bioRxiv directory

Guzzo, M.; Murray, S. M.; Martineau, E.; Lhospice, S.; Baronian, G.; My, L.; Zhang, Y.; Espinosa, L.; Vincentelli, R.; Bratton, B. P.; Shaevitz, J. W.; Molle, V.; Howard, M.; Mignot, T.

10.1101/137695 — microbiology — Posted on 2017-06-30

14 Transient telomerase inhibition alters cell cycle kinetics

Thompson, C. A. H.; Gu, A. Y. M.; Yang, S. Y.; Mathew, V.; Fleisig, H.; Wong, J. M. Y.

10.1101/158287 — cancer biology — Posted on 2017-06-30

15 Kinome rewiring reveals AURKA is a molecular barrier to the efficacy of PI3K/mTOR-pathway inhibitors in breast cancer

Donnella, H. J.; Webber, J. T.; Levin, R. S.; Camarda, R.; Momcilovic, O.; Bayani, N.; Shah, K. N.; Korkola, J.; Shokat, K. M.; Goga, A.; Gordan, J.; Bandyopadhyay, S.

10.1101/158295 — cancer biology — Posted on 2017-06-30

16 Colorectal cancer susceptibility loci as predictive markers of rectal cancer prognosis after surgery

Hu, Y.; Gaedcke, J.; Emons, G.; Beissbarth, T.; Grade, M.; Jo, P.; Yeager, M.; Chanock, S.; Wolff, H.; Camps, J.; Ghadimi, M. B.; Ried, T.

10.1101/158238 — cancer biology — Posted on 2017-06-30

17 Robust estimation of Hi-C contact matrices by fused lasso reveals preferential insulation of super-enhancers by strong TAD boundaries and a synergistic role in cancer

Gong, Y.; Lazaris, C.; Lozano, A.; Kambadur, P.; Ntziachristos, P.; Aifantis, I.; Tsirigos, A.

10.1101/141481 — bioinformatics — Posted on 2017-06-30

18 Superior Colliculus Neuronal Ensemble Activity Signals Optimal Rather Than Subjective Confidence

Odegaard, B.; Grimaldi, P.; Cho, S. H.; Peters, M. A. K.; Lau, H.; Basso, M. A.

10.1101/157123 — neuroscience — Posted on 2017-06-30

19 HyperTRIBE identifies many in vivo targets of a RNA-binding protein

Xu, W.; Rahman, R.; Rosbash, M.

10.1101/156828 — molecular biology — Posted on 2017-06-30

20 Germline De Novo Mutation Clusters Arise During Oocyte Aging In Genomic Regions With Increased Double-Strand Break Incidence

Goldmann, J. M.; Seplyarskiy, V. B.; Wong, W. S. W.; Vilboux, T.; Bodian, D. L.; Solomon, B. D.; Veltman, J. A.; Deeken, J. F.; Gilissen, C.; Niederhuber, J. E.

10.1101/140111 — genomics — Posted on 2017-06-30

21 Comprehensive Pathway Analyses Of Schizophrenia Risk Loci Point To Dysfunctional Postsynaptic Signaling

Schijven, D.; Kofink, D.; Tragante, V.; Verkerke, M.; Pulit, S. L.; Kahn, R. S.; Veldink, J. H.; Vinkers, C. H.; Boks, M. P.; Luykx, J. J.

10.1101/117481 — genetics — Posted on 2017-06-30

22 Cryptography for genetic material

Sawaya, S.

10.1101/157685 — genetics — Posted on 2017-06-30

23 Bayesian and likelihood phylogenetic reconstructions of morphological traits are not discordant when taking uncertainty into consideration. A comment on Puttick et al.

Brown, J. W.; Parins-Fukuchi, C.; Stull, G. W.; Vargas, O. M.; Smith, S. A.

10.1101/114793 — evolutionary biology — Posted on 2017-06-30

24 ukbtools: An R package to manage and query UK Biobank data

Hanscombe, K. B.; Coleman, J. R. I.; Traylor, M.; Lewis, C. M.

10.1101/158113 — epidemiology — Posted on 2017-06-30

25 Despite reproductive interference, the net outcome of reproductive interactions among spider mite species is not necessarily costly

Clemente, S. H.; Santos, I.; Ponce, A. R.; Rodrigues, L. R.; Varela, S. A. M.; Magalhaes, S.

10.1101/113274 — ecology — Posted on 2017-06-30

26 Deletion Of EP4 In S100a4-Lineage Cells Reduces Scar Tissue Formation During Early But Not Later Stages Of Tendon Healing

Ackerman, J. E.; Best, K. T.; O'Keefe, R. J.; Loiselle, A.

10.1101/132860 — cell biology — Posted on 2017-06-30

27 Focal cortical seizures start as standing waves and propagate respecting homotopic connectivity

Rossi, L. F.; Wykes, R. C.; Kullmann, D.; Carandini, M.

10.1101/080598 — neuroscience — Posted on 2017-06-30

28 Combining Ensemble Learning Techniques and G-Computation to Investigate Chemical Mixtures in Environmental Epidemiology Studies

Oulhote, Y.; Bind, M.-A.; Coull, B.; Patel, C. J.; Grandjean, P.

10.1101/147413 — epidemiology — Posted on 2017-06-30

29 Methods for the Refolding of Disulfide-Rich Proteins.

Haggarty-Weir, C. N.; Galloway, R.; Godfrey, W.

10.1101/158162 — biochemistry — Posted on 2017-06-30

30 Risk of vascular events or death in different manifestations of cerebral small vessel disease: a 2-year follow-up study with a control group

Staszewski, J.; Piusinska-Macoch, R.; Brodacki, B.; Skrobowska, E.; Macek, K.; Stepien, A.

10.1101/151498 — neuroscience — Posted on 2017-06-30

31 Decreased intra-lymphocyte cytokines measurement in septic shock patients: a proof of concept study in whole blood

Letessier, W.; Demaret, J.; Gossez, M.; Allam, C.; Venet, F.; Rimmele, T.; Monneret, G.

10.1101/158089 — immunology — Posted on 2017-06-30

32 CD18-mediated adhesion is required for lung inflammation induced by mononuclear cell-derived extracellular vesicles

Neri, T.; Scalise, V.; Passalacqua, I.; Giusti, I.; Balia, C.; D'Alessandro, D.; Berrettini, S.; Pedrinelli, R.; Paggiaro, P.; Dolo, V.; Celi, A.

10.1101/158121 — immunology — Posted on 2017-06-30

33 Immuno-Detection by sequencing (ID-seq) enables large-scale high-dimensional phenotyping in cells.

van Buggenum, J. A.; Gerlach, J. P.; Tanis, S. E. J.; Hogeweg, M.; Jansen, P. W. T. C.; Middelwijk, J.; van der Steen, R.; Vermeulen, M.; Albers, C. A.; Mulder, K. W.

10.1101/158139 — genomics — Posted on 2017-06-30

34 Exact calculation of the joint allele frequency spectrum for isolation with migration models

Kern, A. D.; Hey, J.

10.1101/065003 — evolutionary biology — Posted on 2017-06-30

35 A systematic survey of regional multitaxon biodiversity: evaluating strategies and coverage

Brunbjerg, A. K.; Bruun, H. H.; Broendum, L.; Classen, A. T.; Fog, K.; Froeslev, T. G.; Goldberg, I.; Hansen, M. D. D.; Hoeye, T. T.; Laessoee, T.; Newman, G.; Skipper, L.; Soechting, U.; Ejrnaes, R.

10.1101/158030 — ecology — Posted on 2017-06-30

36 Neutral tumor evolution?

Tarabichi, M.; Martincorena, I.; Gerstung, M.; Markowetz, F.; Spellman, P. T.; Morris, Q. D.; Lingjaerde, O. C.; Wedge, D. C.; Van Loo, P.; - PCAWG Evolution and Heterogeneity Working Group,

10.1101/158006 — cancer biology — Posted on 2017-06-30

37 zingeR: unlocking RNA-seq tools for zero-inflation and single cell applications

Van den Berge, K.; Soneson, C.; Love, M. I.; Robinson, M. D.; Clement, L.

10.1101/157982 — bioinformatics — Posted on 2017-06-30

38 Mass spectrometry based qualification ofantibodies for plasma proteomics.

Fredolini, C.; Bystrom, S.; Sanchez-Rivera, L.; Ioannou, M.; Tamburro, D.; Branca, R. M.; Lehtio, J.; Nilsson, P.; Schwenk, J. M.

10.1101/158022 — biochemistry — Posted on 2017-06-30

39 Impact of different intensities of intermittent theta burst stimulation on the cortical properties during TMS-EEG and working memory performance

Chung, S. W.; Rogash, N. C.; Hoy, K. E.; Sullivan, C. M.; Cash, R. F. H.; Ftizgerald, P. B.

10.1101/157917 — neuroscience — Posted on 2017-06-30

40 Sleep deprivation negatively impacts reproductive output in Drosophila melanogaster

Potdar, S.; Daniel, D. K.; Thomas, F. A.; Lall, S.; Sheeba, V.

10.1101/158071 — neuroscience — Posted on 2017-06-30

41 From curiosity relief to epistemic surprise: complementary roles of the prefrontal cortex and the ventral striatum in the neural valuation of knowledge

Ligneul, R.; Mermillod, M.; Morisseau, T.

10.1101/157644 — neuroscience — Posted on 2017-06-30

42 On the Origins of the Cerebral IVIM Signal

Hare, H. V.; Frost, R.; Meakin, J. A.; Bulte, D. P.

10.1101/158014 — neuroscience — Posted on 2017-06-30

43 Compressive Temporal Summation in Human Visual Cortex

Zhou, J.; Benson, N. C.; Kay, K.; Winawer, J.

10.1101/157628 — neuroscience — Posted on 2017-06-30

44 The Latent Semantic Space and Corresponding Brain Regions of the Functional Neuroimaging Literature via NeuroSynth

Alhazmi, F.; Beaton, D.; Abdi, H.

10.1101/157826 — neuroscience — Posted on 2017-06-30

45 Burst Ensemble Multiplexing: A Neural Code Connecting Dendritic Spikes with Microcircuits

Naud, R.; Sprekeler, H.

10.1101/143636 — neuroscience — Posted on 2017-06-30

46 Integration of plasticity mechanisms within a single sensory neuron of C. elegans actuates a memory

Hawk, J. D.; Calvo, A. C.; Almoril-Porras, A.; Aljobeh, A.; Torruella-Suarez, M. L.; Ren, I.; Cook, N.; Greenwood, J.; Luo, L.; Samuel, A. D. T.; Colon-Ramos, D.

10.1101/157958 — neuroscience — Posted on 2017-06-30

47 Analysis of behaviour in the Active Allothetic Place Avoidance task based on cluster analysis of the rat movement motifs

Gehring, T. V.; Wesierska, M. J.; Wojcik, D. K.; Vasilaki, E.

10.1101/157859 — neuroscience — Posted on 2017-06-30

48 Dissection of purified LINE-1 reveals distinct nuclear and cytoplasmic intermediates

Molloy, K. R.; Taylor, M. S.; Altukhov, I.; Mita, P.; Jiang, H.; Adney, E. M.; Wudzinska, A.; Ischenko, D.; Burns, K. H.; Fenyo, D.; Chait, B. T.; Alexeev, D.; Rout, M. P.; Boeke, J.; LaCava, J.

10.1101/157818 — molecular biology — Posted on 2017-06-30

49 Widely used commercial ELISA for human Zonulin reacts with Complement C3 rather than pre-Haptoglobin 2

Scheffler, L.; Crane, A.; Heyne, H. O.; Toenjes, A.; Schleinitz, D.; Ihling, C. H.; Stumvoll, M.; Kovacs, P.; Heiker, J. T.

10.1101/157578 — molecular biology — Posted on 2017-06-30

50 Obstruction of pilus retraction stimulates bacterial surface sensing

Ellison, C. K.; Kan, J.; Dillard, R. S.; Kysela, D. T.; Hampton, C. M.; Ke, Z.; Wright, E. R.; Biais, N.; Dalia, A. B.; Brun, Y. V.

10.1101/157727 — microbiology — Posted on 2017-06-30

51 Two phosphoglucomutase paralogs regulate triggered secretion of the Toxoplasma micronemes

Saha, S.; Coleman, B. I.; Sansom, T.; Dubey, R.; Blader, I. J.; Gubbels, M.-J.

10.1101/157743 — microbiology — Posted on 2017-06-30

52 TECPR2 a positive regulator of autophagy is implicated in healthy brain ageing

Alexander, J.; Stroebel, T.; Georgitsi, M.; Schuster, M.; Penz, T.; Bock, C.; Honigschnabl, S.; Reiner, A.; Fischer, P.; Paschou, P.; Kovacs, G.

10.1101/157693 — genomics — Posted on 2017-06-30

53 Analysis of the Aedes albopictus C6/36 genome provides insight into cell line adaptations to in vitro viral propagation

Miller, J. R.; Koren, S.; Dilley, K. A.; Puri, V.; Brown, D. M.; Harkins, D. M.; Thibaud-Nissen, F.; Rosen, B.; Chen, X.-G.; Tu, Z.; Sharakhov, I. V.; Sharakhova, M. V.; Sebra, R.; Stockwell, T. B.; Bergman, N. H.; Sutton, G. G.; Phillippy, A. M.; Piermarini, P. M.; Shabman, R. S.

10.1101/157081 — genomics — Posted on 2017-06-30

54 Genomic footprints of activated telomere maintenance mechanisms in cancer

Sieverling, L.; Hong, C.; Koser, S. D.; Ginsbach, P.; Kleinheinz, K.; Hutter, B.; Braun, D. M.; Cortes-Ciriano, I.; Xi, R.; Kabbe, R.; Park, P. J.; Eils, R.; Schlesner, M.; Rippe, K.; Jones, D. T. W.; Brors, B.; Feuerbach, L.

10.1101/157560 — genomics — Posted on 2017-06-30

55 Questioning unexpected CRISPR off-target mutations in vivo

Kim, S.-T.; Park, J.; Kim, D.; Kim, K.; Bae, S.; Schlesner, M.; Kim, J.-S.

10.1101/157925 — genomics — Posted on 2017-06-30

56 Widespread pleiotropy confounds causal relationships between complex traits and diseases inferred from Mendelian randomization

Verbanck, M.; Chen, C.-Y.; Neale, B.; Do, R.

10.1101/157552 — genomics — Posted on 2017-06-30

57 Parent-progeny imputation from pooled samples forcost-efficient genotyping in plant breeding

Technow, F.; Gerke, J.

10.1101/157883 — genetics — Posted on 2017-06-30

58 GWAS of epigenetic ageing rates in blood reveals a critical role for TERT

Lu, A. T.; Xue, L.; Salfati, E. L.; Chen, B. H.; Ferrucci, L.; Levy, D.; Joehanes, R.; Murabito, J. M.; Kiel, D. P.; Tsai, P.-C.; Yet, I.; Bell, J. T.; Mangino, M.; Tanaka, T.; McRae, A.; Marioni, R. E.; Visscher, P. M.; Wray, N. R.; Deary, I. J.; Levine, M. E.; Quach, A.; Assimes, T. L.; Tsao, P. S.; Absher, D.; Stewart, J. D.; Li, Y.; Reiner, A. P.; Hou, L.; Baccarelli, A. A.; Whitsel, E. A.; Aviv, A.; Cardona, A.; Day, F. R.; Perry, J. R. B.; Ong, K. K.; Raj, K.; Lunetta, K. L.; Horvath, S.

10.1101/157776 — genetics — Posted on 2017-06-30

59 Cryptography for genetic material

Sawaya, S.

10.1101/157685 — genetics — Posted on 2017-06-30

60 PHYLOSCANNER: Analysing Within- and Between-Host Pathogen Genetic Diversity to Identify Transmission, Multiple Infection, Recombination and Contamination

Wymant, C.; Hall, M.; Ratmann, O.; Bonsall, D.; Golubchik, T.; de Cesare, M.; Gall, A.; Cornelissen, M.; Fraser, C.; - STOP-HCV Consortium, ; - The Maela Pneumococcal Collaboration, ; - The BEEHIVE Collaboration,

10.1101/157768 — evolutionary biology — Posted on 2017-06-30

61 Selfing species exhibit diminished niche breadth over time.

Park, D. S.; Ellison, A. M.; Davis, C. C.

10.1101/157974 — ecology — Posted on 2017-06-30

62 Synthesizing developmental trajectories

Villoutreix, P.; Anden, J.; Lim, B.; Lu, H.; Kevrekidis, I. G.; Singer, A.; Shvartsman, S. Y.

10.1101/157834 — developmental biology — Posted on 2017-06-30

63 Morphometrics of complex cell shapes: Lobe Contribution Elliptic Fourier Analysis (LOCO-EFA)

Sanchez-Corrales, Y. E.; Hartley, M.; van Rooij, J.; Maree, S. F. M.; Grieneisen, V.

10.1101/157842 — developmental biology — Posted on 2017-06-30

64 The tumor suppressor APC is an attenuator of spindle-pulling forces during C. elegans asymmetric cell division

Sugioka, K.; Fielmich, L.-E.; Mizumoto, K.; Bowerman, B.; van den Heuvel, S.; Kimura, A.; Sawa, H.

10.1101/157404 — cell biology — Posted on 2017-06-30

65 LINE-1 and the cell cycle: protein localization and functional dynamics

Mita, P.; Wudzinska, A.; Sun, X.; Andrade, J.; Nayak, S.; Kahler, D.; Badri, S.; LaCava, J.; Ueberheide, B.; Yun, C.; Fenyo, D.; Boeke, J.

10.1101/147587 — cell biology — Posted on 2017-06-30

66 SHP2 Is Required for BCR-ABL1-Induced Hematologic Neoplasms

Gu, S.; Sayad, A.; Chan, G.; Yang, W.; Lu, Z.; Virtanen, C.; Van Etten, R. A.; Neel, B. G.

10.1101/157966 — cancer biology — Posted on 2017-06-30

67 A benchmarking of workflows for detecting differential splicing and differential expression at isoform level in human RNA-seq studies

Merino, G. A.; Conesa, A.; Fernandez, E. A.

10.1101/156752 — bioinformatics — Posted on 2017-06-30

68 The Influence of Aging and Mechanical Stretch in Alveolar Epithelium ER Stress and Inflammation

Valentine, M. S.; Herbert, J. A.; Link, P. A.; Kamga Gninzeko, F. J.; Schneck, M. B.; Shankar, K.; Nkwocha, J.; Reynolds, A. M.; Heise, R. L.

10.1101/157677 — bioengineering — Posted on 2017-06-30

69 Sensor location optimization and joint angle prediction in hand postures

Bhatt, N.; SKM, V.

10.1101/157784 — bioengineering — Posted on 2017-06-30

70 Computational Investigation of O2 Diffusion Through an Intra-molecular Tunnel in AlkB; Influence of Polarization on O2 Transport

Torabifard, H.; Cisneros, G. A.

10.1101/154674 — biochemistry — Posted on 2017-06-30

71 Semantic Networks Generated from Early Linguistic Input

Amatuni, A.; Bergelson, E.

10.1101/157701 — animal behavior and cognition — Posted on 2017-06-30

72 Taking off the training wheels: Measuring auditory P3 during outdoor cycling using an active wet EEG system

Scanlon, J. E. M.; Townsend, K. A.; Cormier, D. L.; Kuziek, J. W. P.; Mathewson, K.

10.1101/157941 — neuroscience — Posted on 2017-06-30

Roda, F.; Hopkins, R.

10.1101/155986 — plant biology — Posted on 2017-06-30

74 Physiological factors of importance for load carriage

Godhe, M.; Helge, T.; Mattsson, C. M.; Ekblom, O.; Ekblom, B.

10.1101/157891 — physiology — Posted on 2017-06-30

Broce, I. J.; Karch, C. M.; Wen, N.; Fan, C. C.; Wang, Y.; Hong Tan, C.; Kouri, N.; Ross, O. A.; Höglinger, G. U.; Muller, U.; Hardy, J.; - International FTD-Genomics Consortium (IFGC), ; Momeni, P.; Hess, C. P.; Dillon, W. P.; Miller, Z. A.; Bonham, L. W.; Rabinovici, G. D.; Rosen, H. J.; Schellenberg, G. D.; Franke, A.; Karlsen, T. H.; Veldink, J. H.; Ferrari, R.; Yokoyama, J. S.; Miller, B. L.; Andreassen, O. A.; Dale, A. M.; Desikan, R. S.; Sugrue, L. P.

10.1101/157875 — genetics — Posted on 2017-06-30

76 Cell type-specific expression profiling sheds light on the development of a peculiar neuron, housing a complex organelle

Sunagar, K.; Columbus-Shenkar, Y.; Fridrich, A.; Gutkovitch, N.; Aharoni, R.; Moran, Y.

10.1101/158063 — evolutionary biology — Posted on 2017-06-30

77 Patchwork of contrasting medication cultures across the USA

Melamed, R. D.; Rzhetsky, A.

10.1101/156281 — bioinformatics — Posted on 2017-06-30

78 Evolution of an enzyme from a solute-binding protein

Clifton, B. E.; Kaczmarski, J. A.; Carr, P. D.; Gerth, M. L.; Tokuriki, N.; Jackson, C. J.

10.1101/157495 — biochemistry — Posted on 2017-06-30

79 Highly efficient site-specific mutagenesis in Malaria mosquitoes using CRISPR

Li, M.; Akbari, O.; White, B.

10.1101/157867 — genetics — Posted on 2017-06-30

80 Jellyfish Oocyte Maturation Inducing Hormone And Neuroendocrine Regulation Of Reproduction

Takeda, N.; Kon, Y.; Quiroga Artigas, G.; Lapebie, P.; Barreau, C.; Koizumi, O.; Kishimoto, T.; Tachibana, K.; Houliston, E.; Deguchi, R.

10.1101/140160 — developmental biology — Posted on 2017-06-29

81 Comprehensive genome and transcriptome analysis reveals genetic basis for gene fusions in cancer

Fonseca, N. A.; He, Y.; Greger, L.; - PCAWG-3, ; Brazma, A.; Zhang, Z.

10.1101/148684 — genetics — Posted on 2017-06-29

82 Tracking Subclonal Mutation Frequencies Throughout Lymphomagenesis Identifies Cancer Drivers in Mouse Models of Lymphoma.

Webster, P.; Dawes, J. C.; Dewchand, H.; Takacs, K.; Iadarola, B.; Bolt, B. J.; Caceres, J. J.; Kaczor, J.; Game, L.; Adejumo, T.; Elliott, J.; Naresh, K.; Tan, G.; Dharmalingam, G.; Paccanaro, A.; Uren, A.

10.1101/157800 — cancer biology — Posted on 2017-06-29

83 Birds have swing: Multifractal analysis reveals expressive rhythm in birdsong.

Roeske, T. C.; Kelty-Stephen, D.; Wallot, S.

10.1101/157594 — animal behavior and cognition — Posted on 2017-06-29

84 Designing Anti-Zika Virus Peptides Derived from Predicted Human-Zika Virus Protein-Protein Interactions

Kazmirchuk, T.; Dick, K.; Burnside, D. J.; Barnes, B.; Moteshareie, H.; Hajikarimlou, M.; Omidi, K.; Ahmed, D.; Low, A.; Lettl, C.; Hooshyar, M.; Schoenrock, A.; Pitre, S.; Babu, M.; Cassol, E.; Samanfar, B.; Wong, A.; Dehne, F.; Green, J. R.; Golshani, A.

10.1101/156695 — synthetic biology — Posted on 2017-06-29

85 Should A Few Null Findings Falsify Prefrontal Theories Of Conscious Perception?

Odegaard, B.; Knight, R. T.; Lau, H.

10.1101/122267 — neuroscience — Posted on 2017-06-29

86 Identification of Rab18 as an Essential Host Factor for BKPyV Infection Using a Whole Genome RNA Interference Screen

Zhao, L.; Imperiale, M.

10.1101/157602 — microbiology — Posted on 2017-06-29

87 c-di-GMP-linked phenotypes are modulated by the interaction between a diguanylate cyclase and a polar hub protein

Nicastro, G. G.; Kaihami, G. H.; Pulschen, A. A.; Hernandez-Montelongo, J.; Boechat, A. L.; de Oliveira Pereira, T.; Stefanello, E.; Colepicolo, P.; Bordi, C.; Baldini, R.

10.1101/154005 — microbiology — Posted on 2017-06-29

88 Genetic risk for schizophrenia influences substance use in emerging adulthood: an event-level polygenic prediction model

Mallard, T. T.; Harden, K. P.; Fromme, K.

10.1101/157636 — genetics — Posted on 2017-06-29

89 Machine learning analysis identifies Drosophila Grunge/Atrophin as an important learning and memory gene required for memory retention and social learning.

Kacsoh, B. Z.; Greene, C.; Bosco, G.

10.1101/157610 — genetics — Posted on 2017-06-29

90 New genes and functional innovation in mammals

Villanueva-Canas, J. L.; Ruiz-Orera, J.; Agea, M. I.; Gallo, M.; Andreu, D.; Alba, M. M.

10.1101/090860 — evolutionary biology — Posted on 2017-06-29

91 Pivot-and-bond model explains microtubule bundle formation

Prelogovic, M.; Winters, L.; Milas, A.; Tolic, I.; Pavin, N.

10.1101/157719 — biophysics — Posted on 2017-06-29

92 GIGGLE: a search engine for large-scale integrated genome analysis

Layer, R. M.; Pedersen, B. S.; DiSera, T.; Marth, G. T.; Gertz, J.; Quinlan, A. R.

10.1101/157735 — bioinformatics — Posted on 2017-06-29

93 Nanopore-based single molecule sequencing of the D4Z4 array responsible for facioscapulohumeral muscular dystrophy

Mitsuhashi, S.; Nakagawa, S.; Ueda, M. T.; Imanishi, T.; Mitsuhashi, H.

10.1101/157040 — bioinformatics — Posted on 2017-06-29

94 High-NA open-top selective-plane illumination microscopy for biological imaging

McGorty, R.; Xie, D.; Huang, B.

10.1101/140418 — bioengineering — Posted on 2017-06-29

95 Cost-effective, high-throughput, single-haplotype iterative mapping and sequencing for complex genomic structures

Bellott, D. W.; Cho, T.-J.; Hughes, J. F.; Skaletsky, H.; Page, D. C.

10.1101/157206 — genomics — Posted on 2017-06-29

96 Machine learning analysis identifies Drosophila Grunge/Atrophin as an important learning and memory gene required for memory retention and social learning.

Kacsoh, B. Z.; Greene, C.; Bosco, G.

10.1101/157610 — genetics — Posted on 2017-06-29

97 Assay to visualize specific protein oxidation reveals spatio-temporal regulation of SHP2

Tsutsumi, R.; Harizanova, J.; Stockert, R.; Schröder, K.; Bastiaens, P. I. H.; Neel, B. G.

10.1101/157750 — cell biology — Posted on 2017-06-29

98 Drosophila Mutants that Are Motile but Respond Poorly to All Stimuli Tested

Vang, L. L.; Adler, J.

10.1101/066423 — animal behavior and cognition — Posted on 2017-06-29

99 Machine learning analysis identifies Drosophila Grunge/Atrophin as an important learning and memory gene required for memory retention and social learning.

Kacsoh, B. Z.; Greene, C.; Bosco, G.

10.1101/157610 — genetics — Posted on 2017-06-29

100 Unique genomic features and deeply-conserved functions of long non-coding RNAs in the Cancer LncRNA Census (CLC)

Carlevaro-Fita, J.; Lanzos, A.; Feuerbach, L.; Hong, C.; Mas-Ponte, D.; - PCAWG Driver Identification Working Group 2-5-9-14, ; Guigo, R.; Pedersen, J. S.; Johnson, R.

10.1101/152769 — genomics — Posted on 2017-06-29

101 Artemisinin mimics nitric oxide to reduce adipose weight by targeting mitochondrial complexes

Gao, Q.; He, J.; Liao, T.; Chen, Y.-P.; Tan, L.-L.; Zhang, J.-D.; Li, C.-Q.; Zeng, Q.; Wang, Q.; Huang, S.-Q.; Huang, X.-A.; Xu, Q.; Zeng, Q.-P.

10.1101/157396 — pharmacology and toxicology — Posted on 2017-06-29

102 Obesity/Type II Diabetes Alters Macrophage Polarization Resulting in a Fibrotic Tendon Healing Response

Ackerman, J. E.; Geary, M. B.; Orner, C. A.; Bawany, F.; Loiselle, A.

10.1101/131607 — pathology — Posted on 2017-06-29

103 Untuned But Not Irrelevant: A Role For Untuned Neurons In Sensory Information Coding

Zylberberg, J.

10.1101/134379 — neuroscience — Posted on 2017-06-29

104 Inducible and reversible phenotypes in a novel mouse model of Friedreich’s Ataxia

Chandran, V.; Gao, K.; Swarup, V.; Versano, R.; Dong, H.; Jordan, M. C.; Geschwind, D. H.

10.1101/137265 — neuroscience — Posted on 2017-06-29

105 Cohort Specific Effects of Cereal-bar Supplementation in Overweight Patients With or Without Type 2 Diabetes Mellitus

Chou, C. J.; Lauber, C.; Chakrabarti, A.; Siddharth, J.; Chalut-Carpentier, A.; Pataky, Z.; Golay, A.; Parkinson, S.

10.1101/066704 — microbiology — Posted on 2017-06-29

106 Clostridium difficile colonizes alternative nutrient niches during infection across distinct murine gut microbiomes

Jenior, M. L.; Leslie, J. L.; Young, V. B.; Schloss, P. D.

10.1101/092304 — microbiology — Posted on 2017-06-29

107 Frequency of mosaicism points towards mutation-prone early cleavage cell divisions.

Harland, C.; Charlier, C.; Karim, L.; Cambisano, N.; Deckers, M.; Mni, M.; Mullaart, E.; Coppieters, W.; Georges, M.

10.1101/079863 — genetics — Posted on 2017-06-29

108 Quantum Theory on Genome Evolution

Luo, L.

10.1101/034710 — evolutionary biology — Posted on 2017-06-29

109 Despite reproductive interference, the net outcome of reproductive interactions among spider mite species is not necessarily costly

Clemente, S. H.; Santos, I.; Ponce, A. R.; Rodrigues, L. R.; Varela, S. A. M.; Magalhaes, S.

10.1101/113274 — ecology — Posted on 2017-06-29

110 GFF3sort: An efficient tool to sort GFF3 files for tabix indexing

Zhu, T.; Liang, C.; Meng, Z.; Guo, S.; Zhang, R.

10.1101/145938 — bioinformatics — Posted on 2017-06-29

111 The white gene controls copulation success in Drosophila melanogaster

Xiao, C.; Qiu, S.; Robertson, R. M.

10.1101/072710 — animal behavior and cognition — Posted on 2017-06-29

112 RetroPath2.0: A retrosynthesis workflow for metabolic engineers

Delepine, B.; Duigou, T.; Carbonell, P.; Faulon, J.-L.

10.1101/141721 — systems biology — Posted on 2017-06-29

113 The eardrum moves when the eyes move: A multisensory effect on the mechanics of hearing

Gruters, K. G.; Murphy, D. L. K.; Smith, D. W.; Shera, C. A.; Groh, J. M.

10.1101/156570 — neuroscience — Posted on 2017-06-29

114 Spatially dispersed synapses yield sharply-tuned place cell responses through dendritic spike initiation

Basak, R.; Narayanan, R.

10.1101/157453 — neuroscience — Posted on 2017-06-29

115 Does human primary motor cortex represent sequences of finger movements?

Yokoi, A.; Arbuckle, S. A.; Diedrichsen, J.

10.1101/157438 — neuroscience — Posted on 2017-06-29

116 Classifiers with limited connectivity

Kushnir, L.; Fusi, S.

10.1101/157289 — neuroscience — Posted on 2017-06-29

117 Proteomic Architecture of Human Coronary and Aortic Atherosclerosis

Herrington, D.; Mao, C.; Parker, S.; Fu, Z.; Yu, G.; Chen, L.; Venkatraman, V.; Fu, Y.; Wang, Y.; Howard, T.; Goo, J.; Zhao, C.; Liu, Y.; Saylor, G.; Athas, G.; Troxclair, D.; Hixson, J.; Vander Heide, R.; Wang, Y.; Van Eyk, J.

10.1101/157248 — molecular biology — Posted on 2017-06-29

118 Gut microbiota in the burying beetle, Nicrophorus vespilloides, provide colonization resistance against larval bacterial pathogens

Wang, Y.; Rozen, D.

10.1101/157511 — microbiology — Posted on 2017-06-29

119 Antidiabetic drugs “gliptin” affect biofilm formation by the cariogenic bacterium Streptococcus mutans through inhibition of the bacterial DPP IV-like enzyme

De, A.; Pompilio, A.; Francis, J.; Sutcliffe, I. C.; Black, G. W.; Lupidi, G.; Petrelli, D.; Vitali, L. A.

10.1101/157503 — microbiology — Posted on 2017-06-29

120 Statistics and simulation of growth of single bacterial cells: illustrations with B. subtilis and E. coli

van Heerden, J. H.; Kempe, H.; Doerr, A.; Maarleveld, T.; Nordholt, N.; Bruggeman, F. J.

10.1101/157545 — microbiology — Posted on 2017-06-29

121 ICM conversion to epiblast by FGF/ERK inhibition is limited in time and requires transcription and protein degradation

Bessonnard, S.; Coqueran, S.; Vandormael-Pournin, S.; Dufour, A.; Artus, J.; Cohen-Tannoudji, M.

10.1101/157537 — developmental biology — Posted on 2017-06-29

122 Differential activation of Fyn kinase distinguishes saturated and unsaturated fats in mouse macrophages

Tarabra, E.; Lee, T.-W. A.; Zammit, V. A.; Vatish, M.; Yamada, E.; Pessin, J. E.; Bastie, C. C.

10.1101/157529 — cell biology — Posted on 2017-06-29

123 Recapitulating bone development for tissue regeneration through engineered mesenchymal condensations and mechanical cues

McDermott, A. M.; Herberg, S.; Mason, D. E.; Pearson, H. B.; Dawahare, J. H.; Collins, J. M.; Grinstaff, M. W.; Kelly, D. J.; Alsberg, E.; Boerckel, J. D.

10.1101/157362 — bioengineering — Posted on 2017-06-29

124 A mannitol/sorbitol receptor stimulates dietary intake in Tribolium castaneum

Takada, T.; Sato, R.; Kikuta, S.

10.1101/157347 — biochemistry — Posted on 2017-06-29

125 Transcriptomic Resilience of a Coral Holobiont to Low pH

Gonzalez-Pech, R. A.; Vargas, S.; Francis, W.; Wörheide, G.

10.1101/157008 — ecology — Posted on 2017-06-29

126 Bat Detective - Deep Learning Tools for Bat Acoustic Signal Detection

Mac Aodha, O.; Gibb, R.; Barlow, K.; Browning, E.; Firman, M.; Freeman, R.; Harder, B.; Kinsey, L.; Mead, G.; Newson, S.; Pandourski, I.; Parsons, S.; Russ, J.; Szodoray-Paradi, A.; Szodoray-Paradi, F.; Tilova, E.; Girolami, M.; Brostow, G.; Jones, K. E.

10.1101/156869 — ecology — Posted on 2017-06-29

127 The role of traction in membrane curvature generation

Alimohamadi, H.; Vasan, R.; Hassinger, J. E.; Stachowiak, J.; Rangamani, P.

10.1101/157313 — biophysics — Posted on 2017-06-29

128 Identification and visualization of differential isoform expression in RNA-seq time series

Nueda, M. J.; Martorell-Marugan, J.; Marti, C.; Tarazona, S.; Conesa, A.

10.1101/155135 — bioinformatics — Posted on 2017-06-29

129 Allosteric Logic of the V. vulnificus Adenine Riboswitch Resolved by Four-dimensional Chemical Mapping

Tian, S.; Kladwang, W.; Das, R.

10.1101/157412 — biochemistry — Posted on 2017-06-29

130 The application of deep convolutional neural networks to ultrasound for modelling of dynamic states within human skeletal muscle

Cunningham, R. J.; Harding, P. J.; Loram, I.

10.1101/157479 — physiology — Posted on 2017-06-29

131 Balancing the Local and the Universal in Maintaining Ethical Access to a Genomics Biobank

Heeney, C.; Kerr, S. M.

10.1101/157024 — genomics — Posted on 2017-06-28

132 To increase trust, change the social design behind aggregated biodiversity data

Franz, N.; Sterner, B.

10.1101/157214 — evolutionary biology — Posted on 2017-06-28

133 FactorNet: a deep learning framework for predicting cell type specific transcription factor binding from nucleotide-resolution sequential data

Quang, D.; Xie, X.

10.1101/151274 — genomics — Posted on 2017-06-28

134 Inferring multi-scale neural mechanisms with brain network modelling

Schirner, M.; McIntosh, A. R.; Jirsa, V.; Deco, G.; Ritter, P.

10.1101/157263 — bioinformatics — Posted on 2017-06-28

135 Ruxolitinib partially reverses functional NK cell deficiency in patients with STAT1 gain-of-function mutations

Vargas Hernandez, A.; Mace, E. M.; Zimmerman, O.; Zerbe, C.; Freeman, A.; Rosenzweig, S.; Leiding, J. W.; Torgerson, T.; Altman, M. C.; Schussler, E.; Cunningham-Rundles, C.; Chinn, I. K.; Hanson, I. C.; Rider, N. L.; Holland, S. M.; Orange, J. S.; Forbes, L. R.

10.1101/157271 — immunology — Posted on 2017-06-28

136 Scalable and efficient single-cell DNA methylation sequencing by combinatorial indexing.

Mulqueen, R. M.; Pokholok, D.; Norberg, S.; Fields, A. J.; Sun, D.; Torkenczy, K. A.; Shendure, J.; Trapnell, C.; O'Roak, B. J.; Xia, Z.; Steemers, F. J.; Adey, A. C.

10.1101/157230 — genomics — Posted on 2017-06-28

137 Quantifying the Risk and Cost of Active Monitoring for Infectious Diseases

Reich, N. G.; Lessler, J.; Varma, J. K.; Vora, N. M.

10.1101/156497 — epidemiology — Posted on 2017-06-28

138 Myocardial injury in critically ill patients with community-acquired pneumonia

Frencken, J. F.; van Baal, L.; Kappen, T. H.; Donker, D. W.; Horn, J.; van der Poll, T.; van Klei, W. A.; Bonten, M. J. M.; Cremer, O. L.

10.1101/155747 — epidemiology — Posted on 2017-06-28

139 Estimating the footprint of pollution on coral reefs using models of species turn-over

Brown, C.; Hamilton, R.

10.1101/157297 — ecology — Posted on 2017-06-28

140 Investigating the role of insulin in increased adiposity: Bi-directional Mendelian randomization study

Richmond, R.; Wade, K.; Corbin, L.; Bowden, J.; Hemani, G.; Timpson, N.; Davey Smith, G.

10.1101/155739 — epidemiology — Posted on 2017-06-28

141 Variation in neuronal activity state, axonal projection target, and position principally define the transcriptional identity of individual neocortical projection neurons.

Chevee, M. A.; Robertson, J. D.; Cannon, G. H.; Brown, S. P.; Goff, L. A.

10.1101/157149 — neuroscience — Posted on 2017-06-28

142 Instantaneous Brain Dynamics Mapped to a Continuous State Space

Billings, J.; Medda, A.; Shakil, S.; Shen, X.; Kashyap, A.; Chen, S.; Abbas, A.; Zhang, X.; Nezafati, M.; Pan, W.-J.; Berman, G.; Keilholz, S.

10.1101/157115 — neuroscience — Posted on 2017-06-28

143 Superior Colliculus Neuronal Ensemble Activity Signals Optimal Rather Than Subjective Confidence

Odegaard, B.; Grimaldi, P.; Cho, S. H.; Peters, M. A. K.; Lau, H.; Basso, M. A.

10.1101/157123 — neuroscience — Posted on 2017-06-28

144 Specific patterns of bold variability associated with the processing of pain stimuli

Costa, T.; Nani, A.; Manuello, J.; Vercelli, U.; Tatu, K.; Cauda, F.

10.1101/157222 — neuroscience — Posted on 2017-06-28

145 A model for sheath formation coupled to motility in Leptothrix ochracea

Vesenka, J.; Havu, J.; Emerson, D.

10.1101/157073 — microbiology — Posted on 2017-06-28

146 A Genome-wide Association and Admixture Mapping Study of Bronchodilator Drug Response in African Americans with Asthma

Spear, M. L.; Hu, D.; Pino-Yanes, M.; Huntsman, S.; Eng, C.; Levin, A. M.; White, M. J.; McGarry, M. E.; Thakur, N.; Galanter, J. M.; Mak, A. C. Y.; Oh, S. S.; Davis, A.; Kumar, R.; Farber, H. J.; Meade, K.; Avila, P. C.; Serebrisky, D.; Lenoir, M. A.; Brigino-Buenaventura, E. A.; Rodriquez Cintron, W.; Thyne, S. M.; Rodriguez-Santana, J. R.; Ford, J. G.; Chapela, R.; Moreno Estrada, A.; Sandoval, K.; Seibold, M. A.; Williams, L. K.; Winkler, C. A.; Torgerson, D. G.; Hernandez, R. D.; Burchard, E. G.

10.1101/157198 — genomics — Posted on 2017-06-28

147 Nanopore-based single molecule sequencing of the D4Z4 array responsible for facioscapulohumeral muscular dystrophy

Mitsuhashi, S.; Nakagawa, S.; Ueda, M.; Imanishi, T.; Mitsuhashi, H.

10.1101/157040 — bioinformatics — Posted on 2017-06-28

148 The sequence of a male-specific genome region containing the sex determination switch in Aedes aegypti

Turner, J.; Krishna, R.; Van 't Hof, A. E.; Sutton, E. R.; Matzen, K.; Darby, A. C.

10.1101/122804 — genetics — Posted on 2017-06-28

149 Hypoosmolar dose-dependent swelling occurs in both pyramidal neurons and astrocytes in acute hippocampal slices

Murphy, T. R.; Davila, D.; Cuvelier, N.; Young, L. R.; Lauderdale, K.; Binder, D. K.; Fiacco, T. A.

10.1101/157180 — neuroscience — Posted on 2017-06-28

150 Systems Therapeutics for Axonal Regeneration in the Central Nervous System

Siddiq, M. M.; Zorina, Y.; Hansen, J.; Yadaw, A.; Rabinovich, V.; Gregorich, S. M.; Xiong, Y.; Kaplan, E.; Blitzer, R. D.; Filbin, M. T.; Passaglia, C. L.; Iyengar, R.

10.1101/157099 — neuroscience — Posted on 2017-06-28

151 Alpha EEG power reflects the suppression of Pavlovian bias during social reinforcement learning

Thompson, J. C.; Westwater, M. L.

10.1101/153668 — neuroscience — Posted on 2017-06-28

152 Linkage mapping of yeast cross protection connects gene expression variation to a higher-order organismal trait

Stuecker, T. N.; Scholes, A. N.; Lewis, J. A.

10.1101/152793 — genetics — Posted on 2017-06-28

153 Sign of selection on mutation rate modifiers depends on population size

Raynes, Y.; Wylie, C. S.; Sniegowski, P. D.; Weinreich, D. M.

10.1101/157131 — evolutionary biology — Posted on 2017-06-28

154 Origin of pest lineages of the Colorado potato beetle, Leptinotarsa decemlineata

Izzo, V.; Chen, Y. H.; Schoville, S. D.; Wang, C.; Hawthorne, D. J.

10.1101/156612 — evolutionary biology — Posted on 2017-06-28

155 Transit and integration of extracellular mitochondria in human heart cells

Cowan, D. B.; Yao, R.; Thedsanamoorthy, J. K.; Zurakowski, D.; del Nido, P. J.; McCully, J. D.

10.1101/157164 — cell biology — Posted on 2017-06-28

156 Universal Microfluidic System for Analysis and Control of Cell Dynamics

Zhang, C.; Tu, H.-L.; Jia, G.; Mukhtar, T.; Taylor, V.; Rzhetsky, A.; Tay, S.

10.1101/157057 — bioengineering — Posted on 2017-06-28

157 Pattern separation of spiketrains by individual granule cells of the dentate gyrus

Madar, A. D.; Ewell, L. A.; Jones, M. V.

10.1101/107706 — neuroscience — Posted on 2017-06-28

158 Parallel evolution of two clades of a major Atlantic endemic Vibrio parahaemolyticus pathogen lineage by independent acquisition of related pathogenicity islands

Xu, F.; Gonzalez-Escalona, N.; Drees, K. P.; Sebra, R. P.; Cooper, V. S.; Jones, S. H.; Whistler, C. A.

10.1101/155234 — evolutionary biology — Posted on 2017-06-28

159 Insular cortex sub-region-dependent distribution pattern of α-synuclein immunoreactivity in Parkinson’s disease and dementia with Lewy bodies

Fathy, Y. Y.; de Jong, F. J.; van Dam, A.-M.; Rozemuller, A. J. M.; van de Berg, W. D. J.

10.1101/156984 — neuroscience — Posted on 2017-06-28

160 Neural Responses to Heartbeats of Physically Trained and Sedentary Young Adults

Perakakis, P.; Luque-Casado, A.; Ciria, L. F.; Ivanov, P. C.; Sanabria, D.

10.1101/156802 — neuroscience — Posted on 2017-06-28

161 Discrete and coordinated encoding of punishment contingent on rewarded actions by prefrontal cortex and VTA

Park, J.; Moghaddam, B.

10.1101/157032 — neuroscience — Posted on 2017-06-28

162 The Mouse Cortical Interareal Network Reveals Well Defined Connectivity Profiles and an Ultra Dense Cortical Graph

Gamanut, R.; Kennedy, H.; Toroczkai, Z.; Van Essen, D.; Knoblauch, K.; Burkhalter, A.

10.1101/156976 — neuroscience — Posted on 2017-06-28

163 Increased prefrontal activity with aging reflects nonspecific neural responses rather than compensation

Morcom, A. M.; - Cambridge Centre for Ageing and Neuroscience (Cam-, ; Henson, R. N.

10.1101/156935 — neuroscience — Posted on 2017-06-28

164 Bacterial community profiles and Vibrio parahaemolyticus abundance in individual oysters and their association with estuarine ecology

Marcinkiewicz, A. L.; Schuster, B. M.; Jones, S. H.; Cooper, V. S.; Whistler, C. A.

10.1101/156851 — microbiology — Posted on 2017-06-28

165 Human-specific changes in two functional enhancers of FOXP2

Benitez-Burraco, A.; Torres-Ruiz, R.; Gelabert Xirinachs, P.; Lalueza-Fox, C.; Rodriguez-Perales, S.; Garcia-Bellido, P.

10.1101/157016 — evolutionary biology — Posted on 2017-06-28

166 Distinct epigenetic shift in a subset of Glioma CpG island methylator phenotype (G-CIMP) during tumor recurrence

de Souza, C. F.; Sabedot, T. S.; Malta, T. M.; Stetson, L.; Morozova, O.; Sokolov, A.; Laird, P. W.; Wiznerowicz, M.; Iavarone, A.; Snyder, J.; deCarvalho, A. C.; Sanborn, Z.; McDonald, K. L.; Friedman, W. A.; Tirapelli, D.; Poisson, L.; Mikkelsen, T.; Carlotti, C. G.; Kalkanis, S. N.; Zenklusen, J. C.; Salama, S. R.; Barnholtz-Sloan, J. S.; Noushmehr, H.

10.1101/156646 — cancer biology — Posted on 2017-06-28

167 Genetic-metabolic coupling for targeted metabolic engineering

Cardinale, S.; Tueros Farfan, F. G.; Sommer, M. O. A.

10.1101/156927 — bioengineering — Posted on 2017-06-28

168 Coordinated Changes In The Accumulation Of Metal Ions In Maize (Zea mays ssp. mays L.) In Response To Inoculation With The Arbuscular Mycorrhizal Fungus Funneliformis mosseae

Flores-Ramirez, M. R.; Rellan-Alvarez, R.; Wozniak, B.; Gebreselassie, M.-N.; Jakobsen, I.; Olalde-Portugal, V.; Baxter, I.; Paszkowski, U.; Sawers, R.

10.1101/135459 — plant biology — Posted on 2017-06-28

169 Coding sequence of firefly luciferase reporter gene affects specific hyper expression in cpl1 mutant.

Koiwa, H.; Fukudome, A.

10.1101/145011 — plant biology — Posted on 2017-06-28

170 Classes and continua of hippocampal CA1 inhibitory neurons revealed by single-cell transcriptomics

Harris, K. D.; Bengtsson Gonzales, C.; Hochgerner, H.; Skene, N. G.; Magno, L.; Katona, L.; Somogyi, P.; Kessaris, N.; Linnarsson, S.; Hjerling-Leffler, J.

10.1101/143354 — neuroscience — Posted on 2017-06-28

171 Lewy pathology in Parkinson’s disease consists of a crowded organellar membranous medley

Shahmoradian, S. H.; Genoud, C.; Graff-Meyer, A.; Hench, J.; Moors, T.; Schweighauser, G.; Wang, J.; Goldie, K. N.; Suetterlin, R.; Castano-Diez, D.; Perez-Navarro, P.; Huisman, E.; Ipsen, S.; Ingrassia, A.; de Gier, Y.; Rozemuller, A. J. M.; Da Paepe, A.; Erny, J.; Staempfli, A.; Hoernschemeyer, J.; Grosserueschkamp, F.; Niedieker, D.; El-Mashtoly, S. F.; Quadri, M.; van IJcken, W. F. J.; Bonifati, V.; Gerwert, K.; Bohrmann, B.; Frank, S.; Britschgi, M.; Stahlberg, H.; van de Berg, W.; Lauer, M. E.

10.1101/137976 — neuroscience — Posted on 2017-06-28

172 Transcription of Repeats Activates INterferon (TRAIN) in response to chromatin destabilization induced with anti-cancer small molecule

Leonova, Y.; Safina, A.; Nesher, E.; Sandlesh, P.; Pratt, R.; Burkhart, C.; Lipchick, B.; Frangou, C.; Koman, I.; Wang, J.; Kirsanov, K.; Yakubovskaya, M.; Gudkov, A.; Gurova, K.

10.1101/142471 — molecular biology — Posted on 2017-06-28

173 Melanism patches up the defective cuticular morphological traits through promoting the up-regulation of cuticular protein-coding genes in Bombyx mori

Qiao, L.; Wang, R.-x.; Hao, Y.-j.; Hu, H.; Xiong, G.; He, S.-z.; Song, J.-b.; Lu, K.-p.; Mallet, J.; Xin, Y.-q.; Chen, B.; Dai, F.-y.

10.1101/155002 — genetics — Posted on 2017-06-28

174 OpenMM 7: Rapid Development of High Performance Algorithms for Molecular Dynamics

Eastman, P.; Swails, J.; Chodera, J. D.; McGibbon, R. T.; Zhao, Y.; Beauchamp, K. A.; Wang, L.-P.; Simmonett, A. C.; Harrigan, M. P.; Stern, C. D.; Wiewiora, R. P.; Brooks, B. R.; Pande, V. S.

10.1101/091801 — biophysics — Posted on 2017-06-28

175 Both Lipopolysaccharide And Lipoteichoic Acids Potently Induce Anomalous Fibrin Amyloid Formation: Assessment With Novel Amytracker™ Stains

Pretorius, E.; Page, M. J.; Hendricks, L.; Nkosi, N. B.; Benson, S. R.; Kell, D. B.

10.1101/143867 — biophysics — Posted on 2017-06-28

176 Automated Recommendation Of Metabolite Substructures From Mass Spectra Using Frequent Pattern Mining

Mrzic, A.; Meysman, P.; Bittremieux, W.; Laukens, K.

10.1101/134189 — bioinformatics — Posted on 2017-06-28

177 Feedforward inhibition allows input summation to vary in recurrent cortical networks

Histed, M. H.

10.1101/109736 — neuroscience — Posted on 2017-06-28

178 The mechanism of transcription start site selection

Yu, L.; Winkelman, J.; Pukhrambam, C.; Strick, T.; Nickels, B.; Ebright, R. H.

10.1101/156877 — molecular biology — Posted on 2017-06-28

179 Molybdenum-based diazotrophy in a Sphagnum peatland in northern Minnesota

Warren, M. J.; Lin, X.; Gaby, J. C.; Kretz, C. B.; Kolton, M.; Morton, P. L.; Pett-Ridge, J.; Weston, D. J.; Schadt, C. W.; Kostka, J. E.; Glass, J. B.

10.1101/114918 — microbiology — Posted on 2017-06-28

180 A high density linkage map reveals sexual dimorphism in recombination landscapes in red deer (Cervus elaphus)

Johnston, S. E.; Huisman, J.; Ellis, P. A.; Pemberton, J. M.

10.1101/100131 — genomics — Posted on 2017-06-28

181 High-resolution mapping of heteroduplex DNA formed during UV-induced and spontaneous mitotic recombination events in yeast

Yin, Y.; Dominska, M.; Yim, E.; Petes, T. D.

10.1101/130054 — genetics — Posted on 2017-06-28

182 CRISPRi is not strand-specific and redefines the transcriptional landscape

Howe, F. S.; Russell, A.; El-Sagheer, A.; Nair, A.; Brown, T.; Mellor, J.

10.1101/156950 — genetics — Posted on 2017-06-28

183 Isolation and Gene Flow in a Speciation Continuum in Newts

Pabijan, M.; Zielinski, P.; Dudek, K.; Stuglik, M.; Babik, W.

10.1101/095877 — evolutionary biology — Posted on 2017-06-28

184 Identification And Evolutionary Analysis Of Eight Non-Coding Genomic Elements Regulating Neurodevelopmental Genes

Novo, F. J.

10.1101/150482 — evolutionary biology — Posted on 2017-06-28

185 To beard, or not to beard: linking sexual selection on masculinity, embryonic neural crest cells, and human self-domestication

Gleeson, B. T.

10.1101/143875 — evolutionary biology — Posted on 2017-06-28

186 A National Estimate of the Health and Cost Burden of Escherichia coli Bacteraemia in the Hospital Setting: The Importance of Antibiotic Resistance.

Naylor, N. R.; Pouwels, K. B.; Hope, R.; Green, N.; Henderson, K. L.; Knight, G. M.; Atun, R.; Robotham, J. V.; Deeny, S.

10.1101/153775 — epidemiology — Posted on 2017-06-28

187 Dynamics of the IFT Machinery at the Ciliary Tip

Chien, A.; Shih, S. M.; Bower, R.; Tritschler, D.; Porter, M. E.; Yildiz, A.

10.1101/156844 — cell biology — Posted on 2017-06-28

188 A Bulky Glycocalyx Fosters Metastasis Formation by Promoting G1 Cell Cycle Progression

Woods, E. C.; Barnes, J. M.; Pickup, M. W.; Pedram, K.; Kai, F.; Hollander, M. J.; Weaver, V. M.; Bertozzi, C. R.

10.1101/156893 — cancer biology — Posted on 2017-06-28

189 Epitope immunogenicity prediction through repertoire-wide TCR-peptide contact profiles

Ogishi, M.; Yotsuyanagi, H.

10.1101/155317 — immunology — Posted on 2017-06-28

190 Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans

Daugherty, A. C.; Yeo, R.; Buenrostro, J. D.; Greenleaf, W. J.; Kundaje, A.; Brunet, A.

10.1101/088732 — genomics — Posted on 2017-06-28

191 Comprehensive Benchmarking and Ensemble Approaches for Metagenomic Classifiers

McIntyre, A.; Ounit, R.; Afshinnekoo, E.; Prill, R.; Henaff, E.; Alexander, N.; Minot, S.; Danko, D.; Foox, J.; Ahsanuddin, S.; Tighe, S.; Hasan, N. A.; Subramanian, P.; Moffat, K.; Levy, S.; Lonardi, S.; Greenfield, N.; Colwell, R.; Rosen, G.; Mason, C. E.

10.1101/156919 — genomics — Posted on 2017-06-28

192 Melanism patches up the defective cuticular morphological traits through promoting the up-regulation of cuticular protein-coding genes in Bombyx mori

Qiao, L.; Wang, R.-x.; Hao, Y.-j.; Hu, H.; Xiong, G.; He, S.-z.; Song, J.-b.; Lu, K.-p.; Mallet, J.; Xin, Y.-q.; Chen, B.; Dai, F.-y.

10.1101/155002 — genetics — Posted on 2017-06-28

193 Habitat preference of an herbivore shapes the habitat distribution of its host plant

Alexandre, N. M.; Humphrey, P. T.; Frazier, J.; Gloss, A. D.; Lee, J.; Affeldt, H. A.; Whiteman, N. K.

10.1101/156240 — ecology — Posted on 2017-06-28

194 Diffusion as a ruler: modeling kinesin diffusion as a length sensor for intraflagellar transport

Hendel, N. L.; Thomson, M.; Marshall, W. F.

10.1101/156760 — biophysics — Posted on 2017-06-28

195 Epigenetic Memory via Concordant DNA Methylation Persists in Mammalian Toti- and Pluripotent Stem Cells

Choi, M.; Genereux, D. P.; Goodson, J.; Al-Azzawi, H.; Allain, S. Q.; Simon, N.; Palasek, S.; Ware, C. B.; Cavanaugh, C.; Miller, D. G.; Johnson, W. C.; Sinclair, K. D.; Stöger, R.; Laird, C. D.

10.1101/072488 — genetics — Posted on 2017-06-28

196 Blind sparse deconvolution for inferring spike trains from fluorescence recordings

Tubiana, J.; Wolf, S.; Debregeas, G.

10.1101/156364 — neuroscience — Posted on 2017-06-28

197 Comprehensive Benchmarking and Ensemble Approaches for Metagenomic Classifiers

Mason, C.; McIntyre, A.; Ounit, R.; Afshinnekoo, E.; Prill, R.; Henaff, E.; Alexander, N.; Minot, S.; Danko, D.; Foox, J.; Ahsanuddin, S.; Tighe, S.; Hasan, N. A.; Subramanian, P.; Moffat, K.; Levy, S.; Lonardi, S.; Greenfield, N.; Colwell, R.; Rosen, G.

10.1101/156919 — genomics — Posted on 2017-06-28

198 Xbra and Smad-1 response elements cooperate in PV.1 promoter to inhibit the early neurogenesis in Xenopus embryos

Kumar, S.; Umair, Z.; Yoon, J.; Lee, U.; Kim, S.; Park, J.-B.; Lee, J.-Y.; Kim, J.

10.1101/156992 — developmental biology — Posted on 2017-06-28

199 Caspase-8, RIPK1, and RIPK3 Coordinately Regulate Retinoic Acid-Induced Cell Differentiation and Necroptosis

Someda, M.; Kuroki, S.; Tachibana, M.; Yonehara, S.

10.1101/156901 — cell biology — Posted on 2017-06-28

200 Miniring approach for high-throughput drug screenings in 3D tumor models

Phan, N.; Tofig, B.; Janzen, D.; Huang, J.; Memarzadeh, S.; Damoiseaux, R.; Soragni, A.

10.1101/138412 — cancer biology — Posted on 2017-06-28

201 Partial Unwinding of Transmembrane Helices Facilitates Alternating Access in the Neurotransmitter:Sodium Symporter LeuT

Merkle, P. S.; Gotfryd, K.; Cuendet, M. A.; Leth-Espensen, K. Z.; Gether, U.; Loland, C. J.; Rand, K. D.

10.1101/156968 — biophysics — Posted on 2017-06-28

202 Hormonal correlates of pathogen disgust: Testing the Compensatory Prophylaxis Hypothesis

Jones, B.; Hahn, A.; Fisher, C.; Wang, H.; Kandrik, M.; Tybur, J.; DeBruine, L.

10.1101/156430 — animal behavior and cognition — Posted on 2017-06-28

203 Repeated-ischaemic exercise enhances mitochondrial and ion transport gene adaptations in human skeletal muscle: Role of muscle redox state and AMPK

Christiansen, D.; Murphy, R. M.; Bangsbo, J.; Stathis, C.; Bishop, D. J.

10.1101/156505 — physiology — Posted on 2017-06-27

204 Estimating short-term synaptic plasticity from pre- and postsynaptic spiking

Ghanbari, A.; Malyshev, A.; Volgushev, M.; Stevenson, I.

10.1101/156687 — neuroscience — Posted on 2017-06-27

205 More Highly Myelinated White Matter Tracts are Associated with Faster Processing Speed in Healthy Adults

Chopra, S.; Shaw, M.; Shaw, T.; Sachdev, P. S.; Anstey, K. J.; Cherbuin, N.

10.1101/152546 — neuroscience — Posted on 2017-06-27

206 HyperTRIBE identifies many in vivo targets of a RNA-binding protein

Xu, W.; Rahman, R.; Rosbash, M.

10.1101/156828 — molecular biology — Posted on 2017-06-27

207 Melanism patches up the defective cuticular morphological traits through promoting the up-regulation of cuticular protein-coding genes in Bombyx mori

Qiao, L.; Wang, R.-x.; Hao, Y.-j.; Hu, H.; Xiong, G.; He, S.-z.; Song, J.-b.; Lu, K.-p.; Mallet, J.; Xin, Y.-q.; Chen, B.; Dai, F.-y.

10.1101/155002 — genetics — Posted on 2017-06-27

208 Tension-dependent stretching and folding of ZO-1 controls the localization of its interactors

Spadaro, D.; Le, S.; Laroche, T.; Mean, I.; Jond, L.; Yan, J.; Citi, S.

10.1101/156513 — cell biology — Posted on 2017-06-27

209 Characterization of a spectrally diverse set of fluorescent proteins as FRET acceptors for mTurquoise2

Mastop, M.; Bindels, D. S.; Shaner, N. C.; Postma, M.; Gadella, T. W. J.; Goedhart, J.

10.1101/156448 — cell biology — Posted on 2017-06-27

210 Ultrafast comparison of personal genomes

Glusman, G.; Mauldin, D. E.; Hood, L. E.; Robinson, M.

10.1101/130807 — bioinformatics — Posted on 2017-06-27

211 De novo discovery of structural motifs in RNA 3D structures through clustering

Ge, P.; Islam, S.; Zhong, C.; Zhang, S.

10.1101/155580 — bioinformatics — Posted on 2017-06-27

212 GrapHi-C: Graph-based visualization of Hi-C Datasets

MacKay, K.; Kusalik, A.; Eskiw, C. H.

10.1101/156679 — bioinformatics — Posted on 2017-06-27

213 IndeCut evaluates performance of network motif discovery algorithms

Ansariola, M.; Megraw, M.; Koslicki, D.

10.1101/156836 — systems biology — Posted on 2017-06-27

214 Widespread Negative Frequency-Dependent Selection Maintains Diversity in the Legume-Rhizobia Symbiosis: Balancing nodulation may explain the paradox of rhizobium diversity

Siler, E.; Friesen, M. L.

10.1101/153866 — plant biology — Posted on 2017-06-27

215 Is it possible to keep the exoskeleton of the crab Callinectes ornatus soft for several days?

Hungria, D. B.; Silva, U.; Pereira, L.; Cella-Ribeiro, A.; Ostrensky, A.

10.1101/156638 — physiology — Posted on 2017-06-27

216 CFTR Modulates Wnt/β-Catenin Signaling and Stem Cell Proliferation in Murine Intestine

Strubberg, A. M.; Liu, J.; Walker, N. M.; Stefanski, C. D.; MacLeod, R. J.; Magness, S. T.; Clarke, L. L.

10.1101/156562 — physiology — Posted on 2017-06-27

217 Robustness of spike deconvolution for calcium imaging of neural spiking

Pachitariu, M.; Stringer, C.; Harris, K. D.

10.1101/156786 — neuroscience — Posted on 2017-06-27

218 Activity based checkpoints ensure circuit stability in the olfactory system

James, K. N.; Throesch, B. T.; Davini, W.; Eade, K. T.; Ghosh, S.; Lee, S.; Torabi-Rander, N.; Baldwin, K.

10.1101/156372 — neuroscience — Posted on 2017-06-27

219 Mice use robust and common strategies to discriminate natural scenes

Yu, Y.; Hira, R.; Stirman, J. N.; Yu, W.; Smith, I. T.; Smith, S. L.

10.1101/156653 — neuroscience — Posted on 2017-06-27

220 SID-1 domains important for dsRNA import in C. elegans

Whangbo, J. S.; Weisman, A. S.; Lu, J.; Chae, J.; Hunter, C. P.

10.1101/156703 — genetics — Posted on 2017-06-27

221 Conserved noncoding transcription and core promoter regulatory code in early Drosophila development

Batut, P. J.; Gingeras, T. R.

10.1101/156596 — genetics — Posted on 2017-06-27

222 Mapping Loci that Control Tuber and Foliar Symptoms Caused by PVY in Autotetraploid Potato (Solanum tuberosum L.)

da Silva, W. L.; Ingram, J. T.; Hackett, C. A.; Coombs, J. J.; Douches, D.; Bryan, G.; De Jong, W.; Gray, S.

10.1101/156539 — genetics — Posted on 2017-06-27

223 Multilocus DNA barcoding - Species Identification with Multilocus Data

Liu, J.; Jiang, J.; Song, S.; Tornabene, L.; Chabarria, R.; Naylor, G. J.; Li, C.

10.1101/155861 — evolutionary biology — Posted on 2017-06-27

224 Selection constrains high rates of satellite DNA mutation in Daphnia pulex

Flynn, J. M.; Caldas, I.; Cristescu, M. E.; Clark, A. G.

10.1101/156554 — evolutionary biology — Posted on 2017-06-27

225 Evolutionarily younger and faster diversifying plants are more threatened by extinction

Tanentzap, A. J.; Igea, J.; Johnston, M. G.

10.1101/152215 — evolutionary biology — Posted on 2017-06-27

226 Diffusion as a ruler: modeling kinesin diffusion as a length sensor for intraflagellar transport

Hendel, N. L.; Thomson, M.; Marshall, W. F.

10.1101/156760 — biophysics — Posted on 2017-06-27

227 ADAGE signature analysis: differential expression analysis with data-defined gene sets

Tan, J.; Huyck, M.; Hu, D.; Zelaya, R. A.; Hogan, D. A.; Greene, C. S.

10.1101/156620 — bioinformatics — Posted on 2017-06-27

228 Detecting repeated cancer evolution in human tumours from multi-region sequencing data

Caravagna, G.; Giarratano, Y.; Ramazzotti, D.; Graham, T. A.; Sanguinetti, G.; Sottoriva, A.

10.1101/156729 — bioinformatics — Posted on 2017-06-27

229 Scikit-ribo: Accurate estimation and robust modeling of translation dynamics at codon resolution

Fang, H.; Huang, Y.-F.; Radhakrishnan, A.; Siepel, A.; Lyon, G. J.; Schatz, M. C.

10.1101/156588 — bioinformatics — Posted on 2017-06-27

230 Germline Cas9 Expression Yields Highly Efficient Genome Engineering in a Major Worldwide Disease Vector, Aedes aegypti

Li, M.; Bui, M.; Yang, T.; White, B.; Akbari, O.

10.1101/156778 — bioengineering — Posted on 2017-06-27

231 Chemical-microstructural-nanomechanical variations in the structural units of the cuttlebone of Sepia officinalis

North, L.; Labonte, D.; Oyen, M.; Coleman, M. P.; Caliskan, H. B.; Johnston, R.

10.1101/156810 — bioengineering — Posted on 2017-06-27

232 The interplay of demography and selection during maize domestication and expansion

Wang, L.; Beissinger, T. M.; Lorant, A.; Ross-Ibarra, C.; Ross-Ibarra, J.; Hufford, M.

10.1101/114579 — evolutionary biology — Posted on 2017-06-27

233 A persistent lack of International representation on editorial boards in environmental biology

Espin, J.; Palmas-Perez, S.; Carrasco-Rueda, F.; Riemer, K.; Allen, P.; Berkebile, N.; Hecht, K.; Kastner-Wilcox, R. K.; Nunez-Regueiro, M.; Prince, C.; Rios-Marin, M. C.; Ross, E. P.; Sangha, B.; Tyler, T.; Ungvari-Martin, J.; Villegas, M.; Cataldo, T.; Bruna, E.

10.1101/131292 — scientific communication and education — Posted on 2017-06-27

234 Discovering in vivo eQTL interactions with interferon status and drug exposure from a lupus clinical trial

Davenport, E. E.; Amariuta, T.; Gutierrez-Arcelus, M.; Slowikowski, K.; Westra, H.-J.; Zhang, Y.; Pearson, S.; von Schack, D.; Beebe, J. S.; Bing, N.; Vincent, M. S.; Zhang, B.; Raychaudhuri, S.

10.1101/118703 — genomics — Posted on 2017-06-27

235 MaxTiC: Fast Ranking Of A Phylogenetic Tree By Maximum Time Consistency With Lateral Gene Transfers

Chauve, C.; Rafiey, A.; Davin, A. A.; Scornavacca, C.; Veber, P.; Boussau, B.; Szollosi, G.; Daubin, V.; Tannier, E.

10.1101/127548 — evolutionary biology — Posted on 2017-06-27

236 Health Status By Gender, Hair Color, And Eye Color: Red-Haired Women Are The Most Divergent With The Lowest Viability And The Highest Fertility

Frost, P.; Kleisner, K.; Flegr, J.

10.1101/139295 — evolutionary biology — Posted on 2017-06-27

237 Discordant inheritance of chromosomal and extrachromosomal DNA elements contributes to dynamic disease evolution in glioblastoma

deCarvalho, A. C.; Kim, H.; Poisson, L. M.; Winn, M. E.; Mueller, C.; Cherba, D.; Koeman, J.; Seth, S.; Protopopov, A.; Felicella, M.; Zheng, S.; Multani, A.; Zhang, Y.; Zhang, J.; Nam, D.-H.; Petricoin, E. F.; Chin, L.; Mikkelsen, T.; Verhaak, R.

10.1101/081158 — cancer biology — Posted on 2017-06-27

238 Genetic variants affecting plant size and chemical defenses jointly shape herbivory in Arabidopsis

Gloss, A. D.; Brachi, B.; Feldmann, M. J.; Groen, S. C.; Bartoli, C.; Gouzy, J.; LaPlante, E. R.; Meyer, C. G.; Pyon, H. S.; Rogan, S. C.; Roux, F.; Bergelson, J.; Whiteman, N. K.

10.1101/156299 — plant biology — Posted on 2017-06-27

239 Video rate volumetric Ca2+ imaging across cortical layersusing Seeded Iterative Demixing (SID) microscopy

Noebauer, T.; Skocek, O.; Pernia-Andrade, A. J.; Weilguny, L.; Martinez Traub, F.; Molodtsov, M. I.; Vaziri, A.

10.1101/155572 — neuroscience — Posted on 2017-06-27

240 MELD: Mixed Effects for Large Datasets

Nielson, D. M.; Sederberg, P. B.

10.1101/156315 — neuroscience — Posted on 2017-06-27

241 An evaluation of the efficacy, reliability, and sensitivity of motion correction strategies for resting-state functional MRI

Parkes, L.; Fulcher, B. D.; Yucel, M.; Fornito, A.

10.1101/156380 — neuroscience — Posted on 2017-06-27

242 Engagement of spinal- vs prefrontal-projecting locus coeruleus neurons parses analgesia from aversion & anxiety in rats

Hirschberg, S.; Li, Y.; Randall, A.; Kremer, E. J.; Pickering, A. E.

10.1101/156307 — neuroscience — Posted on 2017-06-27

243 Voltage-gating of mechanosensitive PIEZO channels

Moroni, M.; Servin-Vences, M. R.; Fleischer, R.; Lewin, G. R.

10.1101/156489 — neuroscience — Posted on 2017-06-27

244 Artificial anion-conducting channelrhodopsins with tuned spectra, modified kinetics and enhanced light sensitivity

Wietek, J.; Rodriguez-Rozada, S.; Tutas, J.; Tenedini, F.; Grimm, C.; Oertner, T.; Soba, P.; Hegemann, P.; Wiegert, J. S.

10.1101/156422 — neuroscience — Posted on 2017-06-27

245 Evolution with a seed bank: the population genetic consequences of microbial dormancy

Shoemaker, W. R.; Lennon, J. T.

10.1101/156356 — microbiology — Posted on 2017-06-27

246 Community dynamics in parallelized, aerobic, single carbon-source enrichments

Flynn, T. M.; Koval, J. C.; Greenwald, S. M.; Owens, S. M.; Kemner, K. M.; Antonopoulos, D. A.

10.1101/154781 — microbiology — Posted on 2017-06-27

247 Aging-associated dysbiosis increases susceptibility to enteric viral infection in Drosophila

Sansone, C.; Cohen, J.; Gold, B.; Zhu, W.; Misic, A. M.; Beiting, D. P.; Winter, S. E.; Cherry, S.

10.1101/156455 — immunology — Posted on 2017-06-27

248 Mutation rates in seeds and seed-banking influence substitution rates across the angiosperm phylogeny

Dann, M.; Bellot, S.; Schepella, S.; Schaefer, H.; Tellier, A.

10.1101/156398 — evolutionary biology — Posted on 2017-06-27

249 Habitat preference of an herbivore shapes the habitat distribution of its host plant

Alexandre, N. M.; Humphrery, P. T.; Frazier, J.; Gloss, A. D.; Lee, J.; Affeldt, H. A.; Whiteman, N. K.

10.1101/156240 — ecology — Posted on 2017-06-27

250 Replacing reprogramming factors with antibodies selected from autocrine antibody libraries

Blanchard, J. W.; Xie, J.; El-Mecharrafie, N.; Gross, S.; Lee, S.; Lerner, R.; Baldwin, K. K.

10.1101/156349 — cell biology — Posted on 2017-06-27

251 CD55 regulates self-renewal and cisplatin resistance in endometrioid tumors

Saygin, C.; Wiechert, A.; Rao, V. S.; Alluru, R.; Connor, E.; Thiagarajan, P. S.; Hale, J. S.; Li, Y.; Chumakova, A.; Jarrar, A.; Parker, Y.; Lindner, D. J.; Nagaraj, A. B.; Kim, J. J.; DiFeo, A.; Abdul-Karim, F. W.; Michener, C.; Rose, P. G.; DeBernardo, R.; Mahdi, H.; McCrae, K. R.; Lin, F.; Lathia, J. D.; Reizes, O.

10.1101/155887 — cancer biology — Posted on 2017-06-27

252 Mitotic progression following DNA damage enables pattern recognition within micronuclei

Harding, S. M.; Benci, J. L.; Irianto, J.; Discher, D. E.; Minn, A. J.; Greenberg, R. A.

10.1101/156414 — cancer biology — Posted on 2017-06-27

253 A dual transcript-discovery approach to improve the delimitation of gene features from RNA-seq data in the chicken model

Orgeur, M.; Martens, M.; Börno, S. T.; Timmermann, B.; Duprez, D.; Stricker, S.

10.1101/156406 — bioinformatics — Posted on 2017-06-27

254 Polygenic hazard scores in preclinical Alzheimer’s disease

Tan, C. H.; Sugrue, L. P.; Broce, I. J.; Tong, E.; Tan, J.; Hess, C. P.; Dillon, W. P.; Bonham, L. W.; Yokoyama, J. S.; Rabinovici, G. D.; Rosen, H. J.; Miller, B. L.; Hyman, B. T.; Schellenberg, G. D.; Besser, L. M.; Kukull, W. A.; Karch, C. M.; Brewer, J. B.; Kauppi, K.; McEvoy, L. K.; Andreassen, O. A.; Dale, A. M.; Fan, C. C.; Desikan, R. S.

10.1101/156331 — genetics — Posted on 2017-06-27

255 A comprehensive portrait of cilia and ciliopathies from a CRISPR-based screen for Hedgehog signaling

Breslow, D. K.; Hoogendoorn, S.; Kopp, A. R.; Morgens, D. W.; Vu, B. K.; Han, K.; Li, A.; Hess, G. T.; Bassik, M. C.; Chen, J. K.; Nachury, M. V.

10.1101/156059 — genetics — Posted on 2017-06-27

256 Unravelling the genomic basis and evolution of the pea aphid male wing dimorphism

Li, B.; Bickel, R. D.; Parker, B. J.; Vellichirammal, N. N.; Grantham, M.; Simon, J.-C.; Stern, D. L.; Brisson, J. A.

10.1101/156133 — evolutionary biology — Posted on 2017-06-27

257 MoMo: Discovery of post-translational modification motifs

Cheng, A.; Grant, C.; Bailey, T. L.; Noble, W.

10.1101/153882 — bioinformatics — Posted on 2017-06-27

258 Widespread translational remodeling during human neuronal differentiation

Blair, J. D.; Hockemeyer, D.; Doudna, J. A.; Bateup, H. S.; Floor, S. N.

10.1101/156190 — cell biology — Posted on 2017-06-26

259 Multi-BRCT domain protein Brc1 links Rhp18/Rad18 and γH2A to maintain genome stability during S-phase

Reubens, M.; Rozenzhak, S.; Russell, P.

10.1101/150714 — cell biology — Posted on 2017-06-26

260 Variation in the oxidative burst in response to wounding and bacterial infection among native and invading genotypes of yellow starthistle (Centaurea solstitialis)

Kaczowka, A. M.; Lu-Irving, P.; Baltrus, D. A.; Dlugosch, K. M.

10.1101/156083 — plant biology — Posted on 2017-06-26

261 Cell-type selective deletion of RSK2 reveals insights into altered signaling in Coffin-Lowry Syndrome

Zhu, H.; Strachan, R. T.; Urban, D.; Farrell, M.; Kroeze, W. K.; English, J. G.; Olsen, R. H. J.; Roth, B. L.

10.1101/156257 — neuroscience — Posted on 2017-06-26

262 An insula-central amygdala circuit for behavioral inhibition

Schiff, H. C.; Bouhuis, A. L.; Yu, K.; Penzo, M. A.; Li, H.; He, M.; Li, B.

10.1101/156216 — neuroscience — Posted on 2017-06-26

263 Neural mechanisms driving hunger-induced changes in sensory perception and behavior in Caenorhabditis elegans

Lau, H. E.; Cecere, Z. T.; Liu, Z.; Yang, C. J.; Sharpee, T. O.; Chalasani, S.

10.1101/156109 — neuroscience — Posted on 2017-06-26

264 Fluidic Microactuation of Flexible Electrodes for Neural Recording

Vitale, F.; Vercosa, D. G.; Rodriguez, A. V.; Pamulapati, S. S.; Seibt, F.; Lewis, E.; Yan, J. S.; Badhiwala, K.; Adnan, M.; Royer-Carfagni, G.; Beierlein, M.; Kemere, C.; Pasquali, M.; Robinson, J. T.

10.1101/155937 — neuroscience — Posted on 2017-06-26

265 Activation of Somatostatin Inhibitory Neurons by Lypd6-nAChRα2 System Restores Juvenile-like Plasticity in Adult Visual Cortex

Sadahiro, M.; Demars, M. P.; Burman, P.; Yevoo, P.; Smith, M. R.; Zimmer, A.; Morishita, H.

10.1101/155465 — neuroscience — Posted on 2017-06-26

266 Modulation of Ether-a-go-go related gene (ERG) current governs intrinsic persistent activity in rodent neocortical pyramidal cells

Cui, E. D.; Strowbridge, B.

10.1101/156075 — neuroscience — Posted on 2017-06-26

267 CRISPR-Cpf1 mediates efficient homology-directed repair and temperature-controlled genome editing

Moreno-Mateos, M. A.; Fernandez, J. P.; Rouet, R.; Lane, M. A.; Vejnar, C. E.; Mis, E.; Khokha, M. K.; Doudna, J. A.; Giraldez, A. J.

10.1101/156125 — genetics — Posted on 2017-06-26

268 Characterization of SID-1-dependent and independent intergenerational RNA transport pathways in Caenorhabditis elegans

Wang, E.; Hunter, C. P.

10.1101/156232 — genetics — Posted on 2017-06-26

269 Global DNA methylation, as estimated in blood samples, does not correlate with variations of body condition, anatomical features and hematological parameters in American bullfrogs (Lithobates catesbeianus) kept captive under distinct environmental conditions.

Ayala-Garcia, B.; Fuentes-Farias, A. L.; Gutierrez-Ospina, G.

10.1101/156265 — evolutionary biology — Posted on 2017-06-26

270 A pesticide paradox: Fungicides indirectly increase fungal infections

Rohr, J. R.; Brown, J.; Battaglin, W. A.; McMahon, T. A.; Relyea, R. A.

10.1101/156018 — ecology — Posted on 2017-06-26

271 Towards a Global Framework for Estimating Acclimation and Thermal Breadth that Predicts Risk from Climate Change

Rohr, J. R.; Civitello, D. J.; Cohen, J. M.; Roznik, E. A.; Sinervo, B.; Dell, A. I.

10.1101/156026 — ecology — Posted on 2017-06-26

272 FOXS1 is a Master Regulator of Pathological Epithelial to Mesenchymal Transition in Human Epithelia

Blenkinsop, T. A.; Swigut, T.; Boles, N.; Srinivasan, R.; Rada-Iglesias, A.; Wang, Q.; Stern, J.; Wysocka, J.; Temple, S.

10.1101/154369 — cell biology — Posted on 2017-06-26

273 DNA Replication Modulates R-loop Levels to Maintain Genome Stability

Hamperl, S.; Saldivar, J. C.; Bocek, M. J.; Cimprich, K. A.

10.1101/155978 — cell biology — Posted on 2017-06-26

274 Competition of Charge-Mediated and Specific Binding by Peptide-Tagged Cationic Liposome-DNA Nanoparticles In Vitro and In Vivo

Wonder, E.; Simon-Gracia, L.; Scodeller, P.; Majzoub, R. N.; Kotamraju, V. R.; Ewert, K.; Teesalu, T.; Safinya, C. R.

10.1101/156166 — biophysics — Posted on 2017-06-26

275 48-spot single-molecule FRET setup with periodic acceptor excitation

Ingargiola, A.; Segal, M.; Gulinatti, A.; Rech, I.; Labanca, I.; Maccagnani, P.; Ghioni, M.; Weiss, S.; Michalet, X.

10.1101/156182 — biophysics — Posted on 2017-06-26

276 Cofilin Drives Rapid Turnover and Fluidization of Entangled F-actin

McCall, P. M.; MacKintosh, F. C.; Kovar, D. R.; Gardel, M. L.

10.1101/156224 — biophysics — Posted on 2017-06-26

277 Systems-Level Annotation of Metabolomics Data Reduces 25,000 Features to Fewer than 1,000 Unique Metabolites

Mahieu, N. G.; Patti, G. J.

10.1101/155895 — biochemistry — Posted on 2017-06-26

278 Role of inhibitory control in modulating spread of focal ictal activity

Liou, J.-y.; Ma, H.; Wenzel, M.; Zhao, M.; Baird-Daniel, E.; Smith, E.; Daniel, A.; Emerson, R. G.; Yuste, R.; Schwartz, T. H.; Schevon, C.

10.1101/146407 — neuroscience — Posted on 2017-06-26

279 Systematic identification of novel regulatory interactions controlling biofilm formation in the bacterium Escherichia coli

Amores, G. R.; de las Heras, A.; Sanches-Medeiros, A.; Elfick, A.; Silva-Rocha, R.

10.1101/155432 — microbiology — Posted on 2017-06-26

280 A novel k-mer set memory (KSM) motif representation improves regulatory variant prediction

Guo, Y.; Tian, K.; Zeng, H.; Guo, X.; Gifford, D. K.

10.1101/130815 — genomics — Posted on 2017-06-26

281 Environmental factors dominate over host genetics in shaping human gut microbiota composition

Rothschild, D.; Weissbrod, O.; Barkan, E.; Korem, T.; Zeevi, D.; Costea, P. I.; Godneva, A.; Kalka, I. N.; Bar, N.; Zmora, N.; Pevsner-Fischer, M.; Israeli, D.; Kosower, N.; Malka, G.; Wolf, B. C.; Avnit-Sagi, T.; Lotan-Pompan, M.; Weinberger, A.; Halpern, Z.; Carmi, S.; Elinav, E.; Segal, E.

10.1101/150540 — genetics — Posted on 2017-06-26

282 aPKC-mediated displacement and actomyosin-mediated retention polarize Miranda in Drosophila neuroblasts

Hannaford, M.; Ramat, A.; Loyer, N.; Januschke, J.

10.1101/148213 — cell biology — Posted on 2017-06-26

283 powsimR: Power analysis for bulk and single cell RNA-seq experiments

Vieth, B.; Ziegenhain, C.; Parekh, S.; Enard, W.; Hellmann, I.

10.1101/117150 — bioinformatics — Posted on 2017-06-26

284 Patternize: An R Package For Quantifying Color Pattern Variation

Van Belleghem, S. M.; Papa, R.; Ortiz-Zuazaga, H.; Hendrickx, F.; Jiggins, C.; McMillan, W. O.; Counterman, B.

10.1101/121962 — bioinformatics — Posted on 2017-06-26

285 TiSAn: Tissue Specific Variant Annotation

Vervier, K.; Michaelson, J. J.

10.1101/141408 — bioinformatics — Posted on 2017-06-26

286 Delineating the macroscale areal organization of the macaque cortex in vivo

Xu, T.; Falchier, A.; Sullivan, E.; Linn, G.; Ramirez, J.; Ross, D.; Feczko, E.; Opitz, A.; Bagley, J.; Sturgeon, D.; Earl, E.; Miranda-Domingue, O.; Perrone, A.; Craddock, C.; Schroeder, C.; Colcombe, S.; Fair, D.; Milham, M.

10.1101/155952 — neuroscience — Posted on 2017-06-26

287 The Drosophila Y chromosome affects heterochromatin integrity genome-wide

Brown, E.; Bachtrog, D.

10.1101/156000 — genomics — Posted on 2017-06-26

288 The Y chromosome contributes to sex-specific aging in Drosophila

Brown, E.; Bachtrog, D.

10.1101/156042 — evolutionary biology — Posted on 2017-06-26

289 Single-molecule FISH in Drosophila muscle reveals location dependent mRNA composition of megaRNPs

Noma, A.; Smith, C. S.; Huisman, M.; Martin, R. M.; Moore, M. J.; Grunwald, D.

10.1101/156091 — cell biology — Posted on 2017-06-26

290 Tuning transcriptional regulation through signaling: A predictive theory of allosteric induction

Razo-Mejia, M.; Barnes, S. L.; Belliveau, N. M.; Chure, G.; Einav, T.; Lewis, M.; Phillips, R.

10.1101/111013 — biophysics — Posted on 2017-06-26

291 BPG: Seamless, Automated and Interactive Visualization of Scientific Data

P'ng, C.; Green, J.; Chong, L. C.; Waggott, D.; Prokopec, S. D.; Shamsi, M.; Nguyen, F.; Mak, D. Y. F.; Lam, F.; Albuquerque, M. A.; Wu, Y.; Jung, E. H.; Starmans, M. H. W.; Chan-Seng-Yue, M. A.; Yao, C. Q.; Liang, B.; Lalonde, E.; Haider, S.; Simone, N. A.; Sendorek, D.; Chu, K. C.; Moon, N. C.; Fox, N. S.; Grzadkowski, M. R.; Harding, N. J.; Fung, C.; Murdoch, A. R.; Houlahan, K. E.; Wang, J.; Garcia, D. R.; de Borja, R.; Sun, R. X.; Lin, X.; Chen, G. M.; Lu, A.; Shiah, Y.-J.; Zia, A.; Kearns, R.; Boutros, P.

10.1101/156067 — bioinformatics — Posted on 2017-06-26

292 Resistome SNP Calling via Read Colored de Bruijn Graphs

Alipanahi, B.; Muggli, M. D.; Jundi, M.; Noyes, N.; Boucher, C.

10.1101/156174 — bioinformatics — Posted on 2017-06-26

293 The effect of chronic and acute stressors, and their interaction, on gonadal function: an experimental test during gonadal recrudescence

Abolins-Abols, M.; Hanauer, R.; Rosvall, K.; Peterson, M.; Ketterson, E.

10.1101/156034 — physiology — Posted on 2017-06-26

294 Modelling of the cardiopulmonary responses to maximal aerobic exercise in patients with cystic fibrosis

Williams, C. A.; Wedgwood, K. C. A.; Mohammadi, H.; Tomlinson, O. W.; Tsaneva-Atanasova, K.

10.1101/155713 — physiology — Posted on 2017-06-26

295 Foreground-background segmentation revealed during natural image viewing

Papale, P.; Leo, A.; Cecchetti, L.; Handjaras, G.; Kay, K.; Pietrini, P.; Ricciardi, E.

10.1101/109496 — neuroscience — Posted on 2017-06-26

296 Combined social and spatial coding in a descending projection from the prefrontal cortex

Murugan, M.; Park, M.; Taliaferro, J.; Jang, H. J.; Cox, J.; Parker, N.; Bhave, V.; Nectow, A.; Pillow, J.; Witten, I.

10.1101/155929 — neuroscience — Posted on 2017-06-26

297 Modelling Phototaxis as a Collective Phenomenon inCyanobacterial Colonies

Varuni, P.; Menon, S. N.; Menon, G. I.

10.1101/155622 — microbiology — Posted on 2017-06-26

298 Suppressor screen connects HAD protein function to metabolic control in Plasmodium falciparum

Guggisberg, A. M.; Gandhi, A. Y.; Erlinger, S. J.; Merino, E. F.; Cassera, M. B.; Odom John, A. R.

10.1101/155523 — microbiology — Posted on 2017-06-26

299 Comparative transcriptomics of THP-1 monocytes in response to different pathogens

Thuer, E.; Gabaldon, T.

10.1101/155853 — genomics — Posted on 2017-06-26

300 On the dynamics of reproductive values and phenotypic traits in class-structured populations

Lion, S.

10.1101/155879 — evolutionary biology — Posted on 2017-06-26

301 The genetic basis and evolution of red blood cell sickling in deer

Esin, A.; Bergendahl, L. T.; Savolainen, V.; Marsh, J. A.; Warnecke, T.

10.1101/155903 — evolutionary biology — Posted on 2017-06-26

302 Legionella becoming a mutualist: adaptive processes shaping the genome of symbiont in the louse Polyplax serrata

Rihova, J.; Novakova, E.; Husnik, F.; Hypsa, V.

10.1101/155820 — evolutionary biology — Posted on 2017-06-26

303 Hydra, a model system for deciphering the mechanisms of aging and resistance to aging

Schenkelaars, Q.; Tomczyk, S.; Wenger, Y.; Ekundayo, K.; Girard, V.; Buzgariu, W.; Austad, S.; Galliot, B.

10.1101/155804 — evolutionary biology — Posted on 2017-06-26

304 Taking the short- or long-chain route: conversion efficiency of alpha linolenic acid to long-chain omega-3 fatty acids in aerial insectivore chicks

Twining, C. W.; Lawrence, P.; Winkler, D. W.; Flecker, A. S.; Brenna, J. T.

10.1101/155499 — ecology — Posted on 2017-06-26

305 Metabarcoding for the parallel identification of several hundred predators and their preys: application to bat species diet analysis

Galan, M.; Pons, J.-B.; Tournayre, O.; Pierre, E.; Leuchtmann, M.; Pontier, D.; Charbonnel, N.

10.1101/155721 — ecology — Posted on 2017-06-26

306 A transgenic toolkit for visualizing and perturbing microtubules reveals unexpected functions in the epidermis

Muroyama, A.; Lechler, T.

10.1101/155994 — cell biology — Posted on 2017-06-26

307 Rap1, AF6 and Pak4 cooperate with Par3 to promote ZA assembly and remodeling in the fly photoreceptor

Walther, R. F.; Burki, M.; Pinal Seoane, N.; Rogerson, C.; Pichaud, F.

10.1101/155945 — cell biology — Posted on 2017-06-26

308 General sexual desire, but not desire for uncommitted sexual relationships, tracks changes in women’s hormonal status

Jones, B.; Hahn, A.; Fisher, C.; Wang, H.; Kandrik, M.; DeBruine, L.

10.1101/155788 — animal behavior and cognition — Posted on 2017-06-26

309 An integral role for timing in interception

Chang, C.-J.; Jazayeri, M.

10.1101/155531 — animal behavior and cognition — Posted on 2017-06-26

310 Neurobehavioral dynamics of drowsiness

Noreika, V.; Kamke, M. R.; Canales-Johnson, A.; Chennu, S.; Mattingley, J. B.; Bekinschtein, T. A.

10.1101/155754 — neuroscience — Posted on 2017-06-26

311 Synaptic homeostasis at the Drosophila neuromuscular junction is a reversible signaling process that is sensitive to high temperature

Yeates, C. J.; Frank, C. A.

10.1101/154930 — neuroscience — Posted on 2017-06-26

312 Non-parametric test for connectivity detection in multivariate autoregressive networks and application to multiunit activity data

Gilson, M.; Tauste Campo, A.; Chen, X.; Thiele, A.; Deco, G.

10.1101/100669 — neuroscience — Posted on 2017-06-26

313 Rapid whole genome amplification and sequencing of low cell numbers in a bacteraemia model

Anscombe, C.; Misra, R.; Gharbia, S.

10.1101/153965 — microbiology — Posted on 2017-06-26

314 A National Estimate of the Health and Cost Burden of Escherichia coli Bacteraemia in the Hospital Setting: The Importance of Antibiotic Resistance.

Naylor, N. R.; Pouwels, K. B.; Hope, R.; Green, N.; Henderson, K. L.; Knight, G. M.; Atun, R.; Robotham, J. V.; Deeny, S.

10.1101/153775 — epidemiology — Posted on 2017-06-26

315 Pattern-Triggered Immunity And Cell Wall Integrity Maintenance Jointly Modulate Plant Stress Responses

Engelsdorf, T.; Gigli-Bisceglia, N.; Veerabagu, M.; McKenna, J. F.; Augstein, F.; van der Does, D.; Zipfel, C.; Hamann, T.

10.1101/130013 — plant biology — Posted on 2017-06-26

316 Development of Gene-Specific Real-Time PCR Screening Method for Detection of cp4-epsps Gene in GM Crops

Khosravi, S.; Tohidfar, M.; Koobaz, P.

10.1101/155127 — plant biology — Posted on 2017-06-26

317 In vivo magnetic recording of neuronal activity

Caruso, L.; Wunderle, T.; Lewis, C. M.; Valadeiro, J.; Trauchessec, V.; Trejo-Rosillo, J.; Amaral, J. P.; Ni, J.; Jendritza, P.; Fermon, C.; Cardoso, S.; Freitas, P. P.; Fries, P.; Pannetier-Lecoeur, M.

10.1101/092569 — neuroscience — Posted on 2017-06-26

318 Variation in the microbiome of the urogenital tract of koalas (Phascolarctos cinereus) with and without "wet bottom"

Legione, A. R.; Amery-Gale, J.; Lynch, M.; Haynes, L.; Gilkerson, J.; Devlin, J.; Sansom, F.

10.1101/099945 — microbiology — Posted on 2017-06-26

319 Viral outbreaks involve destabilized viruses: evidence from Ebola, Influenza and Zika

Aris-Brosou, S.; Ibeh, N.; Noël, J.

10.1101/070102 — evolutionary biology — Posted on 2017-06-26

320 Evidence for functional and non-functional classes of peptides translated from long non-coding RNAs

Ruiz-Orera, J.; Verdaguer-Grau, P.; Villanueva-Canas, J. L.; Messeguer, X.; Alba, M. M.

10.1101/064915 — evolutionary biology — Posted on 2017-06-26

321 Novel ‘housekeeping’ genes and an unusually heterogeneous distribution of transporter expression profiles in human tissues and cell lines, assessed using the Gini coefficient

O'Hagan, S.; Wright Muelas, M.; Day, P. J.; Lundberg, E.; Kell, D. B.

10.1101/155697 — systems biology — Posted on 2017-06-26

322 Molecular analysis of the midbrain dopaminergic niche during neurogenesis

Toledo, E. M.; La Manno, G.; Rivetti di Val Cervo, P.; Gyllborg, D.; Islam, S.; Villaescusa, C.; Linnarsson, S.; Arenas, E.

10.1101/155846 — systems biology — Posted on 2017-06-26

323 Imaging seminiferous tubules - a 9.4T MRI mouse model

Herigstad, M.; Granados-Aparici, S.; Pacey, A.; Paley, M.; Reynolds, S.

10.1101/155762 — physiology — Posted on 2017-06-26

324 Regulation of somatosensory mechanotransduction by Annexin A6

Raouf, R.; Lolignier, S.; Sexton, J. E.; Millet, Q.; Santana-Varela, S.; Biller, A.; Fuller, A. M.; Pereira, V.; Choudhary, J.; Collins, M.; Moss, S. E.; Tordo, J.; Linden, M.; Wood, J. N.

10.1101/155812 — neuroscience — Posted on 2017-06-26

325 Metagenomics reveals niche partitioning within the phototrophic zone of a microbial mat

Lee, J. Z.; Everroad, R. C.; Karaoz, U.; Detweiler, A. M.; Pett-Ridge, J.; Weber, P. K.; Prufert-Bebout, L.; Bebout, B. M.

10.1101/151704 — microbiology — Posted on 2017-06-26

326 A Bayesian Framework for Multiple Trait Colocalization from Summary Association Statistics

Giambartolomei, C.; Zhenli Liu, J.; Zhang, W.; Hauberg, M.; Shi, H.; Boocock, J.; Pickrell, J.; Jaffe, A. E.; - CommonMind Consortium, ; Pasaniuc, B.; Roussos, P.

10.1101/155481 — genomics — Posted on 2017-06-26

327 Mitochondrial DNA heteroplasmy is shared between human liver lobes

Wachsmuth, M.; Huebner, A.; Schroeder, R.; Li, M.; Eis-Huebinger, A. M.; Madea, B.; Stoneking, M.

10.1101/155796 — genetics — Posted on 2017-06-26

328 A zebrafish model of developmental joint dysplasia: Manipulating the larval mechanical environment to drive the malformation and recovery of joint shape

Roddy, K. A.; Skinner, R. E. H.; Brunt, L. H.; Kague, E.; Cross, S.; Rayfield, E. J.; Hammond, C. L.

10.1101/155911 — developmental biology — Posted on 2017-06-26

329 Biphasic growth dynamics during Caulobacter crescentus division

Banerjee, S.; Lo, K.; Daddysman, M. K.; Selewa, A.; Kuntz, T.; Dinner, A. R.; Scherer, N. F.

10.1101/047589 — microbiology — Posted on 2017-06-26

330 Resting heart rate rapid reduction by moderate exercise evolutionarily encoded

Pavlik, G.; Bakacs, E.; Csajagi, E.; Bakacs, T.; Noe, J.; Kirschner, R.

10.1101/155663 — physiology — Posted on 2017-06-26

331 Wakefulness state modulates conscious access: Suppression of auditory detection in the transition to sleep

Noreika, V.; Canales-Johnson, A.; Harrison, W. J.; Johnson, A.; Arnatkeviciute, A.; Koh, J.; Chennu, S.; Bekinschtein, T. A.

10.1101/155705 — neuroscience — Posted on 2017-06-26

332 Nuclease escape elements protect messenger RNA against cleavage by multiple viral endonucleases

Muller, M.; Glaunsinger, B. A.

10.1101/155457 — molecular biology — Posted on 2017-06-26

333 Worldwide genetic variation of the IGHV and TRBV immune receptor gene families in humans

Luo, S.; Yu, J. A.; Li, H.; Song, Y. S.

10.1101/155440 — genomics — Posted on 2017-06-26

334 High-Resolution Maps of Mouse Reference Populations

Simecek, P.; Forejt, J.; Williams, R. W.; Shiroishi, T.; Takada, T.; Lu, L.; Johnson, T. E.; Bennett, B.; Deschepper, C. F.; Scott-Boyer, M.-P.; Churchill, G. A.; de Villena, F. P.-M.

10.1101/155507 — genetics — Posted on 2017-06-26

335 Molecular characterization of latent GDF8 reveals mechanisms of activation

Walker, R. G.; McCoy, J. C.; Czepnik, M.; Mills, M. J.; Hagg, A.; Walton, K. L.; Cotton, T.; Hyvonen, M.; Lee, R. T.; Gregorevic, P.; Harrison, C. A.; Thompson, T.

10.1101/155614 — biochemistry — Posted on 2017-06-26

336 Tonic Inhibition is Abolished in GABAA Receptor γ2R43Q Knock-in Mice with Absence Epilepsy and Febrile Seizures.

Mangan, K. P.; Potter, W. B.; Nelson, A. B.; Petrou, S.; Johnson, S. M.; Roopra, A.; Cirelli, C.; Jones, M. V.

10.1101/155556 — neuroscience — Posted on 2017-06-26

337 Chromatin accessibility dynamics of myogenesis at single cell resolution

Pliner, H.; Packer, J.; McFaline-Figueroa, J.; Cusanovich, D.; Daza, R.; Srivatsan, S.; Qiu, X.; Jackson, D.; Minkina, A.; Adey, A.; Steemers, F.; Shendure, J.; Trapnell, C.

10.1101/155473 — genomics — Posted on 2017-06-26

338 CLAPO syndrome: Identification of somatic activating PIK3CA mutations and delineation of the natural history and phenotype

Rodriguez-Laguna, L.; Ibanez, K.; Gordo, G.; Garcia-Minaur, S.; Santos-Simarro, F.; Agra, N.; Vallespin, E.; Fernandez-Montano, V. E.; Martin-Arenas, R.; del Pozo, A.; Gonzalez-Pecellin, H.; Mena, R.; Rueda-Arenas, I.; Gomez, M. V.; Villaverde, C.; Bustamante, A.; Ayuso, C.; Ruiz-Perez, V. L.; Nevado, J.; Lapunzina, P.; Lopez-Gutierrez, J. C.; Martinez-Glez, V.

10.1101/154591 — genetics — Posted on 2017-06-26

339 A compendium of co-regulated protein complexes in breast cancer reveals collateral loss events

Ryan, C. J.; Kennedy, S.; Bajrami, I.; Matallanas, D.; Lord, C. J.

10.1101/155333 — cancer biology — Posted on 2017-06-26

340 Combining Semantic Similarity and GO Enrichment for Computation of Functional Similarity

Liu, W.; Liu, J.; Rajapakse, J. C.

10.1101/155689 — bioinformatics — Posted on 2017-06-26

341 A trapped double bond-photoisomerization intermediate in a bacterial photoreceptor

Xu, X.; Höppner, A.; Zhao, K.-H.; Gärtner, W.

10.1101/155374 — biophysics — Posted on 2017-06-25

342 Distinct contributions of three GABAergic interneuron populations to a mouse model of Rett Syndrome.

Mossner, J.; Batista-Brito, R.; Pant, R.; Cardin, J.

10.1101/155382 — neuroscience — Posted on 2017-06-25

343 Flexible control of speed of cortical dynamics

Wang, J.; Narain, D.; Hosseini, E.; Jazayeri, M.

10.1101/155390 — neuroscience — Posted on 2017-06-25

344 The independent influences of age and education on functional brain networks and cognition in healthy older adults

Perry, A.; Wen, W.; Kochan, N.; Thalamuthu, A.; Sachdev, P. S.; Breakspear, M.

10.1101/154898 — neuroscience — Posted on 2017-06-25

345 Systematic identification of novel regulatory interactions controlling biofilm formation in the bacterium Escherichia coli

Amores, G. R.; de las Heras, A.; Medeiros, A. S.; Elfick, A.; Silva-Rocha, R.

10.1101/155432 — microbiology — Posted on 2017-06-25

346 PARP mediated chromatin unfolding is coupled to long-range enhancer activation

Benabdallah, N. S.; Williamson, I.; Illingworth, R. S.; Boyle, S.; Grimes, G. R.; Therizols, P.; Bickmore, W.

10.1101/155325 — genomics — Posted on 2017-06-25

347 Genomic evidence of globally widespread admixture from polar bears into brown bears during the last ice age

Cahill, J. A.; Heintzman, P. D.; Harris, K.; Teasdale, M.; Kapp, J.; Rodrigues Soares, A. E.; Stirling, I.; Bradley, D.; Edwards, C. J.; Kisleika, A. A.; Malev, A. V.; Monaghan, N.; Green, R. E.; Shapiro, B.

10.1101/154773 — evolutionary biology — Posted on 2017-06-25

348 Molecular evolution, diversity and adaptation of H7N9 influenza A viruses in China

Lu, J.; Raghwani, J.; Wu, J.; Pryce, R.; Bowden, T. A.; Theze, J.; Huang, S.; Song, Y.; Zou, L.; Liang, L.; Bai, R.; Jin, Y.; Zhou, P.; Kang, M.; Yi, L.; Pybus, O. G.; Ke, C.

10.1101/155218 — evolutionary biology — Posted on 2017-06-25

349 Speciation as a sieve for ancestral polymorphism

Guerrero, R.; Hahn, M. W.

10.1101/155176 — evolutionary biology — Posted on 2017-06-25

350 Positively Selected Enhancer Elements Endow Tumor Cells with MetastaticCompetence

Morrow, J. J.; Bayles, I.; Funnell, A.; Miller, T.; Saiakhova, A.; Lizardo, M.; Bartels, C.; Kapteijn, M.; Hung, S.; Mendoza, A.; Chee, D.; Myers, J.; Allen, F.; Gambarotti, M.; Righi, A.; DiFeo, A.; Rubin, B.; Huang, A.; Meltzer, P.; Helman, L.; Picci, P.; Versteeg, H.; Stamatoyannopoulos, J.; Khanna, C.; Scacheri, P.

10.1101/155416 — cancer biology — Posted on 2017-06-25

351 Mapping the drivers of within-host pathogen evolution using massive data sets

Palmer, D. S.; Turner, I.; Fidler, S.; Frater, J.; Goulder, P.; Goedhals, D.; Huang, K.-H. G.; Oxenius, A.; Phillips, R.; Shapiro, R.; van Vuuren, C.; McLean, A. R.; McVean, G.

10.1101/155242 — genetics — Posted on 2017-06-25

352 Epidermal stem cells self-renew upon neighboring differentiation

Mesa, K. R.; Kawaguchi, K.; Gonzalez, D. G.; Cockburn, K.; Boucher, J.; Xin, T.; Klein, A. M.; Greco, V.

10.1101/155408 — cell biology — Posted on 2017-06-25

353 Not All Experimental Questions Are Created Equal: Accelerating Biological Data to Knowledge Transformation (BD2K) via Science Informatics, Active Learning and Artificial Intelligence

Kasif, S.; Letovsky, S.; Roberts, R. J.; Steffen, M.

10.1101/155150 — bioinformatics — Posted on 2017-06-25

354 Evaluating Metagenome Assembly on a Simple Defined Community with Many Strain Variants

Awad, S.; Irber, L.; Brown, C. T.

10.1101/155358 — bioinformatics — Posted on 2017-06-25

355 Buffering Agent Induced Lactose Content Increases via Growth Hormone-Mediated Activation of Gluconeogenesis in Lactating Goats

Li, L.; He, M.; Liu, Y.; Zhang, Y.

10.1101/155291 — biochemistry — Posted on 2017-06-25

356 Linearly changing stress environment causes cellular growth phenotype

Li, G.; Kesler, B. K.; Thiemicke, A.; Rogers, D. C.; Neuert, G.

10.1101/155267 — systems biology — Posted on 2017-06-25

357 Learning Edge Rewiring in EMT from Single Cell Data

Krishnaswamy, S.; Zivanovic, N.; Sharma, R.; Pe'er, D.; Bodenmiller, B.

10.1101/155028 — systems biology — Posted on 2017-06-25

358 Effects of LSD on music-evoked brain activity

Kaelen, M.; Lorenz, R.; Barrett, F. S.; Roseman, L.; Orban, C.; Santos-Ribeiro, A.; Wall, M. B.; Feilding, A.; Nutt, D.; Muthukumaraswamy, S.; Carhart-Harris, R.; Leech, R.

10.1101/153031 — neuroscience — Posted on 2017-06-25

359 Synaptic homeostasis at the Drosophila neuromuscular junction is a reversible signaling process that is sensitive to high temperature

Yeates, C. J.; Frank, C. A.

10.1101/154930 — neuroscience — Posted on 2017-06-25

360 Morphological And Transcriptomic Evidence For Ammonium Induction Of Sexual Reproduction In Thalassiosira pseudonana And Other Centric Diatoms

Moore, E. R.; Bullington, B. S.; Weisberg, A. J.; Jiang, Y.; Chang, J.; Halsey, K.

10.1101/144667 — microbiology — Posted on 2017-06-25

361 TCR-peptide contact profile determines immunogenicity in pathogen/tumor-derived MHC-I epitopes

Ogishi, M.; Yotsuyanagi, H.

10.1101/155317 — immunology — Posted on 2017-06-25

362 Constitutive Immune Activity Promotes Tumorigenesis in Drosophila Intestinal Progenitor Cells.

Petkau, K.; Ferguson, M.; Guntermann, S.; Foley, E.

10.1101/085597 — immunology — Posted on 2017-06-25

363 Ecological Network Metrics: Opportunities For Synthesis

Lau, M. K.; Borrett, S. R.; Baiser, B.; Gotelli, N.; Ellison, A. M.

10.1101/125781 — ecology — Posted on 2017-06-25

364 Synthetic lethality between the cohesin subunits STAG1 and STAG2 in diverse cancer contexts

van der Lelij, P.; Lieb, S.; Jude, J.; Wutz, G.; Santos, C. P.; Falkenberg, K.; Schlattl, A.; Ban, J.; Schwentner, R.; Hoffmann, T.; Kovar, H.; Real, F. X.; Waldman, T.; Pearson, M.; Kraut, N.; Peters, J.-M.; Zuber, J.; Petronczki, M. P.

10.1101/155309 — cancer biology — Posted on 2017-06-25

365 Binding Thermodynamics and Kinetics Calculations Using Chemical Host and Guest: A Comprehensive Picture of Molecular Recognition

Tang, Z.; Chang, C.-e.

10.1101/155275 — biophysics — Posted on 2017-06-25

366 Adsorption and conformation of lysozyme and α-lactalbumin at water-octane interface

Cheung, D.

10.1101/155341 — biophysics — Posted on 2017-06-25

367 Natural Genetic Variation Shapes Root System Responses to Phytohormones in Arabidopsis

Ristova, D.; Metesch, K.; Busch, W.

10.1101/155184 — plant biology — Posted on 2017-06-24

368 An improved experimental model of cystic hydatid disease in liver resembling natural infection route with stable growing dynamics and immune reaction

Zhang, R.; Chen, X.; Wen, H.

10.1101/155168 — pathology — Posted on 2017-06-24

369 A new genus of horse from Pleistocene North America

Heintzman, P. D.; Zazula, G. D.; MacPhee, R. D.; Scott, E.; Cahill, J. A.; McHorse, B. K.; Kapp, J. D.; Stiller, M.; Wooller, M. J.; Orlando, L.; Southon, J. R.; Froese, D. G.; Shapiro, B.

10.1101/154963 — paleontology — Posted on 2017-06-24

370 A cerebellar mechanism for learning prior distributions of time intervals

Narain, D.; Jazayeri, M.

10.1101/155226 — neuroscience — Posted on 2017-06-24

371 Spatiotemporal organization of whole-body muscle activity during upright reaching movements in various directions: modularity or not modularity?

Hilt, P. M.; Delis, I.; Pozzo, T.; Berret, B.

10.1101/155085 — neuroscience — Posted on 2017-06-24

372 Whole genome sequencing-based detection of antimicrobial resistance and virulence in non-typhoidal Salmonella enterica isolated from wildlife

Thomas, M.; Fenske, G. J.; Ghimire, S.; Welsh, R.; Ramachandran, A.; Scaria, J.

10.1101/155192 — microbiology — Posted on 2017-06-24

373 High-quality genome assemblies uncover caste-specific long non-coding RNAs in ants

Shields, E. J.; Bonasio, R.

10.1101/155119 — genomics — Posted on 2017-06-24

374 The Genetic Epidemiology of Developmental Dysplasia of the Hip: A Genome-Wide Association Study Harnessing National Clinical Audit Data

Hatzikotoulas, K.; Roposch, A.; Shah, K.; Clark, M.; Bratherton, S.; Limbani, V.; Steinberg, J.; Zengini, E.; Warsame, K.; Ratnayake, M.; Tselepi, M.; Schwartzentruber, J.; Loughlin, J.; Eastwood, D.; Zeggini, E.; Wilkinson, J. M.

10.1101/154013 — genetics — Posted on 2017-06-24

375 A dementia-associated risk variant near TMEM106B alters chromatin architecture and gene expression

Gallagher, M.; Posavi, M.; Huang, P.; Unger, T.; Berlyand, Y.; Gruenewald, A.; Chesi, A.; Manduchi, E.; Wells, A.; Grant, S.; Blobel, G.; Brown, C.; Chen-Plotkin, A.

10.1101/154989 — genetics — Posted on 2017-06-24

376 Xolik: finding cross-linked peptides with maximum paired scores in linear time

Dai, J.; Jiang, W.; Yu, F.; Yu, W.

10.1101/155069 — bioinformatics — Posted on 2017-06-24

377 A pipeline for interrogating and engineering single-subunit oligosaccharyltransferases

Jaroentomeechai, T.; Zheng, X.; Hershewe, J.; Stark, J. C.; Jewett, M. C.; DeLisa, M. P.

10.1101/155101 — synthetic biology — Posted on 2017-06-24

378 Input-specific NMDAR-dependent potentiation of dendritic GABAergic inhibition

Chiu, C. Q.; Martenson, J. S.; Yamazaki, M.; Natsume, R.; Sakimura, K.; Tomita, S.; Tavalin, S. J.; Higley, M. J.

10.1101/155077 — neuroscience — Posted on 2017-06-24

379 Resident Macrophages are Locally Programmed for Silent Clearance of Apoptotic Cells

Roberts, A. W.; Lee, B. L.; Deguine, J.; John, S.; Shlomchik, M.; Barton, G. M.

10.1101/155010 — immunology — Posted on 2017-06-24

380 Parallel evolution of two clades of a major Atlantic endemic Vibrio parahaemolyticus pathogen lineage by independent acquisition of related pathogenicity islands

Xu, F.; Gonzalez-Escalona, N.; Drees, K. P.; Sebra, R. P.; Cooper, V. S.; Jones, S. H.; Whistler, C. A.

10.1101/155234 — evolutionary biology — Posted on 2017-06-24

381 mRNA detection in budding yeast with single fluorophores

Wadsworth, G.; Parikh, R.; Choy, J.; Kim, H.

10.1101/155143 — genetics — Posted on 2017-06-24

382 SWELL1 is a glucose sensor required for β-cell excitability and insulin secretion

Kang, C.; Gunasekar, S. K.; Mishra, A.; Xie, L.; Zhang, Y.; Pai, S.; Gao, Y.; Norris, A. W.; Stephens, S. B.; Sah, R.

10.1101/155093 — cell biology — Posted on 2017-06-24

383 Multi-omic mitoprotease profiling defines a role for Oct1p in coenzyme Q production

Veling, M.; Reidenbach, A.; Freiberger, E.; Kwiecien, N.; Hutchins, P.; Drahnak, M.; Jochem, A.; Ulbrich, A.; Rush, M.; Coon, J.; Pagliarini, D.

10.1101/155044 — biochemistry — Posted on 2017-06-24

384 Computational approaches for discovery of mutational signatures in cancer

Baez-Ortega, A.; Gori, K.

10.1101/154716 — bioinformatics — Posted on 2017-06-24

385 Discriminative aversive learning and amygdala responsivity is enhanced in mice with reduced serotonin transporter activity

Lima, J.; Sharp, T.; Taylor, A. M.; Bannerman, D. M.; Mchugh, S. B.

10.1101/154690 — neuroscience — Posted on 2017-06-23

386 Neurodegeneration-associated mutant TREM2 proteins abortively cycle between the ER and ER-Golgi intermediate compartment

Sirkis, D. W.; Aparicio, R. E.; Schekman, R.

10.1101/154997 — cell biology — Posted on 2017-06-23

387 Dopamine neuron dependent behaviors mediated by glutamate cotransmission

Mingote, S.; Chuhma, N.; Kalmbach, A.; Thomsen, G. M.; Wang, Y.; Mihali, A.; Sferrazza, C.; Zucker-Scharff, I.; Siena, A.-C.; Welch, M. G.; Lizardi-Ortiz, J.; Sulzer, D.; Moore, H.; Gaisler-Salomon, I.; Rayport, S.

10.1101/154864 — neuroscience — Posted on 2017-06-23

388 Olfactory and vomeronasal innervation of the olfactory bulbs are not essential for GnRH-1 neuronal migration to the brain.

Taroc, E. Z. M.; Prasad, A.; Lin, J. M.; Forni, P.

10.1101/154922 — neuroscience — Posted on 2017-06-23

389 Histone demethylation and c-MYC activation enhance translational capacity in response to amino acid restriction

Cheng, C.; Su, T.; Morselli, M.; Kurdistani, S.

10.1101/154419 — molecular biology — Posted on 2017-06-23

390 Estimating phenotypic polygenicity and causal effect size variance from GWAS summary statistics while accounting for inflation due to cryptic relatedness

Holland, D.; Fan, C.-C.; Frei, O.; Shadrin, A. A.; Smeland, O. B.; Sundar, V. S.; - ENIGMA, ; Andreassen, O. A.; Dale, A. M.

10.1101/133132 — genomics — Posted on 2017-06-23

391 Hippo signaling restricts cells in the second heart field that differentiate into Islet-1-positive atrial cardiomyocytes

Fukui, H.; Miyazaki, T.; Ishikawa, H.; Nakajima, H.; Mochizuki, N.

10.1101/154765 — developmental biology — Posted on 2017-06-23

392 Dynamic balance between vesicle transport and microtubule growth enables neurite growth

Yadaw, A. S.; Siddiq, M.; Rabinovich, V.; Iyengar, R.; Hansen, J.

10.1101/153569 — systems biology — Posted on 2017-06-23

393 Magnetic Entropy as a Gating Mechanism for Magnetogenetic Ion Channels

Duret, G.; Polali, S.; Anderson, E. D.; Bell, A. M.; Tzouanas, C. N.; Avants, B. W.; Robinson, J. T.

10.1101/148379 — neuroscience — Posted on 2017-06-23

394 Corticocortical signaling drives activity in a downstream area rapidly and scalably

Li, X.; Yamawaki, N.; Barrett, J. M.; Kording, K. P.; Shepherd, G. M. G.

10.1101/154914 — neuroscience — Posted on 2017-06-23

395 Quantifying the importance of guessing, decision noise, and variable precision in explaining behavioral variability in visual perception

Shen, S.; Ma, W. J.

10.1101/153650 — neuroscience — Posted on 2017-06-23

396 Preferential targeting of lateral entorhinal inputs onto newly integrated granule cells

Woods, N. I.; Vaaga, C. E.; Chatzi, C.; Adelson, J. D.; Collie, M. F.; Perederiy, J. V.; Tovar, K. R.; Westbrook, G. L.

10.1101/153767 — neuroscience — Posted on 2017-06-23

397 Bottled aqua incognita: Microbiota assembly and dissolved organic matter diversity in natural mineral waters

Lesaulnier, C. C.; Herbold, C. W.; Pelikan, C.; Berry, D.; Gerard, C.; Le Coz, X.; Gagnot, S.; Niggemann, J.; Dittmar, T.; Singer, G. A.; Loy, A.

10.1101/154732 — microbiology — Posted on 2017-06-23

398 Dual functions of Discoidin domain receptor coordinate cell-matrix adhesion and collective polarity in migratory cardiopharyngeal progenitors

Bernadskaya, Y. Y.; Brahmbhatt, S.; Gline, S. E.; Wang, W.; Christiaen, L.

10.1101/154880 — developmental biology — Posted on 2017-06-23

399 Distinct Solubility and Cytotoxicity Regimes of Paclitaxel-Loaded Cationic Liposomes at Low and High Drug Content Revealed by Kinetic Phase Behavior and Cancer Cell Viability Studies

Steffes, V. M.; Murali, M. M.; Park, Y.; Fletcher, B. J.; Ewert, K.; Safinya, C. R.

10.1101/154948 — biophysics — Posted on 2017-06-23

400 Ludicrous Speed Linear Mixed Models for Genome-Wide Association Studies

Kadie, C. M.; Heckerman, D.

10.1101/154682 — bioinformatics — Posted on 2017-06-23

401 Twelve Elements of Visualization and Analysis for Tertiary and Quaternary Structure of Biological Molecules

Youkharibache, P.

10.1101/153528 — bioinformatics — Posted on 2017-06-23

402 In silico identification of non-coding RNAs in Halobacterium salinarum NRC-1 model archeon organism

Fonseca, M. A. S.; Vencio, R. Z. N.

10.1101/152439 — bioinformatics — Posted on 2017-06-23

403 Structure of the human pro-myostatin precursor and determinants of growth factor latency

Cotton, T. R.; Fischer, G.; Wang, X.; McCoy, J. C.; Czepnik, M.; Thompson, T. B.; Hyvonen, M.

10.1101/153403 — biochemistry — Posted on 2017-06-23

404 Tolloid cleavage activates latent GDF8 by priming the pro-complex for dissociation

Le, V. Q.; Iacob, R. E.; Tian, Y.; McConaughy, W.; Su, Y.; Zhao, B.; Engen, J. R.; Pirruccello-Straub, M.; Springer, T. A.

10.1101/154823 — biochemistry — Posted on 2017-06-23

405 Analysis of Copy Number Loss of the ErbB4 Receptor Tyrosine Kinase in Glioblastoma

Jones, D. C.; Scanteianu, A.; DiStefano, M.; Bouhaddou, M.; Birtwistle, M. R.

10.1101/154815 — systems biology — Posted on 2017-06-23

406 Early survival and delayed death of developmentally-born dentate gyrus neurons

Cahill, S. P.; Yu, R. Q.; Green, D. C.; Todorova, E. V.; Snyder, J. S.

10.1101/092957 — neuroscience — Posted on 2017-06-23

407 mRNA processing in mutant zebrafish lines generated by chemical and CRISPR-mediated mutagenesis produces potentially functional transcripts

Anderson, J. L.; Mulligan, T. S.; Shen, M.-C.; Wang, H.; Scahill, C. M.; Du, S. J.; Busch-Nentwich, E. M.; Farber, S. A.

10.1101/154856 — molecular biology — Posted on 2017-06-23

408 Draft genome of the Reindeer (Rangifer tarandus)

Li, Z.; Lin, Z.; Chen, L.; Ba, H.; Yang, Y.; Wang, K.; Wang, W.; Qiu, Q.; Li, G.

10.1101/154724 — genomics — Posted on 2017-06-23

409 The Molecular Genetic Basis of Herbivory between Butterflies and their Host-Plants

Nallu, S.; Hill, J.; Don, K.; Sahagun, C.; Zhang, W.; Meslin, C.; Snell-Rood, E.; Clark, N. L.; Morehouse, N. I.; Bergelson, J.; Wheat, C. W.; Kronforst, M. R.

10.1101/154799 — genomics — Posted on 2017-06-23

410 Patterns of conservation and diversification in the fungal polarization network

Diepeveen, E. T.; Pourquie, V.; Gehrmann, T.; Abeel, T.; Laan, L.

10.1101/154641 — evolutionary biology — Posted on 2017-06-23

411 The cavity method for community ecology

Barbier, M.; Arnoldi, J.-F.

10.1101/147728 — ecology — Posted on 2017-06-23

412 Spectrin is a mechanoresponsive protein shaping the architecture of intercellular invasion

Duan, R.; Kim, J. H.; Shilagardi, K.; Schiffhauer, E.; Son, S.; Lee, D.; Li, S.; Thomas, C.; Luo, T.; Fletcher, D. A.; Robinson, D. N.; Chen, E. H.

10.1101/154831 — cell biology — Posted on 2017-06-23

413 Rhodosporidium toruloides: A new platform organism for conversion of lignocellulose into terpene biofuels and bioproducts

Yaegashi, J.; Kirby, J.; Ito, M.; Sun, J.; Dutta, T.; Mirsiaghi, M.; Sundstrom, E.; Rodriguez, A.; Baidoo, E.; Tanjore, D.; Pray, T.; Sale, K.; Singh, S.; Keasling, J.; Simmons, B.; Singer, S.; Magnuson, J.; Arkin, A.; Skerker, J.; Gladden, J.

10.1101/154872 — bioengineering — Posted on 2017-06-23

414 Response to Editas: Unexpected mutations after CRISPR-Cas9 editing in vivo

Schaefer, K. A.; Wu, W.-H.; Colgan, D. F.; Tsang, S. H.; Bassuk, A. G.; Mahajan, V. B.

10.1101/154450 — bioengineering — Posted on 2017-06-23

415 Reflective imaging improves resolution, speed, andcollection efficiency in light sheet microscopy

Wu, Y.; Kumar, A.; Smith, C.; Ardiel, E.; Chandris, P.; Christensen, R.; Rey-Suarez, I.; Guo, M.; Vishwasrao, H.; Chen, J.; Tang, J.; Upadhyaya, A.; La Riviere, P.; Shroff, H.

10.1101/154807 — bioengineering — Posted on 2017-06-23

416 Prediction of peptide binding to MHC Class I proteins in the age of deep learning

Bhattacharya, R.; Tokheim, C.; Sivakumar, A.; Guthrie, V. B.; Anagnostou, V.; Velculescu, V. E.; Karchin, R.

10.1101/154757 — bioinformatics — Posted on 2017-06-23

417 Type III CRISPR-Cas systems generate cyclic oligoadenylate second messengers to activate Csm6 RNases

Niewoehner, O.; Garcia-Doval, C.; Rostol, J. T.; Berk, C.; Schwede, F.; Bigler, L.; Hall, J.; Marraffini, L.; Jinek, M.

10.1101/153262 — biochemistry — Posted on 2017-06-23

418 Predicting single-cell transcription dynamics even when the central limit theorem fails

Munsky, B.; Li, G.; Fox, Z.; Shepherd, D. P.; Neuert, G.

10.1101/154401 — systems biology — Posted on 2017-06-23

419 ATP sensing in living plant cells reveals tissue gradients and stress dynamics of energy physiology

De Col, V.; Fuchs, P.; Nietzel, T.; Elsaesser, M.; Voon, C. P.; Candeo, A.; Seeliger, I.; Fricker, M.; Grefen, C.; Moller, I. M.; Bassi, A.; Lim, B. L.; Zancani, M.; Meyer, A.; Costa, A.; Wagner, S.; Schwarzlaender, M.

10.1101/153163 — plant biology — Posted on 2017-06-23

420 A convergent depression vulnerability pathway encoded by emergent spatiotemporal dynamics

Hultman, R.; Ulrich, K.; Sachs, B.; Blount, C.; Carlson, D.; Ndubuizu, N.; Bagot, R.; Parise, E.; Vu, M.-A.; Wang, J.; Silva, A.; Deisseroth, K.; Mague, S.; Caron, M.; Nestler, E.; Carin, L.; Dzirasa, K.

10.1101/154708 — neuroscience — Posted on 2017-06-23

421 Interplay between mitochondria and diet mediates pathogen and stress resistance in C. elegans

Revtovich, A.; Lee, R.; Kirienko, N.

10.1101/154393 — molecular biology — Posted on 2017-06-23

422 Genome-wide population diversity in Hymenoscyphus fraxineus points to an eastern Russian origin of European Ash dieback.

Sonstebo, J. H.; Vivian-Smith, A.; Adamson, K.; Drenkhan, R.; Solheim, H.; Hietala, A.

10.1101/154492 — genomics — Posted on 2017-06-23

423 Data Resource Profile: Generation Scotland Electronic Health Record

Kerr, S. M.; Campbell, A.; Marten, J.; Vitart, V.; McIntosh, A. M.; Porteous, D. J.; Hayward, C.

10.1101/154609 — genetics — Posted on 2017-06-23

424 Boosting Felsenstein Phylogenetic Bootstrap

Lemoine, F.; Domelevo Entfellner, J.-B.; Wilkinson, E.; De Oliveira, T.; Gascuel, O.

10.1101/154542 — evolutionary biology — Posted on 2017-06-23

425 Aerobiosis Decreases the Genomic GC content in Prokaryotes by Guanine Oxidation

Aslam, S.; Lan, X.-R.; Niu, D.-K.

10.1101/154534 — evolutionary biology — Posted on 2017-06-23

426 Mammal extinctions and the increasing isolation of humans on the tree of life

Pavoine, S.; Bonsall, M.; Davies, J.; Masi, S.

10.1101/154526 — ecology — Posted on 2017-06-23

427 Insm1a regulates motor neuron development in zebrafish

Gong, J.; Wang, X.; Zhu, C.; Dong, X.; Zhang, Q.; Wang, X.; Duan, X.; Qian, F.; Gao, Y.; Zhao, Q.; Chai, R.; Liu, D.

10.1101/154518 — developmental biology — Posted on 2017-06-23

428 TRIM9-dependent ubiquitination of DCC constrains kinase signaling, exocytosis, and axon branching

Plooster, M.; Menon, S.; Winkle, C. C.; Urbina, F. L.; Monkiewicz, C.; Phend, K. D.; Weinberg, R. J.; Gupton, S. L.

10.1101/154666 — cell biology — Posted on 2017-06-23

429 Vasomotor Symptoms Monitoring with a Commercial Activity Tracking Watch

Ricke, D. O.

10.1101/154658 — bioinformatics — Posted on 2017-06-23

430 Estimates of Introgression as a Function of Pairwise Distances

Pfeifer, B.; Kapan, D. D.

10.1101/154377 — evolutionary biology — Posted on 2017-06-23

431 Mitochondrial genome of Plasmodium vivax/simium detected in an endemic region for malaria in the Atlantic Forest of Espirito Santo state, Brazil: do mosquitoes, simians and humans harbor the same parasite?

Buery, J. C.; Rodrigues, P. T.; Natal, L.; Salla, L. C.; Loss, A. C.; Vicente, C. R.; Rezende, H. R.; Duarte, A. M. R. d. C.; Fux, B.; Malafronte, R. d. S.; Falqueto, A.; Cerutti Junior, C.

10.1101/152926 — epidemiology — Posted on 2017-06-23

432 A National Estimate of the Health and Cost Burden of Escherichia coli Bacteraemia in the Hospital Setting: The Importance of Antibiotic Resistance.

Naylor, N. R.; Pouwels, K. B.; Hope, R.; Green, N.; Henderson, K. L.; Knight, G. M.; Atun, R.; Robotham, J. V.; Deeny, S.

10.1101/153775 — epidemiology — Posted on 2017-06-23

433 Sonic hedgehog is required for neural crest-dependent patterning of the intrinsic tongue musculature

Okuhara, S.; Birjandi, A. A.; Al-Lami, H. A.; Sagai, T.; Amano, T.; Shiroishi, T.; Liu, K. J.; Cobourne, M.; Iseki, S.

10.1101/154443 — developmental biology — Posted on 2017-06-23

434 Welfare of zebra finches used in research

Yamahachi, H.; Zai, A. T.; Tachibana, R. O.; Stepien, A. E.; Rodrigues, D. I.; Cave-Lopez, S.; Narula, G.; Lee, J.; Huang, Z.; Hörster, H.; Düring, D.; Hahnloser, R. H. R.

10.1101/154567 — animal behavior and cognition — Posted on 2017-06-23

435 Diffusion MRI of white matter microstructure development in childhood and adolescence: Methods, challenges and progress

Tamnes, C. K.; Roalf, D. R.; Goddings, A.-L.; Lebel, C.

10.1101/153924 — neuroscience — Posted on 2017-06-23

436 Distinct representations of planned reach trajectories in human premotor and posterior parietal cortex

Pilacinski, A.; Lindner, A.

10.1101/154385 — neuroscience — Posted on 2017-06-23

437 Multivariate Heteroscedasticity Models for Functional Brain Connectivity

Seiler, C.; Holmes, S.

10.1101/154468 — neuroscience — Posted on 2017-06-23

438 Head-on replication-transcription collisions lead to formation of life threatening R-loops

Lang, K. S.; Hall, A. N.; Merrikh, C. N.; Ragheb, M.; Merrikh, H.

10.1101/154427 — molecular biology — Posted on 2017-06-23

439 Rapid whole genome amplification and sequencing of low cell numbers in a bacteraemia model

Anscombe, C.; Misra, R.; Gharbia, S.

10.1101/153965 — microbiology — Posted on 2017-06-23

440 Trade-off between intra- and interannual scales in the evolution of aggressiveness in a local plant pathogen population

Suffert, F.; Goyeau, H.; Sache, I.; Carpentier, F.; Gelisse, S.; Morais, D.; Delestre, G.

10.1101/151068 — epidemiology — Posted on 2017-06-23

441 International risk of yellow fever spread from the ongoing outbreak in Brazil

Dorigatti, I.; Hamlet, A.; Aguas, R.; Cattarino, L.; Cori, A.; Donnelly, C. A.; Garske, T.; Imai, N.; Ferguson, N. M.

10.1101/152280 — epidemiology — Posted on 2017-06-23

442 The decline of malaria in Vietnam, 1991-2014

Goldlust, S. M.; Thuan, P. D.; Giang, D. D. H.; Thang, N. D.; Thwaites, G. E.; Farrar, J.; Thanh, N. V.; Nguyen, T. D.; Grenfell, B. T.; Boni, M. F.; Hien, T. T.

10.1101/151456 — epidemiology — Posted on 2017-06-23

443 Spatiotemporal relationships defining the adaptive gating of the bacterial mechanosensitive channel MscS

Cetiner, U.; Sukharev, S.

10.1101/154435 — biophysics — Posted on 2017-06-23

444 Coupling of replisome movement with nucleosome dynamics can contribute to the parent-daughter information transfer

Bameta, T.; Das, D.; Padinhateeri, R.

10.1101/154559 — biophysics — Posted on 2017-06-23

445 A correlation analysis framework for localization-based super-resolution microscopy

Schnitzbauer, J.; Wang, Y.; Bakalar, M.; Chen, B.; Nuwal, T.; Zhao, S.; Huang, B.

10.1101/125005 — bioengineering — Posted on 2017-06-23

446 Computational Investigation of O2 Diffusion Through an Intra-molecular Tunnel in AlkB; Influence of Polarization on O2 Transport

Torabifard, H.; Cisneros, G. A.

10.1101/154674 — biochemistry — Posted on 2017-06-23

447 On The Advantages Of Evolutionary Passivity In Fluctuating Environments: Could Sex Be The Preadaptation For The Stability-Based Sorting?

Flegr, J.; Ponizil, P.

10.1101/139030 — evolutionary biology — Posted on 2017-06-23

448 Associations Of Prenatal And Postnatal Growth With Insulin-Like Growth Factor-I Levels In Pre-Adolescence

Arathimos, R.; Macdonald-Wallis, C.; Bull, C. J.; Holly, J. M. P.; Oken, E.; Kramer, M. S.; Gusina, N.; Bogdanovich, N.; Vilchuck, K.; Patel, R.; Martin, R. M.; Tilling, K.

10.1101/144493 — epidemiology — Posted on 2017-06-23

449 Maternal BMI at the start of pregnancy and offspring epigenome-wide DNA methylation: Findings from the Pregnancy and Childhood Epigenetics (PACE) consortium.

Sharp, G. C.; Salas, L. A.; Monnereau, C.; Allard, C.; Yousefi, P.; Everson, T.; - The PACE Consortium, ; London, S. J.; Felix, J. F.; Relton, C. L.

10.1101/125492 — epidemiology — Posted on 2017-06-23

450 Correction of copy number induced false positives in CRISPR screens

de Weck, A.; Golji, J.; Jones, M. D.; Korn, J. M.; Billy, E.; McDonald, E. R.; Schmelzle, T.; Bitter, H.; Kauffmann, A.

10.1101/151985 — bioinformatics — Posted on 2017-06-23

451 Slowing ageing using drug synergy in C. elegans

Dessale, T.; Batchu, K. C.; Barardo, D.; Ng, L. F.; Lam, V. Y. M.; Wenk, M. R.; Tolwinski, N. S.; Gruber, J.

10.1101/153205 — biochemistry — Posted on 2017-06-23

452 Modulation of Body Mass Composition using Vestibular Nerve Stimulation.

McGeoch, P. D.; McKeown, J.; Ramachandran, V. S.

10.1101/087692 — neuroscience — Posted on 2017-06-23

453 A Theta Rhythm In Awake Macaque V1 And V4 And Its Attentional Modulation

Spyropoulos, G.; Bosman, C. A.; Fries, P.

10.1101/117804 — neuroscience — Posted on 2017-06-23

454 Histone demethylation and c-MYC activation enhance translational capacity in response to amino acid restriction

Cheng, C.; Su, T.; Morselli, M.; Kurdistani, S.

10.1101/154419 — molecular biology — Posted on 2017-06-23

455 Estimating genetic kin relationships in prehistoric populations

Monroy Kuhn, J. M.; Jakobsson, M.; Günther, T.

10.1101/100297 — genetics — Posted on 2017-06-23

456 Increasingly inbred and fragmented populations of Plasmodium vivax with declining transmission

Waltmann, A.; Koepfli, C.; Tessier, N.; Karl, S.; Darcy, A.; Wini, L.; Harrison, G. L. A.; Barnadas, C.; Jennison, C.; Karunajeewa, H.; Boyd, S.; Whittaker, M.; Kazura, J.; Bahlo, M.; Mueller, I.; Barry, A. E.

10.1101/100610 — epidemiology — Posted on 2017-06-23

457 wingless is a positive regulator of eyespot color patterns in Bicyclus anynana butterflies

Ozsu, N.; Chan, Q. Y.; Chen, B.; Das Gupta, M.; Monteiro, A.

10.1101/154500 — developmental biology — Posted on 2017-06-23

458 The structural basis for regulation of the nucleo-cytoplasmic distribution of Bag6 by TRC35

Mock, J.-Y.; Xu, Y.; Ye, Y.; Clemons, W.

10.1101/154351 — biochemistry — Posted on 2017-06-23

459 Structural brain development: a review of methodological approaches and best practices

Vijayakumar, N.; Mills, K. L.; Alexander-Bloch, A.; Tamnes, C. K.; Whittle, S.

10.1101/153718 — scientific communication and education — Posted on 2017-06-23

460 Elevated ozone reduces photosynthetic carbon gain by accelerating leaf senescence of inbred and hybrid maize in a genotype-specific manner

Yendrek, C. R.; Erice, G.; Montes, C. M.; Tomaz, T.; Sorgini, C. A.; Brown, P. J.; McIntyre, L. M.; Leakey, A. D. B.; Ainsworth, E. A.

10.1101/154104 — plant biology — Posted on 2017-06-23

461 Fluid administration rate for uncontrolled intraabdominal hemorrhage in pigs

Yanala, U. R.; Johanning, J. M.; Pipinos, I. I.; High, R. R.; Larsen, G.; Velander, W. H.; Carlson, M.

10.1101/154203 — physiology — Posted on 2017-06-23

462 Functional selectivity for face processing in the temporal voice area of early deaf individuals

Benetti, S.; van Ackeren, M. J.; Rabini, G.; Zonca, J.; Foa, V.; Baruffaldi, F.; Rezk, M.; Pavani, F.; Rossion, B.; Collignon, O.

10.1101/154138 — neuroscience — Posted on 2017-06-23

463 Genetic context and proliferation determine contrasting patterns of copy number amplification and loss for 5S and 45S ribosomal DNA arrays in cancer

Wang, M.; Lemos, B.

10.1101/154120 — genomics — Posted on 2017-06-23

464 Natural selection shaped the rise and fall of passenger pigeon genomic diversity

Murray, G. G. R.; Soares, A. E. R.; Novak, B. J.; Schaefer, N. K.; Cahill, J. A.; Baker, A. J.; Demboski, J. R.; Doll, A.; Da Fonseca, R. R.; Fulton, T. L.; Gilbert, M. T. P.; Heintzman, P. D.; Letts, B.; McInstosh, G.; O'Connell, B. L.; Peck, M.; Pipes, M.-L.; Rice, E. S.; Santos, K. M.; Sohrweide, A. G.; Vohr, S. H.; Corbett-Detig, R. B.; Green, R. E.; Shapiro, B.

10.1101/154294 — genomics — Posted on 2017-06-23

465 Recruitment of CRISPR-Cas systems by Tn7-like transposons

Peters, J. E.; Makarova, K. S.; Shmakov, S.; Koonin, E. V.

10.1101/154229 — evolutionary biology — Posted on 2017-06-23

466 RNA interference pathways display high rates of adaptive protein evolution across multiple invertebrates

Palmer, W. H.; Hadfield, J.; Obbard, D. J.

10.1101/154153 — evolutionary biology — Posted on 2017-06-23

467 Soil community assembly varies across body sizes in a tropical forest

Zinger, L.; Taberlet, P.; Schimann, H.; Bonin, A.; Boyer, F.; De Barba, M.; Gaucher, P.; Gielly, L.; Giguet-Covex, C.; Iribar, A.; Rejou-Mechain, M.; Raye, G.; Rioux, D.; Schilling, V.; Tymen, B.; Viers, J.; Zouiten, C.; Thuiller, W.; Coissac, E.; Chave, J.

10.1101/154278 — ecology — Posted on 2017-06-23

468 The chromatin factor Gon4l regulates embryonic axis extension by promoting mediolateral cell polarity and notochord boundary formation through negative regulation of cell adhesion

Williams, M. L. K.; Sawada, A.; Budine, T.; Yin, C.; Gontarz, P.; Solnica-Krezel, L.

10.1101/154310 — developmental biology — Posted on 2017-06-23

469 Homeodomain interacting protein kinase promotes tumorigenesis and metastatic cell behavior

Blaquiere, J. A.; Wong, K. K. L.; Kinsey, S. D.; Wu, J.; Verheyen, E. M.

10.1101/154344 — cancer biology — Posted on 2017-06-23

470 EMHP: An accurate automated hole masking algorithm for single-particle cryo-EM image processing

Berndsen, Z.; Bowman, C.; Jang, H.; Ward, A. B.

10.1101/154211 — bioinformatics — Posted on 2017-06-23

471 A model-free method for measuring dimerization free energies of CLC-ec1 in lipid bilayers

Chadda, R.; Cliff, L.; Brimberry, M.; Robertson, J. L.

10.1101/154286 — biochemistry — Posted on 2017-06-23

472 Genetic evidences for the impact of anthropogenic factors on honey bee diversity

Kukrer, M.; Kence, M.; Kence, A.

10.1101/154195 — zoology — Posted on 2017-06-23

473 Intestinal epithelial and intraepithelial T cell crosstalk mediates a dynamic response to infection

Hoytema van Konijnenburg, D. P.; Reis, B. S.; Pedicord, V.; Farache, J.; Victora, G. D.; Mucida, D.

10.1101/154237 — immunology — Posted on 2017-06-23

474 A genetic investigation of sex bias in the prevalence of attention deficit hyperactivity disorder

Martin, J.; Walters, R. K.; Demontis, D.; Mattheisen, M.; Lee, S. H.; Robinson, E.; Brikell, I.; Ghirardi, L.; Larsson, H.; Lichtenstein, P.; Eriksson, N.; - 23andMe Research Team, ; - Psychiatric Genomics Consortium: ADHD Subgroup, ; - iPSYCH-Broad ADHD Workgroup, ; Werge, T.; Bo Mortensen, P.; Giortz Pedersen, M.; Mors, O.; Nordentoft, M.; Hougaard, D. M.; Bybjerg-Grauholm, J.; Wray, N.; Franke, B.; Faraone, S. V.; O'Donovan, M. C.; Thapar, A.; Borglum, A. D.; Neale, B. M.

10.1101/154088 — genetics — Posted on 2017-06-23

475 Genome-wide analysis reveals distinct genetic mechanisms of diet-dependent lifespan and healthspan in D. melanogaster

Wilson, K. A.; Nelson, C. S.; Beck, J. N.; Brem, R. B.; Kapahi, P.

10.1101/153791 — genetics — Posted on 2017-06-23

476 Red wood-ant nests are traps for fault-related CH4 micro-seepage

Berberich, G.; Ellison, A.; Hartmann, J.; Berberich, M.; Grumpe, A.; Becker, A.; Wöhler, C.

10.1101/154245 — ecology — Posted on 2017-06-23

477 Endocytosis caused by liquid-liquid phase separation of proteins

Bergeron-Sandoval, L.-P.; Heris, H. K.; Hendricks, A. G.; Ehrlicher, A. J.; Francois, P.; Pappu, R. V.; Michnick, S. W.

10.1101/145664 — cell biology — Posted on 2017-06-23

478 Quantum Calculations Of A Large Section Of The Voltage Sensing Domain Of The Kv1.2 Channel Show That Proton Transfer, Not S4 Motion, Provides The Gating Current

Kariev, A. M.; Green, M. E.

10.1101/154070 — biophysics — Posted on 2017-06-23

479 Twelve Elements of Visualization and Analysis for Tertiary and Quaternary Structure of Biological Molecules

Youkharibache, P.

10.1101/153528 — bioinformatics — Posted on 2017-06-23

480 A Deep Learning Approach to Estimate Collagenous Tissue Nonlinear Anisotropic Stress-Strain Responses from Microscopy Images

Liang, L.; Liu, M.; Sun, W.

10.1101/154161 — bioengineering — Posted on 2017-06-23

481 Structure and misfolding of the flexible tripartite coiled coil domain of glaucoma-associated myocilin

Hill, S. E.; Nguyen, E.; Donegan, R. K.; Hazel, A.; Gumbart, J. C.; Lieberman, R. L.

10.1101/154112 — biochemistry — Posted on 2017-06-23

482 Informatics for Cancer Immunotherapy

Hammerbacher, J.; Snyder Charen, A.

10.1101/152264 — bioinformatics — Posted on 2017-06-22

483 Advanced Lesion Symptom Mapping Analyses And Implementation As BCBtoolkit

Foulon, C.; Cerliani, L.; Kinkingnehun, S.; Levy, R.; Rosso, C.; Urbanski, M.; Volle, E.; Thiebaut de Schotten, M.

10.1101/133314 — neuroscience — Posted on 2017-06-22

484 Stratified Linkage Disequilibrium Score Regression reveals enrichment of eQTL effects on complex traits is not tissue specific

Ip, H.; Jansen, R.; Abdellaoui, A.; Bartels, M.; - UK Brain Expression Consortium, ; Boomsma, D. I.; Nivard, M. G.

10.1101/107482 — genomics — Posted on 2017-06-22

485 A practical guide to CRISPR/Cas9 genome editing in Lepidoptera

Zhang, L.; Reed, R.

10.1101/130344 — genetics — Posted on 2017-06-22

486 TreeTime: maximum likelihood phylodynamic analysis

Sagulenko, P.; Puller, V.; Neher, R.

10.1101/153494 — evolutionary biology — Posted on 2017-06-22

487 Pan-genome and phylogeny of Bacillus cereus sensu lato

Bazinet, A. L.

10.1101/119420 — evolutionary biology — Posted on 2017-06-22

488 Egr1 deficiency induces browning of inguinal subcutaneous white adipose tissue in mice

Milet, C.; Bleher, M.; Allbright, K.; Orgeur, M.; Coulpier, F.; Duprez, D.; Havis, E.

10.1101/150003 — developmental biology — Posted on 2017-06-22

489 Epigenetic resetting of human pluripotency

Guo, G.; von Meyenn, F.; Rostovskaya, M.; Clarke, J.; Dietmann, S.; Baker, D.; Sahakyan, A.; Myers, S.; Bertone, P.; Reik, W.; Plath, K.; Smith, A.

10.1101/146712 — developmental biology — Posted on 2017-06-22

490 Online, Interactive Tutorials Provide Effective Instruction in Science Process Skills

Kramer, M.; Olson, D.; Walker, J. D.

10.1101/153015 — scientific communication and education — Posted on 2017-06-22

491 Refractoriness accounts for variable spike burst responses in somatosensory cortex

Telenczuk, B.; Kempter, R.; Curio, G.; Destexhe, A.

10.1101/098210 — neuroscience — Posted on 2017-06-22

492 Coral Symbiodinium community composition across the Belize Mesoamerican Barrier Reef System is driven by host species and environmental variability

Baumann, J.; Davies, S. W.; Aichelman, H. E.; Castillo, K. D.

10.1101/154179 — molecular biology — Posted on 2017-06-22

493 Transcriptome-wide analysis of roles for tRNA modifications in translational regulation

Chou, H.-J.; Donnar, E.; Gustafsson, H. T.; Garber, M.; Rando, O.

10.1101/154096 — molecular biology — Posted on 2017-06-22

494 Mechanism-based sirtuin enzyme activation

Guan, X.; Upadhyay, A.; Munshi, S.; Chakrabarti, R.

10.1101/027243 — biochemistry — Posted on 2017-06-22

495 Drug treatment efficiency depends on the initial state of activation in nonlinear pathways

Doldan-Martelli, V. L.; Miguez Gomez, D.

10.1101/153981 — systems biology — Posted on 2017-06-22

496 Bacteria facilitate viral co-infection of mammalian cells and promote genetic recombination

Erickson, A. K.; Jesudhasan, P. R.; Mayer, M. J.; Narbad, A.; Winter, S. E.; Pfeiffer, J. K.

10.1101/154021 — microbiology — Posted on 2017-06-22

497 c-di-GMP-linked phenotypes are modulated by the interaction between a diguanylate cyclase and a polar hub protein

Nicastro, G. G.; Kaihami, G. H.; Pulschen, A. A.; Hernandez-Montelongo, J.; Boechat, A. L.; de Oliveira Pereira, T.; Stefanello, E.; Colepicolo, P.; Bordi, C.; Baldini, R.

10.1101/154005 — microbiology — Posted on 2017-06-22

498 UFBoot2: Improving the Ultrafast Bootstrap Approximation

Hoang, D. T.; Chernomor, O.; von Haeseler, A.; Minh, B. Q.; Le, V. S.

10.1101/153916 — evolutionary biology — Posted on 2017-06-22

499 Fractional Field Theory Approach to Protein Folding Dynamics

Nasrolahpour, H.

10.1101/153999 — biophysics — Posted on 2017-06-22

500 Correction of copy number induced false positives in CRISPR screens

de Weck, A.; Golji, J.; Jones, M. D.; Korn, J. M.; Billy, E.; McDonald, E. R.; Schmelzle, T.; Bitter, H.; Kauffmann, A.

10.1101/151985 — bioinformatics — Posted on 2017-06-22

501 Positional effects revealed in Illumina Methylation Array and the impact on analysis

Jiao, C.; Zhang, C.; Dai, R.; Xia, Y.; Wang, K.; Giase, G.; Chen, C.; Liu, C.

10.1101/153858 — bioinformatics — Posted on 2017-06-22

502 Scaffolding imagination: A role for medial frontal cortex in the expression of off-task thought

Sormaz, M.; Wang, H.-T.; Karapanagiotidis, T.; Murphy, C.; Hymers, M.; Margulies, D.; Jefferies, E.; Smallwood, J.

10.1101/153973 — animal behavior and cognition — Posted on 2017-06-22

503 Dual learning mechanisms drive adaptive inhibitory control

Dunovan, K.; Verstynen, T.

10.1101/153676 — neuroscience — Posted on 2017-06-22

504 Quantifying the importance of guessing, decision noise, and variable precision in explaining behavioral variability in visual perception

Shen, S.; Ma, W. J.

10.1101/153650 — neuroscience — Posted on 2017-06-22

505 150 million years of sustained increase in pterosaur flight efficiency

Venditti, C.; Baker, J.; Benton, M. J.; Meade, A.; Humphries, S.

10.1101/153957 — evolutionary biology — Posted on 2017-06-22

506 Bridging multilocus species delimitation and DNA barcoding through target enrichment of UCEs: A case study with Mexican highland frogs

Zarza, E.; Connors, E. M.; Maley, J. M.; Tsai, W. L. E.; Heimes, P.; Kaplan, M.; McCormack, J. E.

10.1101/153601 — evolutionary biology — Posted on 2017-06-22

507 Evolutionary proteomics uncovers ciliary signaling components

Sigg, M. A.; Menchen, T.; Johnson, J.; Lee, C.; Choksi, S. P.; Garcia, G.; Busengdal, H.; Dougherty, G.; Pennekamp, P.; Werner, C.; Rentzsch, F.; Krogan, N.; Wallingford, J. B.; Omran, H.; Reiter, J. F.

10.1101/153437 — evolutionary biology — Posted on 2017-06-22

508 Ectopic activation of the Spindle Assembly Checkpoint reveals its biochemical design and physiological operation

Chen, C.; Whitney, I. P.; Banerjee, A.; Sekhri, P.; Kern, D.; Fontan, A.; Tyson, J. J.; Cheeseman, I. M.; Joglekar, A. P.

10.1101/154054 — cell biology — Posted on 2017-06-22

509 Mapping-free variant calling using haplotype reconstruction from k-mer frequencies

Audano, P.; Ravishankar, S.; Vannberg, F.

10.1101/153619 — bioinformatics — Posted on 2017-06-22

510 Direct in vivo mapping of functional suppressors in glioblastoma genome

Chow, R.; Guzman, C.; Wang, G.; Schmidt, F.; Youngblood, M.; Ye, L.; Errami, Y.; Dong, M.; Martinez, M.; Zhang, S.; Renauer, P.; Bilguvar, K.; Gunel, M.; Sharp, P.; Zhang, F.; Platt, R.; Chen, S.

10.1101/153460 — systems biology — Posted on 2017-06-22

511 Resting-State fMRI Dynamics and Null Models: Perspectives, Sampling Variability, and Simulations

Miller, R. L.; Adali, T.; Levin-Schwartz, Y.; Calhoun, V. D.

10.1101/153411 — neuroscience — Posted on 2017-06-22

512 Genome reconstruction and characterisation of extensively drug-resistant bacterial pathogens through direct metagenomic sequencing of human faeces

Mu, A.; Kwong, J. C.; Isles, N. S.; Goncalves da Silva, A.; Schultz, M. B.; Ballard, S. A.; Carter, G. P.; Williamson, D. A.; Seemann, T.; Stinear, T. P.; Howden, B. P.

10.1101/153874 — genomics — Posted on 2017-06-22

513 The grayling genome reveals selection on gene expression regulation after whole genome duplication

Varadharajan, S.; Sandve, S. R.; Torresen, O. K.; Lien, S.; Vollestad, L. A.; Jentoft, S.; Nederbragt, A. J.; Jakobsen, K. S.

10.1101/153270 — genomics — Posted on 2017-06-22

514 Fitness effects of cis-regulatory variants in the Saccharomyces cerevisiae TDH3 promoter

Duveau, F.; Toubiana, W.; Wittkopp, P. J.

10.1101/154039 — genetics — Posted on 2017-06-22

515 Variants at the ADAMTS13, BGALT5, SSBP2 and TKT Loci are associated with Post-term birth.

Schierding, W.; Antony, J.; Karhunen, V.; Vaarasmaki, M.; Franks, S.; Elliot, P.; Kajantie, E.; Sebert, S.; Blakemore, A.; Horsfield, J. A.; Jarvelin, M.-R.; O'Sullivan, J.; Cutfield, W. S.

10.1101/153833 — genetics — Posted on 2017-06-22

516 Microevolutionary processes underlying macroevolutionary patterns of electric signal diversity in mormyrid fish

Gallant, J. R.; Sperling, J.; Cheng, C.; Arnegard, M. E.; Carlson, B.; Hopkins, C.

10.1101/154047 — evolutionary biology — Posted on 2017-06-22

517 Genomic variations in paired normal controls for lung adenocarcinomas

Qu, L.-W.; Zhou, B.; Wang, G.-Z.; Chen, Y.; Zhou, G.-B.

10.1101/153825 — cancer biology — Posted on 2017-06-22

518 zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs

Parekh, S.; Ziegenhain, C.; Vieth, B.; Enard, W.; Hellmann, I.

10.1101/153940 — bioinformatics — Posted on 2017-06-22

519 CD-HIT-OTU-MiSeq, an Improved Approach for Clustering and Analyzing Paired End MiSeq 16S rRNA Sequences

Li, W.; Chang, Y.

10.1101/153783 — bioinformatics — Posted on 2017-06-22

520 Pooled AAV-CRISPR Screen with Targeted Amplicon Sequencing

Wang, G.; Chow, R.; Ye, L.; Guzman, C.; Dai, X.; Dong, M.; Zhang, F.; Sharp, P.; Platt, R.; Chen, S.

10.1101/153643 — systems biology — Posted on 2017-06-22

521 MIP-MAP: High-Throughput Mapping of Caenorhabditis elegans Temperature Sensitive Mutants via Molecular Inversion Probes

Mok, C.; Au, V.; Thompson, O.; Edgley, M.; Gevirtzman, L.; Yochem, J.; Lowry, J.; Memar, N.; Wallenfang, M.; Rasoloson, D.; Bowerman, B.; Schnabel, R.; Seydoux, G.; Moerman, D. G.; Waterston, R. H.

10.1101/150862 — genomics — Posted on 2017-06-22

522 PARP inhibition causes premature loss of cohesion in cancer cells

Kukolj, E.; Kaufmann, T.; Dick, A. E.; Zeillinger, R.; Gerlich, D. W.; Slade, D.

10.1101/153932 — cell biology — Posted on 2017-06-22

523 Distinct gut microbiome patterns associate with consensus molecular subtypes of colorectal cancer

Purcell, R. V.; Visnovska, M.; Biggs, P. J.; Schmeier, S.; Frizelle, F. A.

10.1101/153809 — cancer biology — Posted on 2017-06-22

524 Low-complexity domains adhere by reversible amyloid-like interactions between kinked β-sheets

Hughes, M. P.; Sawaya, M. R.; Goldschmidt, L.; Rodriguez, J. A.; Cascio, D.; Gonen, T.; Eisenberg, D. S.

10.1101/153817 — biochemistry — Posted on 2017-06-22

525 Isolated from input: Evidence of default mode network support for perceptually-decoupled and conceptually-guided cognition

Murphy, C.; Jefferies, E.; Rueschemeyer, S.-A.; Sormaz, M.; Wang, H.-t.; Margulies, D.; Smallwood, J.

10.1101/150466 — neuroscience — Posted on 2017-06-22

526 Exclusive functional subnetworks of intracortical projection neurons in primary visual cortex

Kim, M.-H.; Znamenskiy, P.; Iacaruso, M. F.; Mrsic-Flogel, T. D.

10.1101/153247 — neuroscience — Posted on 2017-06-22

527 A set of Columbia-0-specific single nucleotide polymorphism markers for the genetic analysis of natural variation in Arabidopsis thaliana

Lutz, U.; Schwechheimer, C.

10.1101/153197 — genetics — Posted on 2017-06-22

528 Neural Networks for Efficient Bayesian Decoding of Natural Images from Retinal Neurons

Parthasarathy, N.; Batty, E.; Falcon, W.; Rutten, T.; Rajpal, M.; Chichilnisky, E. J.; Paninski, L.

10.1101/153759 — neuroscience — Posted on 2017-06-22

529 Analysis of hippocampal transcriptomic responses to technical and biological perturbations

Harris, R. M.; Kao, H.-Y.; Alarcon, J. M.; Hofmann, H. A.; Fenton, A.

10.1101/153585 — neuroscience — Posted on 2017-06-22

530 A quantitative systems pharmacology analysis of KRAS G12C covalent inhibitors

Stites, E. C.; Shaw, A. S.

10.1101/153635 — systems biology — Posted on 2017-06-21

531 Preferential targeting of lateral entorhinal inputs onto newly integrated granule cells

Woods, N. I.; Vaaga, C. E.; Chatzi, C.; Adelson, J. D.; Collie, M. F.; Perederiy, J. V.; Tovar, K. R.; Westbrook, G. L.

10.1101/153767 — neuroscience — Posted on 2017-06-21

532 A novel mathematical method for disclosing oscillations ingene transcription: a comparative study

Antoulas, A. C.; Zhu, B.; Zhang, Q.; York, B.; O'Malley, B. W.; Dacso, C.

10.1101/151720 — cell biology — Posted on 2017-06-21

533 The Decision Decoding ToolBOX (DDTBOX) - A multivariate pattern analysis toolbox for event-related potentials

Bode, S.; Feuerriegel, D.; Bennett, D.; Alday, P. M.

10.1101/153189 — neuroscience — Posted on 2017-06-21

534 Representational dynamics of task context and its influence on visual object processing

Hebart, M. N.; Bankson, B. B.; Harel, A.; Baker, C. I.; Cichy, R. M.

10.1101/153684 — neuroscience — Posted on 2017-06-21

535 Alpha power reflects suppression of Pavlovian bias during social reinforcement learning

Thompson, J. C.; Westwater, M. L.

10.1101/153668 — neuroscience — Posted on 2017-06-21

536 Modeling the Mechanism of CLN025Beta-Hairpin Formation

McKiernan, K. A.; Husic, B. E.; Pande, V. S.

10.1101/145185 — biophysics — Posted on 2017-06-21

537 Dynamic balance between vesicle transport and microtubule growth enables neurite growth

Yadaw, A. S.; Siddiq, M.; Rabinovich, V.; Iyengar, R.; Hansen, J.

10.1101/153569 — systems biology — Posted on 2017-06-21

538 A computational panel of pathological RAS mutants with implications for personalized medicine and genetic medicine

Kenney, C.; Stites, E.

10.1101/153726 — pathology — Posted on 2017-06-21

539 Global Efficiency of Retinal Networks shows Robustness and Degenerate States

Miguel Signorelli, C.

10.1101/153742 — neuroscience — Posted on 2017-06-21

540 Habits are negatively regulated by HDAC3 in the dorsal striatum

Malvaez, M.; Greenfield, V. Y.; Matheos, D. P.; Angelillis, N.; Murphy, M. D.; Kennedy, P. J.; Wood, M. A.; Wassum, K.

10.1101/153734 — neuroscience — Posted on 2017-06-21

541 Viral apoptosis evasion via the MAPK pathway by use of a host long noncoding RNA

Barichievy, S.; Naidoo, J.; Boulle, M.; Scholefield, J.; Parihar, S. P.; Coussens, A. K.; Brombacher, F.; Sigal, A.; Mhlanga, M. M.

10.1101/153130 — molecular biology — Posted on 2017-06-21

542 FUCCI tracking shows that Neurog3 levels vary with cell-cycle phase in endocrine-biased pancreatic progenitors

Bechard, M. E.; Bankaitis, E. D.; Ustione, A.; Piston, D.; Magnuson, M. A.; Wright, C. V. E.

10.1101/153700 — cell biology — Posted on 2017-06-21

543 Analysis of RAS as a tumor suppressor

Kenney, C.; Stites, E.

10.1101/153692 — cancer biology — Posted on 2017-06-21

544 Varying water deficit stress (WDS) tolerance in grain amaranths involves multifactorial shifts in WDS-related responses

Gonzalez-Rodriguez, A. T.; Cisneros-Hernandez, I.; Martinez-Gallardo, N. A.; Mellado-Mojica, E.; Lopez-Perez, M.; Ramirez-Chavez, E.; Molina-Torres, J.; Delano-Frier, J. P.

10.1101/153577 — plant biology — Posted on 2017-06-21

545 Deep Residual Network Reveals a Nested Hierarchy of Distributed Cortical Representation for Visual Categorization

Wen, H.; Shi, J.; Chen, W.; Liu, Z.

10.1101/151142 — neuroscience — Posted on 2017-06-21

546 Faster than the brain’s speed of light: Retinocortical interactions differ in high frequency activity when processing darks and lights

Westner, B. U.; Dalal, S. S.

10.1101/153551 — neuroscience — Posted on 2017-06-21

547 Replication Defective Viral Genomes Exploit A Cellular Pro-Survival Mechanism To Establish Viral Persistence

Xu, J.; Sun, Y.; Li, Y.; Ruthel, G.; Weiss, S. R.; Raj, A.; Beiting, D.; Lopez, C. B.

10.1101/120766 — microbiology — Posted on 2017-06-21

548 The experimental design and data interpretation in “Unexpected mutations after CRISPR–Cas9 editing in vivo” by Schaefer et al. are insufficient to support the conclusions drawn by the authors

Wilson, C. J.; Fennell, T.; Bothmer, A.; Maeder, M. L.; Reyon, D.; Cotta-Ramusino, C.; Fernandez, C. A.; Marco, E.; Barrera, L. A.; Jayaram, H.; Albright, C. F.; Cox, G. F.; Church, G. M.; Myer, V. E.

10.1101/153338 — genetics — Posted on 2017-06-21

549 Mapping in vivo genetic interactomics through Cpf1 crRNA array screening

Chow, R. D.; Wang, G.; Codina, A.; Ye, L.; Chen, S.

10.1101/153486 — genetics — Posted on 2017-06-21

550 Targeted dynein inhibition generates flagellar beating

Lin, J.; Nicastro, D.

10.1101/153254 — cell biology — Posted on 2017-06-21

551 Early And Late Components Of EEG Delay Activity Correlate Differently With Scene Working Memory Performance

Ellmore, T. M.; Ng, K.; Reichert, C. P.

10.1101/143461 — neuroscience — Posted on 2017-06-21

552 Lack of evidence for sex differences in higher cognitive function in macaques

Nagy, J. R. J.; Damatac, C. G.; Baxter, M. G.; Rudebeck, P. H.; Croxson, P. L.

10.1101/153593 — neuroscience — Posted on 2017-06-21

553 Metagenomic characterization of the effect of feed additives on the gut microbiome and antibiotic resistome of feedlot cattle

Thomas, M.; Webb, M.; Ghimire, S.; Blair, A.; Olson, K.; Fenske, G. J.; Fonder, A. T.; Christopher-Hennings, J.; Brake, D.; Scaria, J.

10.1101/153536 — microbiology — Posted on 2017-06-21

554 De novo draft assembly of the Botrylloides leachii genome provides further insight into tunicate evolution.

Blanchoud, S.; Rutherford, K.; Zondag, L.; Gemmell, N.; Wilson, M. J.

10.1101/152983 — genomics — Posted on 2017-06-21

555 Evaluating Strategies For Reversing CRISPR-Cas9 Gene Drives

Vella, M. R.; Gunning, C. E.; Lloyd, A. L.; Gould, F.

10.1101/144097 — evolutionary biology — Posted on 2017-06-21

556 TreeTime: maximum likelihood phylodynamic analysis

Sagulenko, P.; Puller, V.; Neher, R.

10.1101/153494 — evolutionary biology — Posted on 2017-06-21

557 Kin competition overrules spatial selection as a driver of range expansions

Van Petegem, K. H. P.; Moerman, F.; Dahirel, M.; Fronhofer, E. A.; Vandegehuchte, M.; Van Leeuwen, T.; Wybouw, N.; Stoks, R.; Bonte, D.

10.1101/150011 — ecology — Posted on 2017-06-21

558 WDR5 stabilizes actin architecture to promote multiciliated cell formation

Kulkarni, S. S.; Griffin, J. N.; Liem, K. F.; Khokha, M. K.

10.1101/153361 — developmental biology — Posted on 2017-06-21

559 LPP3 mediates self-generation of chemotactic LPA gradients by melanoma cells

Susanto, O.; Koh, Y.; Morrice, N.; Tumanov, S.; Thomason, P.; Neilson, M.; Tweedy, L.; Muinonen-Martin, A.; Kamphorst, J.; Mackay, G.; Insall, R. H.

10.1101/153510 — cancer biology — Posted on 2017-06-21

560 Decoding sequence-level information to predict membrane protein expression

Saladi, S. M.; Javed, N.; Müller, A.; Clemons, W. M.

10.1101/098673 — biophysics — Posted on 2017-06-21

561 A method to minimize condenser lens-induced hysteresis effects in a JEOL JEM-3200FSC microscope to enable stable cryoEM low-dose operations

de la Cruz, M. J.; Martynowycz, M.; Hattne, J.; Shi, D.; Gonen, T.

10.1101/153395 — biophysics — Posted on 2017-06-21

562 Molecular chaperones maximize the native state yield per unit time by driving substrates out of equilibrium

Chakrabarti, S.; Hyeon, C.; Ye, X.; Lorimer, G.; Thirumalai, D.

10.1101/153478 — biophysics — Posted on 2017-06-21

563 Natural variation in stochastic photoreceptor specification and color preference in Drosophila

Anderson, C.; Reiss, I.; Zhou, C.; Cho, A.; Siddiqi, H.; Mormann, B.; Avelis, C. M.; Bergland, A.; Roberts, E.; Taylor, J.; Vasiliauskas, D.; Johnston, R. J.

10.1101/153445 — developmental biology — Posted on 2017-06-21

564 Determining controllability of sepsis using genetic algorithms on a proxy agent-based model of systemic inflammation

Cockrell, C.; An, G.

10.1101/153080 — systems biology — Posted on 2017-06-21

565 Cyclic electron flow in Chlamydomonas reinhardtii

Nawrocki, W.; Bailleul, B.; Cardol, P.; Rappaport, F.; Wollman, F.-A.; Joliot, P.

10.1101/153288 — plant biology — Posted on 2017-06-21

566 Deriving C4 photosynthesis parameters by fitting intensive A/Ci curves

Zhou, H.; Akcay, E.; Helliker, B.

10.1101/153072 — plant biology — Posted on 2017-06-21

567 Identification of uterine pacemaker regions at the myometrial-placental interface

Lutton, E. J.; Lammers, W. J. E. P.; James, S.; van den Berg, H. A.; Blanks, A. M.

10.1101/152678 — physiology — Posted on 2017-06-21

568 Hippocampal Spike-Timing Correlations Lead to Hexagonal Grid Fields

Monsalve-Mercado, M. M.; Leibold, C.

10.1101/153379 — neuroscience — Posted on 2017-06-21

569 Low dimensional morphospace of topological motifs in human fMRI brain networks

Morgan, S. E.; Achard, S.; Termenon, M.; Bullmore, E. T.; Vertes, P. E.

10.1101/153320 — neuroscience — Posted on 2017-06-21

570 Targeting neuronal activity-regulated neuroligin-3 dependency for high-grade glioma therapy

Venkatesh, H. S.; Tam, L. T.; Woo, P. J.; Nagaraja, S.; Gillespe, S. M.; Lennon, J.; Ni, J.; Duveau, D. Y.; Morris, P. J.; Zhao, J. J.; Thomas, C. J.; Monje, M.

10.1101/153122 — neuroscience — Posted on 2017-06-21

571 Exclusive functional subnetworks of intracortical projection neurons in primary visual cortex

Kim, M.-H.; Znamenskiy, P.; Iacaruso, M. F.; Mrsic-Flogel, T. D.

10.1101/153247 — neuroscience — Posted on 2017-06-21

572 Characterising the short-term habituation of event-related evoked potentials

Mancini, F.; Pepe, A.; Di Stefano, G.; Mouraux, A.; Iannetti, G. D.

10.1101/153387 — neuroscience — Posted on 2017-06-21

573 Predator-secreted sulfolipids induce fear-like defense responses in C. elegans

Liu, Z.; Kariya, M. J.; Chute, C. D.; Pribadi, A. K.; Leinwand, S. G.; Tong, A.; Curran, K. P.; Bose, N.; Schroeder, F. C.; Srinivasan, J.; Chalasani, S.

10.1101/153056 — neuroscience — Posted on 2017-06-21

574 The Decision Decoding ToolBOX (DDTBOX) - A novel multivariate pattern analysis toolbox for event-related potentials

Bode, S.; Feuerriegel, D.; Bennett, D.; Alday, P. M.

10.1101/153189 — neuroscience — Posted on 2017-06-21

575 VipA N-terminal linker and VipB-VipB interaction modulate the contraction of Type VI secretion system sheath

Brackmann, M.; Wang, J.; Basler, M.

10.1101/152785 — microbiology — Posted on 2017-06-21

576 An integrative strategy to identify the entire protein coding potential of prokaryotic genomes by proteogenomics

Omasits, U.; Varadarajan, A. R.; Schmid, M.; Goetze, S.; Melidis, D.; Bourqui, M.; Nikolayeva, O.; Quebatte, M.; Patrignani, A.; Dehio, C.; Frey, J. E.; Robinson, M. D.; Wollscheid, B.; Ahrens, C. H.

10.1101/153213 — genomics — Posted on 2017-06-21

577 Transcriptome analysis of the quantitative distribution of the Cyrtotrachelus buqueti population in two cities in China

Luo, C.; Liu, A.; Long, W.; Liao, H.; Yang, Y.

10.1101/153148 — genomics — Posted on 2017-06-21

578 A set of Columbia-0-specific single nucleotide polymorphism markers for the genetic analysis of natural variation in Arabidopsis thaliana

Lutz, U.; Schwechheimer, C.

10.1101/153197 — genetics — Posted on 2017-06-21

579 The Centrosome Controls the Number and Spatial Distribution of Microtubules by Negatively Regulating Alternative MTOCs

Gavilan, M. P.; Gandolfo, P.; Balestra, F. R.; Arias, F.; Bornens, M.; Rios, R. M.

10.1101/153304 — cell biology — Posted on 2017-06-21

580 Behavioral decoding of Drosophila locomotionin a circular arena

Qiu, S.; Xiao, C.

10.1101/119966 — bioinformatics — Posted on 2017-06-21

581 Epigenome-Based Drug Repositioning in Acute Myeloid Leukemia

Brown, A. S.; Patel, C. J.

10.1101/152157 — bioinformatics — Posted on 2017-06-21

582 A Bayesian approach to multivariate and multilevel modelling with non-random missingness for hierarchical clinical proteomics data

Zeng, I. S.; Lumley, T.; Ruggiero, K.; Middleditch, M.

10.1101/153049 — bioinformatics — Posted on 2017-06-21

583 Construction and Operation of an Affordable Laboratory Photobioreactor System for Simultaneous Cultivation of up to 12 Independent 1 L Cyanobacterial Cultures

Clark, R. L.; McGinley, L. L.; Quevedo, D. F.; Root, T. W.; Pfleger, B. F.

10.1101/153023 — bioengineering — Posted on 2017-06-21

584 Slowing ageing using drug synergy in C. elegans

Dessale, T.; Batchu, K. C.; Barardo, D.; Ng, L. F.; Lam, V. Y. M.; Wenk, M. R.; Tolwinski, N. S.; Gruber, J.

10.1101/153205 — biochemistry — Posted on 2017-06-21

585 Live-cell mapping of organelle-associated RNAs via proximity biotinylation combined with protein-RNA crosslinking

Kaewsapsak, P.; Shechner, D. M.; Mallard, W.; Rinn, J. L.; Ting, A. Y.

10.1101/153098 — biochemistry — Posted on 2017-06-21

586 Second-generation method for analysis of chromatin binding using formaldehyde crosslinking kinetics

Zaidi, H.; Hoffman, E. A.; Shetty, S. J.; Bekiranov, S.; Auble, D. T.

10.1101/153353 — biochemistry — Posted on 2017-06-21

587 A conserved homo-dimerization interface in human IFIT1 provides insights into IFIT interactome assembly

Abbas, Y. M.; Martinez-Montero, S.; Cencic, R.; Pelletier, J.; Pawelek, P. D.; Damha, M. J.; Nagar, B.

10.1101/152850 — biochemistry — Posted on 2017-06-21

588 Metabolic Constraints And Quantitative Design Principles In Gene Expression During Adaption Of Yeast To Heat Shock

Pereira, T.; Vilaprinyo, E.; Belli, G.; Herrero, E.; Salvado, B.; Sorribas, A.; Altes, G.; Alves, R.

10.1101/143487 — systems biology — Posted on 2017-06-21

589 Silver fluoride as a treatment for the disease dental caries

Horst, J. A.; Seto, J.

10.1101/152207 — pharmacology and toxicology — Posted on 2017-06-21

590 Plasmids, Viruses, And Other Circular Elements In Rat Gut

Jorgensen, T. S.; Hansen, M. A.; Xu, Z.; Tabak, M. A.; Sorensen, S. J.; Hansen, L. H.

10.1101/143420 — microbiology — Posted on 2017-06-21

591 Positive interactions support complex networks

Losapio, G.; de la Cruz, M.; Escudero, A.; Schmid, B.; Schöb, C.

10.1101/118166 — ecology — Posted on 2017-06-21

592 A Site Specific Model And Analysis Of The Neutral Somatic Mutation Rate In Whole-Genome Cancer Data

Bertl, J.; Guo, Q.; Rasmussen, M. J.; Besenbacher, S.; Nielsen, M. M.; Hornshoej, H.; Pedersen, J. S.; Hobolth, A.

10.1101/122879 — bioinformatics — Posted on 2017-06-21

593 Homology-based hydrogen bond information improves crystallographic structures in the PDB

van Beusekom, B.; Touw, W. G.; Tatineni, M.; Somani, S.; Rajagopal, G.; Luo, J.; Gilliland, G. L.; Perrakis, A.; Joosten, R. P.

10.1101/147231 — biochemistry — Posted on 2017-06-21

594 Accessible, curated metagenomic data through ExperimentHub

Pasolli, E.; Schiffer, L.; Manghi, P.; Renson, A.; Obenchain, V.; Truong, D. T.; Beghini, F.; Malik, F.; Ramos, M.; Dowd, J. B.; Huttenhower, C.; Morgan, M.; Segata, N.; Waldron, L.

10.1101/103085 — bioinformatics — Posted on 2017-06-21

595 A high-throughput assay to identify robust inhibitors of dynamin GTPase activity

Mohanakrishnan, A.; Tran, T. V. M.; Kumar, M.; Chen, H.; Posner, B. A.; Schmid, S. L.

10.1101/153106 — biochemistry — Posted on 2017-06-21

596 The NDE1 genomic locus can affect treatment of psychiatric illness through gene expression changes related to MicroRNA-484

Bradshaw, N. J.; Ukkola-Vuoti, L.; Pankakoski, M.; Zheutlin, A. B.; Ortega-Alonso, A.; Torniainen-Holm, M.; Sinha, V.; Therman, S.; Paunio, T.; Suvisaari, J.; Lonnqvist, J.; Cannon, T. D.; Haukka, J.; Hennah, W.

10.1101/087007 — genetics — Posted on 2017-06-21

597 Cancer Genome Interpreter Annotates The Biological And Clinical Relevance Of Tumor Alterations

Tamborero, D.; Rubio-Perez, C.; Deu-Pons, J.; Schroeder, M. P.; Vivancos, A.; Rovira, A.; Tusquets, I.; Albanell, J.; Rodon, J.; Tabernero, J.; de Torres, C.; Dienstmann, R.; Gonzalez-Perez, A.; Lopez-Bigas, N.

10.1101/140475 — cancer biology — Posted on 2017-06-21

598 Developmental dynamics of cross-modality in mouse visual cortex

Hattori, R.; Hensch, T. K.

10.1101/150847 — neuroscience — Posted on 2017-06-21

599 Differential roles of sleep spindles and sleep slow oscillations in memory consolidation

Wei, Y.; Krishnan, G. P.; Komarov, M.; Bazhenov, M.

10.1101/153007 — neuroscience — Posted on 2017-06-21

600 Architecture and dynamics of overlapped RNA regulatory networks

Lapointe, C. P.; Preston, M. A.; Wilinski, D.; Saunders, H. A. J.; Campbell, Z. T.; Wickens, M.

10.1101/152991 — molecular biology — Posted on 2017-06-20

601 Evidence for "inter- and intraspecific horizontal genetic transfers" between anciently asexual bdelloid rotifers is explained by cross-contamination

Wilson, C. G.; Nowell, R. W.; Barraclough, T. G.

10.1101/150490 — evolutionary biology — Posted on 2017-06-20

602 How to improve parameter estimates in GLM-based fMRI data analysis: cross-validated Bayesian model averaging

Soch, J.; Meyer, A. P.; Haynes, J.-D.; Allefeld, C.

10.1101/095778 — neuroscience — Posted on 2017-06-20

603 Opposing spatial gradients of inhibition and neural activity in mouse olfactory cortex

Large, A. M.; Vogler, N. W.; Canto, M. B.; Schick, P.; Oswald, A.-M. M.

10.1101/152975 — neuroscience — Posted on 2017-06-20

604 An adder behavior in mammalian cells achieves size control by modulation of growth rate and cell cycle duration

Cadart, C.; Monnier, S.; Grilli, J.; Attia, R.; Terriac, E.; Baum, B.; Cosentino-Lagomarsino, M.; Piel, M.

10.1101/152728 — cell biology — Posted on 2017-06-20

605 Proximity labeling reveals an extensive steady-state stress granule interactome and insights to neurodegeneration

Markmiller, S.; Soltanieh, S.; Server, K.; Mak, R.; Jin, W.; Luo, E.; Krach, F.; Kankel, M. W.; Sen, A.; Bennett, E. J.; Lecuyer, E.; Yeo, G.

10.1101/152520 — cell biology — Posted on 2017-06-20

606 Unique genomic features and deeply-conserved functions of long non-coding RNAs in the Cancer LncRNA Census (CLC)

Carlevaro-Fita, J.; Lanzos Camaioni, A. A.; Feuerbach, L.; Hong, C.; Mas-Ponte, D.; - PCAWG Driver Identification Working Group 2-5-9-14, ; Guigo, R.; Pedersen, J. S.; Johnson, R.

10.1101/152769 — bioinformatics — Posted on 2017-06-20

607 A rapid and accurate approach for prediction of interactomes from co-elution data (PrInCE)

Stacey, R. G.; Skinnider, M. A.; Scott, N. E.; Foster, L. J.

10.1101/152355 — bioinformatics — Posted on 2017-06-20

608 Emergent properties in complex synthetic bacterial promoters

Monteiro, L. M. O.; Arruda, L. M.; Silva-Rocha, R.

10.1101/152934 — synthetic biology — Posted on 2017-06-20

609 A guide to robust statistical methods in neuroscience

Wilcox, R. R.; Rousselet, G. A.

10.1101/151811 — neuroscience — Posted on 2017-06-20

610 Sex-biased transcriptomic response of the reproductive axis to stress

Calisi, R.; Austin, S.; Lang, A. S.; MacManes, M. D.

10.1101/152801 — neuroscience — Posted on 2017-06-20

611 Striatal fast-spiking interneurons drive habitual behavior

O'Hare, J.; Li, H.; Kim, N.; Gaidis, E.; Ade, K.; Beck, J.; Yin, H.; Calakos, N.

10.1101/152918 — neuroscience — Posted on 2017-06-20

612 Control of recollection by slow gamma dominating medium gamma in hippocampus CA1

Dvorak, D.; Radwan, B.; Sparks, F. T.; Talbot, Z. N.; Fenton, A. A.

10.1101/152488 — neuroscience — Posted on 2017-06-20

613 Inferring single-trial neural population dynamics using sequential auto-encoders

Pandarinath, C.; O'Shea, D. J.; Collins, J.; Jozefowicz, R.; Stavisky, S. D.; Kao, J. C.; Trautmann, E. M.; Kaufman, M. T.; Ryu, S. I.; Hochberg, L. R.; Henderson, J. M.; Shenoy, K. V.; Abbott, L. F.; Sussillo, D.

10.1101/152884 — neuroscience — Posted on 2017-06-20

614 PfClpC Is An Essential Clp Chaperone Required For Plastid Integrity And Clp Protease Stability In Plasmodium falciparum

Florentin, A.; Cobb, D. W.; Fishburn, J. D.; Cipriano, M. J.; Kim, P. S.; Fierro, M. A.; Striepen, B.; Muralidharan, V.

10.1101/080408 — microbiology — Posted on 2017-06-20

615 Reference Quality Assembly of the 3.5 Gb genome of Capsicum annuum from a Single Linked-Read Library

Hulse-Kemp, A. M.; Maheshwari, S.; Stoffel, K.; Hill, T. A.; Jaffe, D.; Williams, S.; Weisenfeld, N.; Ramakrishnan, S.; Kumar, V.; Shah, P.; Schatz, M. C.; Church, D. M.; Van Deynze, A.

10.1101/152777 — genomics — Posted on 2017-06-20

616 Project MinE: study design and pilot analyses of a large-scale whole-genome sequencing study in amyotrophic lateral sclerosis

- Project MinE Consortium, ; Van Rheenen, W.; Pulit, S. L.; Dekker, A. M.; Al Khleifat, A.; Brands, W. J.; Iacoangeli, A.; Kenna, K. P.; Kavak, E.; Kooyman, M.; McLaughlin, R. L.; Middelkoop, B.; Moisse, M.; Schellevis, R. D.; Shatunov, A.; Sproviero, W.; Tazelaar, G. H.; Van der Spek, R. A.; Van Doormal, P. T.; Van Eijk, K. R.; Van Vugt, J.; Basak, A. N.; Glass, J. D.; Hardiman, O.; Hide, W.; Landers, J. E.; Mora, J. S.; Morrison, K. E.; Newhouse, S.; Robberecht, W.; Shaw, C. E.; Shaw, P. J.; Van Damme, P.; Van Es, M. A.; Al-Chalabi, A.; Van den Berg, L. H.; Veldink, J. H.

10.1101/152553 — genetics — Posted on 2017-06-20

617 The evolutionary history of Nebraska deer mice: local adaptation in the face of strong gene flow

Pfeifer, S. P.; Laurent, S.; Sousa, V. C.; Linnen, C. R.; Foll, M.; Excoffier, L.; Hoekstra, H. E.; Jensen, J. D.

10.1101/152694 — evolutionary biology — Posted on 2017-06-20

618 Fine scale mapping of genomic introgressions within the Drosophila yakuba clade

Turissini, D. A.; Matute, D. R.

10.1101/152421 — evolutionary biology — Posted on 2017-06-20

619 Honey Bee (Apis mellifera) Exposomes and Biological Pathways Associated with Nosema ceranae Infection

Broadrup, R. L.; Mayack, C.; Schick, S. J.; Eppley, E. J.; White, H. K.; Macherone, A.

10.1101/152249 — ecology — Posted on 2017-06-20

620 RAPGEF5 regulates nuclear transport of β-catenin

Griffin, J. N.; del Viso, F.; Duncan, A. R.; Robson, A.; Kulkarni, S.; Liu, K. J.; Khokha, M. K.

10.1101/152892 — developmental biology — Posted on 2017-06-20

621 Olfactory learning modulates the expression of molecular chaperones in C. elegans

Ooi, F. K.; Prahlad, V.

10.1101/152736 — cell biology — Posted on 2017-06-20

622 Spontaneous Phase Separation of Cocultured Cell Mixtures In vitro

Hadjiantoniou, S. V.; Leblanc-Latour, M.; Ignacio, M.; Lefevbre, C.; Slater, G.; Pelling, A. E.

10.1101/152819 — biophysics — Posted on 2017-06-20

623 Mechanical mismatch between Ras transformed and untransformed epithelial cells.

Gullekson, C.; Cojoc, G.; Schurmann, M.; Guck, J.; Pelling, A.

10.1101/152942 — biophysics — Posted on 2017-06-20

624 Specter: linear deconvolution as a new paradigm for targeted analysis of data-independent acquisition mass spectrometry proteomics

Peckner, R.; Myers, S. A.; Egertson, J. D.; Johnson, R. S.; Carr, S. A.; MacCoss, M. J.; Jaffe, J. D.

10.1101/152744 — bioinformatics — Posted on 2017-06-20

625 Viral and Bacterial Communities of Colorectal Cancer

Hannigan, G. D.; Duhaime, M. B.; Ruffin, M. T.; Koumpouras, C. C.; Schloss, P. D.

10.1101/152868 — microbiology — Posted on 2017-06-20

626 vqtl: An R package for Mean-Variance QTL Mapping

Corty, R. W.; Valdar, W.

10.1101/149377 — genetics — Posted on 2017-06-20

627 Negative frequency-dependent selection is frequently confounding

Brisson, D.

10.1101/113324 — evolutionary biology — Posted on 2017-06-20

628 Allele specific expression analysis identifies regulatory variation associated with stress-related genes in the Mexican highland maize landrace Palomero Toluqueno

Aguilar-Rangel, M. R.; Chavez Montes, R. A.; Gonzalez-Segovia, E.; Ross-Ibarra, J.; Simpson, J.; Sawers, R. J. H.

10.1101/152397 — plant biology — Posted on 2017-06-20

629 Persistent homology demarcates a leaf morphospace

Li, M.; An, H.; Angelovici, R.; Bagaza, C.; Batushansky, A.; Clark, L.; Coneva, V.; Donoghue, M.; Edwards, E.; Fajardo, D.; Fang, H.; Frank, M.; Gallaher, T.; Gebken, S.; Hill, T.; Jansky, S.; Kaur, B.; Klahs, P.; Klein, L.; Kuraparthy, V.; Londo, J.; Migicovsky, Z.; Miller, A.; Mohn, R.; Myles, S.; Otoni, W.; Pires, J. C.; Riffer, E.; Schmerler, S.; Spriggs, E.; Topp, C.; Van Deynze, A.; Zhang, K.; Zhu, L.; Zink, B. M.; Chitwood, D. H.

10.1101/151712 — plant biology — Posted on 2017-06-20

630 A Longitudinal Model for Functional Connectivity Using Resting-State fMRI

Hart, B.; Cribben, I.; Fiecas, M.

10.1101/152538 — neuroscience — Posted on 2017-06-20

631 Chd8 haploinsufficient mice display anomalous behaviours, increased brain size and cortical hyper-connectivity

Suetterlin, P.; Hurley, S.; Mohan, C.; Riegman, K. L. H.; Pagani, M.; Caruso, A.; Ellegood, J.; Galbusera, A.; Crespo-Enriquez, I.; Michetti, C.; Ellingford, R.; Brock, O.; Delogu, A.; Francis-West, P.; Lerch, J. P.; Scattoni, M. L.; Gozzi, A.; Fernandes, C.; Basson, A.

10.1101/143552 — neuroscience — Posted on 2017-06-20

632 Large nuisance modulation has little impact on IT target match performance

Roth, N.; Rust, N. C.

10.1101/152181 — neuroscience — Posted on 2017-06-20

633 Combining images and anatomical knowledge to improve automated vein segmentation in MRI

Ward, P. G. D.; Ferris, N. J.; Raniga, P.; Dowe, D. L.; Ng, A. C. L.; Barnes, D. G.; Egan, G. F.

10.1101/152389 — neuroscience — Posted on 2017-06-20

634 Copy Number Variation Analysis of 100 Twin Pairs Enriched for Neurodevelopmental Disorders

Stamouli, S.; Anderlid, B.-M.; Willfors, C.; Thiruvahindrapuram, B.; Wei, J.; Berggren, S.; Nordgren, A.; Scherer, S.; Lichtenstein, P.; Tammimies, K.; Bolte, S.

10.1101/152611 — genetics — Posted on 2017-06-20

635 Reconstructing cancer karyotypes from short read data: the half full and half empty glass

Eitan, R.; Shamir, R.

10.1101/152447 — bioinformatics — Posted on 2017-06-20

636 ORIGAMI: A Software Suite for Activated Ion Mobility Mass Spectrometry (aIM-MS) Applied To Multimeric Protein Assemblies

Migas, L. G.; France, A.; Bellina, B.; Barran, P.

10.1101/152686 — bioinformatics — Posted on 2017-06-20

637 Aggressiveness as a latent personality trait of domestic dogs: testing local independence and measurement invariance

Goold, C.; Newberry, R. C.

10.1101/117440 — animal behavior and cognition — Posted on 2017-06-20

638 TET-mediated epimutagenesis of the Arabidopsis thaliana methylome

Ji, L.; Jordan, W. T.; Shi, X.; Hu, L.; He, C.; Schmitz, R. J.

10.1101/151027 — plant biology — Posted on 2017-06-20

639 Combining semi-automated image analysis techniques with machine learning algorithms to accelerate large scale genetic studies

Atkinson, J. A.; Lobet, G.; Noll, M.; Meyer, P. E.; Griffiths, M.; Wells, D. M.

10.1101/152702 — plant biology — Posted on 2017-06-20

640 Silver fluoride as a treatment for the disease dental caries

Horst, J. A.; Seto, J.

10.1101/152207 — pharmacology and toxicology — Posted on 2017-06-20

641 Towards a unified theory of efficient, predictive and sparse coding

Chalk, M.; Marre, O.; Tkacik, G.

10.1101/152660 — neuroscience — Posted on 2017-06-20

642 Sex differences in gene regulation in the dorsal root ganglion after nerve injury

Stephens, K. E.; Zhou, W.; Ji, Z.; He, S.; Ji, H.; Guan, Y.; Taverna, S. D.

10.1101/152652 — neuroscience — Posted on 2017-06-20

643 Normal CA1 place fields but discoordinated network discharge in a Fmr1-null mouse model of fragile X syndrome

Sparks, F. T.; Talbot, Z. N.; Dvorak, D.; Curran, B. M.; Alarcon, J. M.; Fenton, A. A.

10.1101/152462 — neuroscience — Posted on 2017-06-20

644 Increased ParB level affects expression of stress response, adaptation and virulence operons and potentiates repression of promoters adjacent to the high affinity binding sites parS3 and parS4 in Pseudomonas aeruginosa

Kawałek, A.; Głabski, K.; Bartosik, A. A.; Fogtman, A.; Jagura-Burdzy, G.

10.1101/151340 — microbiology — Posted on 2017-06-20

645 Epidermal Wnt signalling regulates transcriptome heterogeneity and proliferative fate in neighbouring cells

Ghahramani, A.; Donati, G.; Luscombe, N. M.; Watt, F. M.

10.1101/152637 — genomics — Posted on 2017-06-20

646 Genetic and Environmental Influences on Pubertal Hormones in Human Hair across Development

Grotzinger, A. D.; Briley, D. A.; Engelhardt, L. E.; Mann, F. D.; Patterson, M. W.; Tackett, J. L.; Tucker-Drob, E. M.; Harden, K. P.

10.1101/152470 — genetics — Posted on 2017-06-20

647 Epigenetic regulation of genome integrity by a prion-based mechanism

Byers, J. S.; Garcia, D. M.; Jarosz, D. F.

10.1101/152512 — genetics — Posted on 2017-06-20

648 Honey Bee (Apis mellifera) Exposomes and Biological Pathways Associated with Nosema ceranae Infection

Broadrup, R. L.; Mayack, C.; Schick, S. J.; Eppley, E. J.; White, H. K.; Macherone, A.

10.1101/152249 — ecology — Posted on 2017-06-20

649 Complex polymorphisms in endocytosis genes suggest alpha-cyclodextrin against metastases in breast cancer

Wittkowski, K. M.; Dadurian, C.; Kim, H. S.; Hoshino, A.; Lyden, D.

10.1101/152405 — cancer biology — Posted on 2017-06-20

650 Molecular insights into conformational dynamics associated with the open-closed-phosphorylated states of PITPα

Kotyada, C.

10.1101/152587 — biophysics — Posted on 2017-06-20

651 Impact of fluorescent protein fusions on the bacterial flagellar motor

Heo, M.; Nord, A. L.; Chamousset, D.; van Rijn, E.; Beaumont, B. J. E.; Pedaci, F.

10.1101/152595 — biophysics — Posted on 2017-06-20

652 Experimenting with reproducibility in bioinformatics

Kