification-based methods

Raman, A. T.; Pohodich, A. E.; Wan, Y.-W.; Yalamanchili, H. K.; Lowry, B.; Zoghbi, H. Y.; Liu, Z.

10.1101/240705 — neuroscience — Posted on 2017-12-29

83 Differential effects of learned associations with words and pseudowords on event-related brain potentials

Kulke, L.; Bayer, M.; Grimm, A.-M.; Schacht, A.

10.1101/240945 — neuroscience — Posted on 2017-12-29

84 Localized Recombination Drives Diversification of Killing Spectra for Phage Derived Syringacins

Baltrus, D.; Clark, M.; Smith, C.; Hockett, K.

10.1101/240762 — microbiology — Posted on 2017-12-29

85 Candidatus Nitrosocaldus cavascurensis, an ammonia oxidizing, extremely thermophilic archaeon with a highly mobile genome

Abby, S. S.; Melcher, M.; Kerou, M.; Krupovic, M.; Stieglmeier, M.; Rossel, C.; Pfeifer, K.; Schleper, C.

10.1101/240879 — microbiology — Posted on 2017-12-29

86 Extending Tests of Hardy-Weinberg Equilibrium to Structured Populations

Hao, W.; Storey, J. D.

10.1101/240804 — genomics — Posted on 2017-12-29

87 Dot2dot: Accurate Whole-Genome Tandem Repeats Discovery

Genovese, L. M.; Mosca, M. M.; Pellegrini, M.; Geraci, F.

10.1101/240937 — genomics — Posted on 2017-12-29

88 A genome-wide association study for shared risk across major psychiatric disorders in a nation-wide birth cohort implicates fetal neurodevelopment as a key mediator

Schork, A. J.; Won, H.; Appadurai, V.; Nudel, R.; Gandal, M.; Delaneau, O.; Hougaard, D.; Baekved-Hansen, M.; Bybjerg-Grauholm, J.; Pedersen, M. G.; Pedersen, C. B.; Neale, B. M.; Daly, M. J.; Nordentoft, M.; Mors, O.; Boerglum, A. D.; Mortensen, P. B.; Buil, A.; Thompson, W. K.; Geschwind, D.; Werge, T.

10.1101/240911 — genetics — Posted on 2017-12-29

89 Crosstalk between one carbon metabolism and eph signaling promotes neural stem cells differentiation through epigenetic remodeling

Fawal, M.-A.; Jungas, T.; Kischel, A.; Audouard, C.; Iacovoni, J. S.; Davy, A.

10.1101/240895 — developmental biology — Posted on 2017-12-29

90 Sensory and decisional components of endogenous attention are dissociable.

Banerjee, S.; Grover, S.; Ganesh, S.; Sridharan, D.

10.1101/231613 — neuroscience — Posted on 2017-12-29

91 The interaction landscape between transcription factors and the nucleosome

Zhu, F.; Farnung, L.; Kaasinen, E.; Sahu, B.; Yin, Y.; Wei, B.; Dodonova, S.; Cramer, P.; Taipale, J.

10.1101/240598 — systems biology — Posted on 2017-12-29

92 Sexual dimorphism of complement-dependent microglial synaptic pruning and other immune pathways in the developing brain

Prilutsky, D.; Kho, A. T.; Feiglin, A.; Hammond, T.; Stevens, B.; Kohane, I. S.

10.1101/204412 — neuroscience — Posted on 2017-12-29

93 Reconstruction of atomistic structures from coarse-grained models for protein-DNA complexes

Shimizu, M.; Takada, S.

10.1101/205062 — biophysics — Posted on 2017-12-29

94 The network structure of cancer ecosystems

Castillo, S. P. P.; Rebolledo, R.; Arim, M.; Hochberg, M. E.; Marquet, P. A.

10.1101/240796 — ecology — Posted on 2017-12-29

95 Geographical co-occurrence of butterfly species: The importance of niche filtering by host plant species

Nakadai, R.; Hashimoto, K.; Iwasaki, T.; Sato, Y.

10.1101/132530 — ecology — Posted on 2017-12-29

96 mTORC1 controls phase-separation and the biophysical properties of the cytoplasm by tuning crowding

Delarue, M.; Brittingham, G. P.; Pfeffer, S.; Surovtsev, I.; Kennedy, K. J.; Pinglay, S.; Gutierrez, J. I.; Schaffer, M.; Chung, J. K.; Plitzko, J.; Groves, J. T.; Jacobs-Wagner, C.; Engel, B. D.; Holt, L. J.

10.1101/073866 — cell biology — Posted on 2017-12-29

97 Scalable volumetric imaging for ultrahigh-speed brain mapping at synaptic resolution

Wang, H.; Zhu, Q.; Ding, L.; Shen, Y.; Yang, C.-Y.; Xu, F.; Shu, C.; Guo, Y.; Xiong, Z.; Shan, Q.; Jia, F.; Su, P.; Yang, Q.-R.; Li, B.; He, X.; Chen, X.; Wu, F.; Zhou, J.-N.; Xu, F.; Han, H.; Lau, P.-M.; Bi, G.-Q.

10.1101/240770 — neuroscience — Posted on 2017-12-29

98 The Transcriptional Program of Regeneration in the Giant Single Cell, Stentor coeruleus

Sood, P.; McGillivary, R.; Marshall, W. F.

10.1101/240788 — cell biology — Posted on 2017-12-29

99 Cell cycle repression and DNA repair defects follow constricted migration

Pfeifer, C. R.; Xia, Y.; Zhu, K.; Liu, D.; Irianto, J.; Harding, S. M.; Greenberg, R. A.; Discher, D. E.

10.1101/240838 — biophysics — Posted on 2017-12-29

100 A genetically encoded adhesin toolbox for programming multicellular morphologies and patterns

Glass, D. S.; Riedel-Kruse, I. H.

10.1101/240721 — synthetic biology — Posted on 2017-12-28

101 The Mediator co-activator complex regulates Ty1 retromobility by controlling the balance between Ty1i and Ty1 promoters

Salinero, A. C.; Knoll, E. R.; Zhu, Z. I.; Landsman, D.; Curcio, M. J.; Morse, R. H.

10.1101/176248 — molecular biology — Posted on 2017-12-28

102 Scaling of G1 duration with population doubling time by a cyclin in Saccharomyces cerevisiae

Blank, H. M.; Callahan, M.; Pistikopoulos, I. P. E.; Polymenis, A. O.; Polymenis, M.

10.1101/240713 — cell biology — Posted on 2017-12-28

103 The Tandem Duplicator Phenotype is a prevalent genome-wide cancer configuration driven by distinct gene mutations

Menghi, F.; Barthel, F. P.; Yadav, V.; Tang, M.; Ji, B.; Tang, Z.; Carter, G. W.; Ruan, Y.; Scully, R.; Verhaak, R. G.; Jonkers, J.; Liu, E. T.

10.1101/240648 — genomics — Posted on 2017-12-28

104 In Vitro Study Of Dentin Hypersensitivity Treated By Whitlockite Glass-Ceramics

Juraski, A. d. C.; Ribeiro, D.; da Ana, P.; Daguano, J.

10.1101/226068 — bioengineering — Posted on 2017-12-28

105 Transgenerational cues about local mate competition affect offspring sex ratios in the spider mite Tetranychus urticae

Duncan, A.; Marinosci, C.; Devaux, C.; Lefevre, S.; Magalhaes, S.; Griffin, J.; Valente, A.; Ronce, O.; Olivieri, I.

10.1101/240127 — evolutionary biology — Posted on 2017-12-28

106 Multiple Determinants and Consequences of Cohesion Fatigue in Mammalian Cells

Sapkota, H.; Wasiak, E.; Gorbsky, G. J.

10.1101/240630 — cell biology — Posted on 2017-12-28

107 Development of High-Order Organization of Guanine-Based Reflectors Underlies the Dual Functionality of the Zebrafish Iris

Gur, D.; Nicolas, J.-D.; Brumfeld, V.; Bar-Elli, O.; Oron, D.; Levkowitz, G.

10.1101/240028 — biophysics — Posted on 2017-12-28

108 Patterns in protein flexibility: a comparison of NMR "ensembles", MD trajectories and crystallographic B-factors

Riga, A.; Rivera, J.; Snyder, D.

10.1101/240655 — biophysics — Posted on 2017-12-28

109 ProteomeVis: a web app for exploration of protein properties from structure to sequence evolution across organisms’ proteomes

Gilson, A.; Durfee, N.; Razban, R.; Strobelt, H.; Dinkla, K.; Choi, J.-M.; Pfister, H.; Shakhnovich, E.

10.1101/227827 — evolutionary biology — Posted on 2017-12-28

110 Whole Genomes Define Concordance of Matched Primary, Xenograft, and Organoid Models of Pancreas Cancer

Gendoo, D. M. A.; Denroche, R. E.; Zhang, A.; Radulovich, N.; Jang, G. H.; Lemire, M.; Fischer, S.; Chadwick, D.; Lungu, I. M.; Ibrahimov, E.; Cao, P.-J.; Stein, L. D.; Wilson, J. M.; Bartlett, J. M. S.; Tsao, M.-S.; Dhani, N.; Hedley, D.; Gallinger, S.; Haibe-Kains, B.

10.1101/209692 — bioinformatics — Posted on 2017-12-28

111 Automated evaluation of quaternary structures from protein crystals

Bliven, S.; Lafita, A.; Parker, A.; Capitani, G.; Duarte, J. M.

10.1101/224717 — bioinformatics — Posted on 2017-12-28

112 The interaction landscape between transcription factors and the nucleosome

Zhu, F.; Fanung, L.; Kaasinen, E.; Sahu, B.; Yin, Y.; Wei, B.; Dodonova, S.; Cramer, P.; Taipale, J.

10.1101/240598 — systems biology — Posted on 2017-12-28

113 Boosting ATM Activity Promotes Longevity in Nematodes and Mice

Qian, M.; Liu, Z.; Peng, L.; Meng, F.; Tang, X.; Ao, Y.; Shi, L.; Zhou, M.; Wang, M.; Qin, B.; Cao, X.; Wang, Z.; Zhou, Z.; Liu, B.

10.1101/240606 — molecular biology — Posted on 2017-12-28

114 Dynamic Optimization with Particle Swarms (DOPS): A meta-heuristic for parameter estimation in biochemical models

Varner, J.; Sagar, A.; LeCover, R.; Shoemaker, C.

10.1101/240580 — systems biology — Posted on 2017-12-28

115 Sequence Specific Modeling of E. coli Cell-Free Protein Synthesis

Vilkhovoy, M.; Horvath, N.; Shih, C.-h.; Wayman, J.; Calhoun, K.; Swartz, J.; Varner, J.

10.1101/139774 — synthetic biology — Posted on 2017-12-28

116 Decoding the gene co-expression network underlying the ability of Gevuina avellana Mol. to live in diverse light conditions

Ostria-Gallardo, E.; Ranjan, A.; Ichihashi, Y.; Corcuera, L.; Sinha, N.

10.1101/240572 — plant biology — Posted on 2017-12-28

117 Broad spectrum proteomics analysis of the inferior Colliculus following acute hydrogen sulfide exposure

Kim, D.-S.; Anantharam, P.; Hoffman, A.; Meade, M. L.; Grobe, N.; Gearhart, J. M.; Whitley, E. M.; Mahama, B.; Rumbeiha, W. K.

10.1101/237370 — pharmacology and toxicology — Posted on 2017-12-28

118 Nanjinganthus: An Unexpected Flower from the Jurassic of China

FU, Q.; DIEZ, J. B.; POLE, M.; GARCIA-AVILA, M.; LIU, Z.-J.; CHU, H.; HOU, Y.; YIN, P.; ZHANG, G.-Q.; DU, K.; WANG, X.

10.1101/240226 — paleontology — Posted on 2017-12-27

119 50 Hz volumetric functional imaging with continuously adjustable depth of focus

Lu, R.; Taminoto, M.; Koyama, M.; Ji, N.

10.1101/240069 — neuroscience — Posted on 2017-12-28

120 Calcium channel levels at single synapses predict release probability and are upregulated in homeostatic potentiation

O'Connor-Giles, K. M.; Gratz, S. J.; Bruckner, J. J.; Hernandez, R. X.; Khateeb, K.; Macleod, G.

10.1101/240051 — neuroscience — Posted on 2017-12-28

121 Task Engagement Enhances Population Encoding of Stimulus Meaning in Primary Auditory Cortex

Bagur, S.; Averseng, M.; Elgueda, D.; David, S.; Fritz, J.; Yin, P.; Shamma, S.; Boubenec, Y.; Ostojic, S.

10.1101/240556 — neuroscience — Posted on 2017-12-28

122 Prevalence of dual clarithromycin and metronidazole resistance in Helicobacter pylori estimated by molecular methods in Santiago, Chile

Gonzalez-Hormazabal, P.; Musleh, M.; Escandar, S.; Valladares, H.; Lanzarini, E.; Castro, V. G.; Jara, L.; Berger, Z.

10.1101/236976 — microbiology — Posted on 2017-12-28

123 B1a B cells require autophagy for metabolic homeostasis and self-renewal

Clarke, A. J.; Riffelmacher, T.; Braas, D.; Cornall, R. J.; Simon, A. K.

10.1101/240523 — immunology — Posted on 2017-12-28

124 Genome-wide CRISPR screens in T helper cells reveal pervasive cross-talk between activation and differentiation

Henriksson, J.; Chen, X.; Gomes, T.; Ullah, U.; Meyer, K. B.; Miragaia, R.; Duddy, G.; Pramanik, J.; Yusa, K.; Lahesmaa, R.; Teichmann, S. A.

10.1101/196022 — immunology — Posted on 2017-12-28

125 Juvenile honest food solicitation and parental investment as a life history strategy: a kin demographic selection model

Garay, J.; Csiszar, V.; Mori, T. F.; Szilagyi, A.; Varga, Z.; Szamado, S.

10.1101/240416 — evolutionary biology — Posted on 2017-12-28

126 Mineral facilitated horizontal gene transfer: A new principle for evolution of life?

Sand, K. K.; Jelavic, S.

10.1101/235531 — evolutionary biology — Posted on 2017-12-28

127 An ordered pattern of Ana2 phosphorylation by Plk4 is required for centriole assembly

McLamarrah, T. A.; Buster, D. W.; Galletta, B. J.; Boese, C. J.; Ryniawec, J. M.; Hollingsworth, N. A.; Byrnes, A. E.; Brownlee, C. W.; Slep, K. C.; Rusan, N. M.; Rogers, G. C.

10.1101/240374 — cell biology — Posted on 2017-12-28

128 Phospho-signal flow from a pole-localized microdomain spatially patterns transcription factor activity

Lasker, K.; von Diezmann, A.; Ahrens, D. G.; Mann, T. H.; Moerner, W. E.; Shapiro, L.

10.1101/220293 — cell biology — Posted on 2017-12-28

129 Resolution limit of image analysis algorithms

Cohen, E. A. K.; Abraham, A. V.; Ober, R. J.

10.1101/240531 — biophysics — Posted on 2017-12-28

130 Whisper: Read sorting allows robust mapping of sequencing data

Deorowicz, S.; Debudaj-Grabysz, A.; Gudys, A.; Grabowski, S.

10.1101/240358 — bioinformatics — Posted on 2017-12-28

131 MSAC: Compression of multiple sequence alignment files

Deorowicz, S.; Walczyszyn, J.; Debudaj-Grabysz, A.

10.1101/240341 — bioinformatics — Posted on 2017-12-28

132 Predictions of Protein-Protein Interactions in Schistosoma mansoni

White Bear, J.; McKerrow, J. H.

10.1101/233072 — bioinformatics — Posted on 2017-12-28

133 Tissue disorder strength measured by quantitative phase imaging as intrinsic cancer marker

Takabayashi, M.; Majeed, H.; Kajdacsy-Balla, A.; Popescu, G.

10.1101/240457 — bioengineering — Posted on 2017-12-28

134 Mechanism of Membrane Recovery in Intra-Cytoplasmic Sperm Injection

Li, R.; Chang, H.; Luo, B.

10.1101/240200 — bioengineering — Posted on 2017-12-28

135 Isoxanthopterin: An Optically Functional Biogenic Crystal in the Eyes of Decapod Crustaceans

Palmer, B. A.; Hirsch, A.; Brumfeld, V.; Aflalo, E. D.; Pinkas, I.; Sagi, A.; Rozenne, S.; Oron, D.; Leiserowitz, L.; Kronik, L.; Weiner, S.; Addadi, L.

10.1101/240366 — bioengineering — Posted on 2017-12-28

136 The structure of SALM5 suggests a dimeric assembly for the presynaptic RPTP ligand recognition

Karki, S.; Paudel, P.; Sele, C.; Shkumatov, A. V.; Kajander, T.

10.1101/225821 — biochemistry — Posted on 2017-12-28

137 Muon Radiation Dose and Marine Megafaunal Extinction at the end-Pliocene Supernova

Melott, A.; Marinho, F.; Paulucci, L.

10.1101/240093 — paleontology — Posted on 2017-12-28

138 MEG/EEG group study with MNE: recommendations, quality assessments and best practices

Jas, M.; Larson, E.; Engemann, D.-A.; Leppakangas, J.; Taulu, S.; Hamalainen, M.; Gramfort, A.

10.1101/240044 — neuroscience — Posted on 2017-12-28

139 Deep image reconstruction from human brain activity

Shen, G.; Horikawa, T.; Majima, K.; Kamitani, Y.

10.1101/240317 — neuroscience — Posted on 2017-12-28

140 Examining molecular determinants underlying heterogeneity of synaptic release probability using optical quantal imaging

Akbergenova, Y.; Zhang, Y. V.; Weiss-Sharabi, S.; Cunningham, K. L.; Littleton, J. T.

10.1101/240549 — neuroscience — Posted on 2017-12-28

141 Confidence modulates exploration and exploitation in value-based learning

Boldt, A.; Blundell, C.; De Martino, B.

10.1101/236026 — neuroscience — Posted on 2017-12-28

142 Neural computations combine low- and high-order motion cues similarly, in dragonfly and monkey

Nitzany, E.; Menda, G.; Shamble, P. S.; Golden, J. R.; Hu, Q.; Hoy, R. R.; Victor, J.

10.1101/240101 — neuroscience — Posted on 2017-12-28

143 Individual differences in motor noise and adaptation rate are optimally related

van der Vliet, R.; Frens, M. A.; de Vreede, L.; Jonker, Z.; Ribbers, G. M.; Selles, R. W.; van der Geest, J.; Donchin, O.

10.1101/238865 — neuroscience — Posted on 2017-12-28

144 CA2 Neuronal Activity Controls Hippocampal Oscillations and Social Behavior

Alexander, G.; Brown, L.; Farris, S.; Lustberg, D.; Pantazis, C.; Gloss, B.; Plummer, N.; Riddick, N.; Moy, S.; Jensen, P.; Dudek, S.

10.1101/190504 — neuroscience — Posted on 2017-12-28

145 Mendelian inheritance errors in whole genome sequenced trios are enriched in repeats and cluster within copy number losses

Kothiyal, P.; Wong, W. S.; Bodian, D. L.; Niederhuber, J. E.

10.1101/240424 — genomics — Posted on 2017-12-28

146 Quartz-Seq2: a high-throughput single-cell RNA-sequencing method that effectively uses limited sequence reads

Sasagawa, Y.; Danno, H.; Takada, H.; Ebisawa, M.; Tanaka, K.; Hayashi, T.; Kurisaki, A.; Nikaido, I.

10.1101/159384 — genomics — Posted on 2017-12-28

147 Species delimitation in the presence of strong incomplete lineage sorting and hybridization

Weber, A. A.-T.; Stöhr, S.; Chenuil, A.

10.1101/240218 — evolutionary biology — Posted on 2017-12-28

148 One problem, too many solutions: How costly is honest signalling of need?

Szamado, S.; Czegel, D.; Zachar, I.

10.1101/240440 — evolutionary biology — Posted on 2017-12-28

149 Natural selection on plasticity of thermal traits in a highly seasonal environment

Bacigalupe, L. D.; Barria, A. M.; Gonzalez-Mendez, A.; Ruiz-Aravena, M.; Gaitan-Espitia, J. D.; Trinder, M.; Sinervo, B.

10.1101/191825 — evolutionary biology — Posted on 2017-12-28

150 POLLINATOR SPECIES RICHNESS TRENDS: NO DECELERATING DECLINES IN DUTCH BEES AND BUMBLEBEES

Van Dooren, T.

10.1101/240432 — ecology — Posted on 2017-12-28

151 sFlt-1 (sVEGFR1) induces placental endoplasmic reticulum stress in trophoblast cell: implications for the complications in preeclampsia - an in vitro study

Mochan, S.; Dhingra, M. K.; Varghese, B.; Gupta, S. K.; saxena, S.; Arora, P.; Rani, N.; Sharma, A.; Luthra, K.; Dwivedi, S.; Bhatla, N.; Kumar, R.; Dhingra, R.

10.1101/240481 — developmental biology — Posted on 2017-12-28

152 Short-term hyperglycaemia induces motor defects in C. elegans.

Shirdhankar, R.; Sorathia, N.; Rajyadhyaksha, M.

10.1101/240473 — cell biology — Posted on 2017-12-28

153 A measure of vascular reactivity to overcome neurovascular uncoupling in functional imaging of brain tumors: initial results

Voss, H. U.; Peck, K. K.; Petrovich Brennan, N. M.; Holodny, A. I.

10.1101/240085 — cancer biology — Posted on 2017-12-28

154 De novo profile generation based on sequence context specificity with the long short-term memory network

Yamada, K. D.; Kinoshita, K.

10.1101/240515 — bioinformatics — Posted on 2017-12-28

155 False discovery rate estimation and heterobifunctional cross-linkers

Fischer, L.; Rappsilber, J.

10.1101/239715 — bioinformatics — Posted on 2017-12-28

156 ClassificaIO: machine learning for classification graphical user interface

Roushangar, R.; Mias, G. I.

10.1101/240184 — bioinformatics — Posted on 2017-12-28

157 bcGST - an interactive bias-correction method to identify over-represented gene-sets in boutique arrays

Wang, K. Y.; Menzies, A.; Silva, I.; Wilmott, J.; Yan, Y.; Wongchenko, M.; Kefford, R.; Scolyer, R.; Long, G.; Tarr, G.; Mueller, S.; Yang, J.

10.1101/240234 — bioinformatics — Posted on 2017-12-28

158 Far-UVC light: A new tool to control the spread of airborne-mediated microbial diseases

Welch, D.; Buonanno, M.; Grilj, V.; Shuryak, I.; Crickmore, C.; Bigelow, A. W.; Randers-Pehrson, G.; Johnson, G. W.; Brenner, D. J.

10.1101/240408 — bioengineering — Posted on 2017-12-28

159 Barcoding analysis of HIV drug resistance mutations using Oxford Nanopore MinION (ONT) sequencing

Gonzalez, C.; Gondola, J.; Ortiz, A. Y.; Castillo, J. A.; Pascale, J. M.; Martinez, A. A.

10.1101/240077 — genomics — Posted on 2017-12-27

160 Nanjinganthus:An Unexpected Flower from the Jurassic of China

fu, q.; DIEZ, J. B.; POLE, M.; GARCIA-AVILA, M.; LIU, Z.-J.; CHU, H.; Hou, Y.; YIN, P.; ZHANG, G.-Q.; DU, K.; WANG, X.

10.1101/240226 — paleontology — Posted on 2017-12-27

161 Bivariate Gaussian Mixture Model of GWAS (BGMG)quantifies polygenic overlap between complex traitsbeyond genetic correlation

Frei, O.; Holland, D.; Smeland, O. B.; Shadrin, A. A.; Fan, C. C.; Witoelar, A.; Wang, Y.; Djurovic, S.; Thompson, W.; Andreassen, O. A.; Dale, A. M.

10.1101/240275 — genetics — Posted on 2017-12-27

162 Image-based tracking of ripening in wheat cultivar mixtures: a quantifying approach parallel to the conventional phenology

Haghshenas, A.; Emam, Y.

10.1101/239798 — plant biology — Posted on 2017-12-27

163 Quantitative Analysis on the role of Raffinose Synthase in Hippocampal Neurons

Singh, S. P.; Singh, V. P.

10.1101/240192 — neuroscience — Posted on 2017-12-27

164 Fine-grained genetic-environment association in an admixed population of mussels in the small isolated Kerguelen island

Fraisse, C.; Haguenauer, A.; Gerard, K.; Weber, A. A.-T.; Bierne, N.; Chenuil, A.

10.1101/239244 — evolutionary biology — Posted on 2017-12-27

165 Sex-determination and sex chromosomes are shared across the radiation of dioecious Nepenthes pitcher plants

Scharmann, M.; Grafe, T. U.; Metali, F.; Widmer, A.

10.1101/240259 — evolutionary biology — Posted on 2017-12-27

166 SeqsLab: an integrated platform for cohort-based annotation and interpretation of genetic variants on Spark

Chang, M.-T.; Tung, Y.-A.; Chung, J.-M.; Yao, H.-F.; Li, Y.-L.; Lin, Y.-H.; Wang, Y.-T.; Chen, C.-Y.; Su, C.-T.

10.1101/239962 — bioinformatics — Posted on 2017-12-27

167 Interaction of quercetin with transcriptional regulator LasR of Pseudomonas aeruginosa: Mechanistic insights of the inhibition of virulence through quorum sensing

Grabski, H.; Hunanyan, L.; Tiratsuyan, S.; Vardapetyan, H.

10.1101/239996 — bioinformatics — Posted on 2017-12-27

168 Self-assembling all-enzyme hydrogels for biocatalytic flow processes

Peschke, T.; Gallus, S.; Bitterwolf, P.; Hu, Y.; Oelschlaeger, C.; Willenbacher, N.; Rabe, K. S.; Niemeyer, C. M.

10.1101/240325 — biochemistry — Posted on 2017-12-27

169 A minimal "push-pull" bistability model explains oscillations between quiescent and proliferative cell states.

Krishna, S.; Laxman, S.

10.1101/239897 — systems biology — Posted on 2017-12-27

170 Revisiting criteria for plant miRNA annotation in the era of big data

Axtell, M. J.; Meyers, B. C.

10.1101/213314 — plant biology — Posted on 2017-12-27

171 A primate specific loss of function polymorphism in TLR2 gene decreases inflammation and protects humans from organ dysfunction in Malaria

Panda, A.; Das, B.; Tripathy, R.; Satyapathy, A.; Sharma, S.; Ravindran, B.

10.1101/239129 — immunology — Posted on 2017-12-27

172 Reproducibility and repeatability of six high-throughput 16S rDNA sequencing protocols for microbiota profiling

Raju, S.; Lagstrom, S.; Ellonen, P.; De Vos, W. M.; Eriksson, J.; Weiderpass, E.; Rounge, T. B.

10.1101/210880 — microbiology — Posted on 2017-12-27

173 Integrative analysis reveals genomic and epigenomic signatures of super-enhancers and its constituents

Khan, A.; Zhang, X.

10.1101/105262 — genomics — Posted on 2017-12-27

174 The Evolution Of Covert Signaling

Smaldino, P. E.; Flamson, T. J.; McElreath, R.

10.1101/132407 — evolutionary biology — Posted on 2017-12-27

175 Coadapted genomes and selection on hybrids: Fisher’s geometric model explains a variety of empirical patterns

Simon, A.; Bierne, N.; Welch, J. J.

10.1101/237925 — evolutionary biology — Posted on 2017-12-27

176 High JNK following Ras/Rpr/Tak1 over-expression in eye discs of Drosophila reduces post-pupariation ecdysone via Dilp8 causing early pupal death

Ray, M.; Lakhotia, S. C.

10.1101/049882 — developmental biology — Posted on 2017-12-27

177 BBSome trains remove activated GPCRs from cilia by enabling passage through the transition zone

Ye, F.; Nager, A. R.; Nachury, M. V.

10.1101/180620 — cell biology — Posted on 2017-12-27

178 Role of the Visual Experience-Dependent Nascent Proteome in Neuronal Plasticity

Liu, H.-H.; McClatchy, D.; Schiapparelli, L.; Shen, W.; Yates, J. R.; Cline, H. T.

10.1101/240119 — neuroscience — Posted on 2017-12-27

179 Cell-autonomous regulation of structural and functional plasticity in inhibitory neurons by excitatory synaptic inputs

He, H.; Shen, W.; Zheng, L.; Guo, X.; Cline, H. T.

10.1101/240176 — neuroscience — Posted on 2017-12-27

180 Modularity of the metabolic gene network as a prognostic biomarker for hepatocellular carcinoma

Ye, F.; Jia, D.; Lu, M.; Levine, H.; Deem, M.

10.1101/224998 — cancer biology — Posted on 2017-12-26

181 Auxin regulates endosperm cellularization in Arabidopsis

Figueiredo, D. D.; Batista, R. A.; Kohler, C.

10.1101/239301 — plant biology — Posted on 2017-12-26

182 Cdk9, Spt5 and histone H2B mono-ubiquitylation cooperate to ensure antisense suppression by the Clr6-CII/Rpd3S HDAC complex

Sanso, M.; Pinto, D.; Svensson, P.; Page, V.; Parua, P. K.; Bitton, D. A.; Mbogning, J.; Garcia, P.; Hidalgo, E.; Robert, F.; Bahler, J.; Tanny, J.; Fisher, R. P.

10.1101/240135 — molecular biology — Posted on 2017-12-26

183 In vivo imaging of radial spoke proteins reveals independent assembly and turnover of the spoke head and stalk

Lechtreck, K.; Mengoni, I.; Okivie, B.; Hilderhoff, K. B.

10.1101/240143 — cell biology — Posted on 2017-12-26

184 The ancestral animal genetic toolkit revealed by diverse choanoflagellate transcriptomes

Richter, D.; Fozouni, P.; Eisen, M.; King, N.

10.1101/211789 — evolutionary biology — Posted on 2017-12-26

185 Evaluation of nutrient stoichiometric relationships amongst ecosystem compartments of a subtropical treatment wetland. Fine-scale analysis of wetland nutrient stoichiometry.

Julian, P.; Gerber, S.; Bhomia, R.; King, J.; Osborne, T. Z.; Wright, A. L.

10.1101/220186 — ecology — Posted on 2017-12-26

186 Viral replication modes in single-peak fitness landscapes: a dynamical systems analysis

Forners, J.; Lazaro, T.; Alarcon, T.; Elena, S. F.; Sardanyes, J.

10.1101/239921 — systems biology — Posted on 2017-12-26

187 Comparing the differentiation potential of Brachyury+ mesodermal cells generated from 3-D and 2-D culture systems

Zhou, J.; Plagge, A.; Murray, P.

10.1101/239913 — developmental biology — Posted on 2017-12-26

188 Transcriptional dysregulation study reveals a core network involving the genesis for Alzheimer’s disease

Meng, G.; Mei, H.

10.1101/240002 — systems biology — Posted on 2017-12-26

189 A Near Complete Zonal Map of Mouse Olfactory Receptors

Tan, L.; Xie, X.

10.1101/234187 — neuroscience — Posted on 2017-12-26

190 Comprehensive profiling of TCRβ repertoire in a non-model species (the bank vole) using high-throughput sequencing

Migalska, M.; Sebastian, A.; Radwan, J.

10.1101/217653 — immunology — Posted on 2017-12-26

191 Extensive sex differences at the initiation of genetic recombination

Brick, K.; Thibault-Sennett, S.; Smagulova, F.; Lam, K. W.; Pu, Y.; Pratto, F.; Camerini-Otero, R. D.; Petukhova, G. V.

10.1101/235002 — genomics — Posted on 2017-12-26

192 WSL5, a pentatricopeptide repeat protein, is essential for chloroplast biogenesis in rice under cold stress

Liu, X.; Lan, J.; Huang, Y.; Cao, P.; Zhou, C.; Ren, Y.; He, N.; Liu, S.; Tian, Y.; Nguyen, T.; Jiang, L.; Wan, J.

10.1101/239905 — genetics — Posted on 2017-12-26

193 Frequent Non-random Shifts in the Temporal Sequence of Developmental Landmark Events during Fish Evolutionary Diversification

Ito, F.; Matsumoto, T.; Hirata, T.

10.1101/239954 — evolutionary biology — Posted on 2017-12-26

194 Reproducible Bioinformatics Project: A community for reproducible bioinformatics analysis pipelines

Kulkarni, N.; Alessandri, L.; Panero, R.; Arigoni, M.; Olivero, M.; Cordero, F.; Beccuti, M.; Calogero, R. A.

10.1101/239947 — bioinformatics — Posted on 2017-12-26

195 A 23bp Indel Polymorphism in TLR2 Gene Enhances Inflammation and Disease Severity in Dengue

Patro, A. R. K.; Mohanty, S.; Panda, A. K.; Prusty, B. K.; Singh, D. K.; Gaikwad, S.; Saswat, T.; Chattopadhyay, S.; Tripathy, R.; Das, B.; Ravindran, B.

10.1101/239988 — microbiology — Posted on 2017-12-26

196 Optimal planning of eye movements

Hoppe, D.; Rothkopf, C. A.

10.1101/240010 — animal behavior and cognition — Posted on 2017-12-26

197 Non-cell autonomous Otx2 homeoprotein regulates visual cortex plasticity through Gadd45b

Apulei, J.; Kim, N.; Testa, D.; Ribot, J.; Morizet, D.; Bernard, C.; Jourdren, L.; Blugeon, C.; Di Nardo, A. A.; Prochiantz, A.

10.1101/163071 — neuroscience — Posted on 2017-12-26

198 Predicting resistance of clinical Abl mutations to targeted kinase inhibitors using alchemical free-energy calculations

Hauser, K.; Negron, C.; Albanese, S. K.; Ray, S.; Steinbrecher, T.; Abel, R.; Chodera, J. D.; Wang, L.

10.1101/239012 — cancer biology — Posted on 2017-12-26

199 Bundle-sheath cells are internal leaf "water valves" controlled via xylem acidification by H+-ATPase

Wigoda, N.; Grunwald, Y.; Yaaran, A.; Sade, N.; Torne, T.; Gosa, S. C.; Moran, N.; Moshelion, M.

10.1101/234286 — plant biology — Posted on 2017-12-26

200 Paradigm Shift in Sensorimotor Control Research and Brain Machine Interface Control: The Influence of Context on Sensorimotor representations

Zhao, Y.; Hessburg, J. P.; Asok Kumar, J. N.; Francis, J. T. T.

10.1101/239814 — neuroscience — Posted on 2017-12-26

201 Evolutionary Origin of the Mammalian Hematopoietic System Found in a Colonial Chordate

Rosental, B.; Kowarsky, M. A.; Seita, J.; Corey, D. M.; Ishizuka, K. J.; Palmeri, K. J.; Chen, S.-Y.; Sinha, R.; Okamoto, J.; Mantalas, G.; Manni, L.; Raveh, T.; Clarke, D. N.; Newman, A. M.; Neff, N. F.; Nolan, G. P.; Quake, S. R.; Weissman, I. L.; Voskoboynik, A.

10.1101/206318 — immunology — Posted on 2017-12-26

202 Genetic structure of the grey side-gilled sea slug (Pleurobranchaea maculata) in coastal waters of New Zealand

Yildirim, Y.; Anderson, M. J.; Patel, S.; Millar, C. D.; Rainey, P. B.

10.1101/239855 — genetics — Posted on 2017-12-26

203 A cloning-free method for CRISPR/Cas9-mediated genome editing in fission yeast

Zhang, X.-R.; He, J.-B.; Wang, Y.-Z.; Du, L.-L.

10.1101/239673 — genetics — Posted on 2017-12-26

204 Efficient graph-color compression with neighborhood-informed Bloom filters

Schilken, I.; Mustafa, H.; Rätsch, G.; Eickhoff, C.; Kahles, A.

10.1101/239806 — bioinformatics — Posted on 2017-12-26

205 Accelerating SNP genotyping from whole genome sequencing data for bedside diagnostics

Sun, C.; Medvedev, P.

10.1101/239871 — bioinformatics — Posted on 2017-12-26

206 In vivo clonal analysis reveals spatiotemporal regulation of thalamic nucleogenesis

Wong, S.; Scott, E. P.; Borgenheimer, E.; Freeman, M.; Ming, G.-l.; Wu, Q.-F.; Song, H.; Nakagawa, Y.

10.1101/238964 — neuroscience — Posted on 2017-12-26

207 TARGETED SEARCHES FOR NOVEL PEPTIDES IN BIG MASS SPECTROMETRY DATA SETS

Gao, Y.; Ma, J.; Saghatelian, A.; Yates, J. R.

10.1101/239863 — bioinformatics — Posted on 2017-12-25

208 Clustering enzymes using E.coli inner cell membrane as scaffold in metabolic pathway

Wang, Y.; Wu, Y.; Suo, Y.; Guo, H.; Yu, Y.; Yin, R.; Xi, R.; Wu, J.; Hua, N.; Zhang, Y.; Zhang, S.; Jin, Z.; Wang, Y.; He, L.; Ma, G.

10.1101/230425 — synthetic biology — Posted on 2017-12-25

209 Cooperativity in Plant Plasma Membrane Intrinsic Proteins (PIPs): Mechanism of Increased Water Transport in Maize PIP1 Channels in Hetero-tetramers

Vajpai, M.; Mukherjee, M.; Sankararamakrishnan, R.

10.1101/239780 — biophysics — Posted on 2017-12-25

210 Rethinking dopamine prediction errors

Gershman, S. J.; Schoenbaum, G.

10.1101/239731 — neuroscience — Posted on 2017-12-25

211 Was maize domesticated in the Balsas Basin? Complex patterns of genetic divergence, gene flow and ancestral introgressions among Zea subspecies suggest an alternative scenario

Moreno Letelier, A.; Aguirre Liguori, J. A.; Tenaillon, M. I.; Pinero, D.; Gaut, B. S.; Vazquez Lobo, A.; Eguiarte, L. E.

10.1101/239707 — evolutionary biology — Posted on 2017-12-25

212 Recruitment and abundance of intertidal barnacles and mussels along the Atlantic Canadian coast: pelagic influences and relationships with predator abundance

Scrosati, R. A.; Ellrich, J. A.

10.1101/239756 — ecology — Posted on 2017-12-25

213 Equivalent high-resolution identification of neuronal cell types with single-nucleus and single-cell RNA-sequencing

Bakken, T. E.; Hodge, R. D.; Miller, J. M.; Yao, Z.; Nguyen, T. N.; Aevermann, B.; Barkan, E.; Bertagnolli, D.; Casper, T.; Dee, N.; Garren, E.; Goldy, J.; Gray, L. T.; Kroll, M.; Lasken, R. S.; Lathia, K.; Parry, S.; Rimorin, C.; Scheuermann, R. H.; Schork, N. J.; Shehata, S. I.; Tieu, M.; Smith, K. A.; Zeng, H.; Lein, E. S.; Tasic, B.

10.1101/239749 — neuroscience — Posted on 2017-12-25

214 Genome-wide stability of the DNA replication program in single mammalian cells

Takahashi, S.; Miura, H.; Shibata, T.; Nagao, K.; Okumura, K.; Ogata, M.; Obuse, C.; Takebayashi, S.-i.; Hiratani, I.

10.1101/237628 — genomics — Posted on 2017-12-25

215 Digital museum of retinal ganglion cells with dense anatomy and physiology

Bae, J. A.; Mu, S.; Kim, J. S.; Turner, N. L.; Tartavull, I.; Kemnitz, N.; Jordan, C. S.; Norton, A. D.; Silversmith, W. M.; Prentki, R.; Sorek, M.; David, C.; Jones, D. L.; Bland, D.; Sterling, A. L. R.; Park, J.; Briggman, K. L.; Seung, H. S.; the EyeWirers,

10.1101/182758 — neuroscience — Posted on 2017-12-25

216 The null additivity of multi-drug combinations

Russ, D.; Kishony, R.

10.1101/239517 — systems biology — Posted on 2017-12-25

217 An ancient integration in a plant NLR is maintained as a trans-species polymorphism

Brabham, H. J.; Hernandez-Pinzon, I.; Holden, S.; Lorang, J.; Moscou, M. J.

10.1101/239541 — plant biology — Posted on 2017-12-25

218 Glyoxalase (GLO1) inhibition or genetic overexpression does not alter ethanol locomotor effects: implications for GLO1 as a therapeutic target in alcohol use disorders

Barkley-Levenson, A. M.; Lagarda, F. A.; Palmer, A. A.

10.1101/239624 — neuroscience — Posted on 2017-12-25

219 Epigenomic and genomic landscape of Drosophila melanogaster heterochromatic genes

Saha, P.; Sowpati, D. T.; Mishra, R. K.

10.1101/239483 — genomics — Posted on 2017-12-25

220 An optimized strategy for cloning-based locus-specific bisulfite sequencing PCR

Van Poucke, M.; Boulougouris, X.; De Spiegeleer, B.; Burvenich, C.; Duchateau, L.; Peelman, L.

10.1101/239566 — genomics — Posted on 2017-12-25

221 Consortium genome-wide meta-analysis for childhood dental caries traits

Haworth, S.; Shungin, D.; van der Tas, J. T.; Vucic, S.; Medina Gomez, C.; Yakimov, V.; Feenstra, B.; Shaffer, J. R.; Lee, M. K.; Standl, M.; Thiering, E.; Wang, C.; Bonnelykke, K.; Waage, J.; Jessen, L. E.; Norrisgaard, P. E.; Joro, R.; Seppälä, I.; Raitakari, O.; Dudding, T.; Grgic, O.; Ongkosuwito, E.; Vierola, A.; Eloranta, A.-M.; West, N. X.; Thomas, S. J.; McNeil, D. W.; Levy, S. M.; Slayton, R.; Nohr, E. A.; Lehtimäki, T.; Lakka, T.; Bisgaard, H.; Pennell, C.; Kühnisch, J.; Marazita, M. L.; Melbye, M.; Geller, F.; Rivadeneira, F.; Wolvius, E. B.; Franks,

10.1101/238824 — genetics — Posted on 2017-12-25

222 A study of Kibbutzim in Israel reveals risk factors for cardiometabolictraits and subtle population structure

Granot-Hershkovitz, E.; Karasik, D.; Friedlander, Y.; Rodriguez-Murillo, L.; Dorajoo, R.; Liu, J.; Sewda, A.; Peter, I.; Carmi, S.; Hochner, H.

10.1101/239509 — genetics — Posted on 2017-12-25

223 AMBER: Assessment of Metagenome BinnERs

Meyer, F.; Hofmann, P.; Belmann, P.; Garrido-Oter, R.; Fritz, A.; Sczyrba, A.; McHardy, A. C.

10.1101/239582 — bioinformatics — Posted on 2017-12-25

224 Active learning reveals underlying decision strategies

Parpart, P.; Schulz, E.; Speekenbrink, M.; Love, B. C.

10.1101/239558 — animal behavior and cognition — Posted on 2017-12-25

225 Caste-biased movements by termites in isolation

Shimoji, H.; Mizumoto, N.; Oguchi, K.; Dobata, S.

10.1101/239475 — animal behavior and cognition — Posted on 2017-12-25

226 CA1 And CA3 Differentially Support Spontaneous Retrieval Of Episodic Contexts Within Human Hippocampal Subfields

Dimsdale-Zucker, H. R.; Ritchey, M.; Ekstrom, A. D.; Yonelinas, A. P.; Ranganath, C.

10.1101/142349 — neuroscience — Posted on 2017-12-24

227 ketu mutant mice uncover an essential meiotic function for the ancient RNA helicase YTHDC2

Jain, D.; Puno, M. R.; Meydan, C.; Lailler, N.; Mason, C. E.; Lima, C. D.; Anderson, K. V.; Keeney, S.

10.1101/171827 — genetics — Posted on 2017-12-24

228 Revelation of the Genetic Basis for Convergent Innovative Anal Fin Pigmentation Patterns in Cichlid Fishes

Gu, L.; Xia, C.

10.1101/165217 — evolutionary biology — Posted on 2017-12-24

229 From lake to estuary, the tale of two waters. A study of aquatic continuum biogeochemistry

Julian, P.; Osborne, T. Z.

10.1101/184101 — ecology — Posted on 2017-12-24

230 Predicting resistance of clinical Abl mutations to targeted kinase inhibitors using alchemical free-energy calculations

Hauser, K.; Negron, C.; Albanese, S. K.; Ray, S.; Steinbrecher, T.; Abel, R.; Chodera, J. D.; Wang, L.

10.1101/239012 — cancer biology — Posted on 2017-12-24

231 Dynamic Phase Synchrony based Ranked Spatio-Temporal Clustering for Tracking Time-Resolved Functional Brain Networks

Aggarwal, P.; Gupta, A.

10.1101/172981 — neuroscience — Posted on 2017-12-24

232 Expressed Exome Capture Sequencing (EecSeq): a method for cost-effective exome sequencing for all organisms with or without genomic resources

Puritz, J. B.; Lotterhos, K. E.

10.1101/223735 — genomics — Posted on 2017-12-24

233 BEHAVIOR VARIABILITY OF A CONDITIONAL GENE KNOCKOUT MOUSE IS AMEASURE OF SUBTLE PHENOTYPIC TRAIT EXPRESSION. THE CASE OF MOUSEEXECUTIVE FUNCTION DISTORTION

Prosselkov, P.; Zhang, Q.; Goto, H.; Polygalov, D.; McHugh, T. J.; Itohara, S.

10.1101/229856 — genetics — Posted on 2017-12-24

234 An unconventional NOI/RIN4 domain of a rice NLR protein binds host EXO70 protein to confer fungal immunity

Fujisaki, K.; Abe, Y.; Kanzaki, E.; Ito, K.; Utsushi, H.; Saitoh, H.; Białas, A.; Banfield, M.; Kamoun, S.; Terauchi, R.

10.1101/239400 — plant biology — Posted on 2017-12-24

235 Rotary jet-spun porous microfibers as scaffolds for stem cells delivery to central nervous system injury

Zamproni, L. N.; Grinet, M. A.; Mundim, M. T.; Reis, M. B.; Galindo, L. T.; Marciano, F. R.; Lobo, A. O.; Porcionatto, M.

10.1101/239194 — neuroscience — Posted on 2017-12-24

236 3D Axonal Morphometry of White Matter

Abdollahzadeh, A.; Belevich, I.; Jokitalo, E.; Tohka, J.; Sierra, A.

10.1101/239228 — neuroscience — Posted on 2017-12-24

237 High-throughput optical mapping of replicating DNA

De Carli, F.; Menezes, N.; Berrabah, W.; Barbe, V.; Genovesio, A.; Hyrien, O.

10.1101/239251 — genomics — Posted on 2017-12-24

238 SAKE (Single-cell RNA-Seq Analysis and Klustering Evaluation) Identifies Markers of Resistance to Targeted BRAF Inhibitors in Melanoma Cell Populations

Ho, Y.-J.; Anaparthy, N.; Molik, D.; Aicher, T.; Patel, A.; Hicks, J.; Gale Hammell, M.

10.1101/239319 — genomics — Posted on 2017-12-24

239 Shared Genetic Contributions to Atrial Fibrillation and Ischemic Stroke Risk

Pulit, S. L.; Weng, L.-C.; McArdle, P. F.; Trinquart, L.; Huan Choi, S.; Mitchell, B. D.; Rosand, J.; de Bakker, P. I.; Benjamin, E. J.; Ellinor, P. T.; Kittner, S. J.; Lubitz, S. A.; Anderson, C. D.; Atrial Fibrillation Genetics Consortium, ; International Stroke Genetics Consortium,

10.1101/239269 — genetics — Posted on 2017-12-24

240 A complex performance landscape for suction-feeding reveals constraints and adaptations in a population of reef damselfish

Keren, T.; Kiflawi, M.; Martin, C.; China, V.; Mann, O.; Holzman, R.

10.1101/239418 — evolutionary biology — Posted on 2017-12-24

241 Coadapted genomes and selection on hybrids: Fisher’s geometric model explains a variety of empirical patterns

Simon, A.; Bierne, N.; Welch, J. J.

10.1101/237925 — evolutionary biology — Posted on 2017-12-24

242 Caring for parents: an evolutionary rationale

Garay, J.; Szamado, S.; Varga, Z.; Szathmary, E.

10.1101/239285 — evolutionary biology — Posted on 2017-12-24

243 MatSim: Monte Carlo simulation for the generation of mating tables

Carvajal-Rodriguez, A.

10.1101/239178 — evolutionary biology — Posted on 2017-12-24

244 Competitive release from native range does not predict invasive success of a globally dominant exotic ant species

Yitbarek, S.; Perfecto, I.; Vandermeer, J.

10.1101/239277 — ecology — Posted on 2017-12-24

245 Contact-dependent cell communications drive morphological invariance during ascidian embryogenesis

Guignard, L.; Fiuza, U.-M.; Leggio, B.; Faure, E.; Laussu, J.; Hufnagel, L.; Malandain, G.; Godin, C.; Lemaire, P.

10.1101/238741 — developmental biology — Posted on 2017-12-24

246 Chromatin interaction data visualization in the WashU Epigenome Browser

Li, D.; Hsu, S.; Purushotham, D.; Wang, T.

10.1101/239368 — bioinformatics — Posted on 2017-12-24

247 DeepMHC: Deep Convolutional Neural Networks for High-performance peptide-MHC Binding Affinity Prediction

Hu, J.; Liu, Z.

10.1101/239236 — bioinformatics — Posted on 2017-12-24

248 FarmCPUpp: Efficient Large-Scale GWAS

Schnable, P. S.; Kusmec, A.

10.1101/238832 — bioinformatics — Posted on 2017-12-24

249 Modeling Spatio-temporal Dynamics of Chromatin Marks

Fiziev, P.; Ernst, J.

10.1101/239442 — bioinformatics — Posted on 2017-12-24

250 Upper Limit for Angular Compounding Speckle Reduction

Winetraub, Y.; Wu, C.; Chu, S.; de la Zerda, A.

10.1101/239350 — bioengineering — Posted on 2017-12-24

251 Brain, immune system and selenium: a starting point for a new diagnostic marker for Alzheimer’s disease?

Achilli, C.; Ciana, A.; Minetti, G.

10.1101/239293 — biochemistry — Posted on 2017-12-24

252 Association of Peripheral Blood Pressure with Grey Matter Volume in 19- to 40-Year-Old Adults

Schaare, H. L.; Kharabian Masouleh, S.; Beyer, F.; Kumral, D.; Uhlig, M.; Reinelt, J. D.; Reiter, A. M.; Lampe, L.; Babayan, A.; Erbey, M.; Roebbig, J.; Schroeter, M. L.; Okon-Singer, H.; Mueller, K.; Mendes, N.; Margulies, D. S.; Witte, A. V.; Gaebler, M.; Villringer, A.

10.1101/239160 — neuroscience — Posted on 2017-12-24

253 A primate specific loss of function polymorphism in TLR2 gene decreases inflammation and protects humans from organ dysfunction in Malaria

Panda, A.; Das, B.; Tripathy, R.; Satyapathy, A.; Sharma, S.; Ravindran, B.

10.1101/239129 — immunology — Posted on 2017-12-24

254 MAPLE: a Modular Automated Platform for Large-scale Experiments, a low-cost robot for integrated animal-handling and phenotyping

Alisch, T.; Crall, J. D.; Zucker, D.; de Bivort, B. L.

10.1101/239459 — bioengineering — Posted on 2017-12-24

255 “CapZyme-Seq” comprehensively defines promoter-sequence determinants for RNA 5’ capping with NAD+

Vvedenskaya, I. O.; Bird, J. G.; Zhang, Y.; Zhang, Y.; Jiao, X.; Barvik, I.; Krasny, L.; Kiledjian, M.; Taylor, D. M.; Ebright, R. H.; Nickels, B. E.

10.1101/239426 — biochemistry — Posted on 2017-12-24

256 MEG sensor patterns reflect perceptual but not categorical similarity of animate and inanimate objects

Proklova, D.; Kaiser, D.; Peelen, M.

10.1101/238584 — neuroscience — Posted on 2017-12-24

257 A divergent CheW stabilizes nucleoid-associated chemosensory arrays

Guiseppi, A.; Vicente, J.-J.; Barneoud, A.; Moine, A.; Espinosa, L.; Basse, M.-J.; Molle, V.; Mignot, T.; Roche, P.; Mauriello, E.

10.1101/239202 — microbiology — Posted on 2017-12-23

258 Cell-nonautonomous local and systemic responses to cell arrest enable long-bone catch-up growth

Rosello-Diez, A.; Madisen, L.; Bastide, S.; Zeng, H.; Joyner, A. L.

10.1101/218487 — developmental biology — Posted on 2017-12-23

259 A systematic approach for dissecting the molecular mechanisms of transcriptional regulation in bacteria

Belliveau, N. M.; Barnes, S. L.; Ireland, W. T.; Jones, D. L.; Sweredoski, M.; Moradian, A.; Hess, S.; Kinney, J. B.; Phillips, R.

10.1101/239335 — biophysics — Posted on 2017-12-23

260 Smart switching in feedforward control of grip force during manipulation of elastic objects

White, O.; Karniel, A.; Leib, R.; Papaxanthis, C.; Barbiero, M.; Nisky, I.

10.1101/194407 — neuroscience — Posted on 2017-12-23

261 Nutrient dynamics and stream order influence microbial community patterns along a 2914 km transect of the Mississippi River

Henson, M. W.; Hanssen, J.; Spooner, G.; Flemming, P.; Pukonen, M.; Stahr, F.; Thrash, J. C.

10.1101/091512 — microbiology — Posted on 2017-12-23

262 Wolbachia Infection Associated with Increased Recombination in Drosophila

Singh, N.

10.1101/238949 — genetics — Posted on 2017-12-23

263 An accurate and rapid continuous wavelet dynamic time warping algorithm for unbalanced global mapping in nanopore sequencing

Han, R.; Li, Y.; Wang, S.; Gao, X.

10.1101/238857 — bioinformatics — Posted on 2017-12-23

264 Testing the Efforts Model of Simultaneous Interpreting: An ERP Study

Koshkin, R.; Shtyrov, Y.; Ossadtchi, A.

10.1101/212951 — neuroscience — Posted on 2017-12-23

265 Sequence Transfer Learning for Neural Decoding

Elango, V.; Patel, A. N.; Miller, K. J.; Gilja, V.

10.1101/210732 — neuroscience — Posted on 2017-12-23

266 Lhx2 regulates temporal changes in chromatin accessibility and transcription factor binding in retinal progenitor cells.

Zibetti, C.; Liu, S.; Wan, J.; Qian, J.; Blackshaw, S.

10.1101/238279 — neuroscience — Posted on 2017-12-23

267 Host adaptation mediated by intergenic evolution in a bacterial pathogen

Khademi, H.; Jelsbak, L.

10.1101/236000 — microbiology — Posted on 2017-12-23

268 Exploring repositioning opportunities and side-effects of statins: a Mendelian randomization study of HMG-CoA reductase inhibition with 55 complex traits

So, H.-C.; Chau, C. K.-L.; Zhao, K.

10.1101/170241 — genetics — Posted on 2017-12-23

269 The genomics of local adaptation in trees: Are we out of the woods yet?

Lind, B. M.; Menon, M.; Bolte, C. E.; Faske, T. M.; Eckert, A. J.

10.1101/203307 — evolutionary biology — Posted on 2017-12-23

270 The whole-genome panorama of cancer drivers

Sabarinathan, R.; Pich, O.; Martincorena, I.; Rubio-Perez, C.; Juul, M.; Wala, J.; Schumacher, S.; Shapira, O.; Sidiropoulos, N.; Waszak, S.; Tamborero, D.; Mularoni, L.; Rheinbay, E.; Hornshoj, H.; Deu-Pons, J.; Muinos, F.; Bertl, J.; Guo, Q.; Creighton, C. J.; Weischenfeldt, J.; Korbel, J. O.; Getz, G.; Campbell, P. J.; Pedersen, J. S.; Beroukhim, R.; Perez-Gonzalez, A.; Lopez-Bigas, N.; PCAWG Drivers and Functional Interpretation Group, ; ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Net,

10.1101/190330 — cancer biology — Posted on 2017-12-23

271 STRetch: detecting and discovering pathogenic short tandem repeats expansions

Dashnow, H.; Lek, M.; Phipson, B.; Halman, A.; Davis, M.; Lamont, P.; Laing, N.; MacArthur, D.; Oshlack, A.

10.1101/159228 — bioinformatics — Posted on 2017-12-23

272 Controlled iris radiance in a diurnal fish looking at prey

Michiels, N. K.; Seeburger, V. C.; Kalb, N.; Meadows, M. G.; Anthes, N.; Mailli, A. A.; Jack, C. B.

10.1101/206615 — animal behavior and cognition — Posted on 2017-12-23

273 Deficient autophagy drives aging in Hydra

TOMCZYK, S.; SCHENKELAARS, Q.; SUKNOVIC, N.; WENGER, Y.; EKUNDAYO, K.; BUZGARIU, W.; BAUER, C.; FISCHER, K. E.; AUSTAD, S.; GALLIOT, B.

10.1101/236638 — cell biology — Posted on 2017-12-23

274 Δ9-tetrahydrocannabinol Attenuates Oxycodone Self-Administration Under Extended Access Conditions

Nguyen, J. D.; Grant, Y.; Creehan, K. M.; Hwang, C. S.; Vandewater, S.; Janda, K. D.; Cole, M.; Taffe, M. A.

10.1101/239038 — neuroscience — Posted on 2017-12-23

275 Predicting resistance of clinical Abl mutations to targeted kinase inhibitors using alchemical free-energy calculations

Hauser, K.; Negron, C.; Albanese, S. K.; Ray, S.; Steinbrecher, T.; Abel, R.; Chodera, J. D.; Wang, L.

10.1101/239012 — cancer biology — Posted on 2017-12-23

276 An accurate and rapid continuous wavelet dynamic time warping algorithm for unbalanced global mapping in nanopore sequencing

Han, R.; Li, Y.; Wang, S.; Gao, X.

10.1101/238857 — bioinformatics — Posted on 2017-12-23

277 Hematology, biochemistry, and toxicology of wild hawksbill turtles (Eretmochelys imbricata) nesting in mangrove estuaries in the eastern Pacific Ocean

Tauer, A. M.; Liles, M. J.; Chavarria, S.; Valle, M.; Amaya, S.; Quijada, G.; Melendez, O.; Rodriguez, S.; Lock, E. F.; Henriquez, A. V.; Gaos, A. R.; Seminoff, J. A.

10.1101/238956 — zoology — Posted on 2017-12-23

278 Tellurium Notebooks - An Environment for Dynamical Model Development, Reproducibility, and Reuse

Sauro, H. M.; Medley, K.; Choi, K.; Konig, M.; Smith, L.; Hellerstein, J.; Sealfon, S.; Gu, S.

10.1101/239004 — systems biology — Posted on 2017-12-23

279 Comparative analysis of genetic diversity and differentiation of cauliflower (Brassica oleracea var. botrytis) accessions from two ex situ genebanks

Yousef, E.; Mueller, T.; Boerner, A.; Schmid, K. J.

10.1101/238840 — plant biology — Posted on 2017-12-23

280 Left-Lateralized Contributions of Saccades to Cortical Activity during a One-Back Word Recognition Task

Chang, Y.-C. C.; Khan, S.; Taulu, S.; Kuperberg, G. R.; Brown, E. N.; Hamalainen, M. S.; Temereanca, S.

10.1101/211177 — neuroscience — Posted on 2017-12-23

281 Entrainment of theta, not alpha, oscillations is predictive of the brightness enhancement of a flickering stimulus

Bertrand, J. K.; Wispinski, N. J.; Mathewson, K. E.; Chapman, C. S.

10.1101/239061 — neuroscience — Posted on 2017-12-23

282 Discovery and characterization of coding and non-coding driver mutations in more than 2,500 whole cancer genomes

Rheinbay, E.; Nielsen, M. M.; Abascal, F.; Tiao, G.; Hornshoj, H.; Hess, J. M.; Pedersen, R. I. I.; Feuerbach, L.; Sabarinathan, R.; Madsen, H. T.; KIM, J.; Mularoni, L.; Shuai, S.; Lanzos Camaioni, A. A.; Herrmann, C.; Maruvka, Y. E.; Shen, C.; Amin, S. B.; Bertl, J.; Dhingra, P.; Diamanti, K.; Gonzalez-Perez, A.; Guo, Q.; Haradhvala, N. J.; Isaev, K.; Juul, M.; Komorowski, J.; kumar, s.; Lee, D.; Lochovsky, L.; Liu, E. M. M.; Pich, O.; tamborero, d.; Umer, H. M.; Uusküla-Reimand, L.; Wadelius, C.; Wadi, L.; Zhang, J.; Boroevich, K. A.; Carlevaro-Fita, J.; Chakravarty, D.; Chan, C. W.

10.1101/237313 — genomics — Posted on 2017-12-23

283 Learning and Mapping Lyme Disease Patient Trajectories from Electronic Medical Data for Stratification of Disease Risk and Therapeutic Response

Ichikawa, O.; Glicksberg, B. S.; Kidd, B. A.; Li, L.; Dudley, J. T.

10.1101/239020 — bioinformatics — Posted on 2017-12-23

284 Alignment-Free Approaches Predict Novel Nuclear Mitochondrial Segments (NUMTs) in the Human Genome

Li, W.; Freudenberg, J.

10.1101/239053 — bioinformatics — Posted on 2017-12-23

285 Emergence of reward expectation signals in identified dopamine neurons

Coddington, L. T.; Dudman, J. T.

10.1101/238881 — neuroscience — Posted on 2017-12-22

286 Macrophage resilience and control of intracellular bacteria requires sst1-dependent integration of c-Myc, stress response and type I IFN pathways

Bhattacharya, B.; Chatterjee, S.; Berland, R.; Pichugin, A.; Ivanov, A.; Connor, J. H.; Yan, B.-S.; Kobzik, L.; Kramnik, I.

10.1101/238873 — immunology — Posted on 2017-12-22

287 The bovine alveolar macrophage DNA methylome is resilient to infection with Mycobacterium bovis

O'Doherty, A. M.; Rue-Albrecht, K.; Magee, D. A.; Ahting, S.; Irwin, R. E.; Hall, T. J.; Browne, J. A.; Nalpas, N. C.; Walsh, C.; Gordon, S.; Wojewodzic, M. W.; MacHugh, D. E.

10.1101/238816 — genomics — Posted on 2017-12-22

288 Experimental Evolution Across Different Thermal Regimes Yields Genetic Divergence in Recombination Fraction But No Divergence in Temperature-Associated Plastic Recombination

Kohl, K. P.; Singh, N.

10.1101/238931 — evolutionary biology — Posted on 2017-12-22

289 Hybrid correction of highly noisy Oxford Nanoporelong reads using a variable-order de Bruijn graph

Morisse, P.; Lecroq, T.; Lefebvre, A.

10.1101/238808 — bioinformatics — Posted on 2017-12-22

290 Handling Multiplicity in Neuroimaging through Bayesian Lenses with Hierarchical Modeling

Chen, G.; Xiao, Y.; Taylor, P. A.; Riggins, T.; Geng, F.; Redcay, E.; Cox, R. W.

10.1101/238998 — neuroscience — Posted on 2017-12-22

291 Rap2 and TNIK control Plexin-dependent synaptic tiling in C. elegans

Chen, X.; Shibata, A. C.; Weilinger, N. L.; Hendi, A.; Kurashina, M.; Fortes, E.; MacVicar, B.; Murakoshi, H.; Mizumoto, K.

10.1101/238352 — neuroscience — Posted on 2017-12-22

292 Host adaptation mediated by intergenic evolution in a bacterial pathogen

Khademi, H.; Jelsbak, L.

10.1101/236000 — microbiology — Posted on 2017-12-22

293 Pan-cancer characterisation of microRNA with hallmarks of cancer reveals role of microRNA-mediated downregulation of tumour suppressor genes

Dhawan, A.; Scott, J. G.; Harris, A. L.; Buffa, F. M.

10.1101/238675 — genomics — Posted on 2017-12-22

294 Wolbachia Infection Associated with Increased Recombination in Drosophila

Singh, N.

10.1101/238949 — genetics — Posted on 2017-12-22

295 Multiplexed imaging of high density libraries of RNAs with MERFISH and expansion microscopy

Wang, G.; Moffitt, J. R.; Zhuang, X.

10.1101/238899 — cell biology — Posted on 2017-12-22

296 The PTPRT pseudo-phosphatase domain is a denitrase

Zhao, Y.; Zhao, S.; Hao, Y.; Wang, B.; Zhang, P.; Feng, X.; Chen, Y.; Song, J.; Mieyal, J.; Markowitz, S.; Ewing, R.; Conlon, R.; Miyagi, M.; Wang, Z.

10.1101/238980 — cancer biology — Posted on 2017-12-22

297 Transcriptome dynamics describe and predict state transition from health to leukemia

Rockne, R. C.; Branciamore, S.; Qi, J.; Cook, G. J.; Hua, W.-K.; Carnahan, E.; Marom, A.; Wu, H.; Maestrini, D.; Wu, X.; Guo, C.; O'Meally, D.; Yuan, Y.-C.; Liu, Z.; Carlesso, N.; Wang, L. D.; Forman, S.; Kuo, Y.-H.; Marcucci, G.

10.1101/238923 — cancer biology — Posted on 2017-12-22

298 Female grant applicants are equally successful when peer reviewers assess the science, but not when they assess the scientist

Witteman, H. O.; Hendricks, M.; Straus, S.; Tannenbaum, C.

10.1101/232868 — scientific communication and education — Posted on 2017-12-22

299 The Role of Left Dorsolateral Prefrontal Cortex in Language Processing

Klaus, J.; Schutter, D. J. L. G.

10.1101/230557 — neuroscience — Posted on 2017-12-22

300 Ultrasound Produces Extensive Brain Activation via a Cochlear Pathway

Guo, H.; Hamilton, M.; Offutt, S. J.; Gloeckner, C. D.; Li, T.; Kim, Y.; Legon, W.; Alford, J. K.; Lim, H. H.

10.1101/233189 — neuroscience — Posted on 2017-12-22

301 Activation Of Piezo1 But Not Nav1.2 Channels By Ultrasound at 43 MHz

Prieto, M. L.; Firouzi, K.; Khuri-Yakub, B. T.; Maduke, M.

10.1101/136994 — neuroscience — Posted on 2017-12-22

302 Unbiased classification of mosquito blood cells by single-cell genomics and high-content imaging

Severo, M. S.; Landry, J. J. M.; Lindquist, R. L.; Goosmann, C.; Brinkmann, V.; Collier, P.; Hauser, A. E.; Benes, V.; Henriksson, J.; Teichmann, S. A.; Levashina, E. A.

10.1101/234492 — immunology — Posted on 2017-12-22

303 In toto live imaging in scuttle fly Megaselia abdita reveals transitions towards a novel extraembryonic architecture.

Caroti, F.; Gonzalez Avalos, E.; Gonzalez Avalos, P.; Kromm, D.; Noeske, V.; Wosch, M.; Schütz, L.; Hufnagel, L.; Lemke, S.

10.1101/236364 — evolutionary biology — Posted on 2017-12-22

304 High throughput single cell RNA-seq of developing mouse kidney and human kidney organoids reveals a roadmap for recreating the kidney

Combes, A. N.; Phipson, B.; Zappia, L.; Lawlor, K.; Er, P. X.; Oshlack, A.; Little, M.

10.1101/235499 — developmental biology — Posted on 2017-12-22

305 C-type lectin-like receptor 2 (CLEC-2)-dependent DC migration is controlled by tetraspanin CD37

de Winde, C. M.; Matthews, A. L.; van Deventer, S.; van der Schaaf, A.; Tomlinson, N. D.; Jansen, E.; Eble, J. A.; Nieswandt, B.; McGettrick, H. M.; Figdor, C. G.; Acton, S. E.; Tomlinson, M. G.; van Spriel, A. B.

10.1101/227918 — cell biology — Posted on 2017-12-22

306 A CRISPR screening approach for identifying novel autophagy-related factors and cytoplasm-to-lysosome trafficking routes

Shoemaker, C. J.; Huang, T. Q.; Weir, N. R.; Polyakov, N.; Denic, V.

10.1101/229732 — cell biology — Posted on 2017-12-22

307 ECM cross-linking regulates invadopodia dynamics

Esmaeili Pourfarhangi, K.; Bergman, A.; Gligorijevic, B.

10.1101/198580 — cancer biology — Posted on 2017-12-22

308 The Mouse Cortical Interareal Network Reveals Well Defined Connectivity Profiles and an Ultra Dense Cortical Graph

Gamanut, R.; Kennedy, H.; Toroczkai, Z.; Van Essen, D.; Knoblauch, K.; Burkhalter, A.

10.1101/156976 — neuroscience — Posted on 2017-12-22

309 Anterior cingulate cortex connectivity is associated with suppression of behavior in a rat model of chronic pain

Morris, L. S.; Sprenger, C.; Koda, K.; de la Mora, D. M.; Yamada, T.; Mano, H.; Kashiwagi, Y.; Yoshioka, Y.; Morioka, Y.; Seymour, B.

10.1101/225482 — neuroscience — Posted on 2017-12-22

310 Serotonin 5-HT1A receptor binding and self-transcendence in healthy control subjects - a replication study using Bayesian hypothesis testing

Griffioen, G.; Matheson, G. J.; Cervenka, S.; Farde, L.; Borg, J.

10.1101/226092 — neuroscience — Posted on 2017-12-22

311 Theoretical foundation of the RelTime method for estimating divergence times from variable evolutionary rates

Tamura, K.; Tao, Q.; Kumar, S.

10.1101/180182 — evolutionary biology — Posted on 2017-12-22

312 Conflict between heterozygote advantage and hybrid incompatibility in haplodiploids (and sex chromosomes)

Ghenu, A.-H.; Blanckaert, A.; Butlin, R. K.; Kulmuni, J.; Bank, C.

10.1101/196469 — evolutionary biology — Posted on 2017-12-22

313 Fibroblast Growth Factor 2 lethally sensitizes cancer cells to stress-targeted therapeutic inhibitors

Dias, M. H.; Fonseca, C. S.; Zeidler, J. D.; Albuquerque, L. L.; da Silva, M. S.; Cararo-Lopes, E.; Reis, M. S.; Noel, V.; Prior, I. A.; Armelin, H. A.

10.1101/227496 — cancer biology — Posted on 2017-12-22

314 Necklace: combining reference and assembled transcriptomes for more comprehensive RNA-Seq analysis

Davidson, N. M.; Oshlack, A.

10.1101/200287 — bioinformatics — Posted on 2017-12-22

315 Comprehensive analysis of mobile genetic elements in the gut microbiome reveals phylum-level niche-adaptive gene pools

Jiang, X.; Hall, A. B.; Xavier, R. J.; Alm, E. J.

10.1101/214213 — bioinformatics — Posted on 2017-12-22

316 RADpainter and fineRADstructure: population inference from RADseq data

Malinsky, M.; Trucchi, E.; Lawson, D.; Falush, D.

10.1101/057711 — evolutionary biology — Posted on 2017-12-22

317 Inferring the role of habitat dynamics in driving diversification: evidence for a species pump in Lake Tanganyika cichlids

Janzen, T.; Etienne, R.

10.1101/085431 — evolutionary biology — Posted on 2017-12-22

318 Analysis of RDR1/RDR2/RDR6-independent small RNAs in Arabidopsis thaliana improves MIRNA annotations and reveals novel siRNA loci

Polydore, S.; Axtell, M.

10.1101/238691 — plant biology — Posted on 2017-12-22

319 Cell-type specific parallel circuits in the bed nucleus of the stria terminalis and the central nucleus of the amygdala of the mouse

Ye, J.; Veinante, P.

10.1101/238493 — neuroscience — Posted on 2017-12-22

320 Sparse ordinal logistic regression and its application to brain decoding

Satake, E.; Majima, K.; Aoki, S.; Kamitani, Y.

10.1101/238758 — neuroscience — Posted on 2017-12-22

321 Aberrant cerebellar-default-mode functional connectivity underlying auditory verbal hallucinations in schizophrenia revealed by multi-voxel pattern analysis of resting-state functional connectivity MRI data

Itahashi, T.; Mimura, M.; Hasegawa, S.; Tani, M.; Kato, N.; Hashimoto, R.-i.

10.1101/238519 — neuroscience — Posted on 2017-12-22

322 Stimulus content shapes cortical response statistics

Banyai, M.; Lazar, A.; Klein, L.; Klon-Lipok, J.; Singer, W.; Orban, G.

10.1101/238774 — neuroscience — Posted on 2017-12-22

323 CosMIC: A Consistent Metric for Spike Inference from Calcium Imaging

Reynolds, S.; Schultz, S. R.; Dragotti, P. L.

10.1101/238592 — neuroscience — Posted on 2017-12-22

324 Phenotype loss is associated with widespread divergence of the gene regulatory landscape in evolution

Roscito, J. G.; Sameith, K.; Parra, G.; Langer, B.; Petzold, A.; Rodrigues, M. T.; Hiller, M.

10.1101/238634 — genomics — Posted on 2017-12-22

325 Correcting values of DNA sequence similarity for errors in sequencing

Hackmann, T. J.

10.1101/237990 — genomics — Posted on 2017-12-22

326 A simple spatially explicit neutral model explains range size distribution of reef fishes

Alzate, A.; Janzen, T.; Bonte, D.; Rosindell, J.; Etienne, R.

10.1101/238600 — ecology — Posted on 2017-12-22

327 CYRI1-mediated inhibition of RAC1 signalling restricts Salmonella Typhimurium infection

Yuki, K. E.; Marei, H.; Fiskin, E.; Eva, M. M.; Gopal, A. A.; Schwartzentruber, J. A.; Majewski, J.; Cellier, M.; Mandl, J. N.; Vidal, S. M.; Malo, D.; Dikic, I.

10.1101/238733 — cell biology — Posted on 2017-12-22

328 DeepSimulator: a deep simulator for Nanopore sequencing

Li, Y.; Han, R.; Bi, C.; Li, M.; Wang, S.; Gao, X.

10.1101/238683 — bioinformatics — Posted on 2017-12-22

329 OmicsNet: Integration of Multi-Omics Data using Path Analysis in Multilayer Networks

Akhmedov, M.; Arribas, A.; Montemanni, R.; Bertoni, F.; Kwee, I.

10.1101/238766 — bioinformatics — Posted on 2017-12-22

330 Protein Interaction Screen on Peptide Matrix (PRISMA) reveals interaction footprints and the PTM-dependent interactome of intrinsically disordered C/EBPβ

Dittmar, G.; Perez-Hernandez, D.; Kowenz-Leutz, E.; Kirchner, M.; Kahlert, G.; Wesolowski, R.; Baum, K.; Knoblich, M.; Muller, A.; Wolf, J.; Reimer, U.; Leutz, A.

10.1101/238709 — biochemistry — Posted on 2017-12-22

331 Unfolding of a noise-invariant neural representation of attended speech

Fiedler, L.; Woestmann, M.; Herbst, S. K.; Obleser, J.

10.1101/238642 — neuroscience — Posted on 2017-12-22

332 Transcription-dependent spreading of canonical yeast GATA factor across the body of highly expressed genes

Ronsmans, A.; Wery, M.; Gautier, C.; Descrimes, M.; Dubois, E.; Morillon, A.; Georis, I.

10.1101/238550 — genomics — Posted on 2017-12-22

333 Modulatory upregulation of an insulin peptide gene by different pathogens in C. elegans

Lee, S.-H.; Omi, S.; Thakur, N.; Taffoni, C.; Belougne, J.; Engelmann, I.; Ewbank, J. J.; Pujol, N.

10.1101/238568 — genetics — Posted on 2017-12-22

334 Breast cancer incidence as a function of the number of previous mammograms: analysis of the NHS screening programme

Corcos, D.

10.1101/238527 — epidemiology — Posted on 2017-12-22

335 Trends, geographic variation, and factors associated with prescribing of gluten-free foods in English primary care: a cross sectional study

Walker, A.; Curtis, H. J.; Bacon, S.; Croker, R.; Goldacre, B.

10.1101/211052 — epidemiology — Posted on 2017-12-22

336 Small-scale field testing of Alpha-cypermethrin water-dispersible granules in comparison with the recommended wettable powder formulation for indoor residual spraying against malaria vectors in Benin

Moiroux, N.; Djenontin, A.; Zogo, B.; Boureima, A.; Sidick, I.; Pigeon, O.; Pennetier, C.

10.1101/204651 — epidemiology — Posted on 2017-12-22

337 Catching up to a fast-moving target: Evaluation of a health system strengthening intervention in rural Rwanda 2005-2010 using data from repeated cross-sectional surveys

Thomson, D.; Amoroso, C.; Atwood, S.; Bonds, M. H.; Rwabukwisi, F. C.; Drobac, P.; Finnegan, K. E.; Farmer, D. B.; Farmer, P. E.; Habinshuti, A.; Hirschhorn, L. R.; Manzi, A.; Niyigena, P.; Rich, M. L.; Stulac, S.; Murray, M.; Binagwaho, A.

10.1101/238543 — epidemiology — Posted on 2017-12-22

338 Effect of antimicrobial treatment for acute otitis media on carriage of Streptococcus pneumoniae with reduced susceptibility to penicillin in a randomized, double-blind, placebo-controlled trial

Lewnard, J. A.; Tähtinen, P. A.; Laine, M. K.; Lindholm, L.; Jalava, J.; Huovinen, P.; Lipsitch, M.; Ruohola, A.

10.1101/236752 — epidemiology — Posted on 2017-12-22

339 Quantifying biases in test-negative studies of vaccine effectiveness

Lewnard, J. A.; Tedijanto, C. A.; Cowling, B. J.; Lipsitch, M.

10.1101/237503 — epidemiology — Posted on 2017-12-22

340 Wall teichoic acid is a pathogen-associated molecular pattern of Staphylococcus aureus that is recognized by langerin (CD207) on skin Langerhans cells

van Dalen, R.; Rumpret, M.; Fuchsberger, F. F.; van Teijlingen, N. H.; Hanske, J.; Rademacher, C.; Geijtenbeek, T. B. H.; Van Strijp, J. A. G.; Weidenmaier, C.; Peschel, A.; van Sorge, N. M.

10.1101/238469 — microbiology — Posted on 2017-12-22

341 PolNet Analysis: a software tool for the quantification of network-level endothelial cell polarity and blood flow during vascular remodelling

Bernabeu, M. O.; Jones, M. L.; Nash, R. W.; Pezzarossa, A.; Coveney, P. V.; Gerhardt, H.; Franco, C. A.

10.1101/237602 — developmental biology — Posted on 2017-12-22

342 Hepatic NF-kB-inducing Kinase (NIK) Suppresses Liver Regeneration in Chronic Liver Disease

Xiong, Y.; Torsoni, A. S.; Wu, F.; Shen, H.; Liu, Y.; Canet, M. J.; Shah, Y. M.; Omary, B. M.; Liu, Y.; Rui, L.

10.1101/238717 — cell biology — Posted on 2017-12-22

343 A hypothesis-driven approach to assessing significance of differences in RNA expression levels among specific groups of genes

He, M.; Liu, P.; Lawrence-Dill, C. J.

10.1101/136143 — bioinformatics — Posted on 2017-12-22

344 Transcriptional evaluation of the developmental accuracy, reproducibility and robustness of kidney organoids derived from human pluripotent stem cells

Phipson, B.; Er, P. X.; Hale, L.; Yen, D.; Lawlor, K.; Takasato, M.; Sun, J.; Wolvetang, E.; Oshlack, A.; Little, M.

10.1101/238428 — bioinformatics — Posted on 2017-12-22

345 Physical properties characterization of Natural Protein Fibre Peacock Feather Barbs

Das, S.; Jose, S.; Pandit, P.

10.1101/238626 — zoology — Posted on 2017-12-22

346 Algorithms for Search for Common Ancestors

Gitik, R.

10.1101/238188 — systems biology — Posted on 2017-12-22

347 Fluorescent reporter lines for auxin and cytokinin signalling in barley (Hordeum vulgare)

Kirschner, G. K.; Stahl, Y.; Imani, J.; von Korff, M.; Simon, R.

10.1101/236018 — plant biology — Posted on 2017-12-21

348 A model of protein interactions for regulating plant stem cells

Gruel, J.; Deichmann, J.; Landrein, B.; Hitchcock, T.; Jönsson, H.

10.1101/237933 — plant biology — Posted on 2017-12-21

349 Uterine progesterone signaling is a target for metformin therapy in polycystic ovary syndrome

Hu, M.; Zhang, Y.; Feng, J.; Xu, X.; Zhang, J.; Zhao, W.; Guo, X.; Li, J.; Vestin, E.; Cui, P.; Li, X.; Wu, X.-k.; Brannstrom, M.; Shao, L. R.; Billig, H.

10.1101/238261 — physiology — Posted on 2017-12-21

350 Functional triplet motifs underlie accurate predictions of single-trial responses in populations of tuned and untuned V1 neurons

Dechery, J. B.; MacLean, J. N.

10.1101/238345 — neuroscience — Posted on 2017-12-21

351 Lhx2 regulates temporal changes in chromatin accessibility and transcription factor binding in retinal progenitor cells.

Blackshaw, S.; Zibetti, C.; Liu, S.; Wan, J.; Qian, J.

10.1101/238279 — neuroscience — Posted on 2017-12-21

352 Real-time visual interactions across the boundary of awareness

Meital-Kfir, N.; Sagi, D.

10.1101/237917 — neuroscience — Posted on 2017-12-21

353 Partial Correlation Analysis Reveals Abnormal Retinotopically Organized Functional Connectivity of Visual Areas in Amblyopia

Mendola, J.; Lam, J.; Rosenstein, M.; Lewis, L. B.; Shmuel, A.

10.1101/237362 — neuroscience — Posted on 2017-12-21

354 RANbodies: reporter-nanobody fusions as versatile, small, sensitive immunohistochemical reagents

Sanes, J.; Yamagata, M.

10.1101/238162 — neuroscience — Posted on 2017-12-21

355 Individual connectomes are unique and stable in the developing brain from adolescence to young adulthood.

Horien, C.; Shen, X.; Scheinost, D.; Constable, R. T.

10.1101/238113 — neuroscience — Posted on 2017-12-22

356 Impaired expected value computations coupled with overreliance on prediction error learning in schizophrenia

Hernaus, D.; Gold, J. M.; Waltz, J. A.; Frank, M. J.

10.1101/238089 — neuroscience — Posted on 2017-12-22

357 Correct laminar positioning in the neocortex influences proper dendritic and synaptic development

Martineau, F. S.; Sahu, S.; Plantier, V.; Buhler, E.; Schaller, F.; Fournier, L.; Chazal, G.; Kawasaki, H.; Represa, A.; Watrin, F.; Manent, J.-B.

10.1101/229948 — neuroscience — Posted on 2017-12-22

358 Does force-field adaptation induce after-effects on space representation?

Michel, C.; Bonnetain, L.; White, O.

10.1101/238246 — neuroscience — Posted on 2017-12-22

359 Transcriptional responses of Escherichia coli during recovery from inorganic or organic mercury exposure

LaVoie, S. P.; Summers, A. O.

10.1101/161646 — microbiology — Posted on 2017-12-21

360 The essential genome of Escherichia coli K-12

Goodall, E.; Robinson, A.; Johnston, I.; Jabbari, S.; Turner, K.; Cunningham, A.; Lund, P.; Cole, J.; Henderson, I.

10.1101/237842 — microbiology — Posted on 2017-12-21

361 Hydrogen production by Sulfurospirillum spp. enables syntrophic interactions of Epsilonproteobacteria

Kruse, S.; Goris, T.; Westermann, M.; Adrian, L.; Diekert, G.

10.1101/238212 — microbiology — Posted on 2017-12-22

362 Cell "hashing" with barcoded antibodies enables multiplexing and doublet detection for single cell genomics

Stoeckius, M.; Zheng, S.; Houck-Loomis, B.; Hao, S.; Yeung, B.; Smibert, P.; Satija, R.

10.1101/237693 — genomics — Posted on 2017-12-21

363 Genome-Epigenome Interactions Associated with Myalgic Encephalomyelitis/Chronic Fatigue Syndrome

Herrera, S.; de Vega, W.; Ashbrook, D.; Vernon, S.; McGowan, P.

10.1101/237958 — genomics — Posted on 2017-12-22

364 Tandem Duplicate Genes in Maize are Abundant and Date to Two Distinct Periods of Time

Kono, T. J. Y.; Brohammer, A. B.; McGaugh, S. E.; Hirsch, C.

10.1101/238121 — genomics — Posted on 2017-12-22

365 Comparative analysis of neutrophil and monocyte epigenomes

Rico, D.; Martens, J. H.; Downes, K.; Carrillo-de-Santa-Pau, E.; Pancaldi, V.; Breschi, A.; Richardson, D.; Heath, S.; Saeed, S.; Frontini, M.; Chen, L.; Watt, S.; Muller, F.; Clarke, L.; Kerstens, H. H.; Wilder, S. P.; Palumbo, E.; Djebali, S.; Rainieri, E.; Merkel, A.; Esteve-Codina, A.; Sultan, M.; van Bommel, A.; Gut, M.; Yaspo, M.-L.; Rubio, M.; Fernandez, J. M.; Attwood, A.; de la Torre, V.; Royo, R.; Fragkogianni, S.; Gelpi, J. L.; Torrents, D.; Iotchkova, V.; Logie, C.; Aghajanirefah, A.; Singh, A. A.; Janssen-Megens, E. M.; Berentsen, K.; Erber, W.; Rendon, A.; Kostadima, M.; Loos, R.

10.1101/237784 — genomics — Posted on 2017-12-22

366 The genomic false shuffle: epigenetic maintenance of topological domains in the rearranged gibbon genome

Lazar, N. H.; Nevonen, K. A.; O'Connell, B.; Green, R. E.; Meyer, T. J.; Okhovat, M.; Carbone, L.

10.1101/238360 — genomics — Posted on 2017-12-22

367 Shu complex SWS1-SWSAP1 is required for mouse meiotic recombination in concert with the BRCA2 C terminus

Abreu, C. M.; Prakash, R.; Romanienko, P. J.; Roig, I.; Keeney, S.; Jasin, M.

10.1101/238196 — genetics — Posted on 2017-12-22

368 Tri-methylation of Histone H3 Lysine 4 Facilitates Gene Expression in Ageing Cells

Cruz, C.; Della Rosa, M.; Krueger, C.; Gao, Q.; Field, L.; Houseley, J.

10.1101/238048 — genetics — Posted on 2017-12-22

369 A simple test identifies selection on complex traits in breeding and experimentally-evolved populations

Beissinger, T. M.; Kruppa, J.; Cavero, D.; Ha, N.-T.; Erbe, M.; Simianer, H.

10.1101/238295 — evolutionary biology — Posted on 2017-12-21

370 Neural Changes Underlying Rapid Fly Song Evolution

Ding, Y.; Lillvis, J. L.; Cande, J.; Berman, G. J.; Arthur, B. J.; Xu, M.; Dickson, B. J.; Stern, D. L.

10.1101/238147 — evolutionary biology — Posted on 2017-12-21

371 Reconstructing the evolution of metabolism in budding yeasts

Correia, K.; Yu, S. M.; Mahadevan, R.

10.1101/237974 — evolutionary biology — Posted on 2017-12-22

372 Inferring Phylogenetic Networks Using PhyloNet

Wen, D.; Yun, Y.; Zhu, J.; Nakhleh, L.

10.1101/238071 — evolutionary biology — Posted on 2017-12-22

373 Quantifying long-term predictability in microbial plankton dynamics

Giner, C. R.; Balague, V.; Krabberod, A. K.; Ferrera, I.; Rene, A.; Garces, E.; Gasol, J. M.; Logares, R.; Massana, R.

10.1101/237743 — ecology — Posted on 2017-12-21

374 Diversification, sympatry, and the emergence of mega-diverse tropical assemblages

Socolar, J. B.; Lees, A. C.

10.1101/238329 — ecology — Posted on 2017-12-21

375 Going through the motions: incorporating movement analyses into disease research

Dougherty, E. R.; Seidel, D. P.; Carlson, C. J.; Speigel, O.; Getz, W. M.

10.1101/237891 — ecology — Posted on 2017-12-22

376 Variations in δ13C of different plant organs: implications for post-photosynthetic fractionation

Zhang, Y.; Yu, X.; Chen, L.; Jia, G.

10.1101/238477 — ecology — Posted on 2017-12-22

377 Three dimensional cross-modal image inference: label-free methods for subcellular structure prediction

Ounkomol, C.; Fernandes, D. A.; Seshamani, S.; Maleckar, M. M.; Collman, F.; Johnson, G. R.

10.1101/216606 — cell biology — Posted on 2017-12-21

378 Genome Architecture Leads a Bifurcation in Cell Identity

Liu, S.; Chen, H.; Ronquist, S.; Seaman, L.; Ceglia, N.; Meixner, W.; Muir, L. A.; Chen, P.-Y.; Higgins, G.; Baldi, P.; Smale, S.; Hero, A.; Rajapakse, I.

10.1101/151555 — cell biology — Posted on 2017-12-21

379 Phospho-signal flow from a pole-localized microdomain spatially patterns transcription factor activity

Lasker, K.; von Diezmann, A.; Ahrens, D. G.; Mann, T. H.; Moerner, W. E.; Shapiro, L.

10.1101/220293 — cell biology — Posted on 2017-12-21

380 Building a 3D Integrated Cell

Johnson, G. R.; Donovan-Maiye, R. M.; Maleckar, M. M.

10.1101/238378 — cell biology — Posted on 2017-12-21

381 The mechanical microenvironment regulates ovarian cancer cell morphology, migration, and spheroid disaggregation

McKenzie, A. J.; Hicks, S. R.; Svec, K. V.; Naughton, H.; Edmunds, Z. L.; Howe, A. K.

10.1101/238311 — cell biology — Posted on 2017-12-21

382 Mathematical models for cell migration with real-time cell cycle dynamics

Vittadello, S. T.; McCue, S.; Gunasingh, G.; Haass, N.; Simpson, M.

10.1101/238303 — cell biology — Posted on 2017-12-21

383 Comprehensive Cell Type Specific Transcriptomics of the Human Kidney

Sivakamasundari, V.; Bolisetty, M.; Sivajothi, S.; Bessonett, S.; Ruan, D.; Robson, P.

10.1101/238063 — cell biology — Posted on 2017-12-22

384 Tension-dependent regulation of mammalian Hippo signaling through LIMD1

Ibar, C.; Kirichenko, E.; Keepers, B.; Enners, E.; Fleisch, K.; Irvine, K.

10.1101/238394 — cell biology — Posted on 2017-12-22

385 Challenges in Using ctDNA to Achieve Early Detection of Cancer

Haque, I. S.; Elemento, O.

10.1101/237578 — cancer biology — Posted on 2017-12-21

386 Somatic Mutations Predict Acute Myeloid Leukemia Years Before Diagnosis

Desai, P.; Mencia-Trinchant, N.; Savenkov, O.; Simon, M. S.; Cheang, G.; Lee, S.; Samuel, M.; Ritchie, E. K.; Guzman, M. L.; Ballman, K. V.; Roboz, G. J.; Hassane, D. C.

10.1101/237941 — cancer biology — Posted on 2017-12-21

387 HNF1A is a Novel Oncogene and Central Regulator of Pancreatic Cancer Stem Cells

Abel, E.; Goto, M.; Magnuson, B.; Abraham, S.; Ramanathan, N.; Hotaling, E.; Alaniz, A. A.; Kumar-Sinha, C.; Dziubinski, M. L.; Urs, S.; Wang, L.; Shi, J.; Waghray, M.; Ljungman, M.; Crawford, H. C.; Simeone, D. M.

10.1101/238097 — cancer biology — Posted on 2017-12-22

388 Study on Linear Combination of Long Memory Processes Corrupted by Additive Noises for fMRI Time Series Analysis

You, W.; Limperopoulos, C.

10.1101/210518 — biophysics — Posted on 2017-12-21

389 Sequence determinants of protein phase behavior from a coarse-grained model

Dignon, G. L.; Zheng, W.; Kim, Y. C.; Best, R. B.; Mittal, J.

10.1101/238170 — biophysics — Posted on 2017-12-21

390 Millieu-Initiated Inversion of he Aqueous Polyproline II/Beta Propensity of the Alanine Tripeptide: Energetics Origin of the Onset of Amyloid Formation

Krimm, S.; Mirkin, N. G.

10.1101/238006 — biophysics — Posted on 2017-12-22

391 A jump distance based parameter inference scheme for particulate trajectories in biological settings

Menssen, R.; Mani, M.

10.1101/238238 — biophysics — Posted on 2017-12-22

392 Content-Aware Image Restoration: Pushing the Limits of Fluorescence Microscopy

Weigert, M.; Schmidt, U.; Boothe, T.; Müller, A.; Dibrov, A.; Jain, A.; Wilhelm, B.; Schmidt, D.; Broaddus, C.; Culley, S.; Rocha-Martins, M.; Segovia-Miranda, F.; Norden, C.; Henriques, R.; Zerial, M.; Solimena, M.; Rink, J.; Tomancak, P.; Royer, L.; Jug, F.; Myers, E. W.

10.1101/236463 — bioinformatics — Posted on 2017-12-21

393 Visualizing genome synteny with xmatchview

Warren, R. L.

10.1101/238220 — bioinformatics — Posted on 2017-12-22

394 Identification and analysis of mobile genetic elements in Gibbon genome

Rawal, K.; Jagannadham, J.; Kubba, C.; Sharma, T.

10.1101/237685 — bioinformatics — Posted on 2017-12-22

395 Sequential Super-Resolution Imaging using DNA Strand Displacement

Lidke, D. S.; Martin, C.; Farzam, F.; Edwards, J. S.; Pallikkuth, S.; Lakin, M. R.; Lidke, K. A.

10.1101/237560 — bioengineering — Posted on 2017-12-21

396 Bioty: A cloud-based development toolkit for programming experiments and interactive applications with living cells

Washington, P.; Samuel-Gama, K.; Goyal, S.; Riedel-Kruse, I. H.

10.1101/236919 — bioengineering — Posted on 2017-12-21

397 Active site alanine substitutions can convert deubiquitinating enzymes into avid ubiquitin-binding domains

Morrow, M.; Morgan, M.; Clerici, M.; Growkova, K.; Yan, M.; Komander, D.; Simicek, M.; Sixma, T.; Wolberger, C.

10.1101/238154 — biochemistry — Posted on 2017-12-22

398 PhysiCell: an Open Source Physics-Based Cell Simulator for 3-D Multicellular Systems

Ghaffarizadeh, A.; Heiland, R.; Friedman, S. H.; Mumenthaler, S. M.; Macklin, P.

10.1101/088773 — systems biology — Posted on 2017-12-21

399 Enabling Precision Medicine via standard communication of NGS provenance, analysis, and results

Alterovitz, G.; Dean, D. A.; Goble, C.; Crusoe, M. R.; Soiland-Reyes, S.; Bell, A.; Hayes, A.; King, C. H. S.; Taylor, D.; Johanson, E.; Thompson, E. E.; Donaldson, E.; Morizono, H.; Tsang, H. S.; Goecks, J.; Yao, J.; Almeida, J. S.; Krampis, K.; Guo, L.; Walderhaug, M.; Walsh, P.; Kahsay, R.; Gottipati, S.; Bloom, T.; Lai, Y.; Simonyan, V.; Mazumder, R.

10.1101/191783 — scientific communication and education — Posted on 2017-12-21

400 Binge-like Acquisition of α-pyrrolidinopentiophenone (α-PVP) Self-Administration in Female Rats

Javadi-Paydar, M.; Grant, Y.; Vandewater, S. A.; Creehan, K. M.; Nguyen, J. D.; Dickerson, T. J.; Taffe, M. A.

10.1101/191155 — neuroscience — Posted on 2017-12-21

401 Bystro: rapid online variant annotation and natural-language filtering at whole-genome scale

Kotlar, A. V.; Trevino, C. E.; Zwick, M. E.; Cutler, D. J.; Wingo, T. S.

10.1101/146514 — bioinformatics — Posted on 2017-12-21

402 Leveraging multiple transcriptome assembly methods for improved gene structure annotation

Venturini, L.; Caim, S.; Kaithakottil, G.; Mapleson, D. L.; Swarbreck, D.

10.1101/216994 — bioinformatics — Posted on 2017-12-21

403 A comprehensive assessment of inbreeding and laboratory adaptation in Aedes aegypti mosquitoes

Ross, P. A.; Endersby-Harshman, N. M.; Hoffmann, A. A.

10.1101/237776 — evolutionary biology — Posted on 2017-12-21

404 Tetrapods on the EDGE: Overcoming data limitations to identify phylogenetic conservation priorities

Gumbs, R.; Gray, C. L.; Wearn, O. R.; Owen, N. R.

10.1101/232991 — zoology — Posted on 2017-12-21

405 Gaze Behaviour During Sensorimotor Adaptation Parcellates the Explicit and Implicit Contributions to Learning

de Brouwer, A. J.; Albaghdadi, M.; Flanagan, R.; Gallivan, J. P.

10.1101/237651 — neuroscience — Posted on 2017-12-21

406 Measurement of the mapping between intracranial EEG and fMRI recordings in the human brain

Carmichael, D. W.; Vulliemoz, S.; Murta, T.; Chaudhary, U.; Perani, S.; Rodionov, R.; Rosa, M. M.; Friston, K.; Lemieux, L.

10.1101/237198 — neuroscience — Posted on 2017-12-21

407 Data-driven brain-types and their cognitive consequences

Bathelt, J.; Johnson, A.; Zhang, M.; the CALM team, ; Astle, D. E.

10.1101/237859 — neuroscience — Posted on 2017-12-21

408 Uncovering the heterogeneity and temporal complexity of neurodegenerative diseases with Subtype and Stage Inference

Young, A. L.; Marinescu, R.-V. V.; Oxtoby, N. P.; Bocchetta, M.; Yong, K.; Firth, N.; Cash, D. M.; Thomas, D. L.; Dick, K. M.; Cardoso, J.; van Swieten, J.; Borroni, B.; Galimberti, D.; Masellis, M.; Carmela Tartaglia, M.; Rowe, J. B.; Graff, C.; Tagliavini, F.; Frisoni, G.; Laforce, R.; Finger, E.; Medonca, A.; Sorbi, S.; Warren, J. D.; Crutch, S.; Fox, N. C.; Ourselin, S.; Schott, J. M.; Rohrer, J. D.; Alexander, D. C.; Genetic FTD Initiative GENFI, ; Alzheimer's Disease Neuroimaging Initiative,

10.1101/236604 — neuroscience — Posted on 2017-12-21

409 The structure of the influenza A virus genome

Dadonaite, B.; Barilaite, E.; Fodor, E.; Laederach, A.; Bauer, D. L.

10.1101/236620 — microbiology — Posted on 2017-12-21

410 Non-B DNA affects polymerization speed and error rate in sequencers and living cells

Guiblet, W. M. F.; Cremona, M. A.; Cechova, M.; Harris, R. S.; Kejnovska, I.; Kejnovsky, E.; Eckert, K.; Chiaromonte, F.; Makova, K. D.

10.1101/237461 — genomics — Posted on 2017-12-21

411 Genetic structure and sex-biased gene flow in the history of southern African populations

Bajic, V.; Barbieri, C.; Hübner, A.; Güldemann, T.; Naumann, C.; Gerlach, L.; Berthold, F.; Nakagawa, H.; Mpoloka, S. W.; Roewer, L.; Purps, J.; Stoneking, M.; Pakendorf, B.

10.1101/237297 — genetics — Posted on 2017-12-21

412 Osterix functions downstream of anti-Mullerian hormone signaling to regulate Mullerian duct regression

Mullen, R.; Wang, Y.; Liu, B.; Moore, E. L.; Behringer, R. R.

10.1101/237529 — developmental biology — Posted on 2017-12-21

413 The role of conformational entropy in the determination of structural-kinetic relationships for helix-coil transitions

Rudzinski, J. F.; Bereau, T.

10.1101/237875 — biophysics — Posted on 2017-12-21

414 Decomposing the Apoptosis Pathway Into Biologically Interpretable Principal Components

Wang, M.; Kornblau, S. M.; Coombes, K. R.

10.1101/237883 — bioinformatics — Posted on 2017-12-21

415 Dr.Paso: Drug response prediction and analysis system for oncology research

Azuaje, F.; Kaoma, T.; Jeanty, C.; Nazarov, P. V.; Muller, A.; Kim, S.-Y.; Golebiewska, A.; Dittmar, G.; Niclou, S. P.

10.1101/237727 — bioinformatics — Posted on 2017-12-21

416 Peripheral infrastructure vectors and an extended set of plant parts for the modular cloning system

Gantner, J.; Ilse, T.; Ordon, J.; Kretschmer, C.; Gruetzner, R.; Loefke, C.; Dagdas, Y.; Buerstenbinder, K.; Marillonnet, S.; Stuttmann, J.

10.1101/237768 — plant biology — Posted on 2017-12-21

417 The co-regulatory interaction of transpiration and water potential: Implications for stomatal conductance models and height growth in trees

Beyer, R.; Pretzsch, H.; Cournede, P.-H.

10.1101/237826 — plant biology — Posted on 2017-12-21

418 Engineering resistance against Tomato yellow leaf curl virus via the CRISPR/Cas9 system in tomato

Mahfouz, M.; Tashkandi, M.; ALI, Z.; Aljedaani, F.; Shami, A.

10.1101/237735 — plant biology — Posted on 2017-12-21

419 Firefly genomes illuminate the origin and evolution of bioluminescence

Fallon, T. R.; Lower, S. E.; Chang, C.-H.; Bessho-Uehara, M.; Martin, G. J.; Bewick, A. J.; Behringer, M.; Debat, H. J.; Wong, I.; Day, J. C.; Suvorov, A.; Silva, C. J.; Hall, D. W.; Schmitz, R. J.; Nelson, D. R.; Lewis, S.; Shigenobu, S.; Bybee, S. M.; Larracuente, A. M.; Oba, Y.; Weng, J.-K.

10.1101/237586 — genomics — Posted on 2017-12-21

420 An analysis of EEG networks and their correlation with cognitive impairment in preschool children with epilepsy

Kinney-Lang, E.; Yoong, M.; Hunter, M.; Tallur, K. K.; Shetty, J.; McLellan, A.; Chin, R. F.; Escudero, J.

10.1101/237172 — neuroscience — Posted on 2017-12-21

421 Xenomai-based multiple-process system, for real-time data acquisition and graphical display control

Hadrien, C.; Pouget, P.

10.1101/191973 — neuroscience — Posted on 2017-12-21

422 Characterizing co-expression networks underpinning maize stalk rot virulence in Fusarium verticillioides through computational subnetwork module analyses

Kim, M. S.; Zhang, H.; Yan, H.; Yoon, B.-J.; Shim, W. B.

10.1101/237339 — microbiology — Posted on 2017-12-21

423 Non-biological synthetic spike-in controls and the AMPtk software pipeline improve fungal high throughput amplicon sequencing data

Palmer, J. M.; Jusino, M. A.; Banik, M. T.; Lindner, D. L.

10.1101/213470 — microbiology — Posted on 2017-12-21

424 Comprehensive analysis of Verticillium nonalfalfae in silico secretome uncovers putative effector proteins expressed during hop invasion

Marton, K.; Flajsman, M.; Radisek, S.; Kosmelj, K.; Jakse, J.; Javornik, B.; Berne, S.

10.1101/237255 — microbiology — Posted on 2017-12-21

425 Genome-wide association study implicates CHRNA2 in cannabis use disorder

Demontis, D.; Rajagopal, V. M.; Thorgeirsson, T.; Als, T. D.; Grove, J.; Pallesen, J.; Hjorthoj, C.; Reginsson, G. W.; Tyrfingsson, T.; Runarsdottir, V.; Qvist, P.; Christensen, J. H.; Huckins, L. M.; Stahl, E. A.; Timmermann, A.; Agerbo, E.; Werge, T.; Mors, O.; Mortensen, P. B.; Nordentoft, M.; Daly, M.; Stefansson, H.; Stefansson, K.; Nyegaard, M.; Borglum, A. D.

10.1101/237321 — genomics — Posted on 2017-12-21

426 A single-cell catalogue of regulatory states in the ageing Drosophila brain

Davie, K.; Janssens, J.; Koldere, D.; Pech, U.; Aibar, S.; De Waegeneer, M.; Makhzami, S.; Christiaens, V.; Bravo Gonzalez-Blas, C.; Hulselmans, G.; Spanier, K.; Moerman, T.; Vanspauwen, B.; Lammertyn, J.; Thienpont, B.; Liu, S.; Verstreken, P.; Aerts, S.

10.1101/237420 — genomics — Posted on 2017-12-21

427 Control of meiotic double-strand-break formation by ATM: local and global views

Lukaszewicz, A.; Lange, J.; Keeney, S.; Jasin, M.

10.1101/236984 — genetics — Posted on 2017-12-21

428 Identification of methylation and hydroxymethylation haplotype blocks as distal regulatory elements aids in deconvolution of heterogeneous brain tissues

Ma, Q.; Xu, Z.; Lu, H.; Xu, Z.; Zhou, Y.; Yuan, B.; Ci, W.

10.1101/237024 — genetics — Posted on 2017-12-21

429 First genome-wide analysis of an endangered lichen reveals isolation by distance and strong population structure

Allen, J.; McKenzie, S.; Sleith, R.; Alter, S. E.

10.1101/237164 — evolutionary biology — Posted on 2017-12-21

430 Characterizing the Liquid-liquid Phase Co-existence in Biomembrane: Insights from Local Non-affine Deformation and Topological Rearrangements

Iyer, S. S.; Tripathy, M.; Srivastava, A.

10.1101/231274 — biophysics — Posted on 2017-12-21

431 Robust expression variability testing reveals heterogeneous T cell responses

Eling, N.; Richard, A. C.; Richardson, S.; Marioni, J. C.; Vallejos, C. A.

10.1101/237214 — bioinformatics — Posted on 2017-12-21

432 NanoPack: visualizing and processing long read sequencing data

De Coster, W.; D'Hert, S.; Schultz, D. T.; Cruts, M.; Van Broeckhoven, C.

10.1101/237180 — bioinformatics — Posted on 2017-12-21

433 Gravitropic Movement in Wheat Coleoptile is Regulated by Ultradian Growth Oscillations

Bastien, R.; Guayasamin, O.; Douady, S.; Moulia, B.

10.1101/093146 — plant biology — Posted on 2017-12-21

434 A Parallel Processing Model of Drosophila Olfactory Sensory Neurons and Its Biological Validation

Lazar, A. A. A.; Yeh, C.-H.

10.1101/237669 — neuroscience — Posted on 2017-12-21

435 Cellular diversity in the Drosophila midbrain revealed by single-cell transcriptomics

Croset, V.; Treiber, C. D.; Waddell, S.

10.1101/237818 — neuroscience — Posted on 2017-12-21

436 Computational docking reveals evolutionary conservation of a specific interaction between 15d-Prostaglandin-J2 and eIF4A.

Yun, S. J.; Kim, H.; Lee, S. G.; Jung, S.-H.; Kim, J. H.; Ryu, J. E.; Singh, N. J.; Jeon, J.; Han, J.-K.; Kim, C.-H.; Kim, S.; Kim, K. S.; Jang, S. K.; Kim, W. J.

10.1101/237610 — molecular biology — Posted on 2017-12-21

437 Codon-Dependent Translational Accuracy Controls Protein Quality in Escherichia coli but not in Saccharomyces cerevisiae

Josse, L.; Sampson, C. D. D.; Tuite, M. F.; Howland, K.; von der Haar, T.

10.1101/200006 — molecular biology — Posted on 2017-12-21

438 Division of labor during biofilm matrix production

Dragos, A.; Kiesewalter, H. T.; Martin, M.; Hsu, C.-Y.; Hartmann, R.; Wechsler, T.; Drescher, K.; Stanley-Wall, N.; Kummerli, R.; Kovacs, A. T.

10.1101/237230 — microbiology — Posted on 2017-12-21

439 Discovery and biosynthesis of the antibiotic bicyclomycin in distant bacterial classes

Vior, N. M.; Lacret, R.; Chandra, G.; Dorai-Raj, S.; Trick, M.; Truman, A. W.

10.1101/236828 — microbiology — Posted on 2017-12-21

440 The Phagocyte Oxidase Controls Tolerance to Mycobacterium tuberculosis infection.

Olive, A. J.; Smith, C. M.; Kiritsy, M. C.; Sassetti, C. M.

10.1101/232777 — immunology — Posted on 2017-12-21

441 Comprehensive pathway analyses of schizophrenia risk loci point to dysfunctional postsynaptic signaling

Schijven, D.; Kofink, D.; Tragante, V.; Verkerke, M.; Pulit, S. L.; Kahn, R. S.; Veldink, J. H.; Vinkers, C. H.; Boks, M. P.; Luykx, J. J.

10.1101/117481 — genetics — Posted on 2017-12-21

442 A memory element imposes epigenetic behavior on intrinsically labile RNAi-induced heterochromatin spread.

Greenstein, R. A.; Jones, S. K.; Spivey, E. C.; Rybarski, J. R.; Finkelstein, I.; Al-Sady, B.

10.1101/237479 — genetics — Posted on 2017-12-21

443 Mineral facilitated horizontal gene transfer: A new principle for evolution of life?

Sand, K. K.; Jelavic, S.

10.1101/235531 — evolutionary biology — Posted on 2017-12-21

444 A Testis ER Chaperone Marks Mature Olfactory and Vomeronasal Sensory Neurons

Dalton, R. P.

10.1101/237719 — cell biology — Posted on 2017-12-21

445 Force-Dependent Binding Of Vinculin To α-catenin Regulates Cell-Cell Contacts Stability And Collective Cell Behavior

Seddiki, R.; Sankara Narayana, G. H. N.; Strale, P.-O.; Balcioglu, H. E.; Peyret, G.; Yao, M.; Le, A. P.; Teck, L. C.; Yan, J.; Ladoux, B.; Mege, R.-M.

10.1101/117762 — cell biology — Posted on 2017-12-21

446 Modeling acute myeloid leukemia in a continuum of differentiation states

Cho, H.; Ayers, K.; de Pillis, L.; Kuo, Y.-H.; Park, J.; Radunskaya, A.; Rockne, R. C.

10.1101/237438 — cancer biology — Posted on 2017-12-21

447 Lack of Evidence that Ursodeoxycholic Acid’s Effects on the Gut Microbiome Influence Colorectal Adenoma Risk

Pearson, T.; Caporaso, J. G.; Yellowhair, M.; Bokulich, N. A.; Roe, D. J.; Wertheim, B. C.; Linhart, M.; Martinez, J. A.; Bilagody, C.; Hornstra, H.; Alberts, D. S.; Lance, P.; Thompson, P. A.

10.1101/237495 — cancer biology — Posted on 2017-12-21

448 General sexual desire, but not desire for uncommitted sexual relationships, tracks changes in women’s hormonal status

Jones, B.; Hahn, A.; Fisher, C.; Wang, H.; Kandrik, M.; DeBruine, L.

10.1101/155788 — animal behavior and cognition — Posted on 2017-12-21

449 Structural organization and energy storage in crosslinked actin-assemblies

Ma, R.; Berro, J.

10.1101/237412 — biophysics — Posted on 2017-12-20

450 Sequential Super-Resolution Imaging using DNA Strand Displacement

Lidke, D. S.; Martin, C.; Farzam, F.; Edwards, J. S.; Pallikkuth, S.; Lakin, M. R.; Lidke, K. A.

10.1101/237560 — bioengineering — Posted on 2017-12-20

451 Information Flow in Planar Polarity

Fisher, K. H.; Fletcher, A. G.; Strutt, D. I.

10.1101/236836 — systems biology — Posted on 2017-12-20

452 EGL-19 AND EXP-2 ION CHANNELS MODELLING WITHIN C. ELEGANS PHARYNGEAL MUSCLE CELL ALLOWS REPRODUCTION OF CA2+ DRIVEN ACTION POTENTIALS, BOTH SINGLE EVENTS AND TRAINS

Palyanov, A.; Samoilova, K.; Palyanova, N.

10.1101/228650 — neuroscience — Posted on 2017-12-20

453 Autophagy enhances memory erasure through synaptic destabilization

Shehata, M.; Abdou, K.; Choko, K.; Matsuo, M.; Nishizono, H.; Inokuchi, K.

10.1101/237636 — neuroscience — Posted on 2017-12-20

454 CHARACTERIZATION OF THE bHLH FAMILY OF TRANSCRIPTIONAL REGULATORS IN THE ACOEL S. roscoffensis AND THEIR PUTATIVE ROLE IN NEUROGENESIS

Perea-Atienza, E.; Sprecher, S. G.; Martinez, P.

10.1101/237388 — developmental biology — Posted on 2017-12-20

455 A simple bioreactor-based method to generate kidney organoids from pluripotent stem cells

Przepiorski, A.; Sander, V.; Tran, T.; Hollywood, J.; Sorrenson, B.; Shih, J.-H.; Wolvetang, E. J.; McMahon, A. P.; Holm, T. M.; Davidson, A. J.

10.1101/237644 — developmental biology — Posted on 2017-12-20

456 Phospho-signal flow from a pole-localized microdomain spatially patterns transcription factor activity

Lasker, K.; von Diezmann, A.; Ahrens, D. G.; Mann, T. H.; Moerner, W. E.; Shapiro, L.

10.1101/220293 — cell biology — Posted on 2017-12-20

457 Transcriptomic characterization of 20 organs and tissues from mouse at single cell resolution creates a Tabula Muris

The Tabula Muris Consortium, ; Quake, S. R.; Wyss-Coray, T.; Darmanis, S.

10.1101/237446 — cell biology — Posted on 2017-12-20

458 Proteomic and biochemical comparison of the cellular interaction partners of human VPS33A and VPS33B

Hunter, M. R.; Hesketh, G. G.; Gingras, A.-C.; Graham, S. C.

10.1101/236695 — biochemistry — Posted on 2017-12-20

459 Process proteomics of beer reveals a dynamic proteome with extensive modifications

Schulz, B. L.; Phung, T. K.; Bruschi, M.; Janusz, A.; Stewart, J.; Mehan, J.; Healy, P.; Nouwens, A. S.; Fox, G. P.; Vickers, C. E.

10.1101/234252 — biochemistry — Posted on 2017-12-20

460 On information metrics for spatial coding

Souza, B.; Pavao, R.; Belchior, H.; Tort, A.

10.1101/189084 — neuroscience — Posted on 2017-12-20

461 The cycad coralloid root contains a diverse endophytic bacterial community including cyanobacteria encoding specific biosynthetic gene clusters

Barona-Gomez, F.; Corona-Gomez, A.; Gutierrez-Garcia, K.; Cruz-Morales, P.; Suarez-Moo, P.; Selem-Mojica, N.; Perez-Farrera, M. A.; Cibrian-Jaramillo, A.

10.1101/121160 — evolutionary biology — Posted on 2017-12-20

462 Temperate phages as self-replicating weapons in bacterial competition

Li, X.-Y.; Lachnit, T.; Fraune, S.; Bosch, T. C. G.; Traulsen, A.; Sieber, M.

10.1101/185751 — microbiology — Posted on 2017-12-20

463 The genomic determinants of adaptive evolution in a fungal pathogen

Grandaubert, J.; Dutheil, J. Y.; Stukenbrock, E. H.

10.1101/176727 — evolutionary biology — Posted on 2017-12-20

464 MERS-CoV spillover at the camel-human interface

Dudas, G.; Carvalho, L.; Rambaut, A.; Bedford, T.

10.1101/173211 — epidemiology — Posted on 2017-12-20

465 The compound topology of a continent-wide interaction network explained by an integrative hypothesis of specialization

Felix, G. M.; Pinheiro, R. B. P.; Poulin, R.; Krasnov, B. R.; Mello, M. A. R.

10.1101/236687 — ecology — Posted on 2017-12-20

466 A Nasal Brush-based Classifier of Asthma Identified by Machine Learning Analysis of Nasal RNA Sequence Data

Pandey, G.; Pandey, O. P.; Rogers, A. J.; Ahsen, M. E.; Hoffman, G. E.; Raby, B. A.; Weiss, S. T.; Schadt, E. E.; Bunyavanich, S.

10.1101/145771 — systems biology — Posted on 2017-12-20

467 Silver microwires from treating tooth decay with silver diamine fluoride

Seto, J.; Horst, J. A.; Parkinson, D. Y.; Frachella, J. C.; DeRisi, J. L.

10.1101/152199 — pharmacology and toxicology — Posted on 2017-12-20

468 Neuronal gain modulability is determined by dendritic morphology: a computational optogenetic study

Jarvis, S.; Nikolic, K.; Schultz, S.

10.1101/096586 — neuroscience — Posted on 2017-12-20

469 Criterion Setting is Implemented through Flexible Adjustment of Neural Excitability in Human Visual Cortex

Kloosterman, N. A.; de Gee, J. W.; Werkle-Bergner, M.; Lindenberger, U.; Garrett, D. D.; Fahrenfort, J. J.

10.1101/229989 — neuroscience — Posted on 2017-12-20

470 PHENOS: a high-throughput and flexible tool for microorganism growth phenotyping on solid media

Barton, D. B. H.; Georghiou, D.; Dave, N.; Alghamdi, M.; Walsh, T.; Louis, E. J.; Foster, S. S.

10.1101/195784 — microbiology — Posted on 2017-12-20

471 PGE2 production at sites of tissue injury promotes an anti-inflammatory neutrophil phenotype and determines the outcome of inflammation resolution in vivo

Loynes, C. A.; Lee, J. A.; Robertson, A. L.; Steel, M. J. G.; Ellett, F.; Feng, Y.; Levy, B. D.; Whyte, M. K.; Renshaw, S. A.

10.1101/205997 — immunology — Posted on 2017-12-20

472 LD Score regression as an estimator of confounding and genetic correlations in genome-wide association studies

Lee, J. J.; Chow, C. C.

10.1101/234815 — genetics — Posted on 2017-12-20

473 Copy number variation of ampliconic genes across major human Y haplogroups

Ye, D.; Zaidi, A. A.; Tomaszkiewicz, M.; Liebowitz, C.; DeGiorgio, M.; Shriver, M. D.; Makova, K. D.

10.1101/230342 — evolutionary biology — Posted on 2017-12-20

474 Demography and selection shape transcriptomic divergence in field crickets

Blankers, T.; Vilaca, S.; Waurick, I.; Gray, D.; Hennig, M.; Mazzoni, C.; Mayer, F.; Berdan, E.

10.1101/193839 — evolutionary biology — Posted on 2017-12-20

475 Revelation of the Genetic Basis for Convergent Innovative Anal Fin Pigmentation Patterns in Cichlid Fishes

Gu, L.; Xia, C.

10.1101/165217 — evolutionary biology — Posted on 2017-12-20

476 Effects of anthropogenic wildfire activity in low elevation Pacific island vegetation communities in French Polynesia

Newman, E. A.; Winkler, C. A.; Hembry, D. H.

10.1101/196352 — ecology — Posted on 2017-12-20

477 Competition of Charge-Mediated and Specific Binding by Peptide-Tagged Cationic Liposome-DNA Nanoparticles In Vitro and In Vivo

Wonder, E.; Simon-Gracia, L.; Scodeller, P.; Majzoub, R. N.; Kotamraju, V. R.; Ewert, K.; Teesalu, T.; Safinya, C. R.

10.1101/156166 — biophysics — Posted on 2017-12-20

478 Understanding Biological Visual Attention Using Convolutional Neural Networks

Lindsay, G. W.; Miller, K. D.

10.1101/233338 — neuroscience — Posted on 2017-12-20

479 Ubiquitin ligase LNX1 is a major regulator of glycine recapture by the presynaptic transporter GlyT2

Nunez, E.; Arribas-Gonzalez, E.; Lopez-Corcuera, B.; Aragon, C.; de Juan-Sanz, J.

10.1101/233213 — neuroscience — Posted on 2017-12-20

480 Isolation of nucleic acids from low biomass samples: detection and removal of sRNA contaminants

Heintz-Buschart, A.; Yusuf, D.; Kaysen, A.; Etheridge, A.; Fritz, J. V.; May, P.; de Beaufort, C.; Upadhyaya, B. B.; Ghosal, A.; Galas, D. J.; Wilmes, P.

10.1101/232975 — molecular biology — Posted on 2017-12-20

481 In silico identification of metabolic enzyme drug targets in Burkholderia pseudomallei

Challacombe, J. F.

10.1101/034306 — genomics — Posted on 2017-12-20

482 The compound topology of a continent-wide host-parasite network explained by an integrative hypothesis of specialization.

Felix, G. M.; Pinheiro, R. B. P.; Poulin, R.; Krasnov, B. R.; Mello, M. A. R.

10.1101/236687 — ecology — Posted on 2017-12-20

483 Learning causal biological networks with generalized Mendelian randomization

Badsha, M. B.; Fu, A. Q.

10.1101/171348 — bioinformatics — Posted on 2017-12-19

484 Domain-General and Domain-Specific Patterns of Activity Support Metacognition in Human Prefrontal Cortex

Morales, J.; Lau, H.; Fleming, S. M

10.1101/172445 — neuroscience — Posted on 2017-12-19

485 Quantification of very low-abundant proteins in bacteria using the HaloTag and epi-fluorescence microscopy

Talyor, H.; Lepore, A.; Landgraf, D.; Okumus, B.; Jaramillo-Riveri, S.; McLaren, L.; Paulsson, J.; El Karoui, M.

10.1101/237248 — systems biology — Posted on 2017-12-20

486 Missing pstS locus associated with an insertion in tetM in vancomycin resistant Enterococcus faecium

Lemonidis, K.; Salih, T. S.; Dancer, S. J.; Hunter, I. S.; Tucker, N. P.

10.1101/236786 — microbiology — Posted on 2017-12-20

487 The spatial position of budding yeast chromosomes affects gene expression

Di Giovanni, F.; Di Stefano, M.; Bau, D.; Carey, L. B.; Marti-Renom, M. A.; Mendoza, M.

10.1101/237263 — cell biology — Posted on 2017-12-20

488 RAB-35 and ARF-6 GTPases Mediate Engulfment and Clearance Following Linker Cell-Type Death

Kutscher, L. M.; Keil, W.; Shaham, S.

10.1101/237289 — cell biology — Posted on 2017-12-20

489 INFERENCE OF CELL TYPE COMPOSITION FROM HUMAN BRAIN TRANSCRIPTOMIC DATASETS ILLUMINATES THE EFFECTS OF AGE, MANNER OF DEATH, DISSECTION, AND PSYCHIATRIC DIAGNOSIS

Hagenauer, M. H.; Schulmann, A.; Li, J. Z.; Vawter, M. P.; Walsh, D. M.; Thompson, R. C.; Turner, C. A.; Bunney, W. E.; Myers, R. M.; Barchas, J. D.; Schatzberg, A. F.; Watson, S. J.; Akil, H.

10.1101/089391 — bioinformatics — Posted on 2017-12-20

490 The latent geometry of the human protein interaction network

Alanis-Lobato, G.; Mier, P.; Andrade-Navarro, M. A.

10.1101/213165 — systems biology — Posted on 2017-12-19

491 Non-parametric mixture models identify trajectories of childhood immune development relevant to asthma and allergy

Tang, H. H.; Teo, S. M.; Belgrave, D. C.; Evans, M. D.; Jackson, D. J.; Brozynska, M.; Kusel, M. M.; Johnston, S. L.; Gern, J. E.; Lemanske, R. F.; Simpson, A.; Custovic, A.; Sly, P. D.; Holt, P. G.; Holt, K. E.; Inouye, M.

10.1101/237073 — systems biology — Posted on 2017-12-20

492 Multiple strategies for heat adaptation in rice endosperms revealed by on-site cell-specific analysis

Wada, H.; Hatakeyama, Y.; Onda, Y.; Nonami, H.; Nakashima, T.; Erra-Balsells, R.; Morita, S.; Hiraoka, K.; Tanaka, F.; Nakano, H.

10.1101/235515 — plant biology — Posted on 2017-12-19

493 Synthetic hormone-responsive transcription factors can monitor and re-program plant development

Khakhar, A.; Leydon, A.; Lemmex, A.; Klavins, E.; Nemhauser, J.

10.1101/236901 — plant biology — Posted on 2017-12-19

494 Brain-behavior patterns define a dimensional biotype in medication-naïve adults with attention-deficit hyperactivity disorder

Lin, H.-Y.; Cocchi, L.; Zalesky, A.; Lv, J.; Perry, A.; Tseng, W.-Y. I.; Kundu, P.; Breakspear, M.; Gau, S. S.-F.

10.1101/190660 — neuroscience — Posted on 2017-12-19

495 Voluntary control of illusory contour formation

Harrison, W. J.; Rideaux, R.

10.1101/219279 — neuroscience — Posted on 2017-12-19

496 Effects of background and contour luminance on the hue and brightness of the Watercolor effect

Gerardin, P.; Dojat, M.; Knoblauch, K.; Devinck, F.

10.1101/223792 — neuroscience — Posted on 2017-12-19

497 Partial ablation of the orexin field induces a subnarcoleptic phenotype in a conditional mouse model of orexin neurodegeneration

Black, S. W.; Sun, J. D.; Santiago, P.; Laihsu, A.; Kimura, N.; Yamanaka, A.; Bersot, R.; Humphries, P. S.

10.1101/234765 — neuroscience — Posted on 2017-12-19

498 The segregation of vocal circuits solves a credit assignment problem associated with multi-objective reinforcement learning

Murdoch, D.; Chen, R.; Goldberg, J. H.

10.1101/236273 — neuroscience — Posted on 2017-12-19

499 The signaling lipid sphingosine 1-phosphate regulates mechanical pain

Hill, R. Z.; Hoffman, B.; Morita, T.; Campos, S. M.; Lumpkin, E. A.; Brem, R. B.; Bautista, D. M.

10.1101/236778 — neuroscience — Posted on 2017-12-19

500 Transient topographical dynamics of the electroencephalogram predict brain connectivity and behavioural responsiveness during drowsiness

Comsa, I. M.; Bekinschtein, T. A.; Chennu, S.

10.1101/231464 — neuroscience — Posted on 2017-12-20

501 Developmental effects of maternal smoking during pregnancy on the human frontal cortex transcriptome

Semick, S. A.; Collado-Torres, L.; Markunas, C. A.; Shin, J. H.; Deep-Soboslay, A.; Tao, R.; Bierut, L. J.; Maher, B. S.; Johnson, E. O.; Hyde, T. M.; Weinberger, D. R.; Hancock, D. B.; Kleinman, J. E.; Jaffe, A.

10.1101/236968 — neuroscience — Posted on 2017-12-20

502 Fully unsupervised online spike sorting based on an artificial spiking neural network

Bernert, M.; Yvert, B.

10.1101/236224 — neuroscience — Posted on 2017-12-20

503 NeuroField: Theory and Simulation of Multiscale Neural Field Dynamics

Sanz-Leon, P.; Robinson, P. A.; Knock, S. A.; Drysdale, P. D.; Abeysuriya, R. G.; Fung, P. K.; Rennie, C. J.; Zhao, X.

10.1101/237032 — neuroscience — Posted on 2017-12-20

504 Recent improvements to the automatic characterization and data collection algorithms on MASSIF-1

Svensson, O.; Gilski, M.; Nurizzo, D.; Bowler, M. W.

10.1101/236596 — molecular biology — Posted on 2017-12-19

505 Simplifying the combined use of CRISPR-Cas9 and Cre-loxP technologies for the efficient generation of targeted conditional gene knockouts in mammalian cells

Noiman, T.; Kahana, C.

10.1101/236679 — molecular biology — Posted on 2017-12-19

506 Deep sequencing reveals two Jurkat subpopulations with distinct miRNA profiles during camptothecin-induced apoptosis

Erdogan, I.; Cosacak, M. I. I.; Nalbant Aldanmaz, A.; Akgul, B.

10.1101/237099 — molecular biology — Posted on 2017-12-19

507 Spatial organization of single mRNPs at different stages of the gene expression pathway

Adivarahan, S.; Rahman, S.; Zenklusen, D.

10.1101/237008 — molecular biology — Posted on 2017-12-19

508 Structural basis of transcription inhibition by fidaxomicin (lipiarmycin A3)

Lin, W.; Das, K.; Degen, D.; Mazumder, A.; Duchi, D.; Wang, D.; Ebright, Y. W.; Ebright, R. Y.; Sineva, E.; Gigliotti, M.; Srivastava, A.; Mandal, S.; Jiang, Y.; Liu, Y.; Yin, R.; Zhang, Z.; Eng, E.; Thomas, D.; Donadio, S.; Zhang, H.; Zhang, C.; Kapanidis, A.; Ebright, R. H.

10.1101/237123 — molecular biology — Posted on 2017-12-20

509 Host adaptation mediated by intergenic evolution in a bacterial pathogen

Khademi, H.; Jelsbak, L.

10.1101/236000 — microbiology — Posted on 2017-12-19

510 Spontaneous dormancy protects Trypanosoma cruzi during extended drug exposure

Sanchez-Valdez, F. J.; Padilla, A.; Wang, W.; Orr, D.; Tarleton, R. L.

10.1101/235762 — microbiology — Posted on 2017-12-19

511 The primary transcriptome, small RNAs, and regulation of antimicrobial resistance in Acinetobacter baumannii

Kröger, C.; MacKenzie, K. D.; Al-Shabib, E. Y.; Kirzinger, M. W. B.; Suchan, D. M.; Chao, T.-C.; Akulova, V.; Miranda-CasoLuengo, A. A.; Monzon, V. A.; Conway, T.; Sivasankaran, S. K.; Hinton, J. C. D.; Hokamp, K.; Cameron, A. D. S.

10.1101/236794 — microbiology — Posted on 2017-12-19

512 Terminal uridylyltransferases target RNA viruses as part of the innate immune system in animals

Le Pen, J.; Jiang, H.; Di Domenico, T.; Kneuss, E.; Kosalka, J.; Morgan, M.; Much, C.; Rudolph, K. L. M.; Enright, A. J.; O'Carroll, D.; Wang, D.; Miska, E. A.

10.1101/209114 — immunology — Posted on 2017-12-19

513 The fruitENCODE project sheds light on the genetic and epigenetic basis of convergent evolution of climacteric fruit ripening

Lv, P.; Yu, S.; Zhu, N.; Chen, Y.-R.; Zhou, B.; Pan, Y.; Tzeng, D.; Paulo Fabi, J.; Garcia-Mas, J.; Ye, N.; Zhang, J.; Grierson, D.; Fei, Z.; Giovannoni, J.; Zhong, S.

10.1101/231258 — genomics — Posted on 2017-12-19

514 Correcting for population stratification reduces false positive and false negative results in joint analyses of host and pathogen genomes

Naret, O.; Chaturvedi, N.; Bartha, I.; Hammer, C.; Fellay, J.

10.1101/232900 — genomics — Posted on 2017-12-19

515 The prognostic effects of somatic mutations in ER-positive breast cancer

Griffith, O. L.; Spies, N. C.; Anurag, M.; Griffith, M.; Luo, J.; Tu, D.; Yeo, B.; Kunisaki, J.; Miller, C. A.; Krysiak, K.; Hundal, J.; Ainscough, B.; Skidmore, Z.; Campbell, K.; Kumar, R.; Fronick, C.; Cook, L.; Snider, J. E.; Davies, S.; Kavuri, S. M.; Chang, E. C.; Magrini, V.; Larson, D. E.; Fulton, R. S.; Liu, S.; Leung, S.; Voduc, D.; Bose, R.; Dowsett, M.; Wilson, R. K.; Nielsen, T. O.; Mardis, E. R.; Ellis, M. J.

10.1101/235846 — genomics — Posted on 2017-12-19

516 Comparative genomics of the major parasitic worms

International Helminth Genomes Consortium, ; Coghlan, A.; Mitreva, M.; Berriman, M.

10.1101/236539 — genomics — Posted on 2017-12-20

517 Cleaning clinical genomic data: Simple identification and removal of recurrently miscalled variants in single genomes

Field, M. A.; Burgio, G.; Al Shekaili, J.; Foote, S. J.; Cook, M. C.; Andrews, T. D.

10.1101/237107 — genomics — Posted on 2017-12-20

518 ketu mutant mice uncover an essential meiotic function for the ancient RNA helicase YTHDC2

Jain, D.; Puno, M. R.; Meydan, C.; Lailler, N.; Mason, C. E.; Lima, C. D.; Anderson, K. V.; Keeney, S.

10.1101/171827 — genetics — Posted on 2017-12-19

519 Using gene genealogies to localize rare variants associated with complex traits in diploid populations

Karunarathna, C. B.; Graham, J.

10.1101/182345 — genetics — Posted on 2017-12-19

520 Probabilistic fine-mapping of transcriptome-wide association studies

Mancuso, N.; Kichaev, G.; Shi, H.; Freund, M.; Giambartolomei, C.; Gusev, A.; Pasaniuc, B.

10.1101/236869 — genetics — Posted on 2017-12-20

521 Adaptive plasticity generates microclines in threespine stickleback male nuptial color

Brock, C.; Cummings, M.; Bolnick, D.

10.1101/236943 — evolutionary biology — Posted on 2017-12-20

522 Identification of the first endogenous Ophiovirus sequence.

Gifford, R. J.; Marsile-Medun, S.

10.1101/235044 — evolutionary biology — Posted on 2017-12-20

523 Ancient tropical extinctions contributed to the latitudinal diversity gradient

Meseguer, A. S.; Condamine, F. L.

10.1101/236646 — evolutionary biology — Posted on 2017-12-20

524 Robust, real-time and autonomous monitoring of ecosystems with an open, low-cost, networked device

Sethi, S. S.; Ewers, R. M.; Jones, N. S.; Orme, D.; Picinali, L.

10.1101/236075 — ecology — Posted on 2017-12-19

525 The compound topology of a continent-wide host-parasite network explained by an integrative hypothesis of specialization.

Felix, G. M.; Pinheiro, R. B. P.; Poulin, R.; Krasnov, B. R.; Mello, M. A. R.

10.1101/236687 — ecology — Posted on 2017-12-20

526 Foxd1 is required for terminal differentiation of anterior hypothalamic neuronal subtypes.

Newman, E. A.; Wan, J.; Wang, J.; Qian, J.; Blackshaw, S.

10.1101/236737 — developmental biology — Posted on 2017-12-19

527 Cytosolic delivery of large supramolecular proteincomplexes arranged on DNA nanopegboards

Nikolov, P. M.; Kossmann, K. J.; Schilling, A.; Angelin, A.; Brglez, J.; Klein, A.; Tampe, R.; Rabe, K. S.; Niemeyer, C. M.

10.1101/236729 — cell biology — Posted on 2017-12-19

528 Regulation of mitochondrial dynamics by Aurora A kinase

Grant, R.; Abdelbaki, A. M.; Bertoldi, A.; Gavilan, M. P.; Mansfeld, J.; Glover, D. M.; Lindon, C.

10.1101/236612 — cell biology — Posted on 2017-12-19

529 Ligand-regulated entry into the HRD ERAD pathway: The dark side of allostery

Wangeline, M. A.; Hampton, R. Y.

10.1101/177311 — cell biology — Posted on 2017-12-19

530 High-affinity low-capacity and low-affinity high-capacity N-acetyl-2-aminofluorene (AAF) macromolecular binding sites are revealed during the growth cycle of adult rat hepatocytes in primary culture

Koch, K. S.; Moran, T.; Shier, W. T.; Leffert, H. L.

10.1101/209130 — cancer biology — Posted on 2017-12-19

531 N-acetyl-2-aminofluorene (AAF) processing in adult rat hepatocytes in primary culture occurs by high-affinity low-velocity and low-affinity high-velocity AAF metabolite-forming systems

Koch, K. S.; Moran, T.; Shier, W. T.; Leffert, H. L.

10.1101/209072 — cancer biology — Posted on 2017-12-19

532 Candidate cancer driver mutations in super-enhancers and long-range chromatin interaction networks

Wadi, L.; Uuskula-Reimand, L.; Isaev, K.; Shuai, S.; Huang, V.; Liang, M.; Thompson, D.; Li, Y.; Ruan, L.; Paczkowska, M.; Krassowski, M.; Dzneladze, I.; Kron, K.; Murison, A.; Mazrooei, P.; Bristow, R. G.; Simpson, J. T.; Lupien, M.; Wilson, M. D.; Stein, L. D.; Boutros, P. C.; Reimand, J.

10.1101/236802 — cancer biology — Posted on 2017-12-19

533 The cancer-mutation network and the number and specificity of driver mutations

Iranzo, J.; Martincorena, I.; Koonin, E. V.

10.1101/237016 — cancer biology — Posted on 2017-12-19

534 Assessment of patient-specific efficacy of chemo- and targeted-therapies: a micropharmacology approach

Karolak, A. A.; Huffstutler, B.; Khan, Z.; Rejniak, K. A.

10.1101/236653 — cancer biology — Posted on 2017-12-20

535 Blue light is a universal tactic signal for Escherichia coli

Perlova, T.; Gruebele, M.; Chemla, Y. R.

10.1101/211474 — biophysics — Posted on 2017-12-19

536 ProteomeGenerator: A framework for comprehensive proteomics based on de novo transcriptome assembly and high-accuracy peptide mass spectral matching

Cifani, P.; Dhabaria, A.; Yoshimi, A.; Abdel-Wahab, O.; Poirier, J. T.; Kentsis, A.

10.1101/236844 — bioinformatics — Posted on 2017-12-19

537 Topology independent structural matching discovers novel templates for protein interfaces

Mirabello, C.; Wallner, B.

10.1101/235812 — bioinformatics — Posted on 2017-12-19

538 Exploring Single-Cell Data with Multitasking Deep Neural Networks

Amodio, M.; Srinivasan, K.; van Dijk, D.; Mohsen, H.; Yim, K.; Muhle, R.; Moon, K. R.; Kaech, S.; Sowell, R.; Montgomery, R.; Noonan, J.; Wolf, G.; Krishnaswamy, S.

10.1101/237065 — bioinformatics — Posted on 2017-12-19

539 Content-Aware Image Restoration: Pushing the Limits of Fluorescence Microscopy

Weigert, M.; Schmidt, U.; Boothe, T.; Muuml;ller, A.; Dibrov, A.; Jain, A.; Wilhelm, B.; Schmidt, D.; Broaddus, C.; Culley, S.; Rocha-Martins, M.; Segovia-Miranda, F.; Norden, C.; Henriques, R.; Zerial, M.; Solimena, M.; Rink, J.; Tomancak, P.; Royer, L.; Jug, F.; Myers, E. W.

10.1101/236463 — bioinformatics — Posted on 2017-12-19

540 Conservation of separase N-terminal domain

Melesse, M.; Bembenek, J. N.; Zhulin, I. B.

10.1101/236216 — bioinformatics — Posted on 2017-12-19

541 Clustering of Circular Consensus Sequences: Accurate Error Correction and Assembly of Single Molecule Real-Time Reads from Multiplexed Amplicon Libraries

Francis, F.; Dumas, M. D.; Davis, S. B.; Wisser, R. J.

10.1101/236893 — bioinformatics — Posted on 2017-12-20

542 Metannot: A succinct data structure for compression of colors in dynamic de Bruijn graphs

Mustafa, H.; Kahles, A.; Karasikov, M.; Raetsch, G.

10.1101/236711 — bioinformatics — Posted on 2017-12-20

543 Real-value and confidence prediction of protein backbone dihedral angles through a hybrid method of clustering and deep learning

Gao, Y.; Wang, S.; Deng, M.; Xu, J.

10.1101/236851 — bioinformatics — Posted on 2017-12-20

544 bioSyntax: Syntax Highlighting For Computational Biology

Babaian, A.; Ebou, A.; Fegen, A.; Kam, H. Y. J.; Novakovsky, G. E.; Wong, J.

10.1101/235820 — bioinformatics — Posted on 2017-12-20

545 Siccuracy: An R-package for executing genotype imputation strategy simulations with AlphaImpute

Edwards, S. M.

10.1101/236760 — bioinformatics — Posted on 2017-12-20

546 Analysis of Bone Healing with a Novel Bone Wax Substitute Compared to Bone Wax in a Porcine Bone Defect Model

Tham, T.; Costantino, P.; Roberts, K.; Burban, J.; Shanahan, J.

10.1101/236430 — bioengineering — Posted on 2017-12-20

547 Directed evolution of CRISPR-Cas9 to increase its specificity

Lee, J. K.; Jeong, E.; Lee, J.; Jung, M.; Shin, E.; Kim, Y.-h.; Lee, K.; Kim, D.; Kim, J.-S.; Kim, S.

10.1101/237040 — biochemistry — Posted on 2017-12-19

548 Renewed diversification following Miocene landscape turnover in a Neotropical butterfly radiation

Chazot, N.; Willmott, K. R.; Lamas, G.; Freitas, A. V. L.; Piron-Prunier, F.; Arias, C. F.; Mallet, J.; De-Silva, D. L.; Elias, M.

10.1101/148189 — evolutionary biology — Posted on 2017-12-19

549 Searching for the causal effects of BMI in over 300 000 individuals, using Mendelian randomization

Millard, L. A. C.; Davies, N. M.; Tilling, K.; Gaunt, T. R.; Davey Smith, G.

10.1101/236182 — epidemiology — Posted on 2017-12-19

550 Phylogenomics offers resolution of major tunicate relationships

Kocot, K. M.; Tassia, M. G.; Halanych, K. M.; Swalla, B. J.

10.1101/236505 — zoology — Posted on 2017-12-19

551 Self-limiting population genetic control with sex-linked genome editors

Burt, A.; Deredec, A.

10.1101/236489 — synthetic biology — Posted on 2017-12-19

552 LARGE, an AMPA receptor interactor, plays a large role in long-term memory formation by driving homeostatic scaling-down

Seo, B. A.; Cho, T.; Lee, D. Z.; Lee, H. Y.; Lee, J.-J.; Lee, B.; Kim, S.-W.; Cunningham, K. A.; Dineley, K. T.; Green, T. A.; Kim, H. M.; Choi, S.-Y.; Shin, H.-S.; Kang, M.-G.

10.1101/236547 — neuroscience — Posted on 2017-12-19

553 Social interactions impact on the dopaminergic system and drive individuality

Torquet, N.; Marti, F.; Campart, C.; Tolu, S.; Nguyen, C.; Oberto, V.; Naude, J.; Didienne, S.; Jezequel, S.; Le Gouestre, L.; Debray, N.; Mourot, A.; Mariani, J.; Faure, P.

10.1101/236554 — neuroscience — Posted on 2017-12-19

554 Fast and accurate edge orientation processing during object manipulation

Pruszynski, J. A.; Flanagan, J. R.; Johansson, R. S.

10.1101/163790 — neuroscience — Posted on 2017-12-19

555 The RacGAP βChimaerin is essential for cerebellar granule cell migration

Estep, J. A.; Wong, W.; Wong, Y.-C. E.; Loui, B. M.; Riccomagno, M. M.

10.1101/164897 — neuroscience — Posted on 2017-12-19

556 The detection of covariation of mRNA levels of large sets of genes across multiple human populations

Quan, Y.; Xie, C.; Williams, R. B. H.; Little, P.

10.1101/082842 — genetics — Posted on 2017-12-19

557 Bayesian divergence-time estimation with genome-wide SNP data of sea catfishes (Ariidae) supports Miocene closure of the Panamanian Isthmus

Stange, M.; Sanchez-Villagra, M. R.; Salzburger, W.; Matschiner, M.

10.1101/102129 — evolutionary biology — Posted on 2017-12-19

558 Theoretical solutions for the evaluation of discrimination capacity of species distribution models

Leroy, B.; Delsol, R.; Hugueny, B.; Meynard, C. N.; Barhoumi, C.; Barbet-Massin, M.; Bellard, C.

10.1101/235770 — ecology — Posted on 2017-12-19

559 Micropattern differentiation of mouse pluripotent stem cells recapitulates embryo regionalized fates and patterning

Hadjantonakis, A.-K.; Morgani, S.; Siggia, E. D.; Metzger, J. J.; Nichols, J.

10.1101/236562 — developmental biology — Posted on 2017-12-19

560 A protein standard that emulates homology for the characterization of protein inference algorithms

The, M.; Edfors, F.; Perez-Riverol, Y.; Payne, S. H.; Hoopmann, M. R.; Palmblad, M.; Forsström, B.; Käll, L.

10.1101/236471 — bioinformatics — Posted on 2017-12-19

561 CRISPR-typing PCR (ctPCR), a new Cas9-based DNA detection method

Wang, Q.; Zhang, B.; Xu, X.; Long, F.; Wang, J.

10.1101/236588 — biochemistry — Posted on 2017-12-19

562 Genome-wide association study of suicide death:Results from the first wave of Utah completed suicide data

Shabalin, A. A.; Anderson, J. S.; Shade, J.; Bakian, A.; Darlington, T.; Adkins, D. E.; Mickey, B.; Coon, H.; Docherty, A.

10.1101/234674 — genomics — Posted on 2017-12-19

563 A phylogenomic framework and timescale for comparative genomics and evolutionary developmental biology of tunicates

Delsuc, F.; Philippe, H.; Tsagkogeorga, G.; Simion, P.; Tilak, M.-K.; Turon, X.; Lopez-Legentil, S.; Piette, J.; Lemaire, P.; Douzery, E. J. P.

10.1101/236448 — evolutionary biology — Posted on 2017-12-19

564 Functional Compensation Between Hematopoietic Stem Cells In Vivo

Nguyen, L.; Wang, Z.; Chu, E.; Eerdeng, J.; Chowdhury, A.; Lu, R.

10.1101/236398 — systems biology — Posted on 2017-12-19

565 Distribution of Sigma factors delineates segregation of virulent and avirulent Mycobacterium

Gupta, A. M.; Mandal, S.

10.1101/235986 — microbiology — Posted on 2017-12-19

566 Theoretical Analysis of Inducer and Operator Binding for Cyclic-AMP Receptor Protein Mutants

Einav, T.; Duque, J.; Phillips, R.

10.1101/236455 — biophysics — Posted on 2017-12-19

567 A general method to predict the effect of single amino acid substitutions on enzyme catalytic activity

Lin, Y.-H.; Huang, C. L. V.; Ho, C.; Shatsky, M.; Kirsch, J. F.

10.1101/236265 — bioinformatics — Posted on 2017-12-19

568 Riding the Cell Jamming Boundary: Geometry, Topology, and Phase of Human Corneal Endothelium

Brookes, N. H.

10.1101/236406 — biophysics — Posted on 2017-12-18

569 Single-cell quantification of the concentration and dissociation constant of endogenous proteins

Komatsubara, A. T.; Matsuda, M.; Aoki, K.

10.1101/236422 — biochemistry — Posted on 2017-12-18

570 Distinct co-expression networks using multi-omic data reveal novel interventional targets in HPV-positive and negative head-and-neck squamous cell cancer

Lopes Costa, R.; Boroni, M.; Soares, M. A.

10.1101/236133 — systems biology — Posted on 2017-12-18

571 Identifying (un)controllable dynamical behavior with applications to biomolecular networks

Rozum, J. C.; Albert, R.

10.1101/236323 — systems biology — Posted on 2017-12-18

572 The segregation of vocal circuits solves a credit assignment problem associated with multi-objective reinforcement learning

Murdoch, D.; Chen, R.; Goldberg, J. H.

10.1101/236273 — neuroscience — Posted on 2017-12-18

573 Random Forest Feature Selection, Fusion and Ensemble Strategy: Combining Multiple Morphological MRI Measures to Discriminate among healthy elderly, MCI, cMCI and Alzheimer's disease patients: from the Alzheimer’s disease neuroimaging initiative (ADNI) database

Dimitriadis, S. I.; Liparas, D.; Tsolaki, M.

10.1101/236141 — neuroscience — Posted on 2017-12-18

574 Selective attention controls olfaction in rodents

Carlson, K. S.; Gadziola, M. A.; Dauster, E. S.; Wesson, D. W.

10.1101/236331 — neuroscience — Posted on 2017-12-18

575 Long-read sequencing of nascent RNA in S. pombe reveals coupling among RNA processing events

Herzel, L.; Straube, K.; Neugebauer, K. M.

10.1101/230334 — molecular biology — Posted on 2017-12-18

576 Multivariate genotypic analyses that identify specific genotypes to characterize disease and control groups in ADNI

Beaton, D.; Rieck, J.; Alhazmi, F.; the Alzheimer's Disease Neuroimaging Initiative, ; Abdi, H.

10.1101/235945 — genomics — Posted on 2017-12-18

577 Copy number variation and neurodevelopmental problems in females and males in the general population

Martin, J.; Tammimies, K.; Karlsson, R.; Lu, Y.; Larsson, H.; Lichtenstein, P.; Magnusson, P.

10.1101/236042 — genetics — Posted on 2017-12-18

578 Importance of homo-dimerization of Fanconi-associated nuclease 1 in DNA flap cleavage

Rao, T.; Longerich, S.; Zhao, W.; Aihara, H.; Sung, P.; Xiong, Y.

10.1101/236208 — biochemistry — Posted on 2017-12-18

579 Insights into platypus population structure and history from whole-genome sequencing

Martin, H. C.; Batty, E. M.; Hussin, J.; Westall, P.; Daish, T.; Kolomyjec, S.; Piazza, P.; Bowden, R.; Hawkins, M.; Grant, T.; Moritz, C.; Grutzner, F.; Gongora, J.; Donnelly, P.

10.1101/221481 — genomics — Posted on 2017-12-18

580 Fibroblast state switching orchestrates dermal maturation and wound healing

Rognoni, E.; Oliveira Pisco, A.; Hiratsuka, T.; Sipila, K.; Belmonte, J.; Mobasseri, A.; Dilao, R.; Watt, F.

10.1101/236232 — systems biology — Posted on 2017-12-18

581 BDNF and Tau as biomarkers of severity in Multiple Sclerosis

Islas-Hernandez, A.; Aguilar-Talamantes, H. S.; Bertado-Cortes, B.; Mejia-delCastillo, G. d. J.; Carrera-Pineda, R.; Cuevas-Garcia, C. F.; Garcia-delaTorre, P.

10.1101/236158 — neuroscience — Posted on 2017-12-18

582 Adult-specific trimethylation of histone H3 lysine 4 is prone to dynamic changes with aging in C. elegans somatic cells

Pu, M.; Wang, M.; Wang, W.; Velayudhan, S. S.; Lee, S. S.

10.1101/236257 — molecular biology — Posted on 2017-12-18

583 Antenatal microbial colonisation of mammalian gut

Borghi, E.; Massa, V.; Severgnini, M.; Fazio, G.; Avagliano, L.; Menegola, E.; Bulfamante, G.; Morace, G.; Borgo, F.

10.1101/236190 — microbiology — Posted on 2017-12-18

584 Network of orthologs and evolutionary context search unveil the landscape of gene transposition-duplication within the Brassicaceae family.

Oh, D.-H.; Dassanayake, M.

10.1101/236299 — genomics — Posted on 2017-12-18

585 In toto fluorescence live imaging in scuttle fly Megaselia abdita reveals gradual transitions towards a novel extraembryonic architecture.

Caroti, F.; Gonzalez Avalos, E.; Gonzalez Avalos, P.; Kromm, D.; Noeske, V.; Wosch, M.; Schütz, L.; Hufnagel, L.; Lemke, S.

10.1101/236364 — evolutionary biology — Posted on 2017-12-18

586 Two sets of wing homologs in the crustacean, Parhyale hawaiensis

Clark-Hachtel, C. M.; Tomoyasu, Y.

10.1101/236281 — evolutionary biology — Posted on 2017-12-18

587 Performance of serological antibody tests for bovine tuberculosis in cattle from infected herds in Northern Ireland

McCallan, L.; Brooks, C.; Couzens, C.; Young, F.; Byrne, A.; McNair, J.

10.1101/235184 — epidemiology — Posted on 2017-12-18

588 Anomalous Diffusion as a Descriptive Model of Cell Migration

Luzhanskey, I. D.; MacMunn, J. P.; Cohen, J. D.; Barney, L. E.; Jansen, L. E.; Schwartz, A. D.; Peyton, S.

10.1101/236356 — bioengineering — Posted on 2017-12-18

589 Promoter architecture determines co-translational regulation of mRNA

Espinar Calvo, M. L.; Schikora Tamarit, M. A.; Domingo Espinos, J.; Carey, L. B.

10.1101/192195 — systems biology — Posted on 2017-12-18

590 Computational Model for Simulating Drug-Induced Arrhythmia Sensitivity of Human iPSC-derived Cardiomyocytes

Gao, X.; Yin, Y.; Daily, N. J.; Engel, T.; Pang, L.; Carlson, B. E.; Wakatsuki, T.

10.1101/236240 — physiology — Posted on 2017-12-18

591 Learning naturalistic temporal structure in the posterior medial network

Aly, M.; Chen, J.; Turk-Browne, N. B.; Hasson, U.

10.1101/196287 — neuroscience — Posted on 2017-12-18

592 Human Herpes Virus 6 (HHV-6) - Pathogen or Passenger? A pilot study of clinical laboratory data and next generation sequencing

Sharp, C.; Golubchik, T.; Gregory, W. F.; McNaughton, A.; Gow, N.; Selvaratnam, M.; Mirea, A.; Foster, D.; Andersson, M.; Klenerman, P.; Jeffery, K.; Matthews, P.

10.1101/236083 — microbiology — Posted on 2017-12-18

593 Ecological Insights from the Evolutionary History of Microbial Innovations

Muscarella, M. E.; O'Dwyer, J. P.

10.1101/220939 — microbiology — Posted on 2017-12-18

594 Simulating Pedigrees Ascertained for Multiple Disease-Affected Relatives

Nieuwoudt, C.; Jones, S. J.; Brooks-Wilson, A.; Graham, J.

10.1101/234153 — genetics — Posted on 2017-12-18

595 Large-scale discovery of mouse transgenic integration sites reveals frequent structural variation and insertional mutagenesis

Goodwin, L. O.; Splinter, E.; Davis, T. L.; Urban, R.; He, H.; Braun, R. E.; Chesler, E. J.; Kumar, V.; van Min, M.; Ndukum, J.; Philip, V. M.; Reinholdt, L. G.; Svenson, K.; White, J. K.; Sasner, M.; Lutz, C.; Murray, S. A.

10.1101/236307 — genetics — Posted on 2017-12-18

596 Sex-specific gene and pathway modeling of inherited glioma risk

Ostrom, Q. T.; Coleman, W.; Huang, W.; Rubin, J. B.; Lathia, J. D.; Berens, M. E.; Speyer, G.; Liao, P.; Wrensch, M. R.; Eckel-Passow, J. E.; Armstrong, G.; Rice, T.; Wiencke, J. K.; McCoy, L. S.; Hansen, H. M.; Amos, C. I.; Bernstein, J. L.; Claus, E. B.; Il'yasova, D.; Johansen, C.; Lachance, D. H.; Lai, R. K.; Merrell, R. T.; Olson, S. H.; Sadetzki, S.; Schildkraut, J. M.; Shete, S.; Houlston, R. S.; Jenkins, R. B.; Andersson, U.; Rajaraman, P.; Chanock, S. J.; Linet, M. S.; Wang, Z.; Yeager, M.; Melin, B.; Bondy, M. L.; Barnholtz-Sloan, J. S.

10.1101/235408 — epidemiology — Posted on 2017-12-18

597 Transcriptomes and Raman spectra are linked linearly through a shared low-dimensional subspace

Kobayashi-Kirschvink, K. J.; Nakaoka, H.; Oda, A.; Kamei, K.-i. F.; Nosho, K.; Fukushima, H.; Kanesaki, Y.; Yajima, S.; Masaki, H.; Ohta, K.; Wakamoto, Y.

10.1101/235580 — systems biology — Posted on 2017-12-18

598 Measures of time series coupling based on generalized weighted multiple regression

Pascual-Marqui, R. D.; Biscay, R. J.; Bosch-Bayard, J.; Faber, P.; Kinoshita, T.; Kochi, K.; Milz, P.; Nishida, K.; Yoshimura, M.

10.1101/235721 — neuroscience — Posted on 2017-12-18

599 Environmental deformations dynamically shift the grid cell spatial metric

Keinath, A. T.; Epstein, R. A.; Balasubramanian, V.

10.1101/174367 — neuroscience — Posted on 2017-12-18

600 Characterisation and modelling of a polyhydroxyalkanoate synthase from Aquitalea sp. USM4 reveals a mechanism for polymer elongation

Teh, A.-H.; Chiam, N.-C.; Furusawa, G.; Sudesh, K.

10.1101/235556 — molecular biology — Posted on 2017-12-18

601 Deep generative models of genetic variation capture mutation effects

Riesselman, A. J.; Ingraham, J. B.; Marks, D. S.

10.1101/235655 — genetics — Posted on 2017-12-18

602 Sex in the wild: why field-based studies play a critical role in resolving the problem of sex

Neiman, M.; Meirmans, P.; Schwander, T.; Meirmans, S.

10.1101/235465 — evolutionary biology — Posted on 2017-12-18

603 Fast Bayesian Inference of Phylogenetic Models Using Parallel Likelihood Calculation and Adaptive Metropolis Sampling

Mitov, V.; Stadler, T.

10.1101/235739 — evolutionary biology — Posted on 2017-12-18

604 Language evolution to revolution: the jump from finite communication system with many words to infinite recursive language was associated with acquisition of mental synthesis

Vyshedskiy, A.

10.1101/166520 — evolutionary biology — Posted on 2017-12-18

605 SemEHR: A General-purpose Semantic Search System to Surface Semantic Data from Clinical Notes for Tailored Care, Trial Recruitment and Clinical Research

Wu, H.; Toti, G.; Morley, K.; Ibrahim, Z.; Folarin, A.; Jackson, R.; Kartoglu, I.; Agrawal, A.; Stringer, C.; Gale, D.; Gorrell, G.; Roberts, A.; Broadbent, M.; Stewart, R.; Dobson, R.

10.1101/235622 — bioinformatics — Posted on 2017-12-18

606 ACI-1 class A beta-lactamase is widespread across human gut microbiomes due to transposons harboured by tailed prophages

Rands, C. M.; Starikova, E. V.; Brüssow, H.; Kriventseva, E. V.; Govorun, V. M.; Zdobnov, E. M.

10.1101/235788 — microbiology — Posted on 2017-12-18

607 Fitness traits of deoxynivalenol and nivalenol-producing Fusarium graminearum species complex strains from wheat

Nicolli, C. P.; Machado, F. J.; Spolti, P.; Del Ponte, E. M.

10.1101/235895 — microbiology — Posted on 2017-12-18

608 Characterisation of two Toxoplasma PROPPINs homologous to Atg18/WIPI suggests they have evolved distinct specialised functions

Nguyen, H. M.; Liu, S.; Daher, W.; Tan, F.; Besteiro, S.

10.1101/236067 — microbiology — Posted on 2017-12-18

609 Molecular insights into Vibrio cholerae’s intra-amoebal host-pathogen interactions

Van der Henst, C.; Clerc, S.; Stutzmann, S.; Stoudmann, C.; Scrignari, T.; Maclachlan, C.; Knott, G.; Blokesch, M.

10.1101/235598 — microbiology — Posted on 2017-12-18

610 Biodiversity loss under future global socio-economic and climate scenarios

Chaudhary, A.; Mooers, A. O.

10.1101/235705 — ecology — Posted on 2017-12-18

611 Multi-Parametric and Multi-Regional Histogram Analysis of MRI: Revealing Imaging Phenotypes of Glioblastoma Correlated with Patient Survival

Li, C.; Wang, S.; Serra, A.; Torheim, T.; Yan, J.-L.; Boonzaier, N. R.; Matys, T.; McLean, M. A.; Markowetz, F.; Price, S. J.

10.1101/235861 — bioinformatics — Posted on 2017-12-18

612 Topology independent structural matching discovers novel templates for protein interface

Mirabello, C.; Wallner, B.

10.1101/235812 — bioinformatics — Posted on 2017-12-18

613 Mutations alter RNA-mediated conversion of human prions

Alred, E. J.; Lodangco, I.; Gallaher, J.; Hansmann, U.

10.1101/235879 — biochemistry — Posted on 2017-12-18

614 CLIQ-BID: A method to quantify bacteria-induced damage to eukaryotic cells by automated live-imaging of bright nuclei

Wallez, Y.; Bouillot, S.; Soleilhac, E.; Huber, P.; Attree, I.; Faudry, E.

10.1101/236091 — microbiology — Posted on 2017-12-18

615 Formation of retinal direction-selective circuitry initiated by starburst amacrine cell homotypic contact

Ray, T. A.; Roy, S.; Kozlowski, C.; Wang, J.; Cafaro, J.; Hulbert, S.; Wright, C. V. E.; Field, G. D.; Kay, J. N.

10.1101/235978 — neuroscience — Posted on 2017-12-18

616 Mushroom body-specific profiling of gene expression identifies regulators of long-term memory in Drosophila

Widmer, Y. F.; Bilican, A.; Bruggmann, R.; Sprecher, S.

10.1101/235960 — neuroscience — Posted on 2017-12-18

617 Replay of Stimulus Specific Temporal Patterns during Associative Memory Formation

Michelmann, S.; Bowman, H.; Hanslmayr, S.

10.1101/236059 — neuroscience — Posted on 2017-12-18

618 A potential link between gambling addiction severity and central dopamine levels -- evidence from spontaneous eye blink rates in gamblers and controls

Mathar, D.; Wiehler, A.; Chakroun, K.; Goltz, D.; Peters, J.

10.1101/236109 — neuroscience — Posted on 2017-12-18

619 Human Herpes Virus 6 (HHV-6) - Pathogen or Passenger? A pilot study of clinical laboratory data and next generation sequencing

Sharp, C.; Golubchik, T.; Gregory, W. F.; McNaughton, A.; Gow, N.; Selvaratnam, M.; Mirea, A.; Foster, D.; Andersson, M.; Klenerman, P.; Jeffery, K.; Matthews, P.

10.1101/236083 — microbiology — Posted on 2017-12-18

620 High-dimensional microbiome interactions shape host fitness

Gould, A. L.; Zhang, V.; Lamberti, L.; Jones, E. W.; Obadia, B.; Gavryushkin, A.; Carlson, J. M.; Beerenwinkel, N.; Ludington, W. B.

10.1101/232959 — microbiology — Posted on 2017-12-18

621 How, when, and where relic DNA biases estimates of microbial diversity

Lennon, J. T.; Muscarella, M. E.; Placella, S. A.; Lehmkuhl, B. K.

10.1101/131284 — microbiology — Posted on 2017-12-18

622 On the decidability of population size histories from finite allele frequency spectra

Baharian, S.; Gravel, S.

10.1101/235317 — genetics — Posted on 2017-12-18

623 Robust, real-time and autonomous monitoring of ecosystems with an open, low-cost, networked device

Sethi, S. S.; Ewers, R. M.; Jones, N. S.; Orme, D.; Picinali, L.

10.1101/236075 — ecology — Posted on 2017-12-18

624 Ex vivo live cell tracking in kidney organoids using light sheet fluorescence microscopy

Held, M.; Santeramo, I.; Wilm, B.; Murray, P.; Levy, R.

10.1101/233114 — developmental biology — Posted on 2017-12-18

625 Size Matters: Metastatic cluster size and stromal recruitment in the establishment of successful prostate cancer to bone metastases

Araujo, A.; Cook, L.; Lynch, C.; Basanta, D.

10.1101/235911 — cancer biology — Posted on 2017-12-18

626 Influence of fecal collection conditions and 16S rRNA gene sequencing protocols at two centers on human gut microbiota analysis

Penington, J. S.; Penno, M. A. S.; Ngui, K. M.; Ajami, N. J.; Roth-Schulze, A. J.; Wilcox, S. A.; Bandala-Sanchez, E.; Wentworth, J. M.; Barry, S. C.; Brown, C. Y.; Couper, J. J.; Petrosino, J. F.; Papenfuss, A. T.; Harrison, L. C.; The ENDIA Study Group,

10.1101/175877 — bioinformatics — Posted on 2017-12-18

627 Personal genomics: new concepts for future community data banks

Dodin, G.

10.1101/230516 — bioinformatics — Posted on 2017-12-18

628 Predictions of Protein-Protein Interactions in Schistosoma mansoni

White Bear, J.

10.1101/233072 — bioinformatics — Posted on 2017-12-18

629 Real-time search of all bacterial and viral genomic data

Bradley, P.; den Bakker, H.; Rocha, E.; McVean, G.; Iqbal, Z.

10.1101/234955 — bioinformatics — Posted on 2017-12-18

630 Personal genomics: new concepts for future community data banks

Dodin, G.

10.1101/230516 — bioinformatics — Posted on 2017-12-18

631 A cross-cultural study of sex-typicality and averageness: Correlation between frontal and lateral measures of human faces

Danel, D. P.; Varella Valentova, J.; Sanchez, O. R.; Leongomez, J. D.; Varella, M. A. C.; Kleisner, K.

10.1101/194662 — animal behavior and cognition — Posted on 2017-12-18

632 Blue Light Negatively Regulates Tolerance to Phosphate Deficiency in Arabidopsis

Yeh, C.-M.; Kobayashi, K.; Fujii, S.; Fukaki, H.; Mitsuda, N.; Ohme-Takagi, M.

10.1101/235952 — plant biology — Posted on 2017-12-18

633 Oxytocin gene networks in the human brain: A gene expression and large-scale fMRI meta-analysis study

Quintana, D. S.; Rokicki, J.; van der Meer, D.; Alnaes, D.; Kaufmann, T.; Palomera, A. C.; Dieset, I.; Andreassen, O. A.; Westlye, L. T.

10.1101/149526 — neuroscience — Posted on 2017-12-18

634 How, when, and where relic DNA biases estimates of microbial diversity

Lennon, J. T.; Muscarella, M. E.; Muscarella, S. A.; Lehmkuhl, B. K.

10.1101/131284 — microbiology — Posted on 2017-12-18

635 The ecological genetics of Pseudomonas syringae residing on the kiwifruit leaf surface

Straub, C.; Colombi, E.; Li, L.; Huang, H.; Templeton, M. D.; McCann, H. C.; Rainey, P. B.

10.1101/235853 — microbiology — Posted on 2017-12-18

636 Human enhancers harboring specific sequence composition, activity, and genome organization are linked to the immune response

Lecellier, C.-H.; Li, J.; Chiu, T.-P.; Wasserman, W. W.; Rohs, R.; Mathelier, A.

10.1101/078477 — genomics — Posted on 2017-12-18

637 Universal Alternative Splicing Of Noncoding Exons

Deveson, I. W.; Brunck, M. E.; Blackburn, J.; Tseng, E.; Hon, T.; Clark, T. A.; Clark, M. B.; Crawford, J.; Dinger, M. E.; Nielsen, L. K.; Mattick, J. S.; Mercer, T. R.

10.1101/136275 — genomics — Posted on 2017-12-18

638 Renewed diversification following Miocene landscape turnover in a Neotropical butterfly radiation

Chazot, N.; Willmott, K. R.; Lamas, G.; Freitas, A. V. L.; Piron-Prunier, F.; Arias, C. F.; Mallet, J.; De-Silva, D. L.; Elias, M.

10.1101/148189 — evolutionary biology — Posted on 2017-12-18

639 Sex-specific genome-wide association study in glioma identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21

Ostrom, Q. T.; Kinnersley, B.; Wrensch, M. R.; Eckel-Passow, J. E.; Armstrong, G.; Rice, T.; Chen, Y.; Wiencke, J. K.; McCoy, L. S.; Hansen, H. M.; Amos, C. I.; Bernstein, J. L.; Claus, E. B.; Il'yasova, D.; Johansen, C.; Lachance, D. H.; Lai, R. K.; Merrell, R. T.; Olson, S. H.; Sadetzki, S.; Schildkraut, J. M.; Shete, S.; Rubin, J. B.; Lathia, J. D.; Berens, M. E.; Andersson, U.; Rajaraman, P.; Chanock, S. J.; Linet, M. S.; Wang, Z.; Yeager, M.; Houlston, R. S.; Jenkins, R. B.; Melin, B.; Bondy, M. L.; Barnholtz-Sloan, J. S.

10.1101/229112 — epidemiology — Posted on 2017-12-18

640 Correction of the Framingham Risk Score Data Reported in SPRINT

Warner, F.; Dhruva, S. S.; Ross, J. S.; Dey, P.; Murugiah, K.; Krumholz, H. M.

10.1101/235358 — clinical trials — Posted on 2017-12-18

641 AP-4 vesicles unmasked by organellar proteomics to reveal their cargo and machinery

Davies, A. K.; Itzhak, D. N.; Edgar, J. R.; Archuleta, T. L.; Hirst, J.; Jackson, L. P.; Robinson, M. S.; Borner, G. H. H.

10.1101/235226 — cell biology — Posted on 2017-12-18

642 The tumor suppressor APC is an attenuator of spindle-pulling forces during C. elegans asymmetric cell division

Sugioka, K.; Fielmich, L.-E.; Mizumoto, K.; Bowerman, B.; van den Heuvel, S.; Kimura, A.; Sawa, H.

10.1101/157404 — cell biology — Posted on 2017-12-18

643 Muscle specific stress fibers give rise to sarcomeres and are mechanistically distinct from stress fibers in non-muscle cells

Feinx, A. M.; Taneja, N.; Neininger, A. C.; Visetsouk, M. R.; Nixon, B. R.; Manalo, A. E.; Becker, J. R.; Crawley, S. W.; Bader, D. M.; Tyska, M. J.; Gutzman, J. H.; Burnette, D. T.

10.1101/235424 — cell biology — Posted on 2017-12-18

644 Structural-Kinetic-Thermodynamic Relationships for Peptide Secondary Structure Formation Identified from Transition Network Properties

Rudzinski, J. F.; Bereau, T.

10.1101/183053 — biophysics — Posted on 2017-12-18

645 Hi-TOM: a platform for high-throughput tracking of mutations induced by CRISPR/Cas systems

Liu, Q.; Wang, C.; Jiao, X.; Zhang, H.; Song, L.; Li, Y.; Gao, C.; Wang, K.

10.1101/235903 — bioinformatics — Posted on 2017-12-18

646 Integration of A New Sensory Skill with Vision After Less Than 3 Hours of Training

Negen, J.; Wen, L.; Thaler, L.; Nardini, M.

10.1101/232579 — animal behavior and cognition — Posted on 2017-12-18

647 Coherent representations of subjective spatial position in primary visual cortex and hippocampus

Saleem, A. B.; Diamanti, E. M.; Fournier, J.; Harris, K. D.; Carandini, M.

10.1101/235648 — neuroscience — Posted on 2017-12-18

648 Multiplexed targeted resequencing identifies coding and regulatory variation underlying phenotypic extremes of HDL-cholesterol in humans

Khetarpal, S. A.; Babb, P. L.; Zhao, W.; Hancock-Cerutti, W. F.; Brown, C. D.; Rader, D. J.; Voight, B. F.

10.1101/235887 — genomics — Posted on 2017-12-18

649 Linkage Disequilibrium Estimation in Low Coverage High-Throughput Sequencing Data

Bilton, T. P.; McEwan, J. C.; Clarke, S. M.; Brauning, R.; van Stijn, T. C.; Rowe, S. J.; Dodds, K. G.

10.1101/235937 — genetics — Posted on 2017-12-18

650 Deep generative models of genetic variation capture mutation effects

Riesselman, A. J.; Ingraham, J. B.; Marks, D. S.

10.1101/235655 — genetics — Posted on 2017-12-18

651 Optimal cross selection for long-term genetic gain in two-part programs with rapid recurrent genomic selection

Gorjanc, G.; Gaynor, R. C.; Hickey, J. M.

10.1101/227215 — genetics — Posted on 2017-12-18

652 Molecular data from Orthonectid worms show they are highly degenerate members of phylum Annelida not phylum Mesozoa.

Schiffer, P.; Robertson, H.; Telford, M. J.

10.1101/235549 — evolutionary biology — Posted on 2017-12-18

653 High throughput single cell RNA-seq of developing mouse kidney and human kidney organoids reveals a roadmap for recreating the kidney

Combes, A. N.; Phipson, B.; Zappia, L.; Lawlor, K.; Er, P. X.; Oshlack, A.; Little, M.

10.1101/235499 — developmental biology — Posted on 2017-12-17

654 Statistical mechanics of cell decision-making: the cell migration force distribution

Hatzikirou, H.

10.1101/235689 — systems biology — Posted on 2017-12-17

655 On how the dentate gyrus contributes to memory discrimination

van Dijk, M.; Fenton, A.

10.1101/235473 — neuroscience — Posted on 2017-12-17

656 Identification of Subsets of Genetic Alterations in KRAS-mutant Lung Cancer using Association Rule Mining

Tayou, J.

10.1101/235390 — cancer biology — Posted on 2017-12-17

657 GORAB, a Golgi protein required for centriole structure and duplication

Kovacs, L.; Chao-Chu, J.; Schneider, S.; Gottardo, M.; Tzolovsky, G.; Dzhindzhev, N. S.; Riparbelli, M. G.; Callaini, G.; Glover, D. M.

10.1101/232272 — cell biology — Posted on 2017-12-17

658 Sleep spindle refractoriness segregates periods of memory reactivation

Antony, J.; Piloto, L. R.; Wang, M.; Pacheco, P.; Norman, K. A.; Paller, K. A.

10.1101/235606 — neuroscience — Posted on 2017-12-17

659 Comparing methods for detecting multilocus adaptation with multivariate genotype-environment associations

Forester, B. R.; Lasky, J. R.; Wagner, H. H.; Urban, D. L.

10.1101/129460 — genomics — Posted on 2017-12-17

660 Genome wide association study of behavioral, physiological and gene expression traits in a multigenerational mouse intercross

Gonzales, N. M.; Seo, J.; Hernandez-Cordero, A. I.; St. Pierre, C. L.; Gregory, J. S.; Distler, M. G.; Abney, M.; Canzar, S.; Lionikas, A.; Palmer, A. A.

10.1101/230920 — genetics — Posted on 2017-12-17

661 In-depth characterization of the cisplatin mutational signature in human cell lines and in esophageal and liver tumors

Boot, A.; Huang, M. N.; Ng, A. W. T.; Ho, S.-C.; Lim, J. Q.; Kawakami, Y.; Chayama, K.; Teh, B. T.; Nakagawa, H.; Rozen, S. G.

10.1101/189233 — cancer biology — Posted on 2017-12-17

662 Multiple strategies for heat adaptation in rice endosperms revealed by on-site cell-specific analysis

Wada, H.; Hatakeyama, Y.; Onda, Y.; Nonami, H.; Nakashima, T.; Erra-Balsells, R.; Morita, S.; Hiraoka, K.; Tanaka, F.; Nakano, H.

10.1101/235515 — plant biology — Posted on 2017-12-17

663 Phylogenetic and Phenotypic Characterization of the Energy-taxis Receptor Aer in Pseudomonas

Booth, S. C.; Turner, R. J.

10.1101/081455 — microbiology — Posted on 2017-12-17

664 A cytoplasmic Argonaute protein promotes the inheritance of RNAi

Xu, F.; Feng, X.; Chen, X.; Weng, C.; Yan, Q.; Xu, T.; Hong, M.; Guang, S.

10.1101/235713 — genetics — Posted on 2017-12-17

665 RNA sequencing of Stentor cell fragments reveals key processes underlying cellular regeneration

Onsbring Gustafson, H.; Jamy, M.; Ettema, T. J. G.

10.1101/232363 — genomics — Posted on 2017-12-16

666 High throughput single cell RNA-seq of developing mouse kidney and human kidney organoids reveals a roadmap for recreating the kidney

Combes, A. N.; Phipson, B.; Zappia, L.; Lawlor, K.; Er, P. X.; Oshlack, A.; Little, M.

10.1101/235499 — developmental biology — Posted on 2017-12-16

667 Complementary studies of lipid membrane dynamics using iSCAT and STED microscopy

Reina, F.; Galiani, S.; Shrestha, D.; Sezgin, E.; de Wit, G.; Cole, D.; Lagerholm, B. C.; Kukura, P.; Eggeling, C.

10.1101/235564 — biophysics — Posted on 2017-12-16

668 Insights into DNA substrate selection by APOBEC3G from structural, biochemical, and functional studies.

Ziegler, S. J.; Liu, C.; Landau, M.; Buzovetsky, O.; Desimmie, B. A.; Zhao, Q.; Sasaki, T.; Burdick, R. C.; Pathak, V. K.; Anderson, K. S.; Xiong, Y.

10.1101/235481 — biophysics — Posted on 2017-12-16

669 Sleep spindle refractoriness segregates periods of memory reactivation

Antony, J.; Piloto, L. R.; Wang, M.; Pacheco, P.; Norman, K. A.; Paller, K. A.

10.1101/235606 — neuroscience — Posted on 2017-12-16

670 Mapping mutational effects along the evolutionary landscape of HIV envelope

Haddox, H. K.; Dingens, A. S.; Hilton, S. K.; Overbaugh, J.; Bloom, J. D.

10.1101/235630 — microbiology — Posted on 2017-12-16

671 LD Score regression as an estimator of confounding and genetic correlations in genome-wide association studies

Lee, J. J.; Chow, C. C.

10.1101/234815 — genetics — Posted on 2017-12-16

672 Metals enable a non-enzymatic acetyl CoA pathway

Varma, S. J.; Muchowska, K. B.; Chatelain, P.; Moran, J.

10.1101/235523 — evolutionary biology — Posted on 2017-12-16

673 S1PR3 mediates inflammatory pain and itch via distinct TRP channel-dependent pathways

Hill, R. Z.; Morita, T.; Brem, R. B.; Bautista, D. M.

10.1101/235614 — neuroscience — Posted on 2017-12-16

674 AP-4 mediated ATG9A sorting underlies axonal and autophagosome biogenesis defects in a mouse model of AP-4 deficiency syndrome

Ivankovic, D.; Lopez-Domenech, G.; Drew, J.; Tooze, S. A.; Kittler, J. T.

10.1101/235101 — neuroscience — Posted on 2017-12-16

675 Decoding affective states across databases using functional near-infrared spectroscopy

Trambaiolli, L.; Tossato, J.; Cravo, A.; Biazoli, C.; Sato, J.

10.1101/228007 — neuroscience — Posted on 2017-12-16

676 Ultrasonic Neuromodulation Causes Widespread Cortical Activation via an Indirect Auditory Mechanism

Sato, T.; Shapiro, M.; Tsao, D.

10.1101/234211 — neuroscience — Posted on 2017-12-16

677 SLAM-ITseq: Sequencing cell type-specific transcriptomes without cell sorting

Matsushima, W.; Herzog, V. A.; Neumann, T.; Gapp, K.; Zuber, J.; Ameres, S. L.; Miska, E. A.

10.1101/235093 — molecular biology — Posted on 2017-12-16

678 Tuning Spatial Profiles of Selection Pressure to Modulate the Evolution of Resistance

De Jong, M. G.; Wood, K. B.

10.1101/230854 — evolutionary biology — Posted on 2017-12-16

679 Evaluation of variability in high resolution protein structures by global distance scoring

Anzai, R.; Asami, Y.; Inoue, W.; Ueno, H.; Yamada, K.; Okada, T.

10.1101/202028 — biophysics — Posted on 2017-12-16

680 Creating a universal SNP and small indel variant caller with deep neural networks

Poplin, R.; Newburger, D.; Dijamco, J.; Nguyen, N.; Loy, D.; Gross, S. S.; McLean, C. Y.; DePristo, M. A.

10.1101/092890 — genomics — Posted on 2017-12-16

681 Pathway-Level Information ExtractoR (PLIER) for gene expression data

Mao, W.; Harmann, B.; Sealfon, S. C.; Zaslavsky, E.; Chikina, M.

10.1101/116061 — genomics — Posted on 2017-12-16

682 Comparison of two ancient DNA extraction protocols for skeletal remains from tropical environments

Nieves-Colon, M. A.; Ozga, A. T.; Pestle, W. J.; Cucina, A.; Tiesler, V.; Stanton, T. W.; Stone, A. C.

10.1101/184119 — genetics — Posted on 2017-12-16

683 On The Number Of Siblings And p-th Cousins In A Large Population Sample

Shchur, V.; Nielsen, R.

10.1101/145599 — evolutionary biology — Posted on 2017-12-16

684 Does 10-Hz cathodal oscillating current of the parieto-occipital lobe modulate target detection?

Sheldon, S. S.; Mathewson, K. E.

10.1101/235416 — neuroscience — Posted on 2017-12-16

685 A cortical pathway modulates sensory input into the olfactory striatum

White, K. A.; Zhang, Y.-F.; Zhang, Z.; Bhattarai, J. P.; Moberly, A. H.; in 't Zandt, E.; Mi, H.; Jia, X.; Fuccillo, M. V.; Xu, F.; Ma, M.; Wesson, D. W.

10.1101/235291 — neuroscience — Posted on 2017-12-16

686 A Comprehensive Evaluation of the Genetic Architecture of Sudden Cardiac Arrest

Ashar, F. N.; Mitchell, R. N.; Albert, C. M.; Newton-Cheh, C.; Brody, J. A.; Muller-Nurasyid, M.; Moes, A.; Meitinger, T.; Mak, A.; Huikuri, H.; Junttila, M. J.; Goyette, P.; Pulit, S. L.; Pazoki, R.; Tanck, M. W.; Blom, M. T.; Zhao, X.; Hauvlinna, A. S.; Jabbari, R.; Glinge, C.; Tragante, V.; Escher, S. A.; Chakravarti, A.; Ehret, G.; Coresh, J.; Li, M.; Prineas, R. J.; Franco, O. H.; Kwok, P.-Y.; Lumley, T.; Dumas, F.; McKnight, B.; Rotter, J. I.; Lemaitre, R. N.; Heckbert, S. R.; O'Donnell, C. J.; Hwang, S.-J.; Tardif, J.-C.; Kortelainen, M.-L.; VanDenburgh, M.; Uitterlinden, A. G.; Hofman,

10.1101/235234 — genetics — Posted on 2017-12-16

687 Modulation of formin processivity by profilin and mechanical tension

Kerleau, M.; Cao, L.; Suzuki, E.; Wioland, H.; Jouet, S.; Guichard, B.; Lenz, M.; Romet-Lemonne, G.; Jegou, A.

10.1101/235333 — biophysics — Posted on 2017-12-16

688 Video Assessment of Head Impact Exposure in American Football

Kuo, C.; Wu, L. C.; Loza, J.; Senif, D.; Anderson, S.; Camarillo, D. B.

10.1101/235432 — bioengineering — Posted on 2017-12-16

689 Global, multiplexed dendritic computations under in vivo-like conditions

Ujfalussy, B. B.; Lengyel, M.; Branco, T.

10.1101/235259 — neuroscience — Posted on 2017-12-16

690 The intricate interplay of spatial attention and expectation

Zuanazzi, A.; Noppeney, U.

10.1101/235218 — neuroscience — Posted on 2017-12-16

691 Ultraconserved elements occupy specific arenas of three-dimensional mammalian genome organization

McCole, R.; Erceg, J.; Saylor, W.; Wu, C.- t.

10.1101/235242 — genomics — Posted on 2017-12-16

692 Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-Seq

Cole, M. B.; Risso, D.; Wagner, A.; DeTomaso, D.; Ngai, J.; Purdom, E.; Dudoit, S.; Yosef, N.

10.1101/235382 — genomics — Posted on 2017-12-16

693 On the decidability of population size histories from finite allele frequency spectra

Gravel, S.; Gravel, S.

10.1101/235317 — genetics — Posted on 2017-12-16

694 Population genomics of pneumococcal carriage in Massachusetts children following PCV-13 introduction

Mitchell, P.; Azarian, T.; Croucher, N. J.; Callendrello, A.; Thompson, C. M.; Pelton, S. I.; Lipsitch, M.; Hanage, W.

10.1101/235192 — evolutionary biology — Posted on 2017-12-16

695 Phylofactorization - a graph partitioning algorithm to identify phylogenetic scales of ecological data

Washburne, A. D.; Silverman, J. D.; Morton, J. T.; Becker, D.; Crowley, D.; Mukherjee, S.; David, L. A.; Plowright, R. K.

10.1101/235341 — ecology — Posted on 2017-12-16

696 Growth and extended survival of Escherichia coli O157:H7 in soil organic matter

NandaKafle, G.; Christie, A. A.; Vilain, S.; Brozel, V. S.

10.1101/235275 — microbiology — Posted on 2017-12-16

697 Microbial community structure predicted by the stable marriage problem

Goyal, A.; Dubinkina, V.; Maslov, S.

10.1101/235374 — ecology — Posted on 2017-12-16

698 Cost evaluation during decision making in patients at early stages of psychosis

Ermakova, A. O.; Gileadi, N.; Knolle, F.; Justicia Diaz, A.; Anderson, R.; Fletcher, P. C.; Moutoussis, M.; Murray, G.

10.1101/225920 — neuroscience — Posted on 2017-12-15

699 Stability, affinity and chromatic variants of the glutamate sensor iGluSnFR

Marvin, J. S.; Scholl, B.; Wilson, D. E.; Podgorski, K.; Kazemipour, A.; Mueller, J. A.; Schoch-McGovern, S.; Wang, S. S.-H.; Urra Quiroz, F. J.; Rebola, N.; Bao, H.; Little, J. P.; Tkachuk, A. N.; Hantman, A. W.; Chapman, E. R.; Dietrich, D.; DiGregorio, D. A.; Fitzpatrick, D.; Looger, L. L.

10.1101/235176 — neuroscience — Posted on 2017-12-15

700 Recovery Dynamics of the High Frequency Alternating Current Nerve Block

Rapeaux, A.; Brunton, E.; Nazarpour, K.; Constandinou, T.

10.1101/235135 — neuroscience — Posted on 2017-12-15

701 H2AFX AND MDC1 PROTECT GENOMIC INTEGRITY IN MALE GERM CELLS BY PROMOTING RECOMBINATION AND ACTIVATION OF THE RECOMBINATION-DEPENDENT CHECKPOINT

Testa, E.; Nardozi, D.; Antinozzi, C.; Faieta, M.; Di Cecca, S.; Caggiano, C.; Fukuda, T.; Bonanno, E.; Zenkun, L.; Maldonado, A.; Roig, I.; Di Giacomo, M.; Barchi, M.

10.1101/235085 — developmental biology — Posted on 2017-12-15

702 Testing hypotheses on population dynamics: A test for the inhomogeneous Poisson point process model

Hohmann, N.

10.1101/234948 — bioinformatics — Posted on 2017-12-15

703 Genome-wide post-transcriptional dysregulation by microRNAs in human asthma as revealed by Frac-seq

Martinez-Nunez, R. T.; Rupani, H.; Plate, M.; Niranjan, M.; Chambers, R. C.; Howarth, P. H.; Sanchez-Elsner, T.

10.1101/234500 — systems biology — Posted on 2017-12-15

704 The Variability Puzzle in Human Memory

Kahana, M. J.; Aggarwal, E.; Phan, T. D.

10.1101/235127 — neuroscience — Posted on 2017-12-15

705 SLAM-ITseq: Sequencing cell type-specific transcriptomes without cell sorting

Matsushima, W.; Herzog, V. A.; Neumann, T.; Gapp, K.; Zuber, J.; Ameres, S. L. L.; Miska, E. A.

10.1101/235093 — molecular biology — Posted on 2017-12-15

706 Whole genome data reveal the complex history of a diverse ecological community

Bunnefeld, L.; Hearn, J.; Stone, G. N.; Lohse, K.

10.1101/233759 — ecology — Posted on 2017-12-15

707 A mathematical approach to differentiate spontaneous and induced evolution to drug resistance during cancer treatment

Greene, J. M.; Gevertz, J. L.; Sontag, E. D.

10.1101/235150 — cancer biology — Posted on 2017-12-15

708 Orientation-dependent Dxz4 contacts shape the 3D structure of the inactive X chromosome

Bonora, G.; Deng, X.; Fang, H.; Ramani, V.; Qui, R.; Berletch, J.; Filippova, G. N.; Duan, Z.; Schendure, J.; Noble, W. S.; Disteche, C. M.

10.1101/165340 — molecular biology — Posted on 2017-12-15

709 A fungal pathogen that robustly manipulates the behavior of Drosophila melanogaster in the laboratory

Elya, C.; Lok, T. C.; Spencer, Q. E.; McCausland, H.; Martinez, C. C.; Eisen, M. B.

10.1101/232140 — animal behavior and cognition — Posted on 2017-12-15

710 Phase-tuned neuronal firing encodes human contextual representations for navigational goals

Watrous, A. J.; Miller, J.; Qasim, S. E.; Fried, I.; Jacobs, J.

10.1101/202374 — neuroscience — Posted on 2017-12-15

711 The role of explicit strategies during reinforcement-based motor learning

Holland, P. J.; Codol, O.; Galea, J. M.

10.1101/234534 — neuroscience — Posted on 2017-12-15

712 A simple mung bean infection model for studying the virulence of Pseudomonas aeruginosa

Garge, S.; Azimi, S.; Diggle, S. P.

10.1101/229757 — microbiology — Posted on 2017-12-15

713 LD Score regression as an estimator of confounding and genetic correlations in genome-wide association studies

Lee, J. J.; Chow, C. C.

10.1101/234815 — genetics — Posted on 2017-12-15

714 Coevolution of virulence and immunosuppression in multiple infections

Kamiya, T.; Mideo, N.; Alizon, S.

10.1101/149211 — evolutionary biology — Posted on 2017-12-15

715 Long-term community change through multiple rapid transitions in a desert rodent community

Christensen, E.; Harris, D.; Ernest, M.

10.1101/163931 — ecology — Posted on 2017-12-15

716 Germ layer specific regulation of cell polarity and adhesion: insight into the evolution of mesoderm

Salinas-Saavedra, M.; Rock, A. Q.; Martindale, M. Q.

10.1101/235267 — developmental biology — Posted on 2017-12-15

717 The IRE1a-XBP1 pathway promotes T helper cell differentiation by resolving secretory stress and accelerating proliferation

Pramanik, J.; Chen, X.; Kar, G.; Gomes, T.; Henriksson, J.; Miao, Z.; Natarajan, K.; McKenzie, A. N. J.; Mahata, B.; Teichmann, S. A.

10.1101/235010 — cell biology — Posted on 2017-12-15

718 SUPPA2 provides fast, accurate, and uncertainty-aware differential splicing analysis across multiple conditions

Trincado, J. L.; Entizne, J. C.; Hysenaj, G.; Singh, B.; Skalic, M.; Elliott, D. J.; Eyras, E.

10.1101/086876 — bioinformatics — Posted on 2017-12-15

719 A neural model of working memory

Manohar, S. G.; Zokaei, N.; Fallon, S. J.; Vogels, T.; Husain, M.

10.1101/233007 — neuroscience — Posted on 2017-12-15

720 Pharmacological manipulation of olfactory bulb granule cell excitability modulates beta oscillations: Testing a model

Osinski, B.; Kim, A.; Xiao, W.; Mehta, N. M.; Kay, L. M.

10.1101/234625 — neuroscience — Posted on 2017-12-15

721 Ubiquitin ligase LNX1 is a major regulator of glycine recapture by the presynaptic transporter GlyT2

Nunez, E.; Arribas-Gonzalez, E.; Lopez-Corcuera, B.; Aragon, C.; de Juan-Sanz, J.

10.1101/233213 — neuroscience — Posted on 2017-12-15

722 Visual Continuous Recognition Reveals Widespread Cortical Contributions to Scene Memory

Ellmore, T. M.; Reichert, C. P.; Ng, K.; Mei, N.

10.1101/234609 — neuroscience — Posted on 2017-12-15

723 The role of explicit strategies during reinforcement-based motor learning

Holland, P. J.; Codol, O.; Galea, J. M.

10.1101/234534 — neuroscience — Posted on 2017-12-15

724 Brain and psychological determinants of placebo pill response in chronic pain patients

Vachon-Presseau, E.; Berger, S. E.; Abdullah, T. B.; Huang, L.; Cecchi, G.; Griffith, J. W.; Schnitzer, T. J.; Apkarian, A. V.

10.1101/234575 — neuroscience — Posted on 2017-12-15

725 Associated valence impacts early visual processing of linguistic stimuli: Evidence from ERPs in a cross-modal learning paradigm

Bayer, M.; Grass, A.; Schacht, A.

10.1101/234864 — neuroscience — Posted on 2017-12-15

726 Multiplicative Updates for Optimization Problems with Dynamics

Kazemipour, A.; Babadi, B.; Wu, M.; Podgorski, K.; Druckmann, S.

10.1101/234526 — neuroscience — Posted on 2017-12-15

727 The first recorded incidence of Deinococcus radiodurans R1 biofilm formation and its implications in heavy metals bioremediation

Shukla, S. K.; Rao, T. S.

10.1101/234781 — microbiology — Posted on 2017-12-15

728 The Anorexia Nervosa Genetics Initiative: Overview and Methods

Thornton, L. M.; Munn-Chernoff, M. A.; Baker, J. H.; Jureus, A.; Parker, R.; Henders, A. K.; Larsen, J. T.; Petersen, L.; Watson, H. J.; Yilmaz, Z.; Kirk, K. M.; Gordon, S.; Leppa, V. M.; Martin, F. C.; Whiteman, D. C.; Olsen, C. M.; Werge, T.; Pedersen, N. L.; Kaye, W.; Bergen, A. W.; Halmi, K. A.; Strober, M.; Kaplan, A. S.; Woodside, D. B.; Mitchell, J.; Johnson, C. L.; Brandt, H.; Crawford, S.; Horwood, L. J.; Boden, J. M.; Pearson, J. F.; Duncan, L. E.; Grove, J.; Mattheisen, M.; Jordan, J.; Kennedy, M. A.; Birgegard, A.; Lichtenstein, P.; Norring, C.; Wade, T. D.; Montgomery, G.; Martin,

10.1101/234013 — genetics — Posted on 2017-12-15

729 Using an agent-based sexual-network model to guide mitigation efforts for controlling chlamydia

Azizi, A.; Dewar, J.; Hyman, J. M.

10.1101/233239 — epidemiology — Posted on 2017-12-15

730 Disentangling reporting and disease transmission using second order statistics

O'Dea, E. B.; Drake, J. M.

10.1101/234658 — epidemiology — Posted on 2017-12-15

731 The cooperation of the haves and the have-nots

Bodenschatz, E.; Bae, A. J.; Prabhakara, K. H.

10.1101/234849 — biophysics — Posted on 2017-12-15

732 pytc: a python package for analysis of Isothermal Titration Calorimetry experiments

duvvuri, h.; wheeler, l. c.; Harms, M.

10.1101/234682 — biophysics — Posted on 2017-12-15

733 AWARENESS OF THE OUTCOME OF SELF-INITIATED POINTING ACTIONS

Gorea, A.; Granjon, L.; Sagi, D.

10.1101/234369 — animal behavior and cognition — Posted on 2017-12-15

734 Distractor inhibition contributes to retroactive attentional orienting within working memory: Evidence by lateralized event-related parameters of the EEG

Schneider, D.; Barth, A.; Haase, H.; Hickey, C.; Wascher, E.

10.1101/235069 — neuroscience — Posted on 2017-12-15

735 Migration, acculturation, and the maintenance of between-group cultural variation

Mesoudi, A.

10.1101/234807 — evolutionary biology — Posted on 2017-12-15

736 Integrative inference of subclonal tumour evolution from single-cell and bulk sequencing data

Malikic, S.; Jahn, K.; Kuipers, J.; Sahinalp, C.; Beerenwinkel, N.

10.1101/234914 — bioinformatics — Posted on 2017-12-15

737 Application of Atlas of Cancer Signalling Network in pre-clinical studies

Gomez, L. C. M.; Kondratova, M.; Ravel, J.-M.; Barillot, E.; Zinovyev, A.; Kuperstein, I.

10.1101/234823 — systems biology — Posted on 2017-12-15

738 Transmural unipolar electrogram morphology is achieved within 7s at the posterior left atrial wall during pulmonary vein isolation: VISITAG™ Module-based lesion assessment during radiofrequency ablation

Tomlinson, D.; Myles, M.; Stevens, K.; Streeter, A. J.

10.1101/234799 — physiology — Posted on 2017-12-15

739 Autophagy-dependent gut-to-yolk biomass conversion generates visceral polymorbidity in aging C. elegans

Ezcurra, M.; Benedetto, A.; Sornda, T.; Gilliat, A.; Au, C.; Zhang, Q.; van Schelt, S.; Petrache, A. L.; de la Guardia, Y.; Bar-Nun, S.; Tyler, E.; Wakelam, M. J.; Gems, D.

10.1101/234419 — physiology — Posted on 2017-12-15

740 Speed dependent descending control of innate freezing behavior in Drosophila melanogaster

Zacarias, R.; Namiki, S.; Card, G.; Vasconcelos, M. L.; Moita, M. A.

10.1101/234443 — neuroscience — Posted on 2017-12-15

741 Low beta power reflects perceived temporal probabilities for uncertain future events

Tavano, A.; Schroger, E.; Kotz, S. A.

10.1101/234070 — neuroscience — Posted on 2017-12-15

742 Multi-attribute Decision-making is Best Characterized by an Attribute-Wise Reinforcement Learning Model

Wang, S.; Rehder, B.

10.1101/234732 — neuroscience — Posted on 2017-12-15

743 The tortoise and the hare: interactions between reinforcement learning and working memory.

Collins, A. G.

10.1101/234724 — neuroscience — Posted on 2017-12-15

744 Central Role of Cognitive Control Networks in Weight Loss During Voluntary Calorie Restriction

Neseliler, S.; Hu, W.; Larcher, K.; Zacchia, M.; Dadar, M.; Scala, S. G.; Lamarche, M.; Zeighami, Y.; Stotland, S.; Larocque, M.; Marliss, E. B.; Dagher, A.

10.1101/234641 — neuroscience — Posted on 2017-12-15

745 Cultivation and genomic analysis of Candidatus Nitrosocaldus islandicus, a novel obligately thermophilic ammonia-oxidizing Thaumarchaeon

Daebeler, A.; Herbold, C.; Vierheilig, J.; Sedlacek, C. J.; Pjevac, P.; Albersten, M.; Kirkegaard, R. H.; de la Torre, J. R.; Daims, H.; Wagner, M.

10.1101/235028 — microbiology — Posted on 2017-12-15

746 Specificity of RNAi, LNA and CRISPRi as loss-of-function methods in transcriptional analysis

Stojic, L.; Lun, A.; Mangei, J.; Mascalchi, P.; Quarantotti, V.; Barr, A.; Bakal, C.; Marioni, J.; Gergely, F.; Odom, D.

10.1101/234930 — genomics — Posted on 2017-12-15

747 Heterogeneous cross-linked polymers to reconstruct chromatin reorganization during cell differentiation

Shukron, O.; Holcman, D.

10.1101/235051 — genomics — Posted on 2017-12-15

748 Effects of acclimation time and epigenetic mechanisms on growth of Neurospora in fluctuating environments

Kronholm, I.; Ketola, T.

10.1101/234971 — genetics — Posted on 2017-12-15

749 LD Score regression as an estimator of confounding and genetic correlations in genome-wide association studies

Lee, J. J.; Chow, C. C.

10.1101/234815 — genetics — Posted on 2017-12-15

750 Genetic evidence for shared risks across psychiatric disorders and related traits in a Swedish population twin sample

Taylor, M. J.; Martin, J.; Lu, Y.; Brikell, I.; Lundström, S.; Larsson, H.; Lichtenstein, P.

10.1101/234963 — genetics — Posted on 2017-12-15

751 Macrophage-derived granulin drives resistance to immune checkpoint inhibition in metastatic pancreatic cancer

Quaranta, V.; Rainer, C.; Nielsen, S. R.; Raymant, M.; Ahmed, M. S.; Engle, D.; Taylor, A.; Murray, T.; Campbell, F.; Palmer, D.; Tuveson, D.; Mielgo, A.; Schmid, M.

10.1101/234906 — cancer biology — Posted on 2017-12-15

752 An antisense RNA capable of modulating the expression of the tumour suppressor microRNA-34a

Serviss, J. T.; Richter, F. C.; Van den Eynden, J.; Andrews, N.; Houtman, M.; Vesterlund, M.; Schwarzmueller, L.; Johnsson, P.; Larsson Lekholm, E.; Grander, D.; Pokrovskaja Tamm, K.

10.1101/234310 — cancer biology — Posted on 2017-12-15

753 Real-time search of all bacterial and viral genomic data

Bradley, P.; den Bakker, H.; Rocha, E.; McVean, G.; Iqbal, Z.

10.1101/234955 — bioinformatics — Posted on 2017-12-15

754 A methodology for unsupervised clustering using iterative pruning to capture fine-scale structure

Chaichoompu, K.; Abegaz, F.; Tongsima, S.; Shaw, P. J.; Sakuntabhai, A.; Cavadas, B.; Pereira, L.; Van Steen, K.

10.1101/234989 — bioinformatics — Posted on 2017-12-15

755 Comparative Qualitative Phosphoproteomics Analysis Identifies Shared Phosphorylation Motifs and Associated Biological Processes in Flowering Plants

Al-Momani, S.; Qi, D.; Ren, Z.; Jones, A.

10.1101/233668 — bioinformatics — Posted on 2017-12-15

756 Trait components of whole plant water use efficiency are defined by unique, environmentally responsive genetic signatures in the model C4 grass Setaria

Feldman, M. J.; Ellsworth, P. Z.; Fahlgren, N.; Gehan, M. A.; Cousins, A. B.; Baxter, I.

10.1101/234708 — plant biology — Posted on 2017-12-15

757 Pediatric Bone Age Assessment Using Deep Convolutional Neural Networks

Iglovikov, V.; Rakhlin, A.; Kalinin, A.; Shvets, A.

10.1101/234120 — pathology — Posted on 2017-12-15

758 Mapping neurons and brain regions underlying sensorimotor decisions and sequences in Drosophila

Jovanic, T.; Masson, J.-B.; Truman, J. W.; Zlatic, M.

10.1101/215236 — neuroscience — Posted on 2017-12-15

759 Super-Resolution Microscopy Reveals Structural Mechanisms Driving the Nanoarchitecture of a Viral Chromatin Tether

Grant, M. J.; Loftus, M. S.; Stoja, A. P.; Kedes, D. H.; Smith, M. M.

10.1101/181016 — microbiology — Posted on 2017-12-15

760 Transcription start site analysis reveals widespread divergent transcription in D. melanogaster and core promoter-encoded enhancer activities

Rennie, S.; Dalby, M.; Lloret-Llinares, M.; Bakoulis, S.; Dalager Vaagenso, C.; Jensen, T. H.; Andersson, R.

10.1101/221952 — genomics — Posted on 2017-12-15

761 Singleton Variants Dominate the Genetic Architecture of Human Gene Expression

Hernandez, R. D.; Uricchio, L. H.; Hartman, K.; Ye, J.; Dahl, A.; Zaitlen, N.

10.1101/219238 — evolutionary biology — Posted on 2017-12-15

762 Cdx4 regulates the onset of spinal cord neurogenesis

Joshi, P.; Darr, A. J.; Skromne, I.

10.1101/177469 — developmental biology — Posted on 2017-12-15

763 Self-organization of a functional human organizer by combined WNT and NODAL signalling

Martyn, I.; Kanno, T.; Ruzo, A.; Siggia, E.; Brivanlou, A.

10.1101/234633 — developmental biology — Posted on 2017-12-15

764 Dual spindle formation in zygotes keeps parental genomes apart in early mammalian embryos

Reichmann, J.; Nijmeijer, B.; Hossain, M. J.; Eguren, M.; Schneider, I.; Politi, A. Z.; Roberti, M. J.; Hufnagel, L.; Hiiragi, T.; Ellenberg, J.

10.1101/198275 — cell biology — Posted on 2017-12-15

765 Interaction of lecithin-cholesterol acyltransferase with lipid surfaces and apolipoprotein A-I derived peptides: implications for the cofactor mechanism of apolipoprotein A-I

Casteleijn, M. G.; Parkkila, P.; Viitala, T.; Koivuniemi, A.

10.1101/225037 — biophysics — Posted on 2017-12-15

766 Network perturbation analysis of gene transcriptional profiles reveals protein targets and mechanism of action of drugs and influenza A viral infection

Noh, H.; Shoemaker, J. E.; Gunawan, R.

10.1101/175364 — bioinformatics — Posted on 2017-12-15

767 Differential Proportionality - A Normalization-Free Approach To Differential Gene Expression

Erb, I.; Quinn, T.; Lovell, D.; Notredame, C.

10.1101/134536 — bioinformatics — Posted on 2017-12-15

768 Language evolution to revolution: the jump from finite communication system with many words to infinite recursive language was associated with acquisition of mental synthesis

Vyshedskiy, A.

10.1101/166520 — evolutionary biology — Posted on 2017-12-15

769 Partial ablation of the orexin field induces a subnarcoleptic phenotype in a conditional mouse model of orexin neurodegeneration

Black, S. W.; Sun, J. D.; Santiago, P.; Laihsu, A.; Kimura, N.; Yamanaka, A.; Bersot, R.; Humphries, P. S.

10.1101/234765 — neuroscience — Posted on 2017-12-15

770 Melanin pathway genes regulate color and morphology of butterfly wing scales

Matsuoka, Y.; Monteiro, A.

10.1101/234831 — genetics — Posted on 2017-12-15

771 Amplicon sequencing of the 16S-ITS-23S rRNA operon with long-read technology for improved phylogenetic classification of uncultured prokaryotes

Martijn, J.; Lind, A. E.; Spiers, I.; Juzokaite, L.; Bunikis, I.; Vinnere Pettersson, O.; Ettema, T. J. G.

10.1101/234690 — microbiology — Posted on 2017-12-15

772 Single-cell RNA-sequencing redefines blood cell type classification in mosquitoes

Severo, M. S.; Landry, J. J. M.; Lindquist, R. L.; Goosmann, C.; Brinkmann, V.; Collier, P.; Hauser, A. E.; Benes, V.; Teichmann, S. A.; Levashina, E. A.

10.1101/234492 — immunology — Posted on 2017-12-15

773 Sequence variation aware genome references and read mapping with the variation graph toolkit

Garrison, E.; Siren, J.; Novak, A. M.; Hickey, G.; Eizenga, J. M.; Dawson, E. T.; Jones, W.; Lin, M. F.; Paten, B.; Durbin, R.

10.1101/234856 — genomics — Posted on 2017-12-15

774 Transcription establishes microenvironments that organize euchromatin

Hilbert, L.; Sato, Y.; Kimura, H.; Jülicher, F.; Honigmann, A.; Zaburdaev, V.; Vastenhouw, N.

10.1101/234112 — cell biology — Posted on 2017-12-15

775 A tissue-specific self-interacting chromatin domain forms independently of enhancer-promoter interactions

Brown, J. M.; Roberts, N. A.; Graham, B.; Waithe, D.; Lagerholm, C.; Telenius, J. M.; De Ornellas, S.; Oudelaar, M.; Szczerbal, I.; Babbs, C.; Kassouf, M. T.; Hughes, J. R.; Higgs, D. R.; Buckle, V. J.

10.1101/234427 — cell biology — Posted on 2017-12-15

776 High accuracy measurements of nanometer-scale distances between fluorophores at the single-molecule level

Niekamp, S.; Sung, J.; Huynh, W.; Vale, R. D.; Stuurman, N.

10.1101/234740 — biophysics — Posted on 2017-12-15

777 Reliable detection of translational regulation with Ribo-seq

Chothani, S.; Adami, E.; Viswanathan, S.; Hubner, N.; Cook, S.; Schafer, S.; Rackham, O.

10.1101/234344 — bioinformatics — Posted on 2017-12-15

778 Prevalence and patterns of higher-order interactions

Tekin, E.; White, C.; Kang, T. M.; Singh, N.; Cruz-Loya, M.; Damoiseaux, R.; Savage, V. M.; Yeh, P. J.

10.1101/233312 — systems biology — Posted on 2017-12-14

779 A High Resolution Map of Meiotic Recombination in Cryptococcus Demonstrates Decreased Recombination in Unisexual Reproduction

Roth, C.; Sun, S.; Billmyre, R. B.; Heitman, J.; Magwene, P.

10.1101/234617 — genetics — Posted on 2017-12-14

780 Supergene evolution triggered by the introgression of a chromosomal inversion

Jay, P.; Whibley, A.; Frezal, L.; de Cara, A.; Nowell, R. W.; Mallet, J.; Dasmahapatra, K. K.; Joron, M.

10.1101/234559 — evolutionary biology — Posted on 2017-12-14

781 Rif1 prolongs the embryonic S phase at the Drosophila mid-blastula transition

Seller, C. A.; O'Farrell, P. H.

10.1101/231357 — developmental biology — Posted on 2017-12-14

782 Pediatric Bone Age Assessment Using Deep Convolutional Neural Networks

Iglovikov, V.; Rakhlin, A.; Kalinin, A.; Shvets, A.

10.1101/234120 — pathology — Posted on 2017-12-14

783 Neural classifiers with limited connectivity and recurrent readouts

Kushnir, L.; Fusi, S.

10.1101/157289 — neuroscience — Posted on 2017-12-14

784 The phylogeography of westslope cutthroat trout

Young, M. K.; McKelvey, K. S.; Jennings, T.; Carter, K.; Cronn, R.; Keeley, E.; Loxterman, J.; Pilgrim, K.; Schwartz, M. K.

10.1101/213363 — evolutionary biology — Posted on 2017-12-14

785 Ultrafast glutamate sensors resolve synaptic short-term plasticity

Helassa, N.; Durst, C.; Coates, C.; Kerruth, S.; Arif, U.; Schulze, C.; Wiegert, J. S.; Geeves, M.; Oertner, T.; Torok, K.

10.1101/233494 — neuroscience — Posted on 2017-12-14

786 The genomics of local adaptation in trees: Are we out of the woods yet?

Lind, B. M.; Menon, M.; Bolte, C. E.; Faske, T. M.; Eckert, A. J.

10.1101/203307 — evolutionary biology — Posted on 2017-12-14

787 The complement system supports normal postnatal development and gonadal function in both sexes

Lee, A.; Rusch, J.; Usmani, A.; Lima, A.; Wong, W.; Huang, N.; Lepamets, M.; Vigh-Conrad, K.; Worthington, R.; Magi, R.; Niederhuber, J.; Wu, X.; Atkinson, J.; Hess, R.; Conrad, D.

10.1101/233825 — developmental biology — Posted on 2017-12-14

788 Spin coated chitin films for biosensors and its analysis are depended on chitin-surface interactions

Casteleijn, M. G.; Richardson, D.; Parkkila, P.; Granqvist, N.; Urtti, A.; Viitala, T.

10.1101/215566 — biophysics — Posted on 2017-12-14

789 A clinical-anatomical signature of Parkinson’s Disease identified with partial least squares and magnetic resonance imaging

Zeighami, Y.; Fereshtehnejad, S.-M.; Dadar, M.; Collins, D. L.; Postuma, R. B.; Misic, B.; Dagher, A.

10.1101/168989 — neuroscience — Posted on 2017-12-14

790 Subtle Changes in Clonal Dynamics Underlie the Age-Related Decline in Neurogenesis

Bast, L.; Calzolari, F.; Strasser, M.; Hasenauer, J.; Theis, F.; Ninkovic, J.; Marr, C.

10.1101/206938 — neuroscience — Posted on 2017-12-14

791 Folic acid prevents C. elegans folate deficiency indirectly via bacterial uptake of a breakdown product: a route that can also increase bacterial toxicity and ageing

Maynard, C.; Cummins, I.; Green, J.; Weinkove, D.

10.1101/230227 — microbiology — Posted on 2017-12-14

792 Dual spindle formation in zygotes keeps parental genomes apart in early mammalian embryos

Reichmann, J.; Nijmeijer, B.; Hossain, M. J.; Eguren, M.; Schneider, I.; Politi, A. Z.; Roberti, M. J.; Hufnagel, L.; Hiiragi, T.; Ellenberg, J.

10.1101/198275 — cell biology — Posted on 2017-12-14

793 JASPAR RESTful API: accessing JASPAR data from any programming language

Khan, A.; Mathelier, A.

10.1101/160184 — bioinformatics — Posted on 2017-12-14

794 Predictions of Protein-Protein Interactions in Schistosoma mansoni

White Bear, J.; Sali, A.

10.1101/233072 — bioinformatics — Posted on 2017-12-14

795 Molecular structures enumeration and virtual screening in the chemical space with RetroPath2.0

Koch, M.; Duigou, T.; Carbonell, P.; Faulon, J.-L.

10.1101/158147 — systems biology — Posted on 2017-12-14

796 Characterisation Of Trichuris muris Secreted Proteins And Extracellular Vesicles Provides New Insights Into Host-Parasite Communication

Eichenberger, R. M.; Talukder, M. H.; Field, M.; Wangchuk, P.; Giacomin, P.; Loukas, A.; Sotillo, J.

10.1101/128629 — microbiology — Posted on 2017-12-14

797 The grayling genome reveals selection on gene expression regulation after whole genome duplication

Varadharajan, S.; Sandve, S. R.; Gillard, G.; Torresen, O. K.; Mulugeta, T.; Hvidsten, T. R.; Lien, S.; Vollestad, L. A.; Jentoft, S.; Nederbragt, A. J.; Jakobsen, K. S.

10.1101/153270 — genomics — Posted on 2017-12-14

798 The species problem from the modeler’s point of view

Manceau, M.; Lambert, A.

10.1101/075580 — evolutionary biology — Posted on 2017-12-14

799 Coevolution of virulence and immunosuppression in multiple infections

Kamiya, T.; Mideo, N.; Alizon, S.

10.1101/149211 — evolutionary biology — Posted on 2017-12-14

800 Rif1 prolongs the embryonic S phase at the Drosophila mid-blastula transition

Seller, C. A.; O'Farrell, P. H.

10.1101/231357 — developmental biology — Posted on 2017-12-14

801 The Cell Cycle Browser: an interactive tool for visualizing, simulating, and perturbing cell cycle progression

Borland, D.; Yi, H.; Grant, G. D.; Kedziora, K. M.; Chao, H. X.; Haggerty, R. A.; Kumar, J.; Wolff, S. C.; Cook, J. G.; Purvis, J. E.

10.1101/234039 — systems biology — Posted on 2017-12-14

802 Skilled lipreaders read and listen to lips

Saalasti, S.; Alho, J.; Lahnakoski, J.; Bacha-Trams, M.; Glerean, E.; Jaaskelainen, I.; Hasson, U.; Sams, M.

10.1101/233676 — neuroscience — Posted on 2017-12-14

803 Isolation of nucleic acids from low biomass samples: detection and removal of sRNA contaminants

Heintz-Buschart, A.; Yusuf, D.; Kaysen, A.; Etheridge, A.; Fritz, J. V.; May, P.; de Beaufort, C.; Upadhyaya, B. B.; Ghosal, A.; Galas, D. J.; Wilmes, P.

10.1101/232975 — molecular biology — Posted on 2017-12-14

804 GORAB, a Golgi protein required for centriole structure and duplication

Kovacs, L.; Chao-Chu, J.; Schneider, S.; Gottardo, M.; Tzolovsky, G.; Dzhindzhev, N. S.; Riparbelli, M. G.; Callaini, G.; Glover, D. M.

10.1101/232272 — cell biology — Posted on 2017-12-14

805 Host_microbe_mapper allows to analyse and interpret the expression of dual RNA-seq measurements and reveals potential microbial contaminations in the data

Nussbaumer, T.

10.1101/234278 — bioinformatics — Posted on 2017-12-14

806 KCC2-dependent Steady-state Intracellular Chloride Concentration and pH in Cortical Layer 2/3 Neurons of Anesthetized and Awake Mice

Boffi, J. C.; Knabbe, J.; Kaiser, M.; Kuner, T.

10.1101/234476 — neuroscience — Posted on 2017-12-14

807 Simulating Pedigrees Ascertained for Multiple Disease-Affected Relatives

Nieuwoudt, C. M.; Jones, S. J.; Brooks-Wilson, A.; Graham, J.

10.1101/234153 — genetics — Posted on 2017-12-14

808 Genetic dissection of cyclic pyranopterin monophosphate biosynthesis in plant mitochondria

Kruse, I.; Maclean, A. E.; Hill, L.; Balk, J.

10.1101/234450 — biochemistry — Posted on 2017-12-14

809 iterativeWGCNA: iterative refinement to improve module detection from WGCNA co-expression networks

Greenfest-Allen, E.; Cartailler, J.-P.; Magnuson, M. A.; Stoeckert, C. J.

10.1101/234062 — bioinformatics — Posted on 2017-12-14

810 Pediatric Bone Age Assessment Using Deep Convolutional Neural Networks

Iglovikov, V.; Rakhlin, A.; Kalinin, A.; Shvets, A.

10.1101/234120 — pathology — Posted on 2017-12-14

811 An accumulation-of-evidence task using visual pulses for mice navigating in virtual reality

Pinto, L.; Koay, S. A.; Engelhard, B.; Yoon, A. M.; Deverett, B.; Thiberge, S. Y.; Witten, I.; Tank, D. W.; Brody, C.

10.1101/232702 — neuroscience — Posted on 2017-12-14

812 Fractals in Action: An fMRI study on the Generation of new Hierarchical Levels in Motor Sequences

Martins, M. d. J. D.; Bianco, R.; Sammler, D.; Villringer, A.

10.1101/232942 — neuroscience — Posted on 2017-12-14

813 Probabilistic thresholding of functional connectomes: application to schizophrenia

Vasa, F.; Bullmore, E. T.; Patel, A. X.

10.1101/233510 — neuroscience — Posted on 2017-12-14

814 A cortical immune network map identifies a subset of human microglia involved in Tau pathology

Patrick, E.; Olah, M.; Taga, M.; Klein, H.-U.; Xu, J.; White, C. C.; Felsky, D.; Gaiteri, C.; Chibnik, L. B.; Mostafavi, S.; Schneider, J. A.; Bennett, D. A.; Bradshaw, E. M.; De Jager, P. L.

10.1101/234351 — neuroscience — Posted on 2017-12-14

815 Prevalence, mechanisms and comparison of detection methods of fosfomycin resistance in E. coli from urinary tract infections

Cottell, J. L.; Webber, M. A.

10.1101/234435 — microbiology — Posted on 2017-12-14

816 Hormone Control Regions mediate opposing steroid receptor-dependent genome organizations

Le Dily, F.; Vidal, E.; Cuartero, Y.; Quilez, J.; Nacht, S.; Vicent, G. P.; Sharma, P.; Verde, G.; Beato, M.

10.1101/233874 — genomics — Posted on 2017-12-14

817 Mechanisms that maintain coexistence of antibiotic sensitivity and resistance also promote high frequencies of multidrug resistance

Lehtinen, S.; Blanquart, F.; Lipsitch, M.; Fraser, C.; The Maela Pneumococcal Collaboration,

10.1101/233957 — evolutionary biology — Posted on 2017-12-14

818 Is the sky the limit? On the expansion threshold of a species’ range

Polechova, J.

10.1101/234377 — evolutionary biology — Posted on 2017-12-14

819 Selective effects of temperature on body mass depend on trophic interactions and network position

Weinbach, A.; Allhoff, K.; Thebault, E.; Massol, F.; Loeuille, N.

10.1101/233742 — ecology — Posted on 2017-12-14

820 Demographic causes of adult sex ratio variation and their consequences for parental cooperation

Eberhart-Phillips, L. J.; Kuepper, C.; Carmona-Isunza, M. C.; Vincze, O.; Zefania, S.; Cruz-Lopez, M.; Kosztolanyi, A.; Miller, T. E. X.; Barta, Z.; Cuthill, I.; Burke, T.; Szekely, T.; Hoffman, J. I.; Krueger, O.

10.1101/223941 — ecology — Posted on 2017-12-14

821 Patchiness and scale-free correlations: characterising criticality in ecosystems.

Sankaran, S.; Majumder, S.; Viswanathan, A.; Guttal, V.

10.1101/233429 — ecology — Posted on 2017-12-14

822 Alterations in Cell Motility, Proliferation, and Metabolism in Novel Models of Acquired Temozolomide Resistant Glioblastoma

Tiek, D. M.; Rone, J. D.; Graham, G. T.; Pannkuk, E. L.; Haddad, B. R.; Riggins, R. B.

10.1101/232447 — cancer biology — Posted on 2017-12-14

823 AntAngioCOOL: An R Package for Computational Detection of Anti-Angiogenic Peptides

Zahiri, J.; Khorsand-Ghaffari, B.; Shirali Hossein Zade, R.; Kargar, M.; Yousefi, A. A.

10.1101/233601 — bioinformatics — Posted on 2017-12-14

824 CLAN: the CrossLinked reads ANalysis tool

Zhong, C.; Zhang, S.

10.1101/233841 — bioinformatics — Posted on 2017-12-14

825 Long-range infra-sound acoustic signaling inhuman in vivo

Chang, X.; Zhang, L.; Wei, X.; Peng, Z.; Zhang, Z.; Liu, Z.; Li, P.-W.; Lai, P. T.; Chan, S. C.; Yang, E.

10.1101/233353 — physiology — Posted on 2017-12-14

826 Ultrasonic Neuromodulation Causes Widespread Cortical Activation via an Indirect Auditory Mechanism

Sato, T.; Shapiro, M.; Tsao, D.

10.1101/234211 — neuroscience — Posted on 2017-12-14

827 Premarin has opposing effects on spatial learning, neural activation and serum cytokine levels in middle age dependent on reproductive history

Galea, L.; Roes, M.; van den Brink, C.; Chow, C.; Mahmoud, R.; Lieblich, S.; Duarte-Guterman, P.

10.1101/234229 — neuroscience — Posted on 2017-12-14

828 Glucocorticoid receptor-mediated amygdalar metaplasticity underlies adaptive modulation of fear memory by stress

Inoue, R.; Abdou, K.; Hayashi-Tanaka, A.; Muramatsu, S.-i.; Mino, K.; Inokuchi, K.; Mori, H.

10.1101/233577 — neuroscience — Posted on 2017-12-14

829 Tracking temporal hazard in the human electroencephalogram using a forward encoding model

Herbst, S. K.; Fiedler, L.; Obleser, J.

10.1101/233551 — neuroscience — Posted on 2017-12-14

830 Ultrasound Produces Extensive Brain Activation via a Cochlear Pathway

Guo, H.; Hamilton, M.; Offutt, S. J.; Gloeckner, C. D.; Li, T.; Kim, Y.; Legon, W.; Alford, J. K.; Lim, H. H.

10.1101/233189 — neuroscience — Posted on 2017-12-14

831 Simultaneous Estimation of Population Receptive Field and Hemodynamic Parameters from Single Point BOLD Responses using Metropolis-Hastings Sampling

Adaszewski, S. R.; Slater, D.; Melie-Garcia, L.; Draganski, B.; Bogorodzki, P.

10.1101/233619 — neuroscience — Posted on 2017-12-14

832 A short, robust brain activation control task optimised for pharmacological fMRI studies

Harvey, J.-L.; Demetriou, L.; McGonigle, J.; Wall, M. B.

10.1101/233783 — neuroscience — Posted on 2017-12-14

833 Individual differences in fear learning: Specificity to trait-anxiety beyond other measures of negative affect, and mediation via amygdala activation

Sjouwerman, R.; Scharfenort, R.; Lonsdorf, T. B.

10.1101/233528 — neuroscience — Posted on 2017-12-14

834 Behavioral context determines network state and variability dynamics in monkey motor cortex

Riehle, A.; Brochier, T.; Nawrot, M. P.; Gruen, S.

10.1101/233684 — neuroscience — Posted on 2017-12-14

835 Drivers of antimicrobial resistance amongst intestinal Escherichia coli isolated from children in South Asia and sub-Saharan Africa

Ingle, D.; Levine, M. M.; Kotloff, K. L.; Holt, K. E.; Robins-Browne, R. M.

10.1101/233460 — microbiology — Posted on 2017-12-14

836 The genomic ancestry, landscape genetics, and invasion history of introduced mice in New Zealand

Veale, A. J.; Russell, J.; King, C.

10.1101/234245 — genomics — Posted on 2017-12-14

837 Leishmania naiffi and Leishmania guyanensis reference genomes highlight genome structure and gene content evolution in the Viannia subgenus

Coughlan, S.; Taylor, A. S.; Feane, E.; Sanders, M.; Schonian, G.; Cotton, J. A.; Downing, T.

10.1101/233148 — genomics — Posted on 2017-12-14

838 Examining the genetic influences of educational attainment and the validity of value-added measures of progress

Morris, T. T.; Davies, N. M.; Dorling, D.; Richmond, R. C.; Davey Smith, G.

10.1101/233635 — genetics — Posted on 2017-12-14

839 Gene networks underlying faster flowering induction in response to far-red light

Pazos Navarro, M.; Ribalta, F. M.; Hurgobin, B.; Croser, J. S.; Kaur, P.

10.1101/234161 — genetics — Posted on 2017-12-14

840 A temperature dependent trophic cascade modifies temperature dependence of ecosystem function

Garzke, J.; Connor, S. J.; Sommer, U.; O'Connor, M. I.

10.1101/233916 — ecology — Posted on 2017-12-14

841 Template-based prediction of vigilance fluctuations in resting-state fMRI

Falahpour, M.; Chang, C.; Wong, C. W.; Liu, T.

10.1101/234179 — neuroscience — Posted on 2017-12-14

842 A new method to isolate algal species from mix algal culture

Ali, E.; Mirza, S. S.

10.1101/233981 — microbiology — Posted on 2017-12-14

843 Verbalizing phylogenomic conflict: Representation of node congruence across competing reconstructions of the neoavian explosion

Franz, N.; Musher, L.; Brown, J.; Yu, S.; Ludaescher, B.

10.1101/233973 — evolutionary biology — Posted on 2017-12-14

844 Intrinsic neuronal dynamics predict distinct functional roles during working memory

Wasmuht, D. F.; Spaak, E.; Buschman, T. J.; Miller, E. K.; Stokes, M. G.

10.1101/233171 — neuroscience — Posted on 2017-12-14

845 Reconciling persistent and dynamic hypotheses of working memory coding in prefrontal cortex

Cavanagh, S. E.; Towers, J. P.; Wallis, J. D.; Hunt, L. T.; Kennerley, S. W.

10.1101/231506 — neuroscience — Posted on 2017-12-14

846 The Escherichia coli CpxAR system does not sense surface contact

Kimkes, T. E. P.; Heinemann, M.

10.1101/233999 — microbiology — Posted on 2017-12-14

847 The Role of Conformational Dynamics in Abacavir-Induced Hypersensitivity Syndrome

Kass, I.; Fodor, J.; Riley, B. T.; Buckle, A. M.; Borg, N. A.

10.1101/234260 — immunology — Posted on 2017-12-14

848 Reticular adhesions: A new class of adhesion complex that mediates cell-matrix attachment during mitosis

Lock, J. G.; Jones, M. C.; Askari, J. A.; Gong, X.; Oddone, A.; Olofsson, H.; Goransson, S.; Lakadamyali, M.; Humphries, M. J.; Stromblad, S.

10.1101/234237 — cell biology — Posted on 2017-12-14

849 Identification of a novel caspase cleavage site in huntingtin that regulates mutant huntingtin clearance.

Martin, D. D. O.; Schmidt, M. E.; Nguyen, Y. T.; Lazic, N.; Hayden, M. R.

10.1101/232827 — neuroscience — Posted on 2017-12-13

850 The impact of HIV-1 within-host evolution on transmission dynamics

Theys, K.; Libin, P.; Pineda-Pena, A.-C.; Nowe, A.; Vandamme, A.-M.; Abecasis, A.

10.1101/233130 — microbiology — Posted on 2017-12-13

851 Dynamic protein aggregation regulates bacterial dormancy depth critical for antibiotic tolerance

Pu, Y.; Li, Y.; Ma, Q.; Tian, T.; Zhao, Z.; McVey, A.; Bai, F.

10.1101/233890 — microbiology — Posted on 2017-12-13

852 FGFs are orchestra conductors of Shh-dependent oligodendroglial fate specification in the ventral spinal cord

Farreny, M.-A.; Agius, E.; Bel-Vialar, S.; Escalas, N.; Khouri-Farah, N.; Soukkarieh, C.; Pituello, F.; Cochard, P.; Soula, C.

10.1101/233775 — developmental biology — Posted on 2017-12-13

853 An eye-targeted double-RNAi screen reveals negative roles for the Archipelago ubiquitin ligase and CtBP in Drosophila Dpp BMP2/4 signaling.

Eusebio, N.; Pereira, P. S.

10.1101/233791 — developmental biology — Posted on 2017-12-13

854 The complement system supports normal postnatal development and gonadal function in both sexes

Conrad, D.; Lee, A.; Rusch, J.; Usmani, A.; Lima, A.; Wong, W.; Huang, N.; Lepamets, M.; Vigh-Conrad, K.; Worthington, R.; Magi, R.; Niederhuber, J.; Wu, X.; Atkinson, J.; Hess, R.

10.1101/233825 — developmental biology — Posted on 2017-12-13

855 Growth control through regulation of insulin-signaling by nutrition-activated steroid hormone

Buhler, K.; Clements, J.; Winant, M.; Vulsteke, V.; Callaerts, P.

10.1101/234088 — developmental biology — Posted on 2017-12-13

856 mRNA structure determines specificity of a polyQ-driven phase separation

Langdon, E. M.; Billingsly, P.; Ghanbari Niaki, A.; McLaughlin, G.; Weidmann, C.; Gerbich, T.; Termini, C. M.; Weeks, K. M.; Myong, S.; Gladfelter, A.

10.1101/233817 — cell biology — Posted on 2017-12-13

857 Neural network control of focal position during time-lapse microscopy of cells

Wei, L.; Roberts, E.

10.1101/233940 — cell biology — Posted on 2017-12-13

858 Parental legacy, demography, and introgression influenced the evolution of the two subgenomes of the tetraploid Capsella bursa-pastoris (Brassicaceae)

Kryvokhyzha, D.; Salcedo, A.; Eriksson, M. C.; Duan, T.; Tawari, N.; Chen, J.; Guerrina, M.; Kreiner, J. M.; Kent, T. V.; Lagercrantz, U.; Stinchcombe, J. R.; Glemin, S.; Wright, S. I.; Lascoux, M.

10.1101/234096 — evolutionary biology — Posted on 2017-12-13

859 The transcriptome of Paraphelidium tribonemae illuminates the ancestry of Fungi and Opisthosporidia

Torruella, G.; Grau-Bove, X.; Moreira, D.; Karpov, S. A.; Burns, J.; Sebe-Pedros, A.; Volcker, E.; Lopez-Garcia, P.

10.1101/233882 — evolutionary biology — Posted on 2017-12-13

860 Carriers of mitochondrial DNA macrohaplogroup L3 basic lineages migrated back to Africa from Asia around 70,000 years ago.

Cabrera, V. M.; Marrero Rodriguez, J. P.; Abu-Amero, K. K.; Larruga, J. M.

10.1101/233502 — evolutionary biology — Posted on 2017-12-13

861 Geometry of the sample frequency spectrum and the perils of demographic inference

Rosen, Z.; Bhaskar, A.; Roch, S.; Song, Y. S.

10.1101/233908 — evolutionary biology — Posted on 2017-12-13

862 The genomic and ecological context of hybridization affect the probability that symmetrical incompatibilities drive hybrid speciation.

Comeault, A. A.

10.1101/233924 — evolutionary biology — Posted on 2017-12-13

863 netSmooth: Network-smoothing based imputation for single cell RNA-seq

Ronen, J.; Akalin, A.

10.1101/234021 — bioinformatics — Posted on 2017-12-13

864 Transcriptional profiling reveals extraordinary diversity among skeletal muscle tissues

Terry, E. E.; Zhang, X.; Hoffmann, C.; Hughes, L. D.; Lewis, S. A.; Li, J.; Riley, L.; Lahens, N. F.; Gong, M.; Andrade, F.; Esser, K. A.; Hughes, M. E.

10.1101/216317 — systems biology — Posted on 2017-12-13

865 Using Temporal ICA to Selectively Remove Global Noise While Preserving Global Signal in Functional MRI Data

Glasser, M. F.; Coalson, T. S.; Bijsterbosch, J. D.; Harrison, S. J.; Harms, M. P.; Anticevic, A.; Van Essen, D. C.; Smith, S. M.

10.1101/193862 — neuroscience — Posted on 2017-12-13

866 Visual evidence accumulation guides decision-making in unrestrained mice

Odoemene, O.; Pisupati, S.; Nguyen, H.; Churchland, A. K.

10.1101/195792 — neuroscience — Posted on 2017-12-13

867 Comparing neurotransmitter metabolism in the brain of patients with symptomatic and asymptomatic Alzheimer’s disease and healthy individuals

Snowden, S. G.; Ebshiana, A.; Hye, A.; Yang, A.; Olga, P.; Richard, O.; John, T.; Cristina, L.-Q.; Madhav, T.

10.1101/220699 — neuroscience — Posted on 2017-12-13

868 A simple mung bean infection model for studying the virulence of Pseudomonas aeruginosa

Garge, S.; Azimi, S.; Diggle, S. P.

10.1101/229757 — microbiology — Posted on 2017-12-13

869 Engagement rules that underpin DBL-DARC interactions for ingress of Plasmodium knowlesi and Plasmodium vivax into human erythrocytes

Yogavel, M.; Jamwal, A.; Gupta, S.; Sharma, A.

10.1101/147769 — microbiology — Posted on 2017-12-13

870 Conserved microRNA targeting reveals preexisting gene dosage sensitivities that shaped amniote sex chromosome evolution

Naqvi, S.; Bellott, D. W.; Lin, K. S.; Page, D. C.

10.1101/118729 — genetics — Posted on 2017-12-13

871 A butterfly chromonome reveals selection dynamics during extensive and cryptic chromosomal reshuffling

Hill, J. A.; Neethiraj, R.; Rastas, P.; Clark, N.; Morehouse, N.; Celorio, M.; Cols, J. C.; Dircksen, H.; Meslin, C.; Sikkink, K.; Vives, M.; Vogel, H.; Wiklund, C.; Kingsolver, J.; Boggs, C.; Nylin, S.; Wheat, C.

10.1101/233700 — evolutionary biology — Posted on 2017-12-13

872 Modeling Epidemics: A Primer and Numerus Software Implementation

Getz, W. M.; Salter, R.; Muellerklein, O.; Yoon, H. S.; Tallam, K.

10.1101/191601 — epidemiology — Posted on 2017-12-13

873 Seasonal temperature variation influences climate suitability for dengue, chikungunya, and Zika transmission

Huber, J. H.; Childs, M. L.; Caldwell, J. M.; Mordecai, E. A.

10.1101/230383 — ecology — Posted on 2017-12-13

874 Cytoplasmic import and processing of mRNA amplify transcriptional bursts accounting for the majority of cellular noise

Hansen, M. M. K.; Desai, R. V.; Simpson, M. L.; Weinberger, L. S.

10.1101/222901 — cell biology — Posted on 2017-12-13

875 Trait-level paranoia shapes inter-subject synchrony in brain activity during an ambiguous social narrative

Finn, E. S.; Corlett, P. R.; Chen, G.; Bandettini, P. A.; Constable, R. T.

10.1101/231738 — neuroscience — Posted on 2017-12-13

876 Complemented palindrome small RNAs first discovered from SARS coronavirus

Liu, C.; Chen, Z.; Shen, W.; Yu, D.; Li, S.; Hu, Y.; Ji, H.; Bu, W.; Wang, Q.; Gao, S.

10.1101/185876 — genomics — Posted on 2017-12-13

877 Resolving the Full Spectrum of Human Genome Variation using Linked-Reads

Marks, P.; Garcia, S.; Martinez Barrio, A.; Belhocine, K.; Bernate, J.; Bharadwaj, R.; Bjornson, K.; Catalanotti, C.; Delaney, J.; Fehr, A.; Galvin, B.; Heaton, H.; Herschleb, J.; Hindson, C.; Holt, E.; Jabara, C. B.; Jett, S.; Keivanfar, N.; Kyriazopoulou-Panagiotopoulou, S.; Lek, M.; Lin, B.; Lowe, A.; Mahamdallie, S.; Maheshwari, S.; Makarewicz, T.; Marshall, J.; Meschi, F.; O'keefe, C.; Ordonez, H.; Patel, P.; Price, A.; Royall, A.; Ruark, E.; Seal, S.; Schnall-Levin, M.; Shah, P.; Williams, S.; Wu, I.; Wei Xu, A.; Rahman, N.; MacArthur, D.; Church, D. M.

10.1101/230946 — genomics — Posted on 2017-12-13

878 A major locus controls local adaptation and adaptive life history variation in a perennial plant

Wang, J.; Ding, J.; Tan, B.; Robinson, K. M.; Michelson, I. H.; Johansson, A.; Nystedt, B.; Scofield, D. G.; Nilsson, O.; Jansson, S.; Street, N. R.; Ingvarsson, P. K.

10.1101/178921 — evolutionary biology — Posted on 2017-12-13

879 The impact of surveillance and control on highly pathogenic avian influenza outbreaks in poultry in Dhaka division, Bangladesh

Hill, E. M.; House, T.; Dhingra, M. S.; Kalpravidh, W.; Morzaria, S.; Osmani, M. G.; Brum, E.; Yamage, M.; Kalam, M. A.; Prosser, D. J.; Takekawa, J. Y.; Xiao, X.; Gilbert, M.; Tildesley, M. J.

10.1101/193177 — epidemiology — Posted on 2017-12-13

880 Dependence of Intravoxel Incoherent Motion MR threshold b-value selection for separating perfusion and diffusion compartment and liver fibrosis diagnostic performance.

Li, Y.; Lu, P.-X.; Huang, H.; Leung, J.; Chen, W.; Wang, Y.-X.

10.1101/164129 — biophysics — Posted on 2017-12-13

881 Cell growth rate dictates the onset of glass to fluid-like transition and long time super-diffusion in an evolving cell colony

Malmi-Kakkada, A. N.; Li, X.; Samanta, H. S.; Sinha, S.; Thirumalai, D.

10.1101/174599 — biophysics — Posted on 2017-12-13

882 Distribution Shapes Govern the Discovery of Predictive Models for Gene Regulation

Munsky, B.; Li, G.; Fox, Z.; Shepherd, D. P.; Neuert, G.

10.1101/154401 — systems biology — Posted on 2017-12-13

883 Modeling systemic colorimetric parameters as a tool for processing images of clumps of toxic cyanobacteria targeted at their boundaries detection

Bespalov, Y.; Nosov, K.; Kabalyants, P. S.

10.1101/232413 — systems biology — Posted on 2017-12-13

884 Derivation and validation of a VISITAG™-guided contact force ablation protocol for pulmonary vein isolation

Tomlinson, D. R.

10.1101/232694 — physiology — Posted on 2017-12-13

885 Three-Dimensional Binocular Eye-Hand Coordination in Normal Vision and with Simulated Visual Impairment

Maiello, G.; Kwon, M.; Bex, P. J.

10.1101/232488 — neuroscience — Posted on 2017-12-13

886 Riemannian Geometry Boosts Representational Similarity Analyses of Dense Neural Time Series

Barachant, A.; King, J.-R.

10.1101/232710 — neuroscience — Posted on 2017-12-13

887 Tracking the Canonical Computations of Perceptual Processing in a Quasi-Continuous Sensory Flow

King, J.-R.; Wyart, V.

10.1101/232587 — neuroscience — Posted on 2017-12-13

Madan, C. R.

10.1101/232439 — neuroscience — Posted on 2017-12-13

889 Phasic Activation of Ventral Tegmental, but not Substantia Nigra, Dopamine Neurons Promotes Model-Based Pavlovian Reward Learning

Keiflin, R.; Pribut, H. J.; Shah, N. B.; Janak, P. H.

10.1101/232678 — neuroscience — Posted on 2017-12-13

890 Estimating the functional dimensionality of neural representations

Ahlheim, C.; Love, B. C.

10.1101/232454 — neuroscience — Posted on 2017-12-13

891 On the motion of spikes: a model of multifractality as observed in the neuronal activity of the human basal ganglia

Andres, D.

10.1101/223164 — neuroscience — Posted on 2017-12-13

892 Refining The Accuracy Of Validated Target Identification Through Coding Variant Fine-Mapping In Type 2 Diabetes

Mahajan, A.; Wessel, J.; Willems, S. M.; Zhao, W.; Robertson, N. R.; Chu, A. Y.; Gan, W.; Kitajima, H.; Taliun, D.; Rayner, N. W.; Guo, X.; Lu, Y.; Li, M.; Jensen, R. A.; Hu, Y.; Huo, S.; Lohman, K. K.; Zhang, W.; Cook, J. P.; Prins, B. P.; Flannick, J.; Grarup, N.; Trubetskoy, V. V.; Kravic, J.; Kim, Y. J.; Rybin, D. V.; Yaghootkar, H.; Müller-Nurasyid, M.; Meidtner, K.; Li-Gao, R.; Varga, T. V.; Marten, J.; Li, J.; Smith, A. V.; An, P.; Ligthart, S.; Gustafsson, S.; Malerba, G.; Demirkan, A.; Tajes, J. F.; Steinthorsdottir, V.; Wuttke, M.; Lecoeur, C.; Preuss, M.; Bielak, L. F.; Graf

10.1101/144410 — genetics — Posted on 2017-12-13

893 Coevolution of virulence and immunosuppression in multiple infections

Kamiya, T.; Mideo, N.; Alizon, S.

10.1101/149211 — evolutionary biology — Posted on 2017-12-13

894 Hormonal correlates of pathogen disgust: Testing the Compensatory Prophylaxis Hypothesis

Jones, B.; Hahn, A.; Fisher, C.; Wang, H.; Kandrik, M.; Lee, A. J.; Tybur, J.; DeBruine, L.

10.1101/156430 — animal behavior and cognition — Posted on 2017-12-13

895 A likelihood ratio test for changes in homeolog expression bias

Smith, R. D.; Kinser, T. J.; Conradi Smith, G. D.; Puzey, J. R.

10.1101/119438 — genomics — Posted on 2017-12-13

896 nQuire: A Statistical Framework For Ploidy Estimation Using Next Generation Sequencing

Weiss, C. L.; Pais, M.; Cano, L. M.; Kamoun, S.; Burbano, H. A.

10.1101/143537 — bioinformatics — Posted on 2017-12-13

897 Close encounters between infants and household members measured through wearable proximity sensors

Ozella, L.; Gesualdo, F.; Tizzoni, M.; Rizzo, C.; Pandolfi, E.; Campagna, I.; Tozzi, A. E.; Cattuto, C.

10.1101/232355 — epidemiology — Posted on 2017-12-13

898 A frailty index for UK Biobank participants

Williams, D. M.; Jylhava, J.; Pedersen, N. L.; Hagg, S.

10.1101/233692 — epidemiology — Posted on 2017-12-13

Alcala, R.; Morelos-Santana, E. D.; Cortes-Sotres, J. F.; Garza-Villarreal, E. A.; Sosa, A. L.; Gonzalez-Olvera, J. J.

10.1101/232546 — clinical trials — Posted on 2017-12-13

900 Reanalysis of global proteomic and phosphoproteomic data identified a large number of glycopeptides

Hu, Y.; Shah, P.; Clark, D. J.; Ao, M.; Zhang, H.

10.1101/233247 — systems biology — Posted on 2017-12-13

901 Control of mechanical pain hypersensitivity through ligand-targeted photoablation of TrkB positive sensory neurons

Dhandapani, R.; Arokiaraj, C. M.; Taberner, F. J.; Pacifico, P.; Raja, S.; Nocchi, L.; Portulano, C.; Franciosa, F.; Maffei, M.; Hussain, A. F.; Reis, F. d. C.; Reymond, L.; Perlas, E.; Garcovich, S.; Barth, S.; Johnsson, K.; Lechner, S. G.; Heppenstall, P. A.

10.1101/233452 — neuroscience — Posted on 2017-12-13

902 Ultrafast glutamate sensors resolve synaptic short-term plasticity

Helassa, N.; Durst, C.; Coates, C.; Kerruth, S.; Arif, U.; Schulze, C.; Wiegert, J. S.; Geeves, M.; Oertner, T.; Torok, K.

10.1101/233494 — neuroscience — Posted on 2017-12-13

903 A Quantitative Assessment of Prefrontal Cortex in Humans Relative to Nonhuman Primates

Donahue, C. J.; Glasser, M. F.; Preuss, T. M.; Rilling, J. K.; Van Essen, D. C.

10.1101/233346 — neuroscience — Posted on 2017-12-13

904 Understanding Biological Visual Attention Using Convolutional Neural Networks

Lindsay, G. W.; Miller, K. D.

10.1101/233338 — neuroscience — Posted on 2017-12-13

905 Characterizing the response to face pareidolia in human category-selective visual cortex

Wardle, S. G.; Seymour, K.; Taubert, J.

10.1101/233387 — neuroscience — Posted on 2017-12-13

906 Implicit reward associations impact face processing: Time-resolved evidence from event-related brain potentials and pupil dilations

Hammerschmidt, W.; Kagan, I.; Kulke, L.; Schacht, A.

10.1101/232538 — neuroscience — Posted on 2017-12-13

907 White matter correlates of hemi-face dominance in emotional expression

Ioannucci, S.; George, N.; Cerliani, L.; Thiebaut de Schotten, M.

10.1101/232926 — neuroscience — Posted on 2017-12-13

908 Robust detrending, rereferencing, outlier detection, and inpainting for multichannel data

de Cheveigne, A.; Arzounian, D.

10.1101/232892 — neuroscience — Posted on 2017-12-13

909 Archaeal community structure and underlying ecological processes in swine manure slurry

Kumari, P.; Choi, H. L.

10.1101/233445 — microbiology — Posted on 2017-12-13

910 LTRs activated by Epstein-Barr virus-induced transformation of B cells alter the transcriptome

Leung, A.; Trac, C.; Kato, H.; Natarajan, R.; Schones, D. E.

10.1101/233163 — genomics — Posted on 2017-12-13

911 ZMYND10 functions in a chaperone relay during axonemal dynein assembly

Mali, G. R.; Yeyati, P.; Mizuno, S.; Keighren, M. A.; zur Lage, P.; Garcia-Munoz, A.; Shimada, A.; Takeda, H.; Edlich, F.; Takahashi, S.; von Kriegsheim, A.; Jarman, A.; Mill, P.

10.1101/233718 — cell biology — Posted on 2017-12-13

912 Exploring the Genetics of Lesion and Nodal Resistance in Pea (Pisum sativum L.) to Sclerotinia sclerotiorum Using Genome-wide Association Studies and RNA-Seq

Chang, H.-X.; Sang, H.; Wang, J.; McPhee, K. E.; Zhuang, X.; Porter, L. D.; Chilvers, M.

10.1101/233288 — plant biology — Posted on 2017-12-13

913 Haploinsufficiency of Parkinsonism Gene SYNJ1 Contributes to Dopamine neuron Vulnerability in Aged Mice

Yue, Z.; Pan, P.-Y.; Sheehan, P.; Wang, Q.; Zhang, Y.; Wang, J.; El Gaamouch, F.; Zhu, L.; Cai, D.

10.1101/233585 — neuroscience — Posted on 2017-12-13

914 Gene editing of the multi-copy H2A.B gene family by a single pair of TALENS

Anuar, N. D.; Field, M.; Kurscheid, S.; Zhang, L.; Rebar, E.; Gregory, P.; Bowles, J.; Koopman, P.; Tremethick, D.; Soboleva, T.

10.1101/233379 — genomics — Posted on 2017-12-13

915 Structural disruption of genomic regions containing ultraconserved elements is associated with neurodevelopmental phenotypes

McCole, R. B.; Saylor, W.; Redin, C.; Fonseka, C. Y.; Brand, H.; Erceg, J.; Talkowski, M. E.; Wu, C.- t.

10.1101/233197 — genomics — Posted on 2017-12-13

916 Genomic heritability estimates in sweet cherry reveal non-additive genetic variance is relevant for industry-prioritized traits

Piaskowski, J.; Hardner, C.; Cai, L.; Zhao, Y.; Iezzoni, A.; Peace, C.

10.1101/233296 — genetics — Posted on 2017-12-13

917 Rapid adaptation in large populations with very rare sex: scalings and spontaneous oscillations

Pearce, M. T.; Fisher, D. S.

10.1101/233320 — evolutionary biology — Posted on 2017-12-13

918 Medaka population genome structure and demographic history unveiled via Genotyping-by-Sequencing

Katsumura, T.; Oda, S.; Mitani, H.; Oota, H.

10.1101/233411 — evolutionary biology — Posted on 2017-12-13

919 A butterfly chromonome reveals selection dynamics during extensive and cryptic chromosomal reshuffling

10.1101/233700 — evolutionary biology — Posted on 2017-12-13

920 Combination of mitochondrial tRNA and OXPHOS mutation reduces lifespan and physical condition in aged mice

Reichart, G.; Mayer, J.; Tokay, T.; Lange, F.; Johne, C.; Baltrusch, S.; Tiedge, M.; Fuellen, G.; Ibrahim, S.; Kohling, R.

10.1101/233593 — developmental biology — Posted on 2017-12-13

921 Tissue architectural cues drive the emergence of non-random trafficking of human tumor cells in the larval zebrafish

Paul, C. D.; Bishop, K.; Devine, A.; Wulftange, W. J.; Paine, E. L.; Staunton, J. R.; Shema, S.; Bliskovsky, V.; Miller Jenkins, L. M.; Morgan, N. Y.; Sood, R.; Tanner, K.

10.1101/233361 — biophysics — Posted on 2017-12-13

922 OCR-Stats: Robust estimation and statistical testing of mitochondrial respiration activities using Seahorse XF Analyzer

Yepez M, V. A.; Kremer, L. S.; Iuso, A.; Gusic, M.; Kopajtich, R.; Konarikova, E.; Nadel, A.; Wachutka, L.; Prokisch, H.; Gagneur, J.

10.1101/231522 — bioinformatics — Posted on 2017-12-13

923 Robust direct differentiation and maturation of human pluripotent stem cells to hepatocyte-like cells

Kamei, K.-i.; Yoshioka, M.; Terada, S.; Tokunaga, Y.; Chen, Y.

10.1101/232215 — bioengineering — Posted on 2017-12-13

924 Pre-mature senescence in the oldest leaves of low nitrate-grown Atxdh1 mutant uncovers a role for purine catabolism in plant nitrogen metabolism

Sagi, M.; Soltabayeva, A.; Srivastava, S.; Kurmanbayeva, A.; Bekturova, A.; Fluhr, R.

10.1101/233569 — biochemistry — Posted on 2017-12-13

925 Metagenomic signature of natural strongyle infection in susceptible and resistant horses

Clark, A.; Salle, G.; Ballan, V.; Reigner, F.; Meynadier, A.; Cortet, J.; Koch, C.; Riou, M.; Blanchard, A.; Mach, N.

10.1101/233015 — systems biology — Posted on 2017-12-13

926 A quantitative network modeling approach to evaluate the role of cytokine combinations on CD4+ T cell differentiation, partial polarization, and plasticity

Martinez-Sanchez, M. E.; Huerta, L.; Alvarez-Buylla, E.; Villarreal Lujan, C.

10.1101/232884 — systems biology — Posted on 2017-12-13

927 Global phylogenomics of multidrug-resistant Staphylococcus aureus sequence type 772: the Bengal Bay clone

Steinig, E. J.; Duchene, S.; Robinson, D. A.; Monecke, S.; Yokoyama, M.; Laabei, M.; Slickers, P.; Andersson, P.; Williamson, D.; Kearns, A.; Goering, R.; Dickson, E.; Ehricht, R.; Ip, M.; O'Sullivan, M. V.; Coombs, G. W.; Petersen, A.; Brennan, G.; Shore, A. C.; Coleman, D. C.; Pantosti, A.; de Lencastre, H.; Westh, H.; Kobayashi, N.; Heffernan, H.; Strommenger, B.; Layer, F.; Weber, S.; Aamot, H.; Skakni, L.; Peacock, S. J.; Sarovich, D.; Giffard, P.; Harris, S.; Parkhill, J.; Massey, R. C.; Holden, M. T.; Bentley, S. D.; Tong, S. Y.

10.1101/233395 — genomics — Posted on 2017-12-13

928 On negative heritability and negative estimates of heritability

Steinsaltz, D.; Dahl, A.; Wachter, K. W.

10.1101/232843 — genetics — Posted on 2017-12-13

929 Genetic landscapes reveal how human genetic diversity aligns with geography

Peter, B. M.; Petkova, D.; Novembre, J.

10.1101/233486 — evolutionary biology — Posted on 2017-12-13

930 The assessment of fishery status depends on the condition of fish habitats

Brown, C. J.; Broadley, A.; Adame, F.; Branch, T. A.; Turschwell, M.; Connolly, R. M.

10.1101/233478 — ecology — Posted on 2017-12-13

931 Application of the fluctuation theorem for non-invasive force measurement in living neuronal axons

Hayashi, K.; Tsuchizawa, Y.; Iwaki, M.; Okada, Y.

10.1101/233064 — biophysics — Posted on 2017-12-13

932 Hercules: a profile HMM-based hybrid error correction algorithm for long reads

Firtina, C.; Bar-Joseph, Z.; Alkan, C.; Cicek, A. E.

10.1101/233080 — bioinformatics — Posted on 2017-12-13

933 MAGpy: a reproducible pipeline for the downstream analysis of metagenome-assembled genomes (MAGs)

Stewart, R.; Auffret, M.; Snelling, T.; Roehe, R.; Watson, M.

10.1101/233544 — bioinformatics — Posted on 2017-12-13

934 Structurally conserved primate lncRNAs are transiently expressed during human cortical differentiation and influence cell type specific genes

Field, A. R.; Jacobs, F. M. J.; Fiddes, I. T.; Phillips, A. P. R.; Reyes-Ortiz, A. M.; LaMontagne, E.; Whitehead, L.; Meng, V.; Rosenkrantz, J. L.; Haeussler, M.; Katzman, S.; Salama, S. R.; Haussler, D.

10.1101/232553 — neuroscience — Posted on 2017-12-12

935 Predictions of Protein-Protein Interactions in Schistosoma Mansoni

White Bear, J.; Barkan, D. T.; Davis, F. P.; Sali, A.

10.1101/233072 — bioinformatics — Posted on 2017-12-12

936 Mir-132 controls beta cell proliferation and survival in mouse model through the PTEN/AKT/FOXO3 signaling

MZIAUT, H.; Henniger, G.; Ganss, K.; Hempel, S.; Wolk, S.; McChord, J.; Chowdhury, K. C.; Knoch, K. P.; Weitz, J.; Solimena, M.; Kersting, S.

10.1101/233098 — cell biology — Posted on 2017-12-12

937 Female mate choice is a reproductive isolating barrier in Heliconius butterflies

Southcott, L.; Kronforst, M.

10.1101/233270 — animal behavior and cognition — Posted on 2017-12-12

938 Copy number variation in fungi and its implications for wine yeast genetic diversity and adaptation

Steenwyk, J.; Rokas, A.

10.1101/233122 — microbiology — Posted on 2017-12-12

939 The landscape of actionable genomic alterations in cell-free circulating tumor DNA from 21,807 advanced cancer patients

Zill, O.; Banks, K.; Fairclough, S.; Mortimer, S.; Vowles, J.; Mokhtari, R.; Gandara, D. R.; Mack, P. C.; Odegaard, J.; Nagy, R.; Baca, A.; Eltoukhy, H.; Chudova, D.; Lanman, R.; Talasaz, A.

10.1101/233205 — cancer biology — Posted on 2017-12-12

940 Teaching data science fundamentals through realistic synthetic clinical cardiovascular data

Laderas, T.; Vasilevsky, N.; Pederson, B.; Haendel, M.; McWeeney, S.; Dorr, D.

10.1101/232611 — scientific communication and education — Posted on 2017-12-12

941 Female grant applicants are equally successful when peer reviewers assess the science, but not when they assess the scientist

Witteman, H. O.; Hendricks, M.; Straus, S.; Tannenbaum, C.

10.1101/232868 — scientific communication and education — Posted on 2017-12-12

942 Cognitive deficits and increases in creatine precursors in a brain-specific knockout of the creatine transporter gene Slc6a8

Udobi, K. C.; Kokenge, A. N.; Hautman, E.; Ullo, G.; Coene, J.; Williams, M. T.; Vorhees, C. V.; Mabondzo, A.; Skelton, M. R.

10.1101/196063 — neuroscience — Posted on 2017-12-12

943 Avoidance of toxic misfolding and protein stability do not explain the sequence constraints of highly expressed proteins

Plata, G.; Vitkup, D.

10.1101/168963 — evolutionary biology — Posted on 2017-12-12

944 Tuning Spatial Profiles of Selection Pressure to Modulate the Evolution of Resistance

De Jong, M. G.; Wood, K. B.

10.1101/230854 — evolutionary biology — Posted on 2017-12-12

945 The impact of surveillance and control on highly pathogenic avian influenza outbreaks in poultry in Dhaka division, Bangladesh

Hill, E. M.; House, T.; Dhingra, M. S.; Kalpravidh, W.; Morzaria, S.; Osmani, M. G.; Brum, E.; Yamage, M.; Kalam, M. A.; Prosser, D. J.; Takekawa, J. Y.; Xiao, X.; Gilbert, M.; Tildesley, M. J.

10.1101/193177 — epidemiology — Posted on 2017-12-12

946 Genetic and cellular sensitivity of Caenorhabditis elegans to the chemotherapeutic agent cisplatin

Garcia-Rodriguez, F. J.; Martinez-Fernandez, C.; Brena, D.; Nadal, E.; Boxem, M.; Honnen, S.; Miranda-Vizuete, A.; Villanueva, A.; Ceron, J.

10.1101/233023 — cancer biology — Posted on 2017-12-12

947 Neural circuits for long-range color filling-in

Gerardin, P.; Abbatecola, C.; Devinck, F.; Kennedy, H.; Dojat, M.; Knoblauch, K.

10.1101/223156 — neuroscience — Posted on 2017-12-12

948 Theta and alpha oscillations are traveling waves in the human neocortex

Zhang, H.; Watrous, A. J.; Patel, A.; Jacobs, J.

10.1101/218198 — neuroscience — Posted on 2017-12-12

949 Characterization of siderophore producing arsenic-resistant Staphylococcus sp. strain TA6 isolated from contaminated groundwater of Jorhat, Assam and its possible role in arsenic geocycle

Das, S.; Barooah, M.

10.1101/231241 — microbiology — Posted on 2017-12-12

950 Tuning Spatial Profiles of Selection Pressure to Modulate the Evolution of Resistance

De Jong, M. G.; Wood, K. B.

10.1101/230854 — evolutionary biology — Posted on 2017-12-12

951 De novo mutations in autism spectrum disorders and an empirical test of the neutral DNA model

Zhang, Y.; Huang, S.

10.1101/231944 — evolutionary biology — Posted on 2017-12-12

952 Antiretroviral treatment, prevention of transmission, and modeling the HIV epidemic: why the ART efficacy, coverage, and effectiveness parameters matter

Granich, R.; Gupta, S.; Wollmers, M.; Williams, B.

10.1101/228940 — epidemiology — Posted on 2017-12-12

953 Cytoplasmic import and processing of mRNA amplify transcriptional bursts accounting for the majority of cellular noise

Hansen, M. M. K.; Desai, R. V.; Simpson, M. L.; Weinberger, L. S.

10.1101/222901 — cell biology — Posted on 2017-12-12

954 HebbPlot: An intelligent tool for learning and visualizing chromatin mark signatures

Girgis, H. Z.; Velasco, A.; Reyes, Z. E.

10.1101/207670 — bioinformatics — Posted on 2017-12-12

955 Strong binding activity of few transcription factors is a major determinant of open chromatin

Wei, B.; Jolma, A.; Sahu, B.; Orre, L. M.; Zhong, F.; Zhu, F.; Kivioja, T.; Sur, I. K.; Lehtio, J.; Taipale, M.; Taipale, J.

10.1101/204743 — systems biology — Posted on 2017-12-12

956 Neural network models of the tactile system develop first-order units with spatially complex receptive fields

Zhao, C. W.; Daley, M. J.; Pruszynski, J. A.

10.1101/164954 — neuroscience — Posted on 2017-12-12

957 Visual working memory is independent of the cortical spacing between memoranda

Harrison, W. J.; Bays, P. M.

10.1101/216341 — neuroscience — Posted on 2017-12-12

958 Decoding the auditory brain with canonical component analysis

de Cheveigne, A.; Wong, D.; Di Liberto, G. M.; Hjortkjaer, J.; Slaney, M.; Lalor, E.

10.1101/217281 — neuroscience — Posted on 2017-12-12

959 Characterizing highly dynamic conformational states: the transcription bubble in RNAP-promoter open complex as an example

Lerner, E.; Ingargiola, A.; Weiss, S.

10.1101/188524 — biophysics — Posted on 2017-12-12

960 GEMBS -- high through-put processing for DNA methylation data from Whole Genome Bisulfite Sequencing (WGBS)

Merkel, A.; Fernandez-Callejo, M.; Casals, E.; Marco-Sola, S.; Schuyler, R.; Gut, I. G.; Heath, S. C.

10.1101/201988 — bioinformatics — Posted on 2017-12-12

961 Relative evolutionary rate inference in HyPhy with LEISR

Spielman, S. J.; Pond, S. L. K.

10.1101/206011 — bioinformatics — Posted on 2017-12-12

962 Space-by-time modular decomposition effectively describes whole-body muscle activity during upright reaching in various directions

Hilt, P. M.; Delis, I.; Pozzo, T.; Berret, B.

10.1101/155085 — neuroscience — Posted on 2017-12-12

963 Engrailed homeoprotein blocks degeneration in adult dopaminergic neurons through LINE-1 repression

Blaudin de The, F.-X.; Rekaik, H.; Peze-Heidsieck, E.; Massiani-Beaudoin, O.; Joshi, R. L.; Fuchs, J.; Prochiantz, A.

10.1101/164608 — neuroscience — Posted on 2017-12-12

964 Neural source dynamics of brain responses to continuous stimuli: speech processing from acoustics to comprehension

Brodbeck, C.; Presacco, A.; Simon, J. Z.

10.1101/182881 — neuroscience — Posted on 2017-12-12

965 Obesity/Type II Diabetes Promotes Function-Limiting Changes In Flexor Tendon Extracellular Matrix Organization That Are Not Reversed By Restoring Normal Metabolic Function

Studentsova, V.; Mora, K.; Glasner, M.; Buckley, M.; Loiselle, A.

10.1101/143149 — pathology — Posted on 2017-12-12

966 High-dimensional microbiome interactions shape host fitness

Gould, A. L.; Zhang, V.; Lamberti, L.; Jones, E. W.; Obadia, B.; Gavryushkin, A.; Carlson, J. M.; Beerenwinkel, N.; Ludington, W. B.

10.1101/232959 — microbiology — Posted on 2017-12-12

967 Study of the mitotic chromatin shows involvement of histone modifications in bookmarking and reveals nucleosome deposition patterns

Javasky, E.; Shamir, I.; Gandhi, S.; Egri, S.; Sandler, O.; Kaplan, N.; Jaffe, J. D.; Goren, A.; Simon, I.

10.1101/233056 — genomics — Posted on 2017-12-12

968 Cryptic genetic variation defines the adaptive evolutionary potential of enzymes

Baier, F.; Hong, N.; Yang, G.; Pabis, A.; Barrozo, A.; Carr, P. D.; Kamerlin, S. C.; Jackson, C. J.; Tokuriki, N.

10.1101/232793 — evolutionary biology — Posted on 2017-12-12

969 Who is the host of the host-associated microbiome? Colony-level dynamics overshadow individual-level characteristics in the fur microbiome of a social mammal, the Egyptian fruit-bat

kolodny, o.; Weinberg, M.; Reshef, L.; Harten, L.; Hefetz, A.; Gophna, U.; Feldman, M. W.; Yovel, Y.

10.1101/232934 — ecology — Posted on 2017-12-12

970 clusterTools: Proximity Searches For Functional Elements To Identify Putative Biosynthetic Gene Clusters

de los Santos, E. L.; Challis, G. L.

10.1101/119214 — bioinformatics — Posted on 2017-12-12

971 incR: a free new R package to analyse incubation behaviour

Capilla-Lasheras, P.

10.1101/232520 — animal behavior and cognition — Posted on 2017-12-12

972 An epigenetic breeding system in soybean for increased yield and stability

Kenchanmane Raju, S. K.; Shao, M.-R.; Sanchez, R.; Xu, Y.-Z.; Sandhu, A.; Graef, G.; Mackenzie, S.

10.1101/232819 — plant biology — Posted on 2017-12-12

973 Apparent diffusion in nucleus pulposus is associated with pain and mobility improvements after spinal mobilization for acute low back pain

Thiry, P.; Reumont, F.; Brismee, J.-M.; Dierick, F.

10.1101/232967 — physiology — Posted on 2017-12-12

974 Outbreak of invasive wound mucormycosis in a burn unit due to multiple strains of Mucor circinelloides f. circinelloides resolved by whole genome sequencing

Garcia-Hermoso, D.; Criscuolo, A.; Lee, S. c.; Legrand, M.; Chaouat, M.; Denis, B.; Lafaurie, M.; Rouveau, M.; Soler, C.; Schaal, J.-V.; Mimoun, M.; Mebazaa, A.; Heitman, J.; Francoise, D.; Brisse, S.; Stephane, B.; Alanio, A.

10.1101/233049 — microbiology — Posted on 2017-12-12

975 A revised understanding of Tribolium morphogenesis further reconciles short and long germ development

Benton, M. A.

10.1101/232751 — developmental biology — Posted on 2017-12-12

976 Structural basis for endotoxin neutralization and anti-inflammatory activity of thrombin-derived C-terminal peptides

Saravanan, R.; Holdbrook, D. A.; Petrlova, J.; Singh, S.; Berglund, N. A.; Choong, Y. K.; Bond, P. J.; Malmsten, M.; Schmidtchen, A.

10.1101/232876 — biophysics — Posted on 2017-12-12

977 A Genetic Pathway Composed of EDT1/HDG11, ERECTA, and E2Fa Loci Regulates Water Use Efficiency by Modulating Stomatal Density

Xiang, C.; Guo, X.-Y.; Wang, Y.; Xu, P.; Yu, G.-H.; Zhang, L.-Y.; Xiong, Y.

10.1101/232801 — plant biology — Posted on 2017-12-12

978 Elastic Multi-Scale Mechanisms: Computation and Biological Evolution

Diaz Ochoa, J. G.

10.1101/111666 — biophysics — Posted on 2017-12-12

979 The effect of single pyramidal neuron firing across and within layers in mouse V1

Meyer, J. F.; Golshani, P.; Smirnakis, S.

10.1101/232603 — neuroscience — Posted on 2017-12-12

980 Matrix-corrected mass spectrometry enables sensitive detection of food allergens and reveals widespread soy contamination of processed foods

Croote, D.; Braslavsky, I.; Quake, S. R.

10.1101/231266 — immunology — Posted on 2017-12-12

981 Transcriptome Analysis of Adult C. elegans Cells Reveals Tissue-specific Gene and Isoform Expression

Kaletsky, R.; Yao, V.; Williams, A.; Runnels, A. M.; King, S. B.; Tadych, A.; Zhou, S.; Troyanskaya, O. G.; Murphy, C. T.

10.1101/232728 — genomics — Posted on 2017-12-12

982 Large scale gene duplication affected the European eel (Anguilla anguilla) after the 3R teleost duplication

Rozenfeld, C.; Blanca, J.; Gallego Albiach, V.; Garcia-Carpintero, V.; Herranz-Jusdado, J. G.; Perez, L.; Asturiano, J. F.; Canizares, J.; Penaranda, D. S.

10.1101/232918 — genomics — Posted on 2017-12-12

983 Genome-wide discovery of somatic coding and regulatory variants in Diffuse Large B-cell Lymphoma

Arthur, S.; Jiang, A.; Grande, B.; Alcaide, M.; Mottok, A.; Ennishi, D.; Rushton, C.; Jessa, S.; Lat, P. K.; Pararajalingam, P.; Meissner, B.; Boyle, M.; Chong, L.; Lai, D.; Farinha, P.; Slack, G.; Davidson, J.; Bushell, K.; Shah, S.; Sen, D.; Jones, S.; Mungall, A. J.; Gascoyne, R.; Marra, M. A.; Steidl, C.; Connors, J.; Scott, D.; Morin, R. D.

10.1101/225870 — genomics — Posted on 2017-12-12

984 The Facultative Sex Coalescent with Crossing Over Recombination and Multi-Site Gene Conversion

Hartfield, M.; Wright, S.; Agrawal, A.

10.1101/232405 — evolutionary biology — Posted on 2017-12-12

985 Clinically Important sex differences in GBM biology revealed by analysis of male and female imaging, transcriptome and survival data

Yang, W.; Warrington, N. M.; Taylor, S. J.; Carrasco, E.; Singleton, K. W.; Wu, N.; Lathia, J. D.; Berens, M. E.; Kim, A. H.; Barnholtz-Sloan, J. S.; Swanson, K. R.; Luo, J.; Rubin, J. B.

10.1101/232744 — cancer biology — Posted on 2017-12-12

986 Pathway enrichment analysis of -omics data

Reimand, J.; Isserlin, R.; Voisin, V.; Kucera, M.; Tannus-Lopes, C.; Rostamianfar, A.; Wadi, L.; Meyer, M.; Wong, J.; Xu, C.; Merico, D.; Bader, G. D.

10.1101/232835 — bioinformatics — Posted on 2017-12-12

987 Identifying drug-gene interactions from CRISPR knockout screens with drugZ

Wang, G.; Zimmermann, M.; Mascall, K.; Lenoir, W. F.; Moffat, J.; Angers, S.; Durocher, D.; Hart, T.

10.1101/232736 — bioinformatics — Posted on 2017-12-12

988 Conditioning on a collider may induce spurious associations: Do the results of Gale et al. (2017) support a protective effect of neuroticism in population sub-groups?

Richardson, T. G.; Davey Smith, G.; Munafo, M. R.

10.1101/231969 — epidemiology — Posted on 2017-12-11

989 Human iPSC-derived RPE and retinal organoids reveal impaired alternative splicing of genes involved in pre-mRNA splicing in PRPF31 autosomal dominant retinitis pigmentosa

Buskin, A.; Zhu, L.; Chichagova, V.; Basu, B.; Mozaffari-Jovin, S.; Dolan, D.; Droop, A.; Collin, J.; Bronstein, R.; Mehrotra, S.; Farkas, M.; Hilgen, G.; White, K.; Hallam, D.; Bialas, K.; Chung, G.; Mellough, C.; Ding, Y.; Krasnogor, N.; Przyborski, S.; Al-Aama, J.; Alharthi, S.; Xu, Y.; Wheway, G.; Szymanska, K.; McKibbin, M.; Inglehearn, C. F.; Elliott, D. J.; Lindsay, S.; Ali, R. R.; Steel, D. H.; Armstrong, L.; Sernagor, E.; Pierce, E.; Luehrmann, R.; Grellscheid, S.-N.; Johnson, C. A.; Lako, M.

10.1101/232397 — genetics — Posted on 2017-12-11

990 Optimal Vaccination of a General Population Network via Genetic Algorithms

Sanders, L.

10.1101/227116 — epidemiology — Posted on 2017-12-11

991 Comparative analysis of kidney organoid and adult human kidney single cell and single nucleus transcriptomes

Wu, H.; Uchimura, K.; Donnelly, E.; Kirita, Y.; Morris, S. A.; Humphreys, B. D.

10.1101/232561 — developmental biology — Posted on 2017-12-11

992 ZMPSTE24 Missense Mutations that Cause Progeroid Diseases Decrease Prelamin A Cleavage Activity, Protein Stability, or Both

Spear, E.; Hsu, E.-T.; Nie, L.; Carpenter, E. P.; Hrycyna, C.; Michaelis, S.

10.1101/198069 — cell biology — Posted on 2017-12-11

993 Physical epistatic landscape of antibody binding affinity

Adams, R. M.; Kinney, J. B.; Walczak, A. M.; Mora, T.

10.1101/232645 — biophysics — Posted on 2017-12-11

994 Interdependence Theory of Tissue Failure: Bulk and Boundary Effects

Suma, D.; Acun, A.; Zorlutuna, P.; Vural, D.

10.1101/232595 — biophysics — Posted on 2017-12-11

995 Collective cell migration without proliferation: density determines cell velocity and wave velocity

Tlili, S.; Gauquelin, E.; Li, B.; Cardoso, O.; Ladoux, B.; Delanoe-Ayari, H.; Graner, F.

10.1101/232462 — biophysics — Posted on 2017-12-11

996 The preprophase band-associated kinesin-14 OsKCH2 is a processive minus-end-directed microtubule motor

Tseng, K.-F.; Wang, P.; Lee, Y.-R. J.; Bowen, J.; Gicking, A. M.; Guo, L.; Liu, B.; Qiu, W.

10.1101/232652 — biophysics — Posted on 2017-12-11

997 Cytoskeletal mechanisms of axonal contractility

Mutalik, S. P.; Joseph, J.; Pullarkat, P. A.; Ghose, A.

10.1101/227777 — biophysics — Posted on 2017-12-11

998 Routine Single Particle CryoEM Sample and Grid Characterization by Tomography

Noble, A. J.; Dandey, V. P.; Wei, H.; Brasch, J.; Chase, J.; Acharya, P.; Tan, Y. Z.; Zhang, Z.; Kim, L. Y.; Scapin, G.; Rapp, M.; Eng, E. T.; Rice, W. J.; Cheng, A.; Negro, C. J.; Shapiro, L.; Kwong, P. D.; Jeruzalmi, D.; des Georges, A.; Potter, C. S.; Carragher, B.

10.1101/230276 — biophysics — Posted on 2017-12-11

999 Comparative Annotation Toolkit (CAT) - simultaneous clade and personal genome annotation

Fiddes, I. T.; Armstrong, J.; Diekhans, M.; Nachtweide, S.; Kronenberg, Z. N.; Underwood, J. G.; Gordon, D.; Earl, D.; Keane, T.; Eichler, E. E.; Haussler, D.; Stanke, M.; Paten, B.

10.1101/231118 — bioinformatics — Posted on 2017-12-11

1000 Three classes of response elements for human PRC2 and MLL1/2-trithorax complexes

Du, J.; Kirk, B. D.; Zeng, J.; Ma, J.; Wang, Q.

10.1101/232686 — biochemistry — Posted on 2017-12-11

1001 Enhanced food-related responses in the ventral medial prefrontal cortex in orexin-deficient narcolepsy patients

van Holst, R. J.; Janssen, L. K.; van Mierlo, P.; Lammers, G. J.; Cools, R.; Overeem, S.; Aarts, E.

10.1101/191544 — neuroscience — Posted on 2017-12-11

1002 Neural circuits for long-range color filling-in

Gerardin, P.; Abbatecola, C.; Devinck, F.; Kennedy, H.; Dojat, M.; Knoblauch, K.

10.1101/223156 — neuroscience — Posted on 2017-12-11

1003 Algorithmic complexity of EEG for prognosis of neurodegeneration in idiopathic rapid eye movement behavior disorder (RBD)

Ruffini, G.; Ibanez, D.; Kroupi, E.; Gagnon, J.-F.; Montplaisir, J.; Postuma, R. B.; Castellano, M.; Soria-Frisch, A.

10.1101/200543 — neuroscience — Posted on 2017-12-11

1004 Genomic sequencing identifies secondary findings in a cohort of parent study participants

Thompson, M. L.; Finnila, C. R.; Bowling, K. M.; Brothers, K. B.; Neu, M.; Amaral, M. D.; Hiatt, S. M.; East, K. M.; Gray, D. E.; Lawlor, J. M. J.; Kelley, W. V.; Lose, E. J.; Rich, C. A.; Simmons, S.; Levy, S. E.; Myers, R. M.; Barsh, G. S.; Bebin, E. M.; Cooper, G. M.

10.1101/183186 — genomics — Posted on 2017-12-11

1005 Forecasting biodiversity in breeding birds using best practices

Harris, D. J.; Taylor, S.; White, E. P.

10.1101/191130 — ecology — Posted on 2017-12-11

1006 TORC1 inhibition as an immunotherapy to reduce infections in the elderly

Mannick, J. B.; Morris, M.; Hockey, H.-U. P.; Roma, G.; Beibel, M.; Kulmatycki, K.; Watkins, M.; Shavlakadze, T.; Zhou, W.; Quinn, D.; Glass, D. J.; Klickstein, L. B.

10.1101/230813 — clinical trials — Posted on 2017-12-11

1007 PhysiCell: an Open Source Physics-Based Cell Simulator for 3-D Multicellular Systems

Ghaffarizadeh, A.; Heiland, R.; Friedman, S. H.; Mumenthaler, S. M.; Macklin, P.

10.1101/088773 — systems biology — Posted on 2017-12-11

1008 Systemic Inflammation Mediates the Relationship between Obesity and Health Related Quality of Life

Wilkins, J.; Ghosh, P.; Vivar, J.; Chakraborty, B.; Ghosh, S.

10.1101/231720 — epidemiology — Posted on 2017-12-11

1009 BLAST-based validation of metagenomic sequence assignments

Bazinet, A. L.; Ondov, B. D.; Sommer, D. D.; Ratnayake, S.

10.1101/181636 — bioinformatics — Posted on 2017-12-11

1010 Exploration and generalization in vast spaces

Wu, C. M.; Schulz, E.; Speekenbrink, M.; Nelson, J. D.; Meder, B.

10.1101/171371 — animal behavior and cognition — Posted on 2017-12-11

1011 Inhibitory networks orchestrate the self-organization of computational function in cortical microcircuit motifs through STDP

Häusler, S.; Maass, W.

10.1101/228759 — neuroscience — Posted on 2017-12-11

1012 Human-specific NOTCH-like genes in a region linked to neurodevelopmental disorders affect cortical neurogenesis

Fiddes, I. T.; Lodewijk, G. A.; Mooring, M. M.; Bosworth, C. M.; Ewing, A. D.; Mantalas, G. L.; Novak, A. M.; van den Bout, A.; Bishara, A.; Rosenkrantz, J. L.; Lorig-Roach, R.; Field, A. R.; Haeussler, M.; Russo, L.; Bhaduri, A.; Nowakowski, T. J.; Pollen, A. A.; Dougherty, M. L.; Nuttle, X.; Addor, M.-C.; Zwolinski, S.; Katzman, S.; Kreigstein, A.; Eichler, E. E.; Salama, S. R.; Jacobs, F. M.; Haussler, D.

10.1101/221226 — neuroscience — Posted on 2017-12-11

1013 Leveraging heterogeneity for neural computation with fading memory in layer 2/3 cortical microcircuits

Duarte, R.; Morrison, A.

10.1101/230821 — neuroscience — Posted on 2017-12-11

1014 Genome-wide association analysis links multiple psychiatric liability genes to oscillatory brain activity

Smit, D. J.; Wright, M. J.; Meyers, J.; Martin, N.; Ho, Y. Y.; Malone, S. M.; Zhang, J.; Burwell, S. J.; Chorlian, D. B.; de Geus, E. J.; Denys, D.; Hansell, N. K.; Hottenga, J.-J.; McGue, M.; van Beijsterveldt, C. E.; Jahanshad, N.; Thompson, P. M.; Whelan, C. D.; Medland, S. E.; Porjesz, B.; Iacono, W. G.; Boomsma, D. I.

10.1101/232330 — genetics — Posted on 2017-12-11

1015 Results of follow-up experiments to "Odorant cues linked to social immunity induce lateralized antennal stimulation in honey bees (Apis mellifera L.)"

McAfee, A.; Collins, T. F.; Foster, L. J.

10.1101/232249 — molecular biology — Posted on 2017-12-11

1016 GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA, and mRNA data in GDC

Li, R.; Qu, H.; Wang, S.; Wei, J.; Zhang, L.; Ma, R.; Lu, J.; Zhu, J.; Zhong, W.-D.; Jia, Z.

10.1101/229799 — bioinformatics — Posted on 2017-12-11

1017 Suboptimal eye movements for seeing fine details

Agaoglu, M. N.; Sheehy, C. K.; Tiruveedhula, P.; Roorda, A.; Chung, S. T. L.

10.1101/220319 — neuroscience — Posted on 2017-12-11

1018 Cell-wall synthesis and ribosome maturation are co-regulated by an RNA switch in Mycobacterium tuberculosis

Schwenk, S.; Moores, A.; Nobeli, I.; McHugh, T. D.; Arnvig, K. B.

10.1101/232314 — molecular biology — Posted on 2017-12-11

1019 A semi-lethal CRISPR-Cas system permits DNA acquisition in Enterococcus faecalis

Hullahalli, K.; Rodrigues, M.; Nguyen, U.; Palmer, K.

10.1101/232322 — microbiology — Posted on 2017-12-11

1020 MapZ forms a stable ring structure that acts as a nano-track for FtsZ treadmilling in Streptococcus mutans

Li, Y.; Shao, S.; Xu, X.; Su, X.; Sun, Y.; Wei, S.

10.1101/218677 — microbiology — Posted on 2017-12-11

1021 Modulation of Prdm9-controlled meiotic chromosome asynapsis overrides hybrid sterility in mice

Gregorova, S.; Gergelits, V.; Chvatalova, I.; Bhattacharyya, T.; Valiskova, B.; Fotopulosova, V.; Jansa, P.; Wiatrowska, D.; Forejt, J.

10.1101/203505 — evolutionary biology — Posted on 2017-12-11

1022 Ultrastructural analysis of intracellular membrane and microtubule behavior during mitosis of Drosophila S2 cells

Strunov, A.; Boldyreva, L. V.; Andreyeva, E. N.; Pavlova, G. A.; Popova, J. V.; Razuvaeva, A. V.; Anders, A. F.; Renda, F.; Pindyurin, A. V.; Gatti, M.; Kiseleva, E.

10.1101/232199 — cell biology — Posted on 2017-12-11

1023 Altered transcription factor binding events predict personalized gene expression and confer insight into functional cis-regulatory variants

Shi, W.; Fornes, O.; Wasserman, W. W.

10.1101/228155 — bioinformatics — Posted on 2017-12-11

1024 Prometheus: omics portals for interkingdom comparative genomic analyses

Ko, G.; Jang, I.; Koo, N.; Park, S.-J.; Oh, S.-H.; Kim, M.-S.; Choi, J.-H.; Kim, H.; Sim, Y. M.; Byeon, I.; Kim, P.-G.; Kim, K. Y.; Han, G.; Yoon, J.-C.; Hong, Y.; Moon, K.-L.; Lee, B.; Ko, D.; Song, W.; Kim, Y.-M.

10.1101/232298 — bioinformatics — Posted on 2017-12-11

1025 Structure of BrlR reveals a potential pyocyanin binding site

Raju, H.; Sundararajan, R.; Sharma, R.

10.1101/188136 — biochemistry — Posted on 2017-12-11

1026 Characterizing the sub-second timescale strategies of fighting in zebrafish

Laan, A.; Iglesias-Julios, M.; de Polavieja, G.

10.1101/208918 — animal behavior and cognition — Posted on 2017-12-11

1027 VlbZIP30 of grapevine functions in drought tolerance via the abscisic acid core signaling pathway

Tu, M.; Wang, X.; Zhu, Y.; Wang, D.; Zhang, X.; Cui, Y.; Li, Y.; Gao, M.; Li, Z.; Wang, X.

10.1101/231811 — plant biology — Posted on 2017-12-11

1028 TRIF is a key inflammatory mediator of acute sickness behavior and cancer cachexia

Burfeind, K. G.; Zhu, X.; Levasseur, P. R.; Michaelis, K. A.; Norgard, M. A.; Marks, D. L.

10.1101/232280 — physiology — Posted on 2017-12-11

1029 A chemosensory switch couples genetic sex to behavioral valence

Fagan, K. A.; Luo, J.; Lagoy, R. C.; Schroeder, F. C.; Albrecht, D. R.; Portman, D. S.

10.1101/231936 — neuroscience — Posted on 2017-12-11

1030 Sparse graphical models for functional connectivity networks: best methods and the autocorrelation issue

Zhu, Y.; Cribben, I.

10.1101/128488 — neuroscience — Posted on 2017-12-11

1031 Toxoplasmosis, but not borreliosis, is associated with psychiatric disorders: A cross-sectional survey on 46 thousand of subjects

Flegr, J.; Horacek, J.

10.1101/231803 — neuroscience — Posted on 2017-12-11

1032 Molecular map of GNAO1-related disease phenotypes and reactions to treatment

Mihalek, I.; Park, M.; Kelly, M.; Waugh, J. L.; Poduri, A.; Bodamer, O.

10.1101/232058 — molecular biology — Posted on 2017-12-11

1033 Rarefaction, alpha diversity, and statistics

Willis, A.

10.1101/231878 — microbiology — Posted on 2017-12-11

1034 Data Analyses and new Findings Indicate a Primordial Neurotropic Pathogen Evolved into Infectious Causes of Several CNS Neurodegenerative Diseases

Todd, W. J.; Dubytska, L.; Mottram, P. J.; Wu, X.; Sokolova, Y. Y.

10.1101/232074 — microbiology — Posted on 2017-12-11

1035 Funmap2: an R package for QTL mapping using longitudinal phenotypes

Wang, N.; Chu, T.; Luo, J.; Wu, R.; Wang, Z.

10.1101/231928 — genetics — Posted on 2017-12-11

1036 Male success against con- and heterospecific competitors indicates a positive but modest role for sexual selection as driver of speciation

Davis, J. S.; Moyle, L. C.

10.1101/231852 — evolutionary biology — Posted on 2017-12-11

1037 Are Nonsense Alleles of Drosophila melanogaster Genes under Any Selection?

Potapova, N.; Andrianova, M.; Bazykin, G.; Kondrashov, A.

10.1101/232090 — evolutionary biology — Posted on 2017-12-11

1038 Two conceptions of evolutionary games: reductive vs effective

Kaznatcheev, A.

10.1101/231993 — evolutionary biology — Posted on 2017-12-11

1039 De novo mutations in autism spectrum disorders and an empirical test of the neutral DNA model

Huang, S.; Zhang, Y.

10.1101/231944 — evolutionary biology — Posted on 2017-12-11

1040 Predators or mutualists? Lack of dispersal distance benefits and small caching profits makes scatterhoarding rodents antagonists of oaks

Bogdziewicz, M.; Crone, E. E.; Zwolak, R.

10.1101/232264 — ecology — Posted on 2017-12-11

1041 Microtubule dynamics regulates mitochondrial fission

Mehta, K.; Chug, M. K.; Jhunjhunwala, S.; Ananthanarayanan, V.

10.1101/178913 — cell biology — Posted on 2017-12-11

1042 Global optimization approach for circular and chloroplast genome assembly

Francois, S.; Andonov, R.; Lavenier, D.; Djidjev, H.

10.1101/231324 — bioinformatics — Posted on 2017-12-11

1043 Computer-aided prediction of antigen presenting cell modulators for designing peptide-based vaccine adjuvants

Nagpal, G.; Chaudhary, K.; Agrawal, P.; Raghava, G. P. S.

10.1101/232025 — bioinformatics — Posted on 2017-12-11

1044 Large-scale structural variation detection in subterranean clover subtypes using optical mapping validated at nucleotide level

Yuan, Y.; Milec, z.; Bayer, P. E.; Vrana, J.; Dolezel, J.; Edwards, D.; Erskine, W.; Kaur, P.

10.1101/232132 — bioinformatics — Posted on 2017-12-11

1045 Remembrance of Inferences Past

Dasgupta, I.; Schulz, E.; Goodman, N. D.; Gershman, S. J.

10.1101/231837 — animal behavior and cognition — Posted on 2017-12-11

1046 Tools for engineering coordinated system behaviour in synthetic microbial consortia

Kylilis, N.; Stan, G.-B.; Polizzi, K. M.

10.1101/231597 — synthetic biology — Posted on 2017-12-11

1047 Differential default-mode network functional connectivity and morphometric changes in Alzheimers disease

Grajski, K. A.; Bressler, S. L.; Alzheimers Disease Neuroimaging Initiative (ADNI),

10.1101/232165 — neuroscience — Posted on 2017-12-11

1048 Value Encoding in the Globus Pallidus: fMRI reveals an interaction effect between reward and dopamine drive

Fiore, V. G.; Nolte, T.; Rigoli, F.; Smittenaar, P.; Gu, X.; Dolan, R. J.

10.1101/231910 — neuroscience — Posted on 2017-12-11

1049 Transplacental protection against asthma by maternal treatment with a bacterial-derived immunomodulatory agent

Mincham, K. T.; Scott, N. M.; Lauzon-Joset, J.-F.; Leffler, J.; Larcombe, A. N.; Stumbles, P. A.; Robertson, S. A.; Pasquali, C.; Holt, P. G.; Strickland, D. H.

10.1101/232231 — immunology — Posted on 2017-12-11

1050 Pivotal roles of PCNA loading and unloading on heterochromatin function

Janke, R.; King, G.; Kupiec, M.; Rine, J.

10.1101/232181 — genetics — Posted on 2017-12-11

1051 Highly tamoxifen-inducible principal-cell-specific Cre mice with complete fidelity in cell specificity and no leakiness

Chen, L.; Gao, C.; Zhang, L.; Zhang, Y.; Chen, E.; Zhang, W.

10.1101/232108 — genetics — Posted on 2017-12-11

1052 Acto-myosin driven functional nanoclusters of GPI-anchored proteins are generated by integrin receptor signaling

Kalappurakkal, J. M.; Anilkumar, A. A.; Patra, C.; van Zanten, T. S.; Sheetz, M.; Mayor, S.

10.1101/232223 — cell biology — Posted on 2017-12-11

1053 afpCOOL: An Accurate Tool for Antifreeze Protein Detection

Eslami, M.; Shirali-hossein-zade, R.; Takalloo, Z.; Mahdevar, G.; Emamjomeh, A.; Hasan Sajedi, R.; Zahiri, J.

10.1101/231761 — bioinformatics — Posted on 2017-12-11

1054 Understanding Research Development Needs in Capacity Building for NCD Research: The Case of Thailand

Singha-Dong, N.; Bigelow, A.; Furspan, P.; Rajataramya, B.; Villarruel, A.; Potempa, K.

10.1101/231498 — scientific communication and education — Posted on 2017-12-11

1055 The functional organization of descending sensory-motor pathways in Drosophila

Namiki, S.; Dickinson, M. H.; Wong, A. M.; Korff, W.; Card, G. M.

10.1101/231696 — neuroscience — Posted on 2017-12-11

1056 Sensory and decisional components of endogenous attention are dissociable.

Banerjee, S.; Grover, S.; Ganesh, S.; Sridharan, D.

10.1101/231613 — neuroscience — Posted on 2017-12-11

1057 Deep Brain Stimulation for Parkinson’s disease changes perception in the Rubber Hand Illusion

Ding, C.; Palmer, C. J.; Hohwy, J.; Youssef, G. J.; Paton, B.; Tsuchiya, N.; Stout, J. C.; Thyagarajan, D.

10.1101/231340 — neuroscience — Posted on 2017-12-11

1058 Physical mechanisms of ultrasonic neurostimulation of the retina

Menz, M. D.; Ye, P.; Firouzi, K.; Pauly, K. B.; Khuri-Yakub, B. T.; Baccus, S. A.

10.1101/231449 — neuroscience — Posted on 2017-12-11

1059 Cerebral White Matter Sex Dimorphism in Alcoholism: A Diffusion Tensor Imaging Study

Sawyer, K. S.; Maleki, N.; Papadimitriou, G. M.; Makris, N.; Oscar-Berman, M.; Harris, G. J.

10.1101/229609 — neuroscience — Posted on 2017-12-11

1060 System drift and speciation

Schiffman, J. S.; Ralph, P. L.

10.1101/231209 — evolutionary biology — Posted on 2017-12-11

1061 Predicting Response to Platin Chemotherapy Agents with Biochemically-inspired Machine Learning

Mucaki, E. J.; Zhao, J. Z. L.; Lizotte, D.; Rogan, P. K.

10.1101/231712 — pharmacology and toxicology — Posted on 2017-12-11

1062 How fast is neural winner-take-all when deciding between many options?

Kriener, B.; Chaudhuri, R.; Fiete, I.

10.1101/231753 — neuroscience — Posted on 2017-12-11

1063 Metabolic retroconversion of trimethylamine N-oxide and the gut microbiota

Hoyles, L.; Jimenez-Pranteda, M. L.; Chilloux, J.; Brial, F.; Myridakis, A.; Aranias, T.; Magnan, C.; Gibson, G. R.; Sanderson, J. D.; Nicholson, J. K.; Gauguier, D.; McCartney, A. L.; Dumas, M.-E.

10.1101/225581 — microbiology — Posted on 2017-12-11

1064 Microhabitats shape diversity-productivity relationships in freshwater bacterial communities

Schmidt, M. L.; Biddanda, B. A.; Weinke, A. D.; Chiang, E.; Januska, F.; Props, R.; Denef, V. J.

10.1101/231688 — ecology — Posted on 2017-12-11

1065 Species and individual differences in serotonin receptor expression in identified neurons are correlated with a motor behavior

Tamvacakis, A. N.; Senatore, A.; Katz, P. S.

10.1101/231829 — neuroscience — Posted on 2017-12-10

1066 High-resolution repertoire analysis of Tfr and Tfh cells reveals unexpectedly high diversities indicating a bystander activation of follicular T cells

Ritvo, P.-G. G.; Chaara, W.; El Soufi, K.; Bonnet, B.; Six, A.; Mariotti-Ferrandiz, E.; Klatzmann, D.

10.1101/231977 — immunology — Posted on 2017-12-10

1067 mTORC1 activates PASK-Wdr5 signaling to epigenetically connect the nutrient status with myogenesis.

Kikani, C.; Wu, X.; Fogarty, S.; Kang, S. A. W.; Dephoure, N.; Gygi, S.; Sabatini, D.; Rutter, J.

10.1101/232173 — cell biology — Posted on 2017-12-10

1068 Death pheromones triggering hygienic behavior in honey bees (Apis mellifera L.)

McAfee, A.; Chapman, A.; Iovinella, I.; Gallagher-Kurtzke, Y.; Collins, T. F.; Higo, H.; Madilao, L. L.; Pelosi, P.; Foster, L. J.

10.1101/231902 — animal behavior and cognition — Posted on 2017-12-10

1069 A fungal pathogen that robustly manipulates the behavior of Drosophila melanogaster in the laboratory

Elya, C.; Lok, T. C.; Spencer, Q. E.; McCausland, H.; Eisen, M. B.

10.1101/232140 — animal behavior and cognition — Posted on 2017-12-10

1070 Non-native Interactions Explain the Folding Rate Differences in α-Spectrin Domains and the Origin of Internal Friction Effects

da Silva, F. B.; Contessoto, V. G.; Oliveira, V. M.; Clarke, J.; Leite, V. B. P.

10.1101/232116 — biophysics — Posted on 2017-12-10

1071 Effects of latent toxoplasmosis on olfactory functions of men and women

Flegr, J.; Milinski, M.; Kankova, S.; Hula, M.; Hlavacova, J.; Sykorova, K.

10.1101/231795 — animal behavior and cognition — Posted on 2017-12-10

1072 Unraveling mitotic protein networks by 3D multiplexed epitope drug screening

Maier, L.; Kallenberger, S.; Jechow, K.; Waschow, M.; Eils, R.; Conrad, C.

10.1101/231779 — systems biology — Posted on 2017-12-10

1073 The ERK MAPK pathway modulates Gq-dependent locomotion in Caenorhabditis elegans

Coleman, B.; Topalidou, I.; Ailion, M.

10.1101/231746 — genetics — Posted on 2017-12-10

1074 The ancestral animal genetic toolkit revealed by diverse choanoflagellate transcriptomes

Richter, D.; Fozouni, P.; Eisen, M.; King, N.

10.1101/211789 — evolutionary biology — Posted on 2017-12-10

1075 Epithelial stratification shapes infection dynamics

Murall, C. L.; Jackson, R.; Zehbe, I.; Boulle, N.; Segondy, M.; Alizon, S.

10.1101/231985 — systems biology — Posted on 2017-12-10

1076 Mitochondrial heteroplasmy is responsible for Atovaquone drug resistance in Plasmodium falciparum

Siegel, S. V.; Rivero, A. V.; Adapa, S. R.; Wang, C.; Manetsch, R.; Jiang, R. H.; Kyle, D. E.

10.1101/232033 — cell biology — Posted on 2017-12-10

1077 In situ architecture of the algal nuclear pore complex

Mosalaganti, S.; Kosinski, J.; Albert, S.; Schaffer, M.; Plitzko, J. M.; Baumeister, W.; Engel, B. D.; Beck, M.

10.1101/232017 — cell biology — Posted on 2017-12-10

1078 Using Topological Rearrangements to Characterize De-mixed Liquid Phases in Bio-membranes

Iyer, S. S.; Tripathy, M.; Srivastava, A.

10.1101/231274 — biophysics — Posted on 2017-12-10

1079 Biphasic mechanosensitivity of TCR mediated adhesion of T lymphocytes

Wahl, A.; Dinet, C.; Dillard, P.; Puech, P.-H.; Limozin, L.; Sengupta, K.

10.1101/232041 — biophysics — Posted on 2017-12-10

1080 Cytoskeletal mechanisms of axonal contractility

Mutalik, S. P.; Joseph, J.; Pullarkat, P. A.; Ghose, A.

10.1101/227777 — biophysics — Posted on 2017-12-10

1081 Decoupling cellular response to topography and stiffness in three dimensions

Paul, C. D.; Hruska, A.; Staunton, J. R.; Burr, H. A.; Kim, J.; Jiang, N.; Tanner, K.

10.1101/232066 — bioengineering — Posted on 2017-12-10

1082 Mechanisms of KCNQ1 Channel Dysfunction in Long QT Syndrome Involving Voltage Sensor Domain Mutations

Huang, H.; Kuenze, G.; Smith, J.; Taylor, K. C.; Duran, A. M.; Hadziselimovic, A.; Meiler, J.; Vanoye, C.; George, A.; Sanders, C.

10.1101/231845 — biochemistry — Posted on 2017-12-10

1083 Evolutionary responses to conditionality in species interactions across environmental gradients

O'Brien, A. M.; Sawers, R. J. H.; Ross-Ibarra, J.; Strauss, S. Y.

10.1101/031195 — ecology — Posted on 2017-12-10

1084 Selective attention gates the interactive crossmodal coupling between perceptual systems

Convento, S.; Rahman, M. S.; Yau, J. M.

10.1101/207548 — neuroscience — Posted on 2017-12-10

1085 Molecular identification of stone loaches of Choman River system, Tigris Basin, based on the Cytochrome b gene with an overview of the Cobitoidea Superfamily

Ghaderi, E.; Farahmand, H.; Bahrami Kamangar, B.; Nematollahi, M. A.

10.1101/210963 — molecular biology — Posted on 2017-12-10

1086 Cysteine proteases of human hookworm Necator Americanus as virulence factors and implications for drug design with anti-heparin and heparin analogs: A bioinformatics study

Banerjee, A.; Widmer, K.; Caffrey, C. R.; Abagyan, R. A.

10.1101/116921 — bioinformatics — Posted on 2017-12-10

1087 Identification and characterization of siderophore producing arsenic tolerant Staphylococcus sp. TA6 and its possible involvement in arsenic geocycle

Das, S.; Barooah, M.

10.1101/231241 — microbiology — Posted on 2017-12-09

1088 Evolutionary stability of topologically associating domains is associated with conserved gene regulation

Krefting, J.; Andrade-Navarro, M. A.; Ibn-Salem, J.

10.1101/231431 — genomics — Posted on 2017-12-09

1089 Metabolic and Hormonal Alterations Induced by Roux-en-Y Gastric Bypass

Seridi, L.; Leo, G. C.; Lynis, D.; Pories, W. J.; Lenhard, J.

10.1101/230201 — systems biology — Posted on 2017-12-09

1090 Suppression of the dihydrolipoamide dehydrogenase gene (dld-1) protects against the toxicity of human amyloid beta in C. elegans model of Alzheimer’s disease

Ahmad, W.

10.1101/228429 — neuroscience — Posted on 2017-12-09

1091 Gene network analysis identifies a central post-transcriptional regulator of cellular stress survival

Tien, M. Z.; Fiebig, A.; Crosson, S.

10.1101/212902 — microbiology — Posted on 2017-12-09

1092 Decoding the chromatin proteome of a single genomic locus by DNA sequencing

Korthout, T.; Poramba-Liyanage, D.; Verzijlbergen, K.; van Welsem, T.; van Leeuwen, F.

10.1101/229955 — genomics — Posted on 2017-12-09

1093 Marine proteorhodopsins rival photosynthesis in solar energy capture

Gomez-Consarnau, L.; Levine, N. M.; Cutter, L. S.; Wang, D.; Seegers, B.; Aristegui, J.; Fuhrman, J. A.; Gasol, J. M.; Sanudo-Wilhelmy, S. A.

10.1101/231167 — ecology — Posted on 2017-12-09

1094 Hidden antibiotic resistance fitness costs revealed by GWAS-based epistasis analysis

Yokoyama, M.; Laabei, M.; Stevens, E.; Bayliss, S.; Ooi, N.; O'Neill, A.; Murray, E.; Williams, P.; Lubben, A.; Reeksting, S.; Meric, G.; Pascoe, B.; Sheppard, S.; Recker, M.; Hurst, L.; Massey, R.

10.1101/148825 — microbiology — Posted on 2017-12-09

1095 Competing effects of indirect protection and clustering on the power of cluster-randomized controlled vaccine trials

Hitchings, M. D. T.; Lipsitch, M.; Wang, R.; Bellan, S.

10.1101/191163 — epidemiology — Posted on 2017-12-09

1096 Optogenetic dissection of descending behavioral control in Drosophila

Cande, J.; Berman, G. J.; Namiki, S.; Qiu, J.; Korff, W.; Card, G.; Shaevitz, J. W.; Stern, D. L.

10.1101/230128 — neuroscience — Posted on 2017-12-09

1097 Legionella protection and vaccination mediated by Mucosal Associated Invariant T (MAIT) cells

Wang, H.; D'Souza, C.; Lim, X. Y.; Kostenko, L.; Pediongco, T. J.; Eckle, S. B.; Meehan, B. S.; Wang, N.; Li, S.; Mak, J. Y.; Fairlie, D. P.; Iwakura, Y.; Gunnersen, J. M.; Stent, A. W.; Rossjohn, J.; Westall, G. P.; Kjer-Nielsen, L.; Strugnell, R. A.; McCluskey, J.; Corbett, A. J.; Hinks, T. S. C.; Chen, Z.

10.1101/231472 — immunology — Posted on 2017-12-09

1098 A eDNA-qPCR combination assay to non-invasively detect the presence of the parasite Schistocephalus solidus inside its intermediate host, the threespine stickleback

Berger, C.; Aubin-Horth, N.

10.1101/231670 — zoology — Posted on 2017-12-09

1099 Evolutionary stability of topologically associating domains is associated with conserved gene regulation

Krefting, J.; Andrade-Navarro, M. A.; Ibn-Salem, J.

10.1101/231431 — genomics — Posted on 2017-12-09

1100 Variation in physiological function across source populations of a New Zealand freshwater snail

Greimann, E. S.; Fahrner, S.; Woodell, J. D.; Hennessey, S. K.; Kline, M. R.; Moreno, J. A.; Peters, M. R.; Cruise, J. L.; Neiman, M.; Sharbrough, J.

10.1101/230979 — evolutionary biology — Posted on 2017-12-09

1101 Iran’s roads: mitigating the most serious threat to the critically endangered Asiatic cheetah Acinonyx jubatus venaticus

Parchizadeh, J.; Gatta, M.; Bencini, R.; Qashqaei, A. T.; Adibi, M. A.; Williams, S. T.

10.1101/230581 — ecology — Posted on 2017-12-09

1102 Linked-Read sequencing resolves complex structural variants

Garcia, S.; Williams, S.; Xu, A. W.; Herschleb, J.; Marks, P.; Stafford, D.; Church, D. M.

10.1101/231662 — genomics — Posted on 2017-12-08

1103 Shallow whole genome sequencing for robust copy number profiling of formalin-fixed paraffin-embedded breast cancers

Chin, S. F.; Santoja, A.; Grzelak, M.; Ahn, S.; Sammut, S. J.; Clifford, H.; Rueda, O. M.; Pugh, M.; Goldgraben, M. A.; Bardwell, H. A.; Cho, E. Y.; Provenzano, E.; Rojo, F.; Alba, E.; Caldas, C.

10.1101/231480 — genomics — Posted on 2017-12-08

1104 Burly1 is a mouse QTL for lean body mass that maps to a 0.8-Mb region on chromosome 2

Lin, C.; Fesi, B. D.; Marquis, M.; Bosak, N. P.; Lysenko, A.; Koshnevisan, M. A.; Duke, F. F.; Theodorides, M. L.; Nelson, T. M.; McDaniel, A. H.; Avigdor, M.; Arayata, C. J.; Shaw, L.; Bachmanov, A. A.; Reed, D. R.

10.1101/231647 — genetics — Posted on 2017-12-08

1105 Understanding the evolution of anisogamy in the early diverging fungus, Allomyces

Phadke, S.; Rupp, S.; Wilson Sayres, M.

10.1101/230292 — evolutionary biology — Posted on 2017-12-08

1106 Evolution and characterization of carboplatin resistance at single cell resolution

Champa, D.; Sun, S.; Tsai, C.-Y.; Howell, S. B.; Harismendy, O.

10.1101/231548 — cancer biology — Posted on 2017-12-08

1107 High resolution in situ structural determination of heterogeneous specimen

Himes, B.; Zhang, P.

10.1101/231605 — biophysics — Posted on 2017-12-08

1108 Linear models enable powerful differential activity analysis in massively parallel reporter assays

Myint, L.; Avramopoulos, D. G.; Goff, L. A.; Hansen, K. D.

10.1101/196394 — bioinformatics — Posted on 2017-12-08

1109 Cysteine proteases of human hookworm Necator Americanus as virulence factors and implications for drug design with anti-heparin and heparin analogs: A bioinformatics study

Banerjee, A.; Widmer, K.; Caffrey, C. R.; Abagyan, R. A.

10.1101/116921 — bioinformatics — Posted on 2017-12-08

1110 Statistical Approaches to Decreasing the Discrepancy of Non-detects in qPCR Data

Sherina, V.; McMurray, H.; Powers, W.; Land, H.; Love, T.; McCall, M. N.

10.1101/231621 — bioinformatics — Posted on 2017-12-08

1111 High-efficiency optogenetic silencing with soma-targeted anion-conducting channelrhodopsins

Mahn, M.; Gibor, L.; Cohen-Kashi Malina, K.; Patil, P.; Printz, Y.; Oring, S.; Levy, R.; Lampl, I.; Yizhar, O.

10.1101/225847 — neuroscience — Posted on 2017-12-08

1112 Genome size and the extinction of small populations

LaBar, T.; Adami, C.

10.1101/173690 — evolutionary biology — Posted on 2017-12-08

1113 Neotrygon indica sp. nov., the Indian-Ocean blue-spotted maskray (Myliobatoidei, Dasyatidae)

Pavan-Kumar, A.; Kumar, R.; Pitale, P.; Shen, K.-N.; Borsa, P.

10.1101/179911 — zoology — Posted on 2017-12-08

1114 Integrated analysis of anatomical and electrophysiological human intracranial data

Stolk, A.; Griffin, S.; van der Meij, R.; Dewar, C.; Saez, I.; Lin, J. J.; Piantoni, G.; Schoffelen, J.-M.; Knight, R. T.; Oostenveld, R.

10.1101/230912 — neuroscience — Posted on 2017-12-08

1115 Economic wealth and gender inequality shape the distribution of navigational ability in the world population

Coutrot, A.; Silva, R.; Manley, E.; de Cothi, W.; Sami, S.; Bohbot, V.; Wiener, J.; Hölscher, C.; Dalton, R. C.; Hornberger, M.; Spiers, H.

10.1101/188870 — neuroscience — Posted on 2017-12-08

1116 The impact of ribosomal interference, codon usage, and exit tunnel interactions on translation elongation rate variation

Dao Duc, K.; Song, Y. S.

10.1101/090837 — genomics — Posted on 2017-12-08

1117 Antisense transcriptional interference mediates condition-specific gene repression in budding yeast

Nevers, A.; Doyen, A.; Malabat, C.; Neron, B.; Kergrohen, T.; Jacquier, A.; Badis, G.

10.1101/169730 — genomics — Posted on 2017-12-08

1118 A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae)

Schoville, S. D.; Chen, Y. H.; Andersson, M. N.; Benoit, J. B.; Bhandari, A.; Bowsher, J. H.; Brevik, K.; Cappelle, K.; Chen, M.-J. M.; Childers, A. K.; Childers, C.; Christiaens, O.; Clements, J.; Didion, E. M.; Elpidina, E. N.; Engsontia, P.; Friedrich, M.; Garcia-Robles, I.; Gibbs, R. A.; Goswami, C.; Grapputo, A.; Gruden, K.; Grynberg, M.; Henrissat, B.; Jennings, E. C.; Jones, J. W.; Kalsi, M.; Khan, S. A.; Kumar, A.; Li, F.; Lombard, V.; Ma, X.; Martynov, A.; Miller, N. J.; Mitchell, R. F.; Munoz-Torres, M.; Muszewska, A.; Oppert, B.; Palli, S. R.; Panfilio, K. A.; Pauchet, Y.; Perkin, L

10.1101/192641 — genomics — Posted on 2017-12-08

1119 Hidden variation in polyploid wheat drives local adaptation

Gardiner, L.-J.; Joynson, R.; Omony, J.; Rusholme-Pilcher, R.; Olohan, L.; Lang, D.; Bai, C.; Hawkesford, M.; Salt, D.; Spannagl, M.; Mayer, K.; Kenny, J.; Bevan, M.; Hall, N.; Hall, A.

10.1101/217828 — genomics — Posted on 2017-12-08

1120 Cell-type specific eQTL of primary melanocytes facilitates identification of melanoma susceptibility genes

Zhang, T.; Choi, J.; Kovacs, M. A.; Shi, J.; Xu, M.; NISC Comparative Sequencing Program, ; Melanoma Meta-Analysis Consortium, ; Goldstein, A. M.; Iles, M. M.; MacGregor, S.; Amundadottir, L. T.; Law, M. H.; Loftus, S. K.; Pavan, W. J.; Brown, K. M.

10.1101/231423 — genetics — Posted on 2017-12-08

1121 Positively selected effector genes and their contribution to virulence in the smut fungus Sporisorium reilianum

Schweizer, G.; Munch, K.; Mannhaupt, G.; Schirawski, J.; Kahmann, R.; Dutheil, J.

10.1101/177022 — evolutionary biology — Posted on 2017-12-08

1122 Systematic conservation planning for intraspecific genetic diversity.

Paz-Vinas, I.; Loot, G.; Hermoso, V.; Veyssiere, C.; Poulet, N.; Grenouillet, G.; Blanchet, S.

10.1101/105544 — ecology — Posted on 2017-12-08

1123 Cell size-dependent regulation of Wee1 localization by Cdr2 cortical nodes

Allard, C. A. H.; Opalko, H. E.; Liu, K.-W.; Medoh, U.; Moseley, J. B.

10.1101/195628 — cell biology — Posted on 2017-12-08

1124 Bringing Diffuse X-ray Scattering Into Focus

Wall, M.; Wolff, A.; Fraser, J. S.

10.1101/219113 — biophysics — Posted on 2017-12-08

1125 Identification of Gene Regulation Models from Single-Cell Data

Weber, L.; Raymond, W.; Munsky, B.

10.1101/231415 — systems biology — Posted on 2017-12-08

1126 Terrestrial effects of moderately nearby supernovae

Melott, A. L.; Thomas, B. C.

10.1101/230847 — paleontology — Posted on 2017-12-08

1127 Autistic traits, but not schizotypy, predict overweighting of sensory information in Bayesian visual integration

Karvelis, P.; Seitz, A. R.; Lawrie, S. M.; Series, P.

10.1101/230003 — neuroscience — Posted on 2017-12-08

1128 Inhibition of Glyoxalase 1 reduces alcohol self-administration in dependent and nondependent rats

de Guglielmo, G.; Conlisk, D.; Barkley-Levenson, A.; Palmer, A.; George, O.

10.1101/230995 — neuroscience — Posted on 2017-12-08

1129 Effort distribution changes effector choice, behaviour and performance: A visuomotor tracking study using finger forces

Salam, S.; SKM, V.

10.1101/230110 — neuroscience — Posted on 2017-12-08

1130 Generative adversarial networks for reconstructing natural images from brain activity

Seeliger, K.; Güclü, U.; Ambrogioni, L.; Güclütürk, Y.; van Gerven, M. A. J.

10.1101/226688 — neuroscience — Posted on 2017-12-08

1131 To be a Grid Cell: Shuffling procedures for determining “Gridness”

Barry, C.; Burgess, N.

10.1101/230250 — neuroscience — Posted on 2017-12-08

1132 Spatio-Temporal Pattern of Appraising Social and Emotional Relevance: Evidence from Event-Related Brain Potentials

Schacht, A.; Vrticka, P.

10.1101/230961 — neuroscience — Posted on 2017-12-08

1133 White Matter Hyperintensities and Cognitive Decline in de Novo Parkinson’s Disease Patients

Dadar, M.; Zeighami, Y.; Yau, Y.; Fereshtehnejad, S.-M.; Maranzano, J.; Postuma, R. B.; Dagher, A.; Collins, D. L.

10.1101/230896 — neuroscience — Posted on 2017-12-08

1134 Increased microglial synapse elimination in patient-specific models of schizophrenia

Sellgren, C. M.; Gracias, J.; Watmuff, B.; Goold, C. P.; Thanos, J. M.; Fu, T.; Karmacharya, R.; Brown, H. E.; Wang, J.; Sheridan, S. D.; Perlis, R. H.

10.1101/231290 — neuroscience — Posted on 2017-12-08

1135 Emergence of dynamically reconfigurable hippocampal responses by learning to perform probabilistic spatial reasoning

Kanitscheider, I.; Fiete, I.

10.1101/231159 — neuroscience — Posted on 2017-12-08

1136 Spotiton: New Features and Applications

Dandey, V. P.; Wei, H.; Zhang, Z.; Tan, Y. Z.; Acharya, P.; Eng, E. T.; Rice, W. J.; Kahn, P. A.; Potter, C. S.; Carragher, B.

10.1101/230151 — molecular biology — Posted on 2017-12-08

1137 Identification and characterization of siderophore producing arsenic tolerant Staphylococcus sp. TA6 and its possible involvement in arsenic geocycle

Das, S.; Barooah, M.

10.1101/231241 — microbiology — Posted on 2017-12-08

1138 Diversity and evolution of the emerging Pandoraviridae family

Legendre, M.; Fabre, E.; Poirot, O.; Jeudy, S.; Lartigue, A.; Alempic, J.-M.; Beucher, L.; Philippe, N.; Bertaux, L.; Labadie, K.; Coute, Y.; Abergel, C.; Claverie, J.-M.

10.1101/230904 — microbiology — Posted on 2017-12-08

1139 The Combined activities of FtsW and MurJ are required for lipid II translocation during cell division in Escherichia coli

Liu, X.; Meiresonne, N. Y.; Bouhss, A.; den Blaauwen, T.

10.1101/230680 — microbiology — Posted on 2017-12-08

1140 ANTISEPTIC AGENTS ELICIT SHORT-TERM, PERSONALIZED AND BODY SITE-SPECIFIC SHIFTS IN RESIDENT SKIN BACTERIAL COMMUNITIES

SanMiguel, A. J.; Meisel, J. S.; Horwinski, J.; Zheng, Q.; Bradley, C. W.; Grice, E.

10.1101/230193 — microbiology — Posted on 2017-12-08

1141 Programmable transport of micro- and nanoparticles by Paramecium caudatum

Mayne, R.; Morgan, J.; Phillips, N.; Whiting, J.; Adamatzky, A.

10.1101/231092 — microbiology — Posted on 2017-12-08

1142 Prioritizing Parkinson’s Disease genes using population-scale transcriptomic data

Li, Y. I.; Wong, G.; Humphrey, J.; Raj, T.

10.1101/231001 — genomics — Posted on 2017-12-08

1143 Decoding the chromatin proteome of a single genomic locus by DNA sequencing

Korthout, T.; Poramba-Liyanage, D.; Verzijlbergen, K.; van Welsem, T.; van Leeuwen, F.

10.1101/229955 — genomics — Posted on 2017-12-08

1144 Is there association between APOE e4 genotype and structural brain ageing phenotypes, and does that association increase in older age in UK Biobank? (N = 8,395)

Lyall, D. M.; Cox, S. R.; Lyall, L. M.; Celis-Morales, C.; Cullen, B.; Mackay, D. F.; Ward, J.; Strawbridge, R. J.; McIntosh, A. M.; Sattar, N.; Smith, D. J.; Cavanagh, J.; Deary, I. J.; Pell, J. P.

10.1101/230524 — genetics — Posted on 2017-12-08

1145 An endogenous amdoparvovirus in the genome of the Transcaucasian mole vole (Ellobius lutescens): implications for ecology and evolution of carnivore amdoparvoviruses.

Gifford, R. J.; Marsile-Medun, S.

10.1101/224584 — evolutionary biology — Posted on 2017-12-08

1146 Complex multicellularity in fungi: evolutionary convergence, single origin, or both?

Nagy, L.; Krizsan, K.

10.1101/230532 — evolutionary biology — Posted on 2017-12-08

1147 Cross-reactive immunity drives global oscillation and opposed alternation patterns of seasonal influenza A viruses

Gatti, L.; Zhang, J. D.; Anisimova, M.; Schutten, M.; Osterhaus, A.; van der Vries, E.

10.1101/226613 — epidemiology — Posted on 2017-12-08

1148 Excess mortality in Guadeloupe and Martinique, islands of the French West Indies, during the chikungunya epidemic of 2014

Freitas, A. R. R.; Alarcon-Elbal, P. M.; Donalisio, M. R.

10.1101/228445 — epidemiology — Posted on 2017-12-08

1149 Measuring mosquito-borne viral suitability and its implications for Zika virus transmission in Myanmar

Perez, P. N.; Alcantara, L. C.; Obolski, U.; Maia de Lima, M.; Ashley, E.; Smithuis, F.; Horby, P.; Maude, R.; Lourenco, J.

10.1101/231373 — epidemiology — Posted on 2017-12-08

1150 Farm productive realities and the dynamics of bovine viral diarrhea (BVD) transmission

Iotti, B.; Valdano, E.; Savini, L.; Candeloro, L.; Giovannini, A.; Rosati, S.; Colizza, V.; Giacobini, M.

10.1101/230045 — epidemiology — Posted on 2017-12-08

1151 Efficacy of Aedes aegypti control by indoor Ultra Low Volume (ULV) insecticide spraying in Iquitos, Peru

Gunning, C.; Okamoto, K.; Astete, H.; Vasquez, G.; Erhardt, E.; Aguila, C. D.; Pinedo, R.; Cardenas, R.; Pacheco, C.; Chalco, E.; Rodriguez-Ferruci, H.; Scott, T. W.; Lloyd, A. L.; Gould, F.; Morrison, A.

10.1101/231134 — epidemiology — Posted on 2017-12-08

1152 Excess deaths associated with the chikungunya epidemic of 2014 in Jamaica were higher among children under 5 and over 40 years of age, an analysis based on official data.

Freitas, A. R. R.; Donalisio, M. R.

10.1101/227579 — epidemiology — Posted on 2017-12-08

1153 Seasonal temperature variation influences climate suitability for dengue, chikungunya, and Zika transmission

Huber, J. H.; Childs, M. L.; Caldwell, J. M.; Mordecai, E. A.

10.1101/230383 — ecology — Posted on 2017-12-08

1154 Earthquake-induced habitat migration in a riparian spawning fish: implications for conservation management

Orchard, S.; Hickford, M. J. H.; Schiel, D. R.

10.1101/229872 — ecology — Posted on 2017-12-08

1155 Rif1 prolongs the embryonic S phase at the Drosophila mid-blastula transition

Seller, C. A.; O'Farrell, P. H.

10.1101/231357 — developmental biology — Posted on 2017-12-08

1156 Repertoire analysis of antibody CDR-H3 loops suggests affinity maturation does not typically result in rigidification

Jeliazkov, J. R.; Sljoka, A.; Kuroda, D.; Tsuchimura, N.; Katoh, N.; Tsumoto, K.; Gray, J. J.

10.1101/230417 — biophysics — Posted on 2017-12-08

1157 Comparative Annotation Toolkit (CAT) - simultaneous clade and personal genome annotation

Fiddes, I. T.; Armstrong, J.; Diekhans, M.; Nachtweide, S.; Kronenberg, Z. N.; Underwood, J. G.; Gordon, D.; Earl, D.; Keane, T.; Eichler, E. E.; Haussler, D.; Stanke, M.; Paten, B.

10.1101/231118 — bioinformatics — Posted on 2017-12-08

1158 ProGeM: A framework for the prioritisation of candidate causal genes at molecular quantitative trait loci

Stacey, D.; Fauman, E.; Ziemek, D.; Sun, B.; Harshfield, E.; Wood, A.; Butterworth, A.; Suhre, K.; Paul, D.

10.1101/230094 — bioinformatics — Posted on 2017-12-08

1159 Defining a landscape of molecular phenotypes using a simple single sample scoring method

Foroutan, M.; Bhuva, D.; Horan, K.; Lyu, R.; Cursons, J.; Davis, M. J.

10.1101/231217 — bioinformatics — Posted on 2017-12-08

1160 PERSONAL GENOMICS: new concepts for future community data banks

Dodin, G. E.

10.1101/230516 — bioinformatics — Posted on 2017-12-08

1161 Spatiotemporal information is differentially conveyed by hippocampal projections to the anterior olfactory nucleus during episodic-like odour memory.

Aqrabawi, A. J.; Kim, J.

10.1101/230185 — animal behavior and cognition — Posted on 2017-12-08

1162 BEHAVIORAL VARIABILITY AS A MEASURE OF SUBTLE PHENOTYPIC TRAIT EXPRESSION OF MOUSE EXECUTIVE FUNCTION DISTORTION

Prosselkov, P.; Zhang, Q.; Goto, H.; Polygalov, D.; McHugh, T. J.; Itohara, S.

10.1101/229856 — animal behavior and cognition — Posted on 2017-12-08

1163 Feature-specific awake reactivation in human V1 after visual training

Bang, J. W.; Sasaki, Y.; Watanabe, T.; Rahnev, D.

10.1101/231381 — neuroscience — Posted on 2017-12-08

1164 Locating highly correlated sources from MEG with (recursive) (R)DS-MUSIC

Makela, N.; Stenroos, M.; Sarvas, J.; Ilmoniemi, R.

10.1101/230672 — neuroscience — Posted on 2017-12-08

1165 Drosophila Fezf coordinates laminar-specific connectivity through cell-intrinsic and cell-extrinsic mechanisms

Pecot, M.; Santiago, I.; Peng, J.; Ahn, C.; Gur, B.; Xu, C.; Karakhanyan, A.; Silies, M.

10.1101/231399 — neuroscience — Posted on 2017-12-08

1166 Shared understanding is correlated with shared neural responses in the default mode network

Nguyen, M.; Vanderwal, T.; Hasson, U.

10.1101/231019 — neuroscience — Posted on 2017-12-08

1167 HumCFS: A database of fragile sites in human chromosomes

Kumar, R.; Nagpal, G.; Kumar, V.; Usmani, S. S.; Agrawal, P.; Raghava, G. P. S.

10.1101/231233 — bioinformatics — Posted on 2017-12-08

1168 Increased glutaminolytic flux and activation of mitochondrial metabolism by BCL2 hyperactivity in lymphoma

Kaur, K.; Singh, S.; Zecena, H.; Dejean, L.; Filipp, F. V.

10.1101/231068 — systems biology — Posted on 2017-12-08

1169 Resolving the Full Spectrum of Human Genome Variation using Linked-Reads

10.1101/230946 — genomics — Posted on 2017-12-08

1170 Insular Celtic population structure and genomic footprints of migration

Byrne, R. P.; Martiniano, R.; Cassidy, L. M.; Carrigan, M.; Hellenthal, G.; Hardiman, O.; Bradley, D. G.; McLaughlin, R. L.

10.1101/230797 — genetics — Posted on 2017-12-08

1171 Examination of the Shared Genetic Basis of Anorexia Nervosa and Obsessive-Compulsive Disorder

Yilmaz, Z.; Halvorsen, M.; Bryois, J.; Yu, D.; Eating Disorders Working Group of the PGC, ; Tourette Syndrome/OCD Working Group of the PGC, ; Thornton, L. M.; Zerwas, S.; Micali, N.; Moessner, R.; Burton, C. L.; Zai, G.; Erdman, L.; Kas, M. J.; Arnold, P. D.; Davis, L. K.; Knowles, J. A.; Breen, G.; Scharf, J. M.; Nestadt, G.; Mathews, C. A.; Bulik, C. M.; Mattheisen, M.; Crowley, J. J.

10.1101/231076 — genetics — Posted on 2017-12-08

1172 Rapid diversification of Pseudomonas aeruginosa in cystic fibrosis lung-like conditions

Schick, A.; Kassen, R.

10.1101/231050 — evolutionary biology — Posted on 2017-12-08

1173 Extended logistic growth model for heterogeneous populations

Jin, W.; McCue, S.; Simpson, M.

10.1101/231100 — cell biology — Posted on 2017-12-08

1174 A Multifactorial Model of T Cell Expansion and Durable Clinical Benefit in Response to a PD-L1 Inhibitor

Leiserson, M. D.; Syrgkanis, V.; Gilson, A.; Dudik, M.; Funt, S.; Snyder, A.; Mackey, L.

10.1101/231316 — cancer biology — Posted on 2017-12-08

1175 Show me your neighbours, and I’ll tell you what you are – cellular microenvironment matters

Toth, T.; Balassa, T.; Bara, N.; Kovacs, F.; Kriston, A.; Molnar, C.; Haracska, L.; Sukosd, F.; Horvath, P.

10.1101/231282 — bioinformatics — Posted on 2017-12-08

1176 Comparative systems analysis of the secretome of the opportunistic pathogen Aspergillus fumigatus and other Aspergillus species

Vivek-Ananth, R. P.; Mohanraj, K.; Vandanashree, M.; Jhingran, A.; Craig, J. P.; Samal, A.

10.1101/230953 — bioinformatics — Posted on 2017-12-08

1177 Long Read Annotation (LoReAn): automated eukaryotic genome annotation based on long-read cDNA sequencing

Cook, D.; Espejo Valle-Inclan, J.; Pajoro, A.; Rovenich, H.; Thomma, B.; Faino, L.

10.1101/230359 — bioinformatics — Posted on 2017-12-08

1178 A deep mutational scan of an acidic activation domain

Staller, M. V.; Holehouse, A. S.; Swain-Lenz, D.; Das, R. K.; Pappu, R. V.; Cohen, B. A.

10.1101/230987 — systems biology — Posted on 2017-12-08

1179 LRX- and FER-dependent extracellular sensing coordinates vacuolar size for cytosol homeostasis

Dunser, K.; Gupta, S.; Ringli, C.; Kleine-Vehn, J.

10.1101/231043 — plant biology — Posted on 2017-12-08

1180 BRUTUS-LIKE proteins moderate the transcriptional response to iron deficiency in roots

Rodriguez-Celma, J.; Green, R. T.; Connorton, J. M.; Kruse, I.; Cui, Y.; Ling, H. Q.; Balk, J.

10.1101/231365 — plant biology — Posted on 2017-12-08

1181 Increasing Cas9-mediated homology-directed repair efficiency through covalent tethering of DNA repair template

Aird, E. J.; Lovendahl, K. N.; St. Martin, A.; Harris, R. S.; Gordon, W. R.

10.1101/231035 — molecular biology — Posted on 2017-12-08

1182 Deep Sequencing Reveals Transient Segregation of T Cell Repertoires in Splenic T Cell Zones During an Immune Response

Textor, J.; Fähnrich, A.; Meinhardt, M.; Tune, C.; Klein, S.; Pagel, R.; König, P.; Kalies, K.; Westermann, J.

10.1101/229013 — immunology — Posted on 2017-12-08

1183 The fruitENCODE project sheds light on the genetic and epigenetic basis of convergent evolution of climacteric fruit ripening

Lv, P.; Yu, S.; Zhu, N.; Chen, Y.-R.; Zhou, B.; Pan, Y.; Tzeng, D.; Paulo Fabi, J.; Garcia-Mas, J.; Ye, N.; Zhang, J.; Grierson, D.; Fei, Z.; Giovannoni, J.; zhong, s.

10.1101/231258 — genomics — Posted on 2017-12-08

1184 Genome wide association study of behavioral, physiological and gene expression traits in a multigenerational mouse intercross

Gonzales, N. M.; Seo, J.; Hernandez-Cordero, A. I.; St. Pierre, C. L.; Gregory, J. S.; Distler, M. G.; Abney, M.; Canzar, S.; Lionikas, A.; Palmer, A. A.

10.1101/230920 — genetics — Posted on 2017-12-08

1185 Marine proteorhodopsins rival photosynthesis in solar energy capture

Gomez-Consarnau, L.; Levine, N. M.; Cutter, L. S.; Wang, D.; Seegers, B.; Aristegui, J.; Fuhrman, J. A.; Gasol, J. M.; Sanudo-Wilhelmy, S. A.

10.1101/231167 — ecology — Posted on 2017-12-08

1186 Assembly-free and alignment-free sample identification using genome skims

Sarmashghi, S.; Bohmann, K.; Gilbert, M. T. P.; Bafna, V.; Mirarab, S.

10.1101/230409 — ecology — Posted on 2017-12-08

1187 Nicotinamide mononucleotide (NMN) affords cardioprotection by stimulating glycolysis

Nadtochiy, S.; Wang, Y. T.; Nehrke, K.; Munger, J.; Brookes, P. S.

10.1101/230938 — biochemistry — Posted on 2017-12-08

1188 Systems biology analysis of mitogen activated protein kinase inhibitor resistance in malignant melanoma

Zecena, H.; Tveit, D.; Wang, Z.; Farhat, A.; Panchal, P.; Liu, J.; Singh, S.; Sanghera, A.; Bainiwal, A.; Teo, S.; Meyskens, F.; Liu-Smith, F.; Filipp, F. V.

10.1101/231142 — systems biology — Posted on 2017-12-07

1189 Zebrafish differentially process colour across visual space to match natural scenes

Zimmermann, M. J.; Nevala, N. E.; Yoshimatsu, T.; Osorio, D.; Nilsson, D.-E.; Berens, P.; Baden, T.

10.1101/230144 — neuroscience — Posted on 2017-12-07

1190 Population genomics of hypervirulent Klebsiella pneumoniae clonal group 23 reveals early emergence and rapid global dissemination

Lam, M. M.; Wyres, K. L.; Duchene, S.; Wick, R. R.; Judd, L. M.; Gan, Y.-H.; Hoh, C.-H.; Achuleta, S.; Molton, J.; Kalimuddin, S.; Koh, T. H.; Passet, V.; Brisse, S.; Holt, K. E.

10.1101/225359 — genomics — Posted on 2017-12-07

1191 Differential expression analysis of log-ratio transformed counts: benchmarking methods for RNA-Seq data

Quinn, T.; Crowley, T.; Richardson, M.

10.1101/231175 — bioinformatics — Posted on 2017-12-07

1192 Reprogramming human T cell function and specificity with non-viral genome targeting

Roth, T. L.; Puig-Saus, C.; Yu, R.; Shifrut, E.; Carnevale, J.; Hiatt, J.; Saco, J.; Li, H.; Li, J.; Tobin, V.; Nguyen, D.; Ferris, A. M.; Chen, J.; Schickel, J.-N.; Pellerin, L.; Carmody, D.; Alkorta-Aranburu, G.; Del Gaudio, D.; Matsumoto, H.; Morell, M.; Mao, Y.; Quadros, R.; Gurumurthy, C.; Smith, B.; Haugwitz, M.; Hughes, S. H.; Weissman, J.; Schumann, K.; May, A. P.; Ashworth, A.; Kupfer, G.; Greeley, S.; Bacchetta, R.; Meffre, E.; Roncarolo, M. G.; Romberg, N.; Herold, K. C.; Ribas, A.; Leonetti, M. D.; Marson, A.

10.1101/183418 — genetics — Posted on 2017-12-07

1193 A role for the Tgf-β/Bmp co-receptor Endoglin in the molecular oscillator that regulates the hair follicle cycle

Calvo Sanchez, M. I.; Carrasco, E.; Fernandez-Martos, S.; Moreno-Bueno, G.; Bernabeu, C.; Quintanilla, M.; Espada, J.

10.1101/230771 — cell biology — Posted on 2017-12-07

1194 Erlang distribution predicts the number of driver events for childhood and young adulthood cancers

Belikov, A. V.

10.1101/231027 — cancer biology — Posted on 2017-12-07

1195 Feedback Determines the Structure of Correlated Variability in Primary Visual Cortex

Bondy, A. G.; Haefner, R. M.; Cumming, B. G.

10.1101/086256 — neuroscience — Posted on 2017-12-07

1196 A near complete haplotype-phased genome of the dikaryotic wheat stripe rust fungus Puccinia striiformis f. sp. tritici reveals high inter-haplotype diversity

Schwessinger, B.; Sperschneider, J.; Cuddy, W.; Miller, M.; Garnica, D.; Taylor, J.; Dodds, P.; Figueroa, M.; Robert, P.; Rathjen, J.

10.1101/192435 — microbiology — Posted on 2017-12-07

1197 Coevolution of virulence and immunosuppression in multiple infections

Kamiya, T.; Mideo, N.; Alizon, S.

10.1101/149211 — evolutionary biology — Posted on 2017-12-07

1198 Metabolic and Hormonal Alterations Induced by Roux-en-Y Gastric Bypass

Seridi, L.; Leo, G. C.; Lynis, D.; Pories, W. J.; Lenhard, J.

10.1101/230201 — systems biology — Posted on 2017-12-07

1199 TIMELINE OF BRAIN ALTERATIONS IN ALZHEIMER’S DISEASE ACROSS THE ENTIRE LIFESPAN

Coupe, P.; Manjon, J. V.; Lanuza, E.; Catheline, G.

10.1101/229195 — neuroscience — Posted on 2017-12-07

1200 Tuning Spatial Profiles of Selection Pressure to Modulate the Evolution of Resistance

De Jong, M. G.; Wood, K. B.

10.1101/230854 — evolutionary biology — Posted on 2017-12-07

1201 Mutation accumulation in selfing populations under fluctuating selection

Ho, E. K.; Agrawal, A. F.

10.1101/230326 — evolutionary biology — Posted on 2017-12-07

1202 What does not kill a tumour may make it stronger: in silico Insights on Chemotherapeutic Drug Resistance

Hamis, S.; Nithiarasu, P.; Powathil, G.

10.1101/230318 — cancer biology — Posted on 2017-12-07

1203 Alu elements, evolution of the human brain, and the spectrum of neurological disease

Larsen, P. A.; Hunnicutt, K. E.; Larsen, R. J.; Yoder, A. D.; Saunders, A. M.

10.1101/230367 — neuroscience — Posted on 2017-12-07

1204 Diminished Cortical Thickness is Associated with Impulsive Choice in Adolescence

Pehlivanova, M.; Wolf, D.; Sotiras, A.; Kaczkurkin, A.; Moore, T.; Ciric, R.; Cook, P.; Garcia de La Garza, A.; Rosen, A.; Ruparel, K.; Sharma, A.; Shinohara, R.; Roalf, D.; Gur, R.; Davatzikos, C.; Gur, R.; Kable, J.; Satterthwaite, T. D.

10.1101/230888 — neuroscience — Posted on 2017-12-07

1205 Functional connectivity of music-induced analgesia in fibromyalgia

Pando-Naude, V. M.; Barrios, F. A.; Alcauter, S.; Pasaye, E.; Vase, L.; Brattico, E.; Vuust, P.; Garza-Villarreal, E. A.

10.1101/230243 — neuroscience — Posted on 2017-12-07

1206 Tuning Spatial Profiles of Selection Pressure to Modulate the Evolution of Resistance

De Jong, M. G.; Wood, K. B.

10.1101/230854 — evolutionary biology — Posted on 2017-12-07

1207 The Relation Between α-Helical Conformation and Amyloidogenicity

Haimov, B.; Srebnik, S.

10.1101/230862 — biophysics — Posted on 2017-12-07

1208 Neural Representations Behind Social Norm Inferences In Humans

Pegado, F.; Hendriks, M. H. A.; Amelynck, S.; Daniels, N.; Bulthe, J.; Lee Masson, H.; Boets, B.; Op de Beeck, H.

10.1101/230508 — neuroscience — Posted on 2017-12-07

1209 Putting Focus on Transcranial Direct Current Stimulation in Language Production Studies

Klaus, J.; Schutter, D. J. L. G.

10.1101/230623 — neuroscience — Posted on 2017-12-07

1210 Planning and navigation as active inference

Kaplan, R.; Friston, K.

10.1101/230599 — neuroscience — Posted on 2017-12-07

1211 Increasing sensitivity and accuracy of brain-wide quantitative studies in light-sheet microscopy

Müllenbroich, C.; Silvestri, L.; Turrini, L.; Alterini, T.; Di Giovanna, A. P.; Costantini, I.; Gheisari, A.; Vanzi, F.; Sacconi, L.; Pavone, F. S.

10.1101/230540 — neuroscience — Posted on 2017-12-07

1212 Non-Invasive Brain Stimulation to Investigate Language Production in Healthy Speakers: A Review and Meta-Analysis

Klaus, J.; Schutter, D. J. L. G.

10.1101/230631 — neuroscience — Posted on 2017-12-07

1213 Low-frequency alternating current stimulation rhythmically suppresses stimulus-induced gamma-band oscillations in visual cortex and impairs perceptual performance

Herring, J. D.; Esterer, S.; Marshall, T. R.; Jensen, O.; Bergmann, T. O.

10.1101/230656 — neuroscience — Posted on 2017-12-07

1214 The Role of Left Dorsolateral Prefrontal Cortex in Language Processing

Klaus, J.; Schutter, D. J. L. G.

10.1101/230557 — neuroscience — Posted on 2017-12-07

1215 Modeling the Structural Origins of Drug Resistance to Isoniazid via key Mutations in Mycobacterium tuberculosis Catalase-Peroxidase, KatG

Marney, M. W.; Metzger, R. P.; Hecht, D.; Valafar, F.

10.1101/230482 — genomics — Posted on 2017-12-07

1216 A Very Oil Yellow1 modifier of the Oil Yellow1-N1989 allele uncovers a cryptic phenotypic impact of cis-regulatory variation in maize

Khangura, R. S.; Marla, S.; Venkata, B. P.; Heller, N.; Johal, G. S.; Dilkes, B. P.

10.1101/230375 — genetics — Posted on 2017-12-07

1217 The predictability of a lake phytoplankton community, from hours to years

Thomas, M. K.; Fontana, S.; Reyes, M.; Kehoe, M.; Pomati, F.

10.1101/230722 — ecology — Posted on 2017-12-07

1218 Assessment of hydrophobicity scales for protein stability and folding using energy and RMSD criteria

Srebnik, S.; Haimov, B.

10.1101/230839 — biophysics — Posted on 2017-12-07

1219 Formation of correlated chromatin domains at nanoscale dynamic resolution during transcription

Shaban, H. A.; Barth, R.; Bystricky, K.

10.1101/230789 — biophysics — Posted on 2017-12-07

1220 Full-Length Envelope Analyzer (FLEA): A tool for longitudinal analysis of viral amplicons

Eren, K.; Weaver, S.; Ketteringham, R.; Valentyn, M.; Laird Smith, M.; Kumar, V.; Mohan, S.; Kosakovsky Pond, S. L.; Murrell, B.

10.1101/230474 — bioinformatics — Posted on 2017-12-07

1221 Dual tRNA mimicry in the Cricket Paralysis Virus IRES uncovers an unexpected similarity with the Hepatitis C Virus IRES

Fernandez, I. S.; Pisareva, V. P.; Pisarev, A. V.

10.1101/230615 — biochemistry — Posted on 2017-12-07

Campenni, M.; Cronk, L.; Aktipis, A.

10.1101/230607 — animal behavior and cognition — Posted on 2017-12-07

1223 The impact of regular school closure on seasonal influenza epidemics: a data-driven spatial transmission model for Belgium

De Luca, G.; Van Kerckhove, K.; Coletti, P.; Poletto, C.; Bossuyt, N.; Hens, N.; Colizza, V.

10.1101/230565 — epidemiology — Posted on 2017-12-07

1224 Climatic influence on the anthrax niche in warming northern latitudes

Walsh, M. G.; de Smalen, A. W.; Mor, S.

10.1101/219857 — epidemiology — Posted on 2017-12-07

1225 Cell Lysate Microarray for Mapping the Network of Genetic Regulators for Histone Marks

Cheng, L.; Liu, C.-x.; Jiang, S.-y.; Hou, S.; Huang, J.-g.; Chen, Z.-q.; Sun, Y.-y.; Qi, H.; Jiang, H.-w.; Wang, J.-f.; Zhou, Y.-m.; Czajkowsky, D. M.; Dai, J.-b.; Tao, S.-c.

10.1101/230466 — systems biology — Posted on 2017-12-07

1226 Mycobacterium tuberculosis LprE enhances bacterial persistence by inhibiting cathelicidin and autophagy in macrophages

Padhi, A.; Bhagyaraj, E.; Khan, M.; Biswas, M.; Sengupta, S.; Ganguli, G.; Jagadeb, M.; Behera, A.; Pattanaik, K.; Das, I.; Gupta, P.; Nandicoori, V.; Sonawane, A.

10.1101/230698 — physiology — Posted on 2017-12-07

1227 Neuronal tracing and analysis by multispectral tracing in densely labeled mouse brain

Roossien, D. H.; Webb, J. M.; Sadis, B. V.; Yan, Y.; Min, L. Y.; Dizaji, A. S.; Bogart, L. J.; Mazuski, C.; Huth, R. S.; Stecher, J. S.; Lichtman, J. W.; Hensch, T. K.; Herzog, E. D.; Cai, D.

10.1101/230458 — neuroscience — Posted on 2017-12-07

1228 Continuous addition of progenitors forms the cardiac ventricle in zebrafish

Felker, A.; Prummel, K. D.; Merks, A. M.; Mickoleit, M.; Brombacher, E. C.; Huisken, J.; Panakova, D.; Mosimann, C.

10.1101/230649 — developmental biology — Posted on 2017-12-07

1229 Cardiac directed differentiation using small molecule Wnt modulation at single-cell resolution

Friedman, C.; Nguyen, Q.; Lukowski, S.; Helfer, A.; Chiu, H.; Voges, H.; Suo, S.; Han, J.-D.; Osteil, P.; Peng, G.; Jing, N.; Ballie, G.; Senabouth, A.; Christ, A.; Bruxner, T.; Murry, C.; Wong, E.; Ding, J.; Wang, Y.; Hudson, J.; Bar-Joseph, Z.; Tam, P.; Powell, J.; Palpant, N.

10.1101/229294 — developmental biology — Posted on 2017-12-07

1230 Genetic knockdown and knockout approaches in Hydra

Lommel, M.; Tursch, A.; Rustarazo-Calvo, L.; Trageser, B.; Holstein, T. W.

10.1101/230300 — developmental biology — Posted on 2017-12-07

1231 NuMA is a negative regulator of 53BP1 in DNA double-strand break repair

Salvador-Moreno, N.; Liu, J.; Haas, K.; Parker, L.; Chakraborty, C.; Kron, S.; Hodges, K.; Miller, L.; Robinson, P.; Lelievre, S.; Vidi, P.-A.

10.1101/230706 — cell biology — Posted on 2017-12-07

1232 Conformational Ensemble of RNA Oligonucleotides from Reweighted Molecular Simulations

Bottaro, S.; Bussi, G.; Kennedy, S. D.; Turner, D. H.; Lindorff-Larsen, K.

10.1101/230268 — biophysics — Posted on 2017-12-07

1233 Routine Single Particle CryoEM Sample and Grid Characterization by Tomography

10.1101/230276 — biophysics — Posted on 2017-12-07

1234 Copy number variation of ampliconic genes across major human Y haplogroups

Ye, D.; Zaidi, A. A.; Tomaszkiewicz, M.; Liebowitz, C.; Shriver, M. D.; Makova, K. D.

10.1101/230342 — evolutionary biology — Posted on 2017-12-07

1235 Understanding the evolution of anisogamy in the early diverging fungus, Allomyces

Phadke, S.; Rupp, S.; Wilson-Sayres, M.

10.1101/230292 — evolutionary biology — Posted on 2017-12-07

1236 Speciation in sympatry with ongoing secondary gene flow and an olfactory trigger in a radiation of Cameroon cichlids

Poelstra, J. W.; Richards, E. J.; Martin, C.

10.1101/229864 — evolutionary biology — Posted on 2017-12-07

1237 Mutation accumulation in selfing populations under fluctuating selection

Ho, E. K.; Agrawal, A. F.

10.1101/230326 — evolutionary biology — Posted on 2017-12-07

1238 A delay-deterministic model for inferring fitnesseffects from time-resolved genome sequence data

Nene, N. R.; Dunham, A. S.; Illingworth, C. J. R.

10.1101/229963 — evolutionary biology — Posted on 2017-12-07

1239 Collective animal navigation and migratory culture: from theoretical models to empirical evidence

Berdahl, A.; Kao, A.; Flack, A.; Westley, P.; Codling, E.; Couzin, I.; Dell, A.; Biro, D.

10.1101/230219 — ecology — Posted on 2017-12-07

1240 Naked mole-rat transcriptome signatures of socially-suppressed sexual maturation and links of reproduction to aging

Bens, M.; Szafranski, K.; Holtze, S.; Sahm, A.; Groth, M.; Kestler, H. A.; Hildebrandt, T. B.; Platzer, M.

10.1101/221333 — systems biology — Posted on 2017-12-07

1241 Quantitative monitoring of multispecies fish environmental DNA using high-throughput sequencing

Ushio, M.; Murakami, H.; Masuda, R.; Sado, T.; Miya, M.; Sakurai, S.; Yamanaka, H.; Minamoto, T.; Kondoh, M.

10.1101/113472 — ecology — Posted on 2017-12-07

1242 Improving the annotation of the Heterorhabditis bacteriophora genome

McLean, F.; Berger, D.; Laetsch, D.; Schwartz, H.; Blaxter, M.

10.1101/225904 — bioinformatics — Posted on 2017-12-07

1243 Methods for chair restraint and training of the common marmoset on oculomotor tasks

Johnston, K. D.; Barker, K.; Schaeffer, L.; Schaeffer, D.; Everling, S.

10.1101/230235 — neuroscience — Posted on 2017-12-07

1244 Top-down sharpening of hierarchical visual feature representations

Abdelhack, M.; Kamitani, Y.

10.1101/230078 — neuroscience — Posted on 2017-12-07

1245 Controlling motion artefact levels in MR images by suspending data acquisition during periods of head motion

Castella, R.; Arn, L.; Dupuis, E.; Callaghan, M.; Draganski, B.; Lutti, A.

10.1101/230490 — neuroscience — Posted on 2017-12-07

1246 Criterion Setting Modulates Neural Excitability of Human Visual Cortex

Kloosterman, N. A.; de Gee, J. W.; Werkle-Bergner, M.; Garrett, D. D.; Fahrenfort, J. J.

10.1101/229989 — neuroscience — Posted on 2017-12-07

1247 Evidence against the detectability of a hippocampal place code using functional magnetic resonance imaging

Nolan, C. R.; Vromen, J. M. G.; Cheung, A.; Baumann, O.

10.1101/229781 — neuroscience — Posted on 2017-12-06

1248 Shared and distinct transcriptomic cell types across neocortical areas

Tasic, B.; Yao, Z.; Smith, K. A.; Graybuck, L.; Nguyen, T. N.; Bertagnolli, D.; Goldy, J.; Garren, E.; Economo, M. N.; Viswanathan, S.; Penn, O.; Bakken, T.; Menon, V.; Miller, J. A.; Fong, O.; Hirokawa, K. E.; Lathia, K.; Rimorin, C.; Tieu, M.; Larsen, R.; Casper, T.; Barkan, E.; Kroll, M.; Parry, S.; Shapovalova, N. V.; Hirchstein, D.; Pendergraft, J.; Kim, T. K.; Szafer, A.; Dee, N.; Groblewski, P.; Wickersham, I.; Cetin, A.; Harris, J. A.; Levi, B. P.; Sunkin, S. M.; Madisen, L.; Daigle, T. L.; Looger, L.; Bernard, A.; Phillips, J.; Lein, E.; Hawrylycz, M.; Svoboda, K.; Jones, A. R.; Koch,

10.1101/229542 — neuroscience — Posted on 2017-12-06

1249 Comparison of Small Gut and Whole Gut Microbiota of First-Degree Relatives with Adult Patients with Celiac Disease and Controls

Shetty, S. A.; Bodkhe, R.; Dhotre, D. P.; Verma, A. K.; Bhatia, K.; Mishra, A.; Kaur, G.; Pande, P.; Bangarusamy, D. K.; Santosh, B. P.; Perumal, R. C.; Ahuja, V.; Shouche, Y. S.; Makharia, G. K.

10.1101/227272 — microbiology — Posted on 2017-12-06

1250 A new CRISPR screening approach for identifying novel autophagy-related factors and cytoplasm-to-lysosome trafficking routes

Shoemaker, C. J.; Huang, T. Q.; Weir, N. R.; Polyakov, N.; Denic, V.

10.1101/229732 — cell biology — Posted on 2017-12-06

1251 Housekeeping genes, revisited at the single-cell level

Lin, Y.; Ghazanfar, S.; Strbenac, D.; Wang, A.; Patrick, E.; Speed, T.; Yang, J.; Yang, P.

10.1101/229815 — bioinformatics — Posted on 2017-12-06

1252 TahcoRoll: An Efficient Approach for Signature Profiling in Genomic Data through Variable-Length k-mers

Ju, C. J.-T.; Jiang, J.-Y.; Li, R.; Li, Z.; Wang, W.

10.1101/229708 — bioinformatics — Posted on 2017-12-06

1253 Succinct De Bruijn Graph Construction for Massive Populations Through Space-Efficient Merging

Muggli, M. D.; Boucher, C.

10.1101/229641 — bioinformatics — Posted on 2017-12-06

1254 BrainImageR: Spatiotemporal gene set analysis referencing the human brain

Linker, S.; Hsu, J. Y.; Pfaff, A.; Amatya, D.; Ko, S.-M.; Voter, S.; Wong, Q.; Gage, F. H.

10.1101/229302 — bioinformatics — Posted on 2017-12-06

1255 Testing hypotheses about the microbiome using an ordination-based linear decomposition model

Hu, Y.; Satten, G. A.

10.1101/229831 — bioinformatics — Posted on 2017-12-06

1256 Latent TB infection in foreign-born communities: import vs. transmission in the Netherlands derived through mathematical modelling

Korthals Altes, H.; Kloet, S.; Cobelens, F.; Bootsma, M.

10.1101/228924 — epidemiology — Posted on 2017-12-06

1257 Natural Variation of OsLG3 Controls Drought Stress Tolerance in Rice by Inducing ROS Scavenging

Xiong, H.; Yu, J.; Li, J.; Wang, X.; Liu, P.; Zhang, H.; Zhao, Y.; Yin, Z.; Li, Y.; Guo, Y.; Fu, B.; Wang, W.; Li, Z.; Ali, J.; Li, Z.

10.1101/228403 — plant biology — Posted on 2017-12-06

1258 Time-resolved analyses of elemental distribution and concentration in living plants: An example using manganese toxicity in cowpea leaves

Blamey, P.; Paterson, D.; Walsh, A.; Afshar, N.; McKenna, B.; Cheng, M.; Tang, C.; Horst, W.; Menzies, N.; Kopittke, P.

10.1101/228577 — plant biology — Posted on 2017-12-06

1259 Sniff-invariant intensity perception using olfactory bulb coding of inhalation dynamics

Jordan, R.; Kollo, M.; Schaefer, A. T.

10.1101/226969 — neuroscience — Posted on 2017-12-06

1260 A zinc-finger fusion protein refines Gal4-defined neural circuits

Varija Raghu, S.; Mohammad, F.; Chua, J. Y.; Barros, C.; Lam, J.; Loberas, M.; Sahani, S.; Claridge-Chang, A.

10.1101/228718 — neuroscience — Posted on 2017-12-06

1261 Folic acid instability and bacterial metabolism combine to impact C. elegans development and ageing

Maynard, C.; Cummins, I.; Green, J.; Weinkove, D.

10.1101/230227 — microbiology — Posted on 2017-12-06

1262 Timing of host feeding drives rhythms in parasite replication

Prior, K. F.; van der Veen, D. R.; O'Donnell, A. J.; Cumnock, K.; Schneider, D.; Pain, A.; Subudhi, A.; Ramaprasad, A.; Rund, S. S.; Savill, N. J.; Reece, S. E.

10.1101/229674 — microbiology — Posted on 2017-12-06

1263 A simple mung bean infection model for studying the virulence of Pseudomonas aeruginosa

Garge, S.; Azimi, S.; Diggle, S. P.

10.1101/229757 — microbiology — Posted on 2017-12-06

1264 Automated detection of Mycobacterial growth on 96-well plates for rapid and accurate Tuberculosis drug susceptibility testing

Fowler, P. W.; Gibertoni Cruz, A. L.; Hoosdally, S. J.; Jarrett, L.; Borroni, E.; Chiacchiaretta, M.; Rathod, P.; Walker, T. M.; Robinson, E.; Peto, T. E.; Cirillo, D. M. M.; Smith, E. G.; Crook, D. W.

10.1101/229427 — microbiology — Posted on 2017-12-06

1265 Evolutionary plasticity in the innate immune function of Akirin

Polanowska, J.; Chen, J.-X.; Soule, J.; Omi, S.; Belougne, J.; Taffoni, C.; Pujol, N.; Selbach, M.; Zugasti, O.; Ewbank, J. J.

10.1101/230102 — immunology — Posted on 2017-12-06

1266 Characterization of Gene Expression Changes Over Healthy Term Pregnancies

Knight, A. K.; Dunlop, A. L.; Kilaru, V.; Cobb, D.; Corwin, E. J.; Conneely, K. N.; Smith, A. K.

10.1101/229773 — genomics — Posted on 2017-12-06

1267 Gene birth and constraint avoidance both contribute to structural disorder in overlapping genes

Willis, S.; Masel, J.

10.1101/229690 — evolutionary biology — Posted on 2017-12-06

1268 Transcriptomic analysis of longitudinal Burkholderia pseudomallei infecting the cystic fibrosis lung

Price, E. P.; Viberg, L. T.; Kidd, T. J.; Bell, S. C.; Currie, B. J.; Sarovich, D. S.

10.1101/229823 — evolutionary biology — Posted on 2017-12-06

1269 fluxweb: a package to easily estimate energy fluxes in food webs

Gauzens, B.; Barnes, A.; Jochum, M.; Hines, J.; Wang, S.; Giling, D.; Rosenbaum, B.; Brose, U.

10.1101/229450 — ecology — Posted on 2017-12-06

1270 Overlooked biodiversity loss in Amazonian smallholder agriculture

Socolar, J. B.; Valderrama Sandoval, E. H.; Wilcove, D. S.

10.1101/192955 — ecology — Posted on 2017-12-06

1271 Fibroblast Growth Factor 2 lethally sensitizes cancer cells to stress-targeted therapeutic inhibitors

Dias, M. H.; Fonseca, C. S.; Zeidler, J. D.; Albuquerque, L. L.; da Silva, M. S.; Cararo-Lopes, E.; Reis, M. S.; Noel, V.; Prior, I. A.; Armelin, H. A.

10.1101/227496 — cancer biology — Posted on 2017-12-06

1272 Transfer RNA genes experience exceptionally elevated mutation rates

Thornlow, B.; Hough, J.; Roger, J.; Gong, H.; Lowe, T.; Corbett-Detig, R.

10.1101/229906 — bioinformatics — Posted on 2017-12-06

1273 Learning from mistakes: Accurate prediction of cell type-specific transcription factor binding

Keilwagen, J.; Posch, S.; Grau, J.

10.1101/230011 — bioinformatics — Posted on 2017-12-06

1274 Aqueous ethanol permeation across Sterlitech flat sheet aquaporin membranes

Lewis, J.; Alshami, A.

10.1101/200709 — bioengineering — Posted on 2017-12-06

1275 Bacterial adaptation to host diet is a key evolutionary force shaping host-microbe symbiosis

Martino, M. E.; Joncour, P.; Leenay, R.; Gervais, H.; Shah, M.; Hughes, S.; Gillet, B.; Beisel, C.; Leulier, F.

10.1101/222364 — evolutionary biology — Posted on 2017-12-06

1276 pysster: Learning Sequence and Structure Motifs in DNA and RNA Sequences using Convolutional Neural Networks

Budach, S.; Marsico, A.

10.1101/230086 — bioinformatics — Posted on 2017-12-06

1277 The Dynamics of Error Processing in the Human Brain as Reflected by High-Gamma Activity in Noninvasive and Intracranial EEG

Völker, M.; Fiederer, L. D. J.; Berberich, S.; Hammer, J.; Behncke, J.; Krsek, P.; Tomasek, M.; Marusic, P.; Reinacher, P. C.; Coenen, V. A.; Helias, M.; Schulze-Bonhage, A.; Burgard, W.; Ball, T.

10.1101/166280 — neuroscience — Posted on 2017-12-06

1278 Catecholamines Alter the Intrinsic Variability of Cortical Population Activity and Perception

Pfeffer, T.; Avramiea, A.-E.; Nolte, G.; Engel, A. K.; Linkenkaer-Hansen, K.; Donner, T. H.

10.1101/170613 — neuroscience — Posted on 2017-12-06

Senden, M.; Reuter, N.; van den Heuvel, M.; Goebel, R.; Deco, G.; Gilson, M.

10.1101/185603 — neuroscience — Posted on 2017-12-06

1280 Standing Sentinel during Human Sleep: Continued Evaluation of Environmental Stimuli in the Absence of Consciousness

Blume, C.; del Giudice, R.; Wislowska, M.; Heib, D. P. J.; Schabus, M.

10.1101/187195 — neuroscience — Posted on 2017-12-06

1281 Spatial Topography of Individual-Specific Cortical Networks Predicts Human Cognition, Personality and Emotion

Kong, R.; Li, J.; Sun, N.; Sabuncu, M. R.; Schaefer, A.; Zuo, X.-N.; Holmes, A.; Eickhoff, S. B.; Yeo, B. T. T.

10.1101/213041 — neuroscience — Posted on 2017-12-06

1282 Patterns of selection reveal shared molecular targets over short and long evolutionary timescales

Li, J.; Vazquez-Garcia, I.; Persson, K.; Yue, J.-X.; Barre, B.; Gonzalez, A.; Hall, M. N.; Long, A.; Warringer, J.; Mustonen, V.; Liti, G.

10.1101/229419 — genetics — Posted on 2017-12-06

1283 ATP-induced asymmetric pre-protein folding: a driver of protein translocation?

Corey, R. A.; Allen, W. J.; Collinson, I.

10.1101/202150 — biophysics — Posted on 2017-12-06

1284 Specific cardiolipin-SecY interactions are required for proton-motive-force stimulation of protein secretion

Corey, R. A.; Pyle, E.; Allen, W. J.; Casiraghi, M.; Miroux, B.; Arechaga, I.; Politis, A.; Collinson, I.

10.1101/202184 — biophysics — Posted on 2017-12-06

1285 Social learning strategies for matters of taste

Analytis, P. P.; Barkoczi, D.; Herzog, S. M.

10.1101/170191 — animal behavior and cognition — Posted on 2017-12-06

1286 MOLECULAR CORRELATE OF MOUSE EXECUTIVE FUNCTION. TOP-DOWN AND BOTTOM-UP COMPLEMENTATIONS BY PRESYNAPTIC VERTEBRATE BRAIN-SPECIFIC Ntng GENE PARALOGS

Prosselkov, P.; Zhang, Q.; Goto, H.; Polygalov, D.; McHugh, T. J.; Itohara, S.

10.1101/139444 — neuroscience — Posted on 2017-12-06

1287 Taking off the training wheels: Measuring auditory P3 during outdoor cycling using an active wet EEG system

Scanlon, J. E. M.; Townsend, K. A.; Cormier, D. L.; Kuziek, J. W. P.; Mathewson, K.

10.1101/157941 — neuroscience — Posted on 2017-12-06

1288 Plasticity Of Plant Defense And Its Evolutionary Implications In Wild Populations Of Boechera stricta

Wagner, M.; Mitchell-Olds, T.

10.1101/144626 — evolutionary biology — Posted on 2017-12-06

1289 To increase trust, change the social design behind aggregated biodiversity data

Franz, N.; Sterner, B.

10.1101/157214 — evolutionary biology — Posted on 2017-12-06

1290 Miniring approach for high-throughput drug screenings in 3D tumor models

Phan, N.; Tofig, B.; Huang, J.; Memarzadeh, S.; Damoiseaux, R.; Soragni, A.

10.1101/138412 — cancer biology — Posted on 2017-12-06

1291 FGIN-1-27, an agonist at translocator protein 18 kDa (TSPO), produces anti-anxiety and anti-panic effects in non-mammalian models

Lima, M. G.; Cueto-Escobedo, J.; Rodriguez-Landa, J. F.; Maximino, C.

10.1101/056507 — pharmacology and toxicology — Posted on 2017-12-06

1292 Predicting future learning from baseline network architecture

Mattar, M. G.; Wymbs, N. F.; Bock, A. S.; Aguirre, G. K.; Grafton, S. T.; Bassett, D. S.

10.1101/056861 — neuroscience — Posted on 2017-12-06

1293 An orthogonal and pH-tunable sensor-selector for muconic acid biosynthesis in yeast

Snoek, T.; Romero-Suarez, D.; Zhang, J.; Skjoedt, M. L.; Sudarsan, S.; Jensen, M. K.; Keasling, J. D.

10.1101/229922 — synthetic biology — Posted on 2017-12-06

1294 Effect sizes of somatic mutations in cancer

Cannataro, V. L.; Gaffney, S. G.; Townsend, J. P.

10.1101/229724 — cancer biology — Posted on 2017-12-06

1295 DARPP-32 and t-DARPP promote lung cancer growth through IKKα-dependent cell migration and Akt/Erk-mediated cell survival

Alam, S. K.; Astone, M.; Liu, P.; Hall, S. R.; Coyle, A. M.; Dankert, E. N.; Hoffman, D. K.; Zhang, W.; Kuang, R.; Roden, A. C.; Mansfield, A. S.; Hoeppner, L. H.

10.1101/229658 — cancer biology — Posted on 2017-12-06

1296 The Activation of MEK1 by Enhanced Homodimerization Drives Tumorigenesis

Yuan, J.; Ng, W. H.; Tian, Z.; Yap, J.; Baccarini, M.; Chen, Z.; Hu, J.

10.1101/229849 — cancer biology — Posted on 2017-12-06

1297 Network analysis of mass spectrometry imaging data from colorectal cancer identifies key metabolites common to metastatic development.

Inglese, P.; Strittmatter, N.; Doria, L.; Mroz, A.; Spencer, A.; Poynter, L.; Danhorn, A.; Kudo, H.; Mirnezami, R.; Goldin, R. D.; Nicholson, J. K.; Takats, Z.; Glen, R. C.

10.1101/230052 — cancer biology — Posted on 2017-12-06

1298 Quantitative mass imaging of single molecules in solution

Young, G.; Hundt, N.; Cole, D.; Fineberg, A.; Andrecka, J.; Tyler, A.; Olerinyova, A.; Ansari, A.; Marklund, E. G.; Collier, M. P.; Chandler, S. A.; Tkachenko, O.; Allen, J.; Crispin, M.; Billington, N.; Takagi, Y.; Sellers, J. R.; Eichmann, C.; Selenko, P.; Frey, L.; Riek, R.; Galpin, M. R.; Struwe, W. B.; Benesch, J. L. P.; Kukura, P.

10.1101/229740 — biophysics — Posted on 2017-12-06

1299 A physics-explicit model of bacterial conjugation shows the stabilizing role of the conjugative junction

Pastuszak, J.; Waclaw, B.

10.1101/229682 — biophysics — Posted on 2017-12-06

1300 Alleviation of Al toxicity by Si is associated with the formation of Al-Si complexes in root tissues of sorghum

Kopittke, P.; Gianoncelli, A.; Kourousias, G.; Green, K.; McKenna, B.

10.1101/229625 — plant biology — Posted on 2017-12-06

1301 Extremely flexible infection programs in a fungal plant pathogen

Haueisen, J.; Moeller, M.; Eschenbrenner, C. J.; Grandaubert, J.; Seybold, H.; Adamiak, H.; Stukenbrock, E. H.

10.1101/229997 — plant biology — Posted on 2017-12-06

1302 The rust fungus Melampsora larici-populina expresses a conserved genetic program and distinct sets of secreted protein genes during infection of its two host plants, larch and poplar

Lorrain, C.; Marchal, C.; Hacquard, S.; Delaruelle, C.; Petrowski, J.; Petre, B.; Hecker, A.; Frey, P.; Duplessis, S.

10.1101/229971 — microbiology — Posted on 2017-12-06

1303 Light assisted antibiotics

Argyraki, A.; Markvart, M.; Stavnsbjerg, C.; Kragh, K. N.; Bjorndal, L.; Bjarnsholt, T.; Petersen, P. M.

10.1101/229914 — microbiology — Posted on 2017-12-06

1304 A simple mung bean infection model for studying the virulence of Pseudomonas aeruginosa

Garge, S.; Azimi, S.; Diggle, S. P.

10.1101/229757 — microbiology — Posted on 2017-12-06

1305 Quantitative morphological variation in the developing Drosophila wing

Matamoro-Vidal, A.; Huang, Y.; Salazar-Ciudad, I.; Shimmi, O.; Houle, D.

10.1101/229880 — genetics — Posted on 2017-12-06

1306 Diagnostic utility of telomere length measurement in a hospital setting

Alder, J. K.; Hanumanthu, V. S.; Strong, M. A.; DeZern, A. E.; Stanley, S. E.; Takemoto, C. M.; Danilova, L.; Applegate, C. D.; Bolton, S. G.; Mohr, D. W.; Brodsky, R. A.; Casella, J. F.; Greider, C. W.; Jackson, J. B.; Armanios, M.

10.1101/225797 — genetics — Posted on 2017-12-06

1307 Shifts in diversification rates and host jump frequencies shaped the diversity of host range among Sclerotiniaceae fungal plant pathogens

Navaud, O.; Barbacci, A.; Taylor, A.; Clarkson, J. P.; Raffaele, S.

10.1101/229930 — evolutionary biology — Posted on 2017-12-06

1308 Estrogen receptor inhibition enhances cold-induced adipocyte beiging and glucose sensitivity

Lapid, K.; Lim, A.; Berglund, E. D.; Graff, J. M.

10.1101/229591 — developmental biology — Posted on 2017-12-06

1309 Shared Genetic Requirements for Atf5 Translation in the Vomeronasal Organ and Main Olfactory Epithelium

Dalton, R. P.

10.1101/224980 — developmental biology — Posted on 2017-12-06

1310 Distinct SoxB1 networks are required for naïve and primed pluripotency

Corsinotti, A.; Wong, F. C.; Tatar, T.; Szczerbinska, I.; Halbritter, F.; Colby, D.; Gogolok, S.; Pantier, R.; Liggat, K.; Mirfazeli, E. S.; Hall-Ponsele, E.; Mullin, N.; Wilson, V.; Chambers, I.

10.1101/229716 — cell biology — Posted on 2017-12-06

1311 Transcription factor SmWRKY1 positively promote the biosynthesis of tanshinones in Salvia miltiorrhiza

Cao, W.; Wang, Y.; Shi, M.; Hao, X.; Zhao, W.; Wang, Y.; Ren, J.; Kai, G.

10.1101/230029 — bioengineering — Posted on 2017-12-06

1312 Tuberculosis outbreak investigation using phylodynamic analysis

Kuehnert, D.; Coscolla, M.; Stucki, D.; Metcalfe, J.; Fenner, L.; Gagneux, S.; Stadler, T.

10.1101/229500 — epidemiology — Posted on 2017-12-05

1313 Quantifying antimicrobial access and practices for paediatric diarrheal disease in an urban community setting in Southeast Asia

Nhi, L. T. Q.; de Alwis, R.; Lam, P. K.; Hoa, N. N.; Nhan, N. M.; Oanh, L. T. T.; Nam, D. T.; Han, B. N. N.; Huyen, H. T.; Duong, V. T.; Vi, L. L.; Tien, B. T. T.; Tuyet, H. T. D.; Nha, L. H.; Thwaites, G.; Dung, D. V.; Baker, S.

10.1101/228635 — epidemiology — Posted on 2017-12-05

1314 Evidence against tetrapod-wide digit identities and for a limited frame shift in bird wings

Stewart, T. A.; Liang, C.; Cotney, J.; Noonan, J. P.; Sanger, T.; Wagner, G.

10.1101/224147 — evolutionary biology — Posted on 2017-12-05

1315 Development of an in vitro pre-mRNA splicing assay using plant nuclear extract

Albaqami, M.; Reddy, A.

10.1101/222976 — plant biology — Posted on 2017-12-05

1316 Gating by induced α-γ asynchrony in selective attention

Pascucci, D.; Hervais-Adelman, A.; Michel, C.; Plomp, G.

10.1101/229526 — neuroscience — Posted on 2017-12-05

1317 Brain networks, dimensionality, and global signal averaging in resting-state fMRI: Hierarchical network structure results in low-dimensional spatiotemporal dynamics

Gotts, S. J.; Gilmore, A. W.; Martin, A.

10.1101/229567 — neuroscience — Posted on 2017-12-05

1318 Allosteric effector ppGpp potentiates the inhibition of transcript initiation by DksA

Molodtsov, V.; Sineva, E.; Zhang, L.; Huang, X.; Cashel, M.; Ades, S. E.; Murakami, K.

10.1101/188680 — molecular biology — Posted on 2017-12-05

1319 Molecular Identification and Characterization of Two Rubber Dandelion Amalgaviruses

Debat, H. J.; Luo, Z.; Iaffaldano, B. J.; Zhuang, X.; Cornish, K.

10.1101/229443 — microbiology — Posted on 2017-12-05

1320 PET studies of the glial cell marker TSPO in psychosis patients - a meta-analysis using individual participant data

Plaven-Sigray, P.; Matheson, G. J.; Collste, K.; Ashok, A. H.; Coughlin, J. M.; Howes, O. D.; Mizrahi, R.; Pomper, M. G.; Rusjan, P.; Veronese, M.; Wang, Y.; Cervenka, S.

10.1101/228742 — immunology — Posted on 2017-12-05

1321 Distinct chromatin signatures of DNA hypomethylation in aging and cancer

F. Perez, R.; Tejedor, J. R.; F. Bayon, G.; F. Fernandez, A.; F. Fraga, M.

10.1101/229476 — genomics — Posted on 2017-12-05

1322 Multi-SKAT: General framework to test multiple phenotype associations of rare variants

Dutta, D.; Scott, L.; Boehnke, M.; Lee, S.

10.1101/229583 — genetics — Posted on 2017-12-05

1323 fluxweb: a package to easily estimate energy fluxes in food webs

Gauzens, B.; Barnes, A.; Jochum, M.; Hines, J.; Wang, S.; Giling, D.; Rosebaum, B.; Brose, U.

10.1101/229450 — ecology — Posted on 2017-12-05

1324 Systematic transcriptomics reveals a biphasic mode of sarcomere morphogenesis in flight muscles regulated by Spalt

Spletter, M. L.; Barz, C.; Yeroslaviz, A.; Zhang, X.; Lemke, S. B.; Brunner, E.; Cardone, G.; Basler, K.; Habermann, B. H.; Schnorrer, F.

10.1101/229534 — developmental biology — Posted on 2017-12-05

1325 SciRide Finder : citation-based paradigm in biomedical literature search.

Volanakis, A.; Konrad, K.

10.1101/208959 — bioinformatics — Posted on 2017-12-05

1326 Barley Long Non-Coding RNAs and Their Tissue-Specific Co-expression Pattern with Coding-Transcripts

Karakulah, G.; Unver, T.

10.1101/229559 — bioinformatics — Posted on 2017-12-05

1327 Scanning along a compressed timeline of the future

Singh, I.; Howard, M. W.

10.1101/229617 — animal behavior and cognition — Posted on 2017-12-05

1328 Distinct descending motor cortex pathways and their roles in movement

Economo, M.; Viswanathan, S.; Tasic, B.; Bas, E.; Winnubst, J.; Menon, V.; Graybuck, L. T.; Nguyen, T. N.; Wang, L.; Gerfen, C. R.; Chandrashekar, J.; Zeng, H.; Looger, L. L.; Svoboda, K.

10.1101/229260 — neuroscience — Posted on 2017-12-05

1329 Accurate estimation of neural population dynamics without spike sorting

Trautmann, E.; Stavisky, S.; Lahiri, S.; Ames, K.; Kaufman, M.; Ryu, S.; Ganguli, S.; Shenoy, K.

10.1101/229252 — neuroscience — Posted on 2017-12-05

1330 Automated detection of Mycobacterial growth on 96-well plates for rapid and accurate Tuberculosis drug susceptibility testing

Fowler, P. W.; Gilbertoni Cruz, A. L.; Hoosdally, S. J.; Jarrett, L.; Borroni, E.; Chiacchiaretta, M.; Rathod, P.; Walker, T. M.; Robinson, E.; Peto, T. E.; Cirillo, D. M.; Smith, E. G.; Crook, D. W.

10.1101/229427 — microbiology — Posted on 2017-12-05

1331 Hospitalized premature infants are colonized by related bacterial strains with distinct proteomic profiles

Brown, C. T.; Xiong, W.; Olm, M. R.; Thomas, B. C.; Baker, R.; Firek, B.; Morowitz, M. J.; Hettich, R. L.; Banfield, J. F.

10.1101/217950 — microbiology — Posted on 2017-12-05

1332 Neurohormonal signalling controls insulin sensitivity and specificity in C. elegans

Burton, N.; Dwivedi, V.; Burkhart, K.; Kaplan, R.; Baugh, R.; Horvitz, H. R.

10.1101/229393 — genetics — Posted on 2017-12-05

1333 Two consecutive microtubule-based epithelial seaming events mediate dorsal closure in the scuttle fly Megaselia abdita

Fraire-Zamora, J. J.; Jaeger, J.; Solon, J.

10.1101/229492 — developmental biology — Posted on 2017-12-05

1334 Aging in a relativistic biological space-time

Maestrini, D.; Abler, D.; Adhikarla, V.; Armenian, S.; Branciamore, S.; Carlesso, N.; Marcucci, G.; Kuo, Y.-H.; Sahoo, P.; Rockne, R.

10.1101/229161 — cancer biology — Posted on 2017-12-05

1335 Phasor based single-molecule localization microscopy in 3D (pSMLM-3D): an algorithm for MHz localization rates using standard CPUs

Martens, K.; Bader, A. N.; Baas, S.; Rieger, B.; Hohlbein, J.

10.1101/191957 — biophysics — Posted on 2017-12-05

1336 Modeling and simulating networks of interdependent protein interactions

Stoecker, B. K.; Koester, J.; Zamir, E.; Rahmann, S.

10.1101/229435 — systems biology — Posted on 2017-12-05

1337 Spontaneous Pre-encoding Activation of Neural Patterns Predicts Memory ‎

Sadeh, T.; Chen, J.; Goshen-Gottstein, Y.; Moscovitch, M.

10.1101/229401 — neuroscience — Posted on 2017-12-05

1338 Predicting DNA accessibility in the pan-cancer tumor genome using RNA-seq, WGS, and deep learning

Wnuk, K.; Sudol, J.; Rabizadeh, S.; Szeto, C.; Vaske, C.

10.1101/229385 — bioinformatics — Posted on 2017-12-05

1339 Grafting or Pruning in the Animal Tree: Lateral Gene Transfer and Gene Loss?

Dunning Hotopp, J. C.

10.1101/229468 — genomics — Posted on 2017-12-05

1340 Engineering a promiscuous pyrrolysyl-tRNA synthetase by a high throughput FACS screen

Hohl, A.; Karan, R.; Akal, A.; Renn, D.; Liu, X.; Dharamarajnadar, A.; Ghoprade, S. A.; Groll, M.; Rueping, M.; Eppinger, J.

10.1101/229054 — biochemistry — Posted on 2017-12-05

1341 Spawning Biology and Induced Breeding of freshwater catfish Mystus dibrugarensis: An approach to conservation

BAILUNG, B.; BISWAS, S. P.

10.1101/229377 — zoology — Posted on 2017-12-05

1342 Salt-inducible kinase 3 regulates the mammalian circadian clock by destabilizing PER2 protein

Hayasaka, N.; Hirano, A.; Miyoshi, Y.; Tokuda, I. T.; Yoshitane, H.; Matsuda, J.; Fukada, Y.

10.1101/124354 — neuroscience — Posted on 2017-12-05

1343 Naked mole-rat acid-sensing ion channel 3 forms non-functional homomers, but functional heteromers

Schuhmacher, L.-N.; Callejo, G.; Srivats, S.; Smith, E. S. J.

10.1101/166272 — neuroscience — Posted on 2017-12-05

1344 Characterizing the effects of sex, APOE 4, and literacy on mid-life cognitive trajectories: Application of Information-Theoretic model-averaging and multi-model inference techniques to the Wisconsin Registry for Alzheimer’s Prevention Study

Koscik, R. L.; Norton, D. L.; Allison, S. L.; Jonaitis, E. M.; Clark, L. R.; Mueller, K. D.; Hermann, B. P.; Engelman, C. D.; Gleason, C. E.; Sager, M. A.; Chappell, R. J.; Johnson, S. C.

10.1101/229237 — neuroscience — Posted on 2017-12-05

1345 Zika virus infection preferentially counterbalances human peripheral monocyte and/or NK-cell activity

Lum, F. M.; Lee, D.; Chua, T.-K.; Tan, J. J.; Lee, C. Y.; Liu, X.; Fang, Y.; Lee, B.; Yee, W.-X.; Rickett, N.; Chia, P.-Y.; Lim, V.; Leo, Y.-S.; Matthews, D.; Hiscox, J.; Ng, L. F.

10.1101/225102 — immunology — Posted on 2017-12-05

1346 Structurally informed evolutionary models improve phylogenetic reconstruction for emerging, seasonal, and pandemic influenza viruses

Qiu, X.; Bahl, J.

10.1101/228692 — evolutionary biology — Posted on 2017-12-05

1347 Three-way clustering of multi-tissue multi-individual gene expression data using constrained tensor decomposition

Wang, M.; Fischer, J.; Song, Y. S.

10.1101/229245 — genomics — Posted on 2017-12-05

1348 Accurate estimation of neural population dynamics without spike sorting

Trautmann, E.; Stavisky, S.; Lahiri, S.; Ames, K.; Kaufman, M.; Ryu, S.; Ganguli, S.; Shenoy, K.

10.1101/229252 — neuroscience — Posted on 2017-12-05

1349 Determining cell fate specification and genetic contribution to cardiac disease risk in hiPSC-derived cardiomyocytes at single cell resolution

Nguyen, Q.; Lukowski, S.; Chiu, H.; Friedman, C.; Senabouth, A.; Crowhurst, L.; Bruxmer, T.; Christ, A.; Palpant, N.; Powell, J.

10.1101/229336 — genomics — Posted on 2017-12-05

1350 Generation of Variation and Mean Fitness Increase: Necessity is the Mother of Genetic Invention

Ram, Y.; Altenberg, L.; Liberman, U.; Feldman, M. W.

10.1101/229351 — evolutionary biology — Posted on 2017-12-05

1351 Aging in a relativistic biological space-time

Maestrini, D.; Abler, D.; Adhikarla, V.; Armenian, S.; branciamore, s.; Carlesso, N.; Marcucci, G.; Kuo, Y.-H.; Sahoo, P.; Rockne, R.

10.1101/229161 — cancer biology — Posted on 2017-12-05

1352 Specific cholesterol binding drives drastic structural alterations in apolipoprotein A1

Ray, A.; Sengupta, S.; Thukral, L.

10.1101/228627 — biophysics — Posted on 2017-12-05

1353 Engineering Human CNS Morphogenesis: Controlled Induction of Singular Neural Rosette Emergence

Knight, G. T.; Lundin, B. F.; Iyer, N.; Ashton, L. M.; Sethares, W. A.; Willett, R. L.; Ashton, R.

10.1101/229328 — bioengineering — Posted on 2017-12-05

1354 The transcriptional dynamics of two filmy ferns from Hymenophyllaceae with different niche preferences unravel key aspects of their desiccation tolerance and vertical distribution along host trees

Larama, G.; Ostria-Gallardo, E.; Berrios, G.; Gutierrez, A.; Ensminger, I.; Bravo, L. A.

10.1101/228866 — plant biology — Posted on 2017-12-04

1355 Cell size regulation through tunable geometric localization of the bacterial actin cytoskeleton

Colavin, A.; Shi, H.; Huang, K. C.

10.1101/229286 — biophysics — Posted on 2017-12-04

1356 TIMELINE OF BRAIN ALTERATIONS IN ALZHEIMER’S DISEASE ACROSS THE ENTIRE LIFESPAN

Coupe, P.; Manjon, J. V.; Lanuza, E.; Catheline, G.

10.1101/229195 — neuroscience — Posted on 2017-12-04

1357 Neural Coding of Noisy and Reverberant Speech in Human Auditory Cortex

Puvvada, K. C.; Villafane-Delgado, M.; Brodbeck, C.; Simon, J. Z.

10.1101/229153 — neuroscience — Posted on 2017-12-04

1358 Laws of concatenated perception: Vision goes for novelty, Decisions for perseverance

Pascucci, D.; Mancuso, G.; Santandrea, E.; Della Libera, C.; Plomp, G.; Chelazzi, L.

10.1101/229187 — neuroscience — Posted on 2017-12-04

1359 Modifiable risk factors moderate the relationship between amyloid and cognition in midlife

Clark, L. R.; Koscik, R. L.; Allison, S. L.; Berman, S. E.; Carlsson, C. M.; Norton, D. L.; Bendlin, B. B.; Asthana, S.; Betthauser, T. J.; Christian, B. T.; Johnson, S. C.

10.1101/229062 — neuroscience — Posted on 2017-12-04

1360 Inhibitory networks orchestrate the self-organization of computational function in cortical microcircuit motifs through STDP

Hauesler, S.; Maass, W.

10.1101/228759 — neuroscience — Posted on 2017-12-04

1361 Longitudinal standards for mid-life cognitive performance: Identifying abnormal within-person changes in the Wisconsin Registry for Alzheimer’s Prevention

Koscik, R. L.; Jonaitis, E. M.; Clark, L. R.; Mueller, K. D.; Allison, S. L.; Gleason, C. E.; Chappell, R. J.; Hermann, B. P.; Johnson, S. C.

10.1101/229146 — neuroscience — Posted on 2017-12-04

1362 Reconciling age-related changes in behavioural and neural indices of human perceptual decision making

McGovern, D. P.; Hayes, A.; Kelly, S. P.; O'Connell, R.

10.1101/228965 — neuroscience — Posted on 2017-12-04

1363 The ventral visual pathway represents animal appearance over animacy, unlike human behavior and deep neural networks

Bracci, S.; Kalfas, I.; Op de Beeck, H.

10.1101/228932 — neuroscience — Posted on 2017-12-04

1364 Optogenetics reprogramming of planktonic cells for biofilm formation

Jin, F.; Xia, A.; Yang, S.; Huang, Y.; Jin, Z.; Ni, L.; Pu, L.; Yang, G.

10.1101/229229 — microbiology — Posted on 2017-12-04

1365 Botulinum-neurotoxin-like sequences identified from an Enterococcus sp. genome assembly

Williamson, C. H.; Smith, T. J.; Foley, B. T.; Hill, K.; Keim, P.; Sahl, J. W.

10.1101/228098 — genomics — Posted on 2017-12-04

1366 polyCluster: Defining Communities of Reconciled Cancer Subtypes with Biological and Prognostic Significance

Eason, K.; Nyamundanda, G.; Sadanandam, A.

10.1101/228551 — genomics — Posted on 2017-12-04

1367 Hybrid peeling for fast and accurate calling, phasing, and imputation with sequence data of any coverage in pedigrees

Whalen, A.; Ros-Freixedes, R.; Wilson, D. L.; Gorjanc, G.; Hickey, J. M.

10.1101/228999 — genetics — Posted on 2017-12-04

1368 Localization of adaptive variants in human genomes using averaged one-dependence estimation

Sugden, L. A.; Atkinson, E. G.; Fischer, A. P.; Rong, S.; Henn, B. M.; Ramachandran, S.

10.1101/229070 — evolutionary biology — Posted on 2017-12-04

1369 Evolution of vertical and oblique transmission under fluctuating selection

Ram, Y.; Liberman, U.; Feldman, M. W.

10.1101/229179 — evolutionary biology — Posted on 2017-12-04

1370 Genomic responses to selection for tame/aggressive behaviors in the silver fox (Vulpes vulpes)

Wang, X.; Pipes, L.; Trut, L. N.; Herbeck, Y.; Vladimirova, A. V.; Gulevich, R. G.; Kharlamova, A. V.; Johnson, J. L.; Acland, G. M.; Kukekova, A. V.; Clark, A. G.

10.1101/228544 — evolutionary biology — Posted on 2017-12-04

1371 Comparative genomics of bdelloid rotifers: evaluating the effects of asexuality and desiccation tolerance on genome evolution

Nowell, R. W.; Almeida, P.; Wilson, C. G.; Smith, T. P.; Fontaneto, D.; Crisp, A.; Micklem, G.; Tunnacliffe, A.; Boschetti, C.; Barraclough, T. G.

10.1101/226720 — evolutionary biology — Posted on 2017-12-04

1372 NEW GENOMIC DATA AND ANALYSES CHALLENGE THE TRADITIONAL VISION OF ANIMAL EPITHELIUM EVOLUTION

Belahbib, H.; Renard, E.; Santini, S.; Jourda, C.; Claverie, J.-M.; Borchiellini, C.; Le Bivic, A.

10.1101/228452 — evolutionary biology — Posted on 2017-12-04

1373 Testing Equality of Curves After Covariate Adjustment

Pal Choudhury, P.; Kundu, P.; Xue, Q.-L.; Westbrook, R.; Crainiceanu, C.

10.1101/228148 — epidemiology — Posted on 2017-12-04

1374 Antiretroviral treatment, prevention of transmission, and modeling the HIV epidemic: why the ART efficacy, coverage, and effectiveness parameters matter

Granich, R.; Gupta, S.; Wollmers, M.; Williams, B.

10.1101/228940 — epidemiology — Posted on 2017-12-04

1375 Plant-soil feedbacks between arbuscular- and ecto-mycorrhizal communities

Kadowaki, K.; Yamamoto, S.; Sato, H.; Tanabe, A. S.; Hidaka, A.; Toju, H.

10.1101/228387 — ecology — Posted on 2017-12-04

1376 Unifying intra- and inter-specific variation in tropical tree mortality

Camac, J. S.; Condit, R.; FitzJohn, R. G.; McCalman, L.; Steinberg, D.; Westoby, M.; Wright, S. J.; Falster, D. S.

10.1101/228361 — ecology — Posted on 2017-12-04

1377 Cytokine receptor-Eb1 interaction couples cell polarity and fate during asymmetric cell division

Yamashita, Y. M.; Chen, C.; Mordovanakis, A.; Hunt, A. J.; Mayer, M.; Cummings, R.; Sept, D.

10.1101/229047 — cell biology — Posted on 2017-12-04

1378 Collective cell behaviour in mechanosensing of substrate thickness

Tusan, C. G.; Man, Y. H.; Zarkoob, H.; Johnson, D. A.; Andriotis, O. G.; Thurner, P. J.; Yang, S.; Sander, E. A.; Gentleman, E.; Sengers, B.; Evans, N.

10.1101/228478 — biophysics — Posted on 2017-12-04

1379 A Multi-Species Functional Embedding Integrating Sequence and Network Structure

Leiserson, M.; Fan, J.; Cannistra, A.; Fried, I.; Lim, T.; Schaffner, T.; Crovella, M.; Hescott, B.

10.1101/229211 — bioinformatics — Posted on 2017-12-04

1380 Bioinformatics analysis quantifies neighborhood preferences of cancer cells in Hodgkin lymphoma.

Scheidel, J.; Schaefer, H.; Ackermann, J.; Hebel, M.; Schaefer, T.; Doering, C.; Hartmann, S.; Hansmann, M.-L.; Koch, I.

10.1101/228981 — bioinformatics — Posted on 2017-12-04

1381 Choice of PP1 catalytic subunit affects neither the requirement for G-actin nor the insensitivity to Sephin1 of PPP1R15A-regulated eIF2αP dephosphorylation

Crespillo-Casado, A.; Claes, Z.; Choy, M. S.; Peti, W.; Bollen, M.; Ron, D.

10.1101/228809 — biochemistry — Posted on 2017-12-04

1382 The emerging role of physical modeling in the future of structure determination

Gaalswyk, K.; Muniyat, M. I.; MacCallum, J.

10.1101/228247 — biochemistry — Posted on 2017-12-04

1383 Visual recency bias is explained by a mixture model of short term memory

Kalm, K.; Norris, D.

10.1101/228973 — animal behavior and cognition — Posted on 2017-12-04

1384 Competition and niche construction in a model of cancer metastasis

Qian, J.; Akcay, E.

10.1101/228585 — cancer biology — Posted on 2017-12-04

1385 Personalized modeling of the human gut microbiome reveals distinct bile acid deconjugation and biotransformation potential in healthy and IBD individuals

Heinken, A.; Ravcheev, D. A.; Baldini, F.; Heirendt, L.; Fleming, R. M.; Thiele, I.

10.1101/229138 — systems biology — Posted on 2017-12-04

1386 Organisation of the transcriptional regulation of genes involved in protein transactions in yeast

Dikicioglu, D.; Nightingale, D. J. H.; Wood, V.; Lilley, K. S.; Oliver, S. G.

10.1101/229039 — systems biology — Posted on 2017-12-04

1387 Natural Variation of OsLG3 Controls Drought Stress Tolerance in Rice by Inducing ROS Scavenging

Xiong, H.; Yu, J.; Li, J.; Wang, X.; Liu, P.; Zhang, H.; Zhao, Y.; Yin, Z.; Li, Y.; Guo, Y.; Fu, B.; Wang, W.; Li, Z.; Ali, J.; Li, Z.

10.1101/228403 — plant biology — Posted on 2017-12-04

1388 The hydrophobin-like OmSSP1 may be an effector in the ericoid mycorrhizal symbiosis

Casarrubia, S.; Daghino, S.; Kohler, A.; Morin, E.; Khouja, H.-R.; Daguerre, Y.; Veneault-Fourrey, C.; Martin, F. M.; Perotto, S.; Martino, E.

10.1101/227959 — plant biology — Posted on 2017-12-04

1389 Time-resolved analyses of elemental distribution and concentration in living plants: An example using manganese toxicity in cowpea leaves

Blamey, P.; Paterson, D.; Walsh, A.; Afshar, N.; McKenna, B.; Cheng, M.; Tang, C.; Menzies, N.; Kopittke, P.

10.1101/228577 — plant biology — Posted on 2017-12-04

1390 A quantitative model for characterizing the evolutionary history of mammalian gene expression

Chen, J.; Swofford, R.; Johnson, J.; Cummings, B. B.; Rogel, N.; Lindblad-Toh, K.; Haerty, W.; di Palma, F.; Regev, A.

10.1101/229096 — genomics — Posted on 2017-12-04

1391 Regionalization of the nervous system requires axial allocation prior to neural lineage commitment

Metzis, V.; Steinhauser, S.; Pakanavicius, E.; Gouti, M.; Stamataki, D.; Lovell-Badge, R.; Luscombe, N. M.; Briscoe, J.

10.1101/229203 — developmental biology — Posted on 2017-12-04

1392 Estimating global enzyme abundance levels from cofactor requirements: a model-based analysis of the iron metabolism in yeast

Dikicioglu, D.; Oliver, S. G.

10.1101/229104 — systems biology — Posted on 2017-12-04

1393 Multiple sources of slow activity fluctuations in a bacterial chemosensory network

Colin, R.; Rosazza, C.; Vaknin, A.; Sourjik, V.

10.1101/123935 — systems biology — Posted on 2017-12-04

1394 Laccaria bicolor MiSSP8 is a small-secreted protein decisive for the establishment of the ectomycorrhizal symbiosis

Pellegrin, C.; Daguerre, Y.; Ruytinx, J.; Guinet, F.; Kemppainen, M.; Plourde, M. B.; Hecker, A.; Morin, E.; Pardo, A. G.; Germain, H.; Martin, F. M.; Veneault-Fourrey, C.

10.1101/218131 — plant biology — Posted on 2017-12-04

1395 Disrupting myeloid-specific LXRα phosphorylation promotes FoxM1 expression and modulates atherosclerosis by inducing macrophage proliferation

Gage, M. C.; Becares-Salles, N.; Louie, R.; Waddington, K.; Zhang, Y.; Tittanegro, T.; Rodriguez-Lorenzo, S.; Jathanna, A.; Pourcet, B.; Pello, O. M.; De la Rosa, J. V.; Castrillo, A.; Pineda Torra, I.

10.1101/228783 — physiology — Posted on 2017-12-04

1396 Non-blocking modulation contributes to sodium channel inhibition by a covalently attached photoreactive riluzole analog

Lukacs, P.; Foldi, M. C.; Valanszki, L.; Casanova, E.; Biri-Kovacs, B.; Nyitray, L.; Malnasi-Csizmadia, A.; Mike, A.

10.1101/228684 — pharmacology and toxicology — Posted on 2017-12-04

1397 Non-blocking modulation as the major mechanism of sodium channel inhibition by riluzole

Szabo, A. K.; Pesti, K.; Lukacs, P.; Foldi, M. C.; Gerevich, Z.; Sperlagh, B.; Mike, A.

10.1101/228569 — pharmacology and toxicology — Posted on 2017-12-04

1398 The Brain/MINDS 3D digital marmoset brain atlas

Woodward, A.; Hashikawa, T.; Maeda, M.; Kaneko, T.; Hikishima, K.; Iriki, A.; Okano, H.; Yamaguchi, Y.

10.1101/228676 — neuroscience — Posted on 2017-12-04

1399 Suppressed sensory response to predictable object stimuli throughout the ventral visual stream

Richter, D.; Ekman, M.; de Lange, F. P.

10.1101/228890 — neuroscience — Posted on 2017-12-04

1400 A weighted graph of the projections to mouse auditory cortex

da Costa, N. M.; Martin, K. A. C.; Sägesser, F. D.

10.1101/228726 — neuroscience — Posted on 2017-12-04

1401 Neural Computations Underlying Causal Structure Learning

Tomov, M.; Gershman, S.; Dorfman, H.

10.1101/228593 — neuroscience — Posted on 2017-12-04

1402 Activation Of Piezo1 But Not Nav1.2 Channels By Ultrasound at 43 MHz

Prieto, M. L.; Firouzi, K.; Khuri-Yakub, B. T.; Maduke, M.

10.1101/136994 — neuroscience — Posted on 2017-12-04

1403 Suppression of the dihydrolipoamide dehydrogenase gene (dld-1) protects against the toxicity of human amyloid beta in C. elegans model of Alzheimer’s disease

Ahmad, W.

10.1101/228429 — neuroscience — Posted on 2017-12-04

1404 Control of recollection by slow gamma dominating mid-frequency gamma in hippocampus CA1

Dvorak, D.; Radwan, B.; Sparks, F. T.; Talbot, Z. N.; Fenton, A. A.

10.1101/152488 — neuroscience — Posted on 2017-12-04

1405 An individual differences approach to semantic cognition: Divergent effects of age on representation, retrieval and selection

Hoffman, P.

10.1101/182170 — neuroscience — Posted on 2017-12-04

1406 Neural Computations Underlying Causal Structure Learning

Tomov, M.; Dorfman, H.; Gershman, S.

10.1101/228593 — neuroscience — Posted on 2017-12-04

1407 Failure through expanding voids in bacterial streamers

Biswas, I.; Ghosh, R.; Sadrzadeh, M.; Kumar, A.

10.1101/225367 — biophysics — Posted on 2017-12-04

1408 RIFRAF: a frame-resolving consensus algorithm

Eren, K.; Murrell, B.

10.1101/227520 — bioinformatics — Posted on 2017-12-04

1409 Organization of Neural Population Code in Mouse Visual System

Esfahany, K.; Siergiej, I.; Zhao, Y.; Park, I. M.

10.1101/220558 — neuroscience — Posted on 2017-12-04

1410 Pneumococcal vaccine impacts on the population genomics of non-typeable Haemophilus influenzae

Cleary, D. W.; Devine, V. T.; Morris, D. E.; Osman, K. L.; Gladstone, R. A.; Bentley, S. D.; Faust, S. N.; Clarke, S. C.

10.1101/228791 — microbiology — Posted on 2017-12-04

1411 Accurate Determination of Bacterial Abundances in Human Metagenomes Using Full-length 16S Sequencing Reads

Perraudeau, F.; Dudoit, S.; Bullard, J. H.

10.1101/228619 — microbiology — Posted on 2017-12-04

1412 Electron microscopy reveals unique nano forms of bacterial spores

Ghosh, S.; Chakraborty, B.; Dey, S.; Biswas, C.; Chowdhury, R.; Chattopadhyay, K.; Sengupta, J.

10.1101/228833 — microbiology — Posted on 2017-12-04

1413 Evolution of carbapenem resistance in Acinetobacter baumannii during a prolonged infection

Hawkey, J.; Ascher, D. B.; Judd, L.; Wick, R. R.; Kostoulias, X.; Cleland, H.; Spelman, D. W.; Padiglione, A.; Peleg, A. Y.; Holt, K. E.

10.1101/228668 — genomics — Posted on 2017-12-04

1414 polymapR: linkage analysis and genetic map construction from F1 populations of outcrossing polyploids

Bourke, P.; van Geest, G.; Voorrips, R. E.; Jansen, J.; Kranenburg, T.; Shahin, A.; Visser, R. G. F.; Arens, P.; Smulders, M. J. M.; Maliepaard, C.

10.1101/228817 — genetics — Posted on 2017-12-04

1415 Structurally informed evolutionary models improve phylogenetic reconstruction for emerging, seasonal, and pandemic influenza viruses

Qiu, X.; Bahl, J.

10.1101/228692 — evolutionary biology — Posted on 2017-12-04

1416 Reconstruction of body mass evolution in the Cetartiodactyla and mammals using phylogenomic data

Figuet, E.; Ballenghien, M.; Lartillot, N.; Galtier, N.

10.1101/139147 — evolutionary biology — Posted on 2017-12-04

1417 Renewed diversification following Miocene landscape turnover in a Neotropical butterfly radiation

Chazot, N.; Willmott, K. R.; Lamas, G.; Freitas, A. V. L.; Piron-Prunier, F.; Arias, C. F.; Mallet, J.; De-Silva, D. L.; Elias, M.

10.1101/148189 — evolutionary biology — Posted on 2017-12-04

1418 Whole Genome Sequences Of Malawi Cichlids Reveal Multiple Radiations Interconnected By Gene Flow

Malinsky, M.; Svardal, H.; Tyers, A. M.; Miska, E. A.; Genner, M. J.; Turner, G. F.; Durbin, R.

10.1101/143859 — evolutionary biology — Posted on 2017-12-04

1419 Identifying Important Interaction Modifications in Ecological Systems

Terry, C.; Bonsall, M. B.; Morris, R. J.

10.1101/228874 — ecology — Posted on 2017-12-04

1420 On Model Averaging Partial Regression Coefficients

Walker, J. A.

10.1101/133785 — ecology — Posted on 2017-12-04

1421 Increasing Eukaryotic Initiation Factor 6 (eIF6) Gene Dosage Stimulates Global Translation and Induces a Transcriptional and Metabolic Rewiring that Blocks Programmed Cell Death

Russo, A.; Gatti, G.; Alfieri, R.; Pesce, E.; Soanes, K.; Ricciardi, S.; Cheroni, C.; Vaccari, T.; Biffo, S.; Calamita, P.

10.1101/201558 — developmental biology — Posted on 2017-12-04

1422 Recovery of equilibrium free energy from non-equilibrium thermodynamics with mechanosensitive ion channels in E. coli

Cetiner, U.; Raz, O.; Sukharev, S.; Jarzynski, C.

10.1101/229088 — biophysics — Posted on 2017-12-04

1423 A "Tug of War" maintains a dynamic protein-membrane complex as shown in all-atom simulations of C-Raf RBD-CRD bound to K-Ras4B at an anionic membrane

Li, Z.; Prakash, P.; Buck, M.

10.1101/181347 — biophysics — Posted on 2017-12-04

1424 Endogenous α-SYN protein analysis from human brain tissues using single-molecule pull-down assay

Je, G.; Croop, B.; Basu, S.; Tang, J.; Han, K. Y.; Kim, Y.-S.

10.1101/188169 — biophysics — Posted on 2017-12-04

1425 CONFOLD2: Improved contact-driven ab initio protein structure modeling

Adhikari, B.; Cheng, J.

10.1101/228460 — bioinformatics — Posted on 2017-12-04

1426 Unsupervised clustering and epigenetic classification of single cells

Zamanighomi, M.; Lin, Z.; Daley, T.; Chen, X.; Duren, Z.; Schep, A.; Greenleaf, W. J.; Wong, W. H.

10.1101/143701 — bioinformatics — Posted on 2017-12-04

1427 Balances: a new perspective for microbiome analysis

Rivera Pinto, J.; Egozcue, J. J.; Pawlowsky-Glahn, V.; Paredes, R.; Noguera-Julian, M.; Calle, M. L.

10.1101/219386 — bioinformatics — Posted on 2017-12-04

1428 A myopic perspective on the future of protein diagnostics

Landegren, U.; Al-Amin, R. A.; Bjorkesten, J.

10.1101/227728 — biochemistry — Posted on 2017-12-04

1429 A-to-I RNA editing uncovers hidden signals of adaptive genome evolution in animals

Popitsch, N.; Huber, C. D.; Buchumenski, I.; Eisenberg, E.; Jantsch, M.; von Haeseler, A.; Gallach, M.

10.1101/228734 — evolutionary biology — Posted on 2017-12-04

1430 Defining the relevant combinatorial space of the PKC/CARD-CC signal transduction nodes

Staal, J.; Driege, Y.; Haegman, M.; Iliaki, S.; Beyaert, R.

10.1101/228767 — systems biology — Posted on 2017-12-04

1431 Enhancing Cas9 Activity in Heterochromatin

Daer, R.; Barrett, C.; Haynes, K.

10.1101/228601 — synthetic biology — Posted on 2017-12-04

1432 A zinc-finger fusion protein refines Gal4-defined neural circuits

Varija Raghu, S.; Mohammad, F.; Chua, J. Y.; Barros, C.; Lam, J.; Loberas, M.; Sahani, S.; Claridge-Chang, A.

10.1101/228718 — neuroscience — Posted on 2017-12-04

1433 Transcription activation domains of the yeast factors Met4 and Ino2: tandem activation domains with properties similar to the yeast Gcn4 activator

Pacheco, D.; warfield, l.; brajcich, m.; robbins, h.; luo, j.; ranish, j.; Hahn, S.

10.1101/228536 — molecular biology — Posted on 2017-12-04

1434 Complete mitochondrial genome of Glomeridesmus spelaeus (Diplopoda), a troglobitic species from Carajas iron-ore caves (Para, Brazil)

Nunes, G. L.; Oliveira, R. R. M.; Pires, E. S.; Vasconcelos, S.; Pietrobon, T.; Prous, X.; Oliveira, G.

10.1101/228882 — genomics — Posted on 2017-12-04

1435 Targeted RNA knockdown by crRNA guided Csm in zebrafish

Fricke, T.; Tamulaitis, G.; Smalakyte, D.; Pastor, M.; Kolano, A.; Siksnys, V.; Bochtler, M.

10.1101/228775 — genetics — Posted on 2017-12-04

1436 KDM2B is a histone H3K79 demethylase and induces transcriptional repression via SIRT1-mediated chromatin silencing

Seo, S. B.; Kang, J.-Y.; Kim, J.-Y.; Kim, K.-B.; Park, J. W.; Cho, H.; Hahm, J. Y.; Chae, Y.-C.; Kim, D.; Kook, H.; Rhee, S.; Ha, N.-C.

10.1101/228379 — genetics — Posted on 2017-12-04

1437 Dynamic copy number evolution of X- and Y-linked ampliconic genes in human populations

Lucotte, E. A.; Skov, L.; Coll Macia, M.; Munch, K.; Schierup, M. H.

10.1101/228841 — evolutionary biology — Posted on 2017-12-04

1438 The promiscuous estrogen receptor: evolution of physiological estrogens and response to phytochemicals and endocrine disruptors

Baker, M. E.; Lathe, R.

10.1101/228064 — physiology — Posted on 2017-12-04

1439 Glucose facilitates Aβ oligomerization and tau phosphorylation in C. elegans model of Alzheimer’s disease

Ahmad, W.

10.1101/228437 — neuroscience — Posted on 2017-12-03

1440 Systematic genetic interaction studies identify histone demethylase Utx as potential target for ameliorating Huntington’s disease

Song, W.; Zsindely, N.; Farago, A.; Marsh, J. L.; Bodai, L.

10.1101/228486 — neuroscience — Posted on 2017-12-03

1441 Static length changes of cochlear outer hair cells can tune low-frequency hearing

Ciganovic, N.; Warren, R. L.; Keceli, B.; Jacob, S.; Fridberger, A.; Reichenbach, T.

10.1101/228353 — biophysics — Posted on 2017-12-03

1442 Reassessing the evolution of strigolactone synthesis and signalling

Walker, C.; Bennett, T.

10.1101/228320 — plant biology — Posted on 2017-12-03

1443 Fast Intensity Adaptation Enhances the Encoding of Sound in Drosophila

Clemens, J.; Ozeri-Engelhard, N.; Murthy, M.

10.1101/228213 — neuroscience — Posted on 2017-12-03

1444 Decoding affective states across databases using functional near-infrared spectroscopy

Trambaiolli, L.; Tossato, J.; Cravo, A.; Biazoli, C.; Sato, J.

10.1101/228007 — neuroscience — Posted on 2017-12-03

1445 The physiological regulation of macropinocytosis during Dictyostelium growth and development

Williams, T.; Kay, R. R.

10.1101/227983 — microbiology — Posted on 2017-12-03

1446 Systemizing is genetically correlated with autism and is genetically distinct from social autistic traits

Warrier, V.; Toro, R.; Chakrabarti, B.; iPSYCH-Broad Autism Group, ; Borglum, A.; Grove, J.; the 23andMe Research Team, ; Hinds, D.; Bourgeron, T.; Baron-Cohen, S.

10.1101/228254 — genetics — Posted on 2017-12-03

1447 ProteomeVis: a web app for exploration of protein properties from structure to sequence evolution across organisms’ proteomes

Gilson, A.; Durfee, N.; Razban, R.; Strobelt, H.; Kinkla, K.; Choi, J.-M.; Pfister, H.; Shakhnovich, E.

10.1101/227827 — evolutionary biology — Posted on 2017-12-03

1448 Metabolic traits predict the effects of warming on phytoplankton competition

Bestion, E.; Garcia-Carreras, B.; Schaum, C.-E.; Pawar, S.; Yvon-Durocher, G.

10.1101/227868 — ecology — Posted on 2017-12-03

1449 Fibroblast Growth Factor 2 lethally sensitizes cancer cells to stress-targeted therapeutic inhibitors

Dias, M. H.; Fonseca, C. S.; Zeidler, J. D.; Albuquerque, L. L.; da Silva, M. S.; Cararo-Lopes, E.; Reis, M. S.; Noel, V.; Prior, I. A.; Armelin, H. A.

10.1101/227496 — cancer biology — Posted on 2017-12-03

1450 On-line Optimization of Hamiltonian Replica Exchange Simulations

MacCallum, J.; Gaalswyk, K.; Muniyat, M. I.

10.1101/228262 — biophysics — Posted on 2017-12-03

1451 Dynamical model of the CLC-2 ion channel exhibits a two-step gating mechanism

McKiernan, K. A.; Koster, A. K.; Maduke, M.; Pande, V. S.

10.1101/228163 — biophysics — Posted on 2017-12-03

1452 In silico and in vitro screening of FDA-approved drugs for potential repurposing against tuberculosis

Brindha, S.; Sundaramurthi, J. C.; Vincent, S.; Velmurugan, D.; Gnanadoss, J. J.

10.1101/228171 — bioinformatics — Posted on 2017-12-03

1453 RIFRAF: a frame-resolving consensus algorithm

Eren, K.; Murrell, B.

10.1101/227520 — bioinformatics — Posted on 2017-12-03

1454 Altered transcription factor binding events predict personalized gene expression and confer insight into functional cis-regulatory variants

Shi, W. W.; Fornes, O.; Wasserman, W. W.

10.1101/228155 — bioinformatics — Posted on 2017-12-03

1455 Does relaxing the infinite sites assumption give better tumor phylogenies? An ILP-based comparative approach

Bonizzoni, P.; Ciccolella, S.; Della Vedova, G.; Soto, M.

10.1101/227801 — bioinformatics — Posted on 2017-12-03

1456 Unsupervised correction of gene-independent cell responses to CRISPR-Cas9 targeting

Iorio, F.; Behan, F. M.; Goncalves, E.; Beaver, C.; Ansari, R.; Pooley, R.; Wilkinson, P.; Harper, S.; Stronach, E.; Saez-Rodriguez, J.; Yusa, K.; Garnett, M. J.

10.1101/228189 — bioinformatics — Posted on 2017-12-03

1457 Interpretation of biological experiments changes with evolution of Gene Ontology and its annotations

Tomczak, A.; Mortensen, J. M.; Winnenburg, R.; Liu, C.; Alessi, D. T.; Swamy, V.; Vallania, F.; Lofgren, S.; Haynes, W. A.; Shah, N. H.; Musen, M. A.; Khatri, P.

10.1101/228080 — bioinformatics — Posted on 2017-12-03

1458 Interleukin-4 restores neurogenic plasticity of the primary human neural stem cells through suppression of Kynurenic acid production upon Amyloid-β42 toxicity

Papadimitriou, C.; Celikkaya, H.; Cosacak, M. I. I.; Mashkaryan, V.; Bhattarai, P.; Lin, W.; Thomas, A.; Zhang, Y.; Freudenberg, U.; Werner, C.; Kizil, C.

10.1101/227306 — neuroscience — Posted on 2017-12-03

1459 Overestimating environmental volatility increases switching behavior and is linked to activation of dorsolateral prefrontal cortex in schizophrenia

Deserno, L.; Boehme, R.; Mathys, C.; Katthagen, T.; Kaminski, J.; Stephan, K. E.; Heinz, A.; Schlagenhauf, F.

10.1101/227967 — neuroscience — Posted on 2017-12-03

1460 Subthalamic nucleus neurons differentially encode early and late aspects of speech production

Lipski, W. J.; Alhourani, A.; Pirnia, T.; Jones, P. W.; Dastolfo-Hromack, C.; Helou, L. B.; Crammond, D. J.; Shaiman, S.; Dickey, M. W.; Holt, L. L.; Fiez, J. A.; Turner, R. S.; Richardson, R. M.

10.1101/227793 — neuroscience — Posted on 2017-12-03

1461 Neuronal glutamate transporters control dopaminergic signaling and compulsive behaviors

Bellini, S.; Fleming, K. E.; De, M.; McCauley, J. P.; Petroccione, M. A.; D'Brant, L. Y.; Tkachenko, A.; Kwon, S.; Jones, L. A.; Scimemi, A.

10.1101/224477 — neuroscience — Posted on 2017-12-03

1462 Quantifying and visualising divergence between pairs of phylogenetic trees: implications for phylogenetic reconstruction

Smith, M. R.

10.1101/227942 — evolutionary biology — Posted on 2017-12-03

1463 Ecological, angler and spatial heterogeneity drive social and ecological outcomes in an integrated landscape model of freshwater recreational fisheries

Matsumura, S.; Beardmore, B.; Haider, W.; Dieckmann, U.; Arlinghaus, R.

10.1101/227744 — ecology — Posted on 2017-12-03

1464 Combined aptamer and transcriptome sequencing of single cells

Delley, C. L.; Liu, L.; Sarhan, M. F.; Abate, A. R.

10.1101/228338 — cell biology — Posted on 2017-12-03

1465 GrandPrix: Scaling up the Bayesian GPLVM for single-cell data

Ahmed, S.; Rattray, M.; Boukouvalas, A.

10.1101/227843 — bioinformatics — Posted on 2017-12-03

1466 A novel method for estimating LDC levels: total cholesterol and non-HDLC can be used to predict the normal LDLC level in apparently healthy population

Zhang, G.-M.; Bai, S.; Zhang, G.-M.; Ma, X.-B.

10.1101/228130 — biochemistry — Posted on 2017-12-03

1467 Deciphering microbial interactions in synthetic human gut microbiome communities

Venturelli, O. S.; Carr, A. C.; Fisher, G.; Hsu, R. H.; Lau, R.; Bowen, B. P.; Northen, T.; Arkin, A. P.

10.1101/228395 — systems biology — Posted on 2017-12-03

1468 A prediction model of working memory across health and psychiatric disease using whole-brain functional connectivity

Yamashita, M.; Yoshihara, Y.; Hashimoto, R.; Yahata, N.; Ichikawa, N.; Sakai, Y.; Yamada, T.; Matsukawa, N.; Okada, G.; Tanaka, S. C.; Kasai, K.; Kato, N.; Okamoto, Y.; Seymour, B.; Takahashi, H.; Kawato, M.; Imamizu, H.

10.1101/222281 — neuroscience — Posted on 2017-12-03

1469 Variable Selection in Heterogeneous Datasets: A Truncated-rank Sparse Linear Mixed Model with Applications to Genome-wide Association Studies

Wang, H.; Aragam, B.; Xing, E. P.

10.1101/228106 — genomics — Posted on 2017-12-03

1470 Multiplex Confounding Factor Correction for Genomic Association Mapping with Squared Sparse Linear Mixed Model

Wang, H.; Liu, X.; Xiao, Y.; Xu, M.; Xing, E. P.

10.1101/228114 — genomics — Posted on 2017-12-03

1471 Cancer subtype identification using somatic mutation data

Kuijjer, M. L.; Paulson, J. N.; Salzman, P.; Ding, W.; Quackenbush, J.

10.1101/228031 — genomics — Posted on 2017-12-03

1472 Towards simple kinetic models of functional dynamics for a kinase subfamily

Sultan, M. M.; Kiss, G.; Pande, V.

10.1101/228528 — biophysics — Posted on 2017-12-03

1473 MetaRiPPquest: A Peptidogenomics Approach for the Discovery of Ribosomally Synthesized and Post-translationally Modified Peptides

Mohimani, H.; Gurevich, A.; Alexander, K. L.; Naman, C. B.; Leao, T.; Glukhov, E.; Moss, N. A.; Luzzatto Knaan, T.; Vargas, F.; Nothias, L.-F.; Singh, N. K.; Sanders, J. G.; Benitez, R. A. S.; Thompson, L. R.; Hamid, M. N.; Morton, J. T.; Mikheenko, A.; Shlemov, A.; Korobeynikov, A.; Friedberg, I.; Knight, R.; Venkateswaran, K.; Gerwick, W.; Gerwick, L.; Dorrestein, P. C.; Pevzner, P. A.

10.1101/227504 — bioinformatics — Posted on 2017-12-03

1474 Identification of jellyfish neuropeptides that act directly as oocyte maturation inducing hormones

Takeda, N.; Kon, Y.; Quiroga Artigas, G.; Lapebie, P.; Barreau, C.; Koizumi, O.; Kishimoto, T.; Tachibana, K.; Houliston, E.; Deguchi, R.

10.1101/140160 — developmental biology — Posted on 2017-12-03

1475 A gonad-expressed opsin mediates light-induced spawning in the jellyfish Clytia

Quiroga Artigas, G.; Lapebie, P.; Leclere, L.; Takeda, N.; Deguchi, R.; Jekely, G.; Momose, T.; Houliston, E.

10.1101/140210 — evolutionary biology — Posted on 2017-12-03

1476 Rehabilitation promotes the recovery of functional and structural features of healthy neuronal networks after stoke

ALLEGRA MASCARO, A. L.; Conti, E.; Lai, S.; Di Giovanna, A. P.; Spalletti, C.; Alia, C.; Quarta, E.; Panarese, A.; Sacconi, L.; Micera, S.; Caleo, M.; Pavone, F. S.

10.1101/141697 — neuroscience — Posted on 2017-12-03

1477 A unifying motif for spatial and directional surround suppression

Liu, L. D.; Miller, K. D.; Pack, C. C.

10.1101/180125 — neuroscience — Posted on 2017-12-03

1478 Precise excitation-inhibition balance controls gain and timing in hippocampus

Bhatia, A.; Moza, S.; Bhalla, U. S.

10.1101/190298 — neuroscience — Posted on 2017-12-03

1479 The Molecular Engram of Procedural Motor Skill Memories resides in Layer 5 of the Primary Motor cortex

Gao, P. P.; Goodman, J. H.; Sacktor, T. C.; Francis, J. T.

10.1101/193508 — neuroscience — Posted on 2017-12-03

1480 Assessing the Landscape of U.S. Postdoctoral Salaries

Athanasiadou, R.; Bankston, A.; Carlisle, M.; Niziolek, C.; McDowell, G. S.

10.1101/227694 — scientific communication and education — Posted on 2017-12-03

1481 Reducing gravity takes the bounce out of running

Polet, D. T.; Schroeder, R. T.; Bertram, J. E. A.

10.1101/123745 — physiology — Posted on 2017-12-03

1482 Drosophila have distinct activity-gated pathways that mediate attraction and aversion to CO2

van Breugel, F.; Huda, A.; Dickinson, M. H.

10.1101/227991 — neuroscience — Posted on 2017-12-03

1483 Unlocking the biological potential of Euglena gracilis: evolution, cell biology and significance to parasitism

Euglena Genome Consortium, ; Field, M.

10.1101/228015 — evolutionary biology — Posted on 2017-12-03

1484 Nestin in immature embryonic neurons regulates axon growth cone morphology and Sema3a sensitivity

Bott, C. J.; Johnson, C. G.; Yap, C. C.; Dwyer, N. D.; Newell-Litwa, K.; Winckler, B.

10.1101/228296 — cell biology — Posted on 2017-12-03

1485 Spatial organization and dynamics of RNase E and ribosomes in Caulobacter crescentus

Bayas, C. A.; Wang, J.; Lee, M. K.; Schrader, J. M.; Shapiro, L.; Moerner, W. E.

10.1101/228122 — biophysics — Posted on 2017-12-03

1486 Phylogenomics places orphan protistan lineages in a novel eukaryotic super-group

Brown, M. W.; Heiss, A.; Kamikawa, R.; Inagaki, Y.; Yabuki, A.; Tice, A. K.; Shiratori, T.; Ishida, K.; Hashimoto, T.; Simpson, A. G. B.; Roger, A. J.

10.1101/227884 — evolutionary biology — Posted on 2017-12-03

1487 Quantitative Imaging of Receptor-Ligand Engagement in Intact Live Animals

Rudkouskaya, A.; Sinsuebphon, N.; Ward, J.; Tubbesing, K.; Intes, X.; Barroso, M.

10.1101/228072 — cancer biology — Posted on 2017-12-03

1488 A 16S rRNA gene sequencing and analysis protocol for the Illumina MiniSeq platform

Pichler, M.; Coskun, O. K.; Ortega, A. S.; Conci, N.; Wörheide, G.; Vargas, S.; Orsi, W. D.

10.1101/227108 — microbiology — Posted on 2017-12-02

1489 Comprehensive, Integrated, and Phased Whole-Genome Analysis of the Primary ENCODE Cell Line K562

Zhou, B.; Ho, S. S.; Zhu, X.; Zhang, X.; Spies, N.; Byeon, S.; Arthur, J. G.; Pattni, R.; Ben-Efraim, N.; Haney, M. S.; Haraksingh, R. R.; Song, G.; Perrin, D.; Wong, W. H.; Abyzov, A.; Urban, A. E.

10.1101/192344 — genomics — Posted on 2017-12-02

1490 HOME: A histogram based machine learning approach for effective identification of differentially methylated regions

Srivastava, A.; Karpievitch, Y. V.; Eichten, S. R.; Borevitz, J. O.; Lister, R.

10.1101/228221 — bioinformatics — Posted on 2017-12-02

1491 Real-time halo correction in phase contrast imaging

Kandel, M. E.; Fanous, M.; Best-Popescu, C.; Popescu, G.

10.1101/227025 — bioengineering — Posted on 2017-12-02

1492 Assessing Selectivity in the Basal Ganglia: The "Gearbox" Hypothesis

Fountas, Z.; Shanahan, M.

10.1101/197129 — neuroscience — Posted on 2017-12-02

1493 Dihydrolipoamide dehydrogenase suppression induce human tau phosphorylation by increasing whole body glucose levels in a C. elegans model of Alzheimer’s Disease

Ahmad, W.

10.1101/220442 — neuroscience — Posted on 2017-12-02

1494 Streptococcus pyogenes infection and the human proteome with a special focus on the IgG-cleaving enzyme IdeS

Karlsson, C. A. Q.; Järnum, S.; Winstedt, L.; Kjellman, C.; Björck, L.; Linder, A.; Malmström, J. A.

10.1101/214890 — microbiology — Posted on 2017-12-02

1495 Family-based association analysis identifies variance-controlling loci without confounding by genotype-environment correlations

Conley, D.; Johnson, R. A.; Domingue, B. W.; Dawes, C.; Boardman, J.; Siegal, M.

10.1101/175596 — genetics — Posted on 2017-12-02

1496 Genomic imprinting mediates dosage compensation in a young plant XY system

Muyle, A.; Zemp, N.; Fruchard, C.; Cegan, R.; Vrana, J.; Deschamps, C.; Tavares, R.; Picard, F.; Hobza, R.; Widmer, A.; Marais, G.

10.1101/179044 — evolutionary biology — Posted on 2017-12-02

1497 Connexin 43 K63-polyubiquitination on lysines 264 and 303 regulates gap junction internalization

Kells-Andrews, R. M.; Margraf, R. A.; Fisher, C. G.; Falk, M. M.

10.1101/211607 — cell biology — Posted on 2017-12-02

1498 Local and population-level responses of Greater sage-grouse to oil and gas and climatic variation in Wyoming

Ramey, R. R.; Thorley, J. L.; Ivey, A. S.

10.1101/028274 — ecology — Posted on 2017-12-02

1499 Genetic architecture drives seasonal onset of hibernation in the 13-lined ground squirrel

Grabek, K. R.; Cooke, T. F.; Epperson, L. E.; Spees, K. K.; Cabral, G. F.; Sutton, S. C.; Merriman, D. K.; Martin, S. L.; Bustamante, C. D.

10.1101/222307 — genetics — Posted on 2017-12-02

1500 Analysis of archaic human haplotypes suggest 5-hmC to act as epigenetic guide for meiotic point recombination

Lee, B.; Cyrill, S.; Lee, W.; Melchiotti, R.; Andiappan, A.; Poidinger, M.; Rotzschke, O.

10.1101/227702 — evolutionary biology — Posted on 2017-12-02

1501 Decoding the regulatory logic of the Drosophila male stem cell system

Papagiannouli, F.; Tamirisa, S.; Rempel, E.; Ermakova, O.; Trost, N.; Zhou, J.; Mundorf, J.; Brunel, S.; Ruhland, N.; Boutros, M.; Lohmann, J. U.; Lohmann, I.

10.1101/227876 — developmental biology — Posted on 2017-12-02

1502 C-type lectin-like receptor 2 (CLEC-2)-dependent DC migration is controlled by tetraspanin CD37

de Winde, C. M.; Matthews, A. L.; van Deventer, S.; van der Schaaf, A.; Tomlinson, N. D.; Yang, J.; Jansen, E.; Eble, J. A.; Nieswandt, B.; McGettrick, H. M.; Figdor, C. G.; Acton, S. E.; Tomlinson, M. G.; van Spriel, A. B.

10.1101/227918 — cell biology — Posted on 2017-12-02

1503 CytoGAN: Generative Modeling of Cell Images

Goldsborough, P.; Pawlowski, N.; Caicedo, J. C.; Singh, S.; Carpenter, A.

10.1101/227645 — bioinformatics — Posted on 2017-12-02

1504 Natively Oxidized Amino Acid Residues in the Spinach Cytochrome b6f Complex

Bricker, T. M.; Taylor, R. M.; Sallans, L.; Frankel, L. K.

10.1101/227835 — biochemistry — Posted on 2017-12-02

1505 Multi-scale model of the proteomic and metabolic consequences of reactive oxygen species

Yang, L.; Mih, N.; Yurkovich, J. T.; Park, J. H.; Seo, S.; Kim, D.; Monk, J. M.; Lloyd, C. J.; Tan, J.; Gao, Y.; Broddrick, J. T.; Chen, K.; Heckmann, D.; Feist, A. M.; Palsson, B. O.

10.1101/227892 — systems biology — Posted on 2017-12-02

1506 Exploring Drivers of Gene Expression in The Cancer Genome Atlas

Rau, A.; Flister, M. J.; Rui, H.; Livermore Auer, P.

10.1101/227926 — cancer biology — Posted on 2017-12-02

1507 Visualizing Transitions and Structure for High Dimensional Data Exploration

Moon, K. R.; van Dijk, D.; Wang, Z.; Burkhardt, D.; Chen, W.; van den Elzen, A.; Hirn, M. J.; Coifman, R. R.; Ivanova, N. B.; Wolf, G.; Krishnaswamy, S.

10.1101/120378 — bioinformatics — Posted on 2017-12-01

1508 Discovery of physiological and cancer-related regulators of 3’ UTR processing with KAPAC

Gruber, A. J.; Schmidt, R.; Ghosh, S.; Martin, G.; Gruber, A. R.; van Nimwegen, E.; Zavolan, M.

10.1101/195958 — systems biology — Posted on 2017-12-01

1509 Engineering a Functional small RNA Negative Autoregulation Network with Model-guided Design

Hu, C.; Takahashi, M.; Zhang, Y.; Lucks, J.

10.1101/227637 — synthetic biology — Posted on 2017-12-01

1510 Bringing plants and soils to life through a simple role-playing activity

Van Nuland, M. E.; Chen, M.; England, B. J.

10.1101/171009 — scientific communication and education — Posted on 2017-12-01

1511 The GSS is an unreliable indicator of biological sciences postdoc population trends

Pickett, C.; Bankston, A.; McDowell, G. S.

10.1101/171314 — scientific communication and education — Posted on 2017-12-01

1512 A design framework and exemplar metrics for FAIRness

Wilkinson, M. D.; Sansone, S.-A.; Schultes, E.; Doorn, P.; Bonino da Silva Santos, L. O.; Dumontier, M.

10.1101/225490 — scientific communication and education — Posted on 2017-12-01

1513 Control of recollection by slow gamma dominating medium gamma in hippocampus CA1

Dvorak, D.; Radwan, B.; Sparks, F. T.; Talbot, Z. N.; Fenton, A. A.

10.1101/152488 — neuroscience — Posted on 2017-12-01

1514 Adaptive History Biases Result from Confidence-weighted Accumulation of Past Choices

Braun, A.; Urai, A. E.; Donner, T. H.

10.1101/172049 — neuroscience — Posted on 2017-12-01

1515 A note on the analysis of two-stage task results: how changes in task structure affect what model-free and model-based strategies predict about the effects of reward and transition on the stay probability

Feher da Silva, C.; Hare, T. A.

10.1101/187856 — neuroscience — Posted on 2017-12-01

1516 Subjective inflation of color saturation in the periphery under temporal overload

Rajananda, S.; A.K. Peters, M.; Lau, H.; Odegaard, B.

10.1101/227074 — neuroscience — Posted on 2017-12-01

1517 Learning a neural response metric for retinal prosthesis

Shah, N. P.; Madugula, S.; Chichilnisky, E. J.; Shlens, J.; Singer, Y.

10.1101/226530 — neuroscience — Posted on 2017-12-01

1518 Tracking the dynamic functional connectivity structure of the human brain across the adult lifespan

Xia, Y.; Chen, Q.; Li, M.; Gong, W.; Qiu, J.

10.1101/226043 — neuroscience — Posted on 2017-12-01

1519 Annihilation of Methicillin-resistant Staphylococcus aureus via Photobleaching of Staphyloxanthin

Dong, P.-T.; Mohammad, H.; Wang, X.; Hui, J.; Li, J.; Liang, L.; Seleem, M. N.; Cheng, J.-X.

10.1101/227603 — microbiology — Posted on 2017-12-01

1520 Collateral sensitivity to β-lactam drugs in drug-resistant tuberculosis is driven by the transcriptional wiring of BlaI operon genes

Trigos, A. S.; Goudey, B.; Bedo, J.; Conway, T.; Faux, N. G.; Wyres, K.

10.1101/227538 — microbiology — Posted on 2017-12-01

1521 Smc5/6-antagonism by HBx is an evolutionary-conserved function of hepatitis B virus infection in mammals

Filleton, F.; Abdul, F.; Gerossier, L.; Paturel, A.; Hall, J.; Strubin, M.; Etienne, L.

10.1101/202671 — microbiology — Posted on 2017-12-01

1522 Cytomegalovirus infection is a risk factor for TB disease in Infants

Muller, J.; Matsumiya, M.; Snowden, M. A.; Landry, B.; Satti, I.; Harris, S. A.; Tanner, R.; O'Shea, M. K.; Stockdale, L.; Marsay, L.; Chomka, A.; Harrington-Kandt, R.; Manjaly Thomas, Z.-R.; Naranbhai, V.; Stylianou, E.; Kimbung Mbandi, S.; Hatherill, M.; Hussey, G.; Mahomed, H.; Tameris, M.; McClain, J. B.; Evans, T. G.; Hanekom, W. A.; Scriba, T. J.; McShane, H.; Fletcher, H. A.

10.1101/222646 — immunology — Posted on 2017-12-01

1523 Gene expression effects of lithium and valproic acid in a serotonergic cell line

Balasubramanian, D.; Pearson, J. F.; Kennedy, M. A.

10.1101/227652 — genomics — Posted on 2017-12-01

1524 A Bayesian approach to mediation analysis predicts 206 causal target genes in Alzheimer’s disease

Park, Y.; Sarkar, A.; He, L.; Davila-Velderrain, J.; De Jager, P. L.; Kellis, M.

10.1101/219428 — genetics — Posted on 2017-12-01

1525 Gene Expression Distribution Deconvolution in Single Cell RNA Sequencing

Wang, J.; Huang, M.; Torre, E.; Dueck, H.; Shaffer, S.; Murray, J.; Raj, A.; Li, M.; Zhang, N. R.

10.1101/227033 — genetics — Posted on 2017-12-01

1526 Model-based detection and analysis of introgressed Neanderthal ancestry in modern humans

Steinrücken, M.; Spence, J. P.; Kamm, J. A.; Wieczorek, E.; Song, Y. S.

10.1101/227660 — evolutionary biology — Posted on 2017-12-01

1527 An epitope of limited variability as a novel influenza vaccine target

Thompson, C. P.; Lourenco, J.; Walters, A. A.; Obolski, U.; Edmans, M.; Palmer, D. S.; Kooblall, K.; Carnell, G. W.; O Connor, D.; Bowden, T. A.; Pybus, O. G.; Pollard, A. J.; Temperton, N. J.; Lambe, T.; Gilbert, S. C.; Gupta, S.

10.1101/212845 — epidemiology — Posted on 2017-12-01

1528 Genome-based transmission modeling separates imported tuberculosis from recent transmission within an immigrant population

Ayabina, D.; Ronning, J. O.; Alfsnes, K.; Debech, N.; Brynildsrud, O. B.; Arnesen, T.; Norheim, G.; Mengshoel, A.-T.; Rykkvin, R.; Dahle, U. R.; Colijn, C.; Eldholm, V.

10.1101/226662 — epidemiology — Posted on 2017-12-01

1529 Carry-over effects of larval microclimate on the transmission potential of a mosquito-borne pathogen

Evans, M. V.; Shiau, J. C.; Solano, N.; Brindley, M. A.; Drake, J. M.; Murdock, C. C.

10.1101/211037 — ecology — Posted on 2017-12-01

1530 apterous A Specifies Dorsal Wing Patterns And Sexual Traits In Butterflies

Prakash, A.; Monteiro, A.

10.1101/131011 — developmental biology — Posted on 2017-12-01

1531 Aberrant splicing in B-cell acute lymphoblastic leukemia

Black, K. L.; Naqvi, A. S.; Hayer, K. E.; Yang, S. Y.; Gillespie, E.; Bagashev, A.; Pillai, V.; Tasian, S.; Gazzara, M. R.; Carroll, M.; Taylor, D.; Lynch, K. W.; Barash, Y.; Thomas-Tikhonenko, A.

10.1101/225136 — cancer biology — Posted on 2017-12-01

1532 Tumorcode - A framework to simulate vascularized tumors

Fredrich, T.; Welter, M.; Rieger, H.

10.1101/216903 — biophysics — Posted on 2017-12-01

1533 Prospects for recurrent neural network models to learn RNA biophysics from high-throughput data

Wu, M. J.; Andreasson, J. O.; Kladwang, W.; Greenleaf, W. J.; Eterna players, ; Das, R.

10.1101/227611 — biophysics — Posted on 2017-12-01

1534 A Parallel Multiobjective Metaheuristic for Multiple Sequence Alignment

Rubio-Largo, A.; Vanneschi, L.; Castelli, M.; Vega-Rodriguez, M. A.

10.1101/103101 — bioinformatics — Posted on 2017-12-01

1535 Relative evolutionary rate inference in HyPhy with LEISR

Spielman, S. J.; Pond, S. L. K.

10.1101/206011 — bioinformatics — Posted on 2017-12-01

1536 A linear-time algorithm to sample the dual-birth model

Moshiri, N.

10.1101/226423 — bioinformatics — Posted on 2017-12-01

1537 Comparison of the 3D-IR-BTFE method and the conventional method in the head MRI contrast

Hirahara, D.

10.1101/211763 — bioengineering — Posted on 2017-12-01

1538 Identification and characterization of functional modules reflecting transcriptome transition during human neuron maturation

He, Z.; Yu, Q.

10.1101/174748 — bioinformatics — Posted on 2017-12-01

1539 Predicting CTCF-mediated chromatin interactions by integrating genomic and epigenomic features

Kai, Y.; Andricovich, J.; Zeng, Z.; Zhu, J.; Tzatsos, A.; Peng, W.

10.1101/215871 — systems biology — Posted on 2017-12-01

1540 An experimental and computational framework to build a dynamic protein atlas of human cell division

Cai, Y.; Hossain, M. J.; Heriche, J.-K.; Politi, A. Z.; Walther, N.; Koch, B.; Wachsmuth, M.; Nijmeijer, B.; Kueblbeck, M.; Martinic, M.; Ladurner, R.; Peters, J.-M.; Ellenberg, J.

10.1101/227751 — systems biology — Posted on 2017-12-01

1541 Growth inhibition by amino acids in Saccharomyces cerevisiae

Ruiz, S. J.; van 't Klooster, J. S.; Bianchi, F.; Poolman, B.

10.1101/222224 — cell biology — Posted on 2017-12-01

1542 Single Molecule Pull-down for Quantification of Membrane Receptor Multisite Phosphorylation

Salazar-Cavazos, E.; Lidke, K. A.; Lidke, D. S.

10.1101/227512 — cell biology — Posted on 2017-12-01

1543 Diverse functions of closely homologous actin isoforms are defined by their nucleotide, rather than their amino acid sequence.

Vedula, P.; Kurosaka, S.; Leu, N.; Wolf, Y.; Shabalina, S.; Wang, J.; Sterling, S.; Dong, D.; Kashina, A.

10.1101/227546 — cell biology — Posted on 2017-12-01

1544 Intraflagellar transport proteins undergo nonaxonemal staged hindrance between the recruiting distal appendages and the cilium

Yang, T.; Tran, M. N. T.; Chong, W. M.; Huang, C.-E.; Liao, J.-C.

10.1101/227587 — biophysics — Posted on 2017-12-01

1545 Prospects for recurrent neural network models to learn RNA biophysics from high-throughput data

Wu, M. J.; Andreasson, J. O.; Kladwang, W.; Greenleaf, W. J.; Eterna players, ; Das, R.

10.1101/227611 — biophysics — Posted on 2017-12-01

Archive, 2017-12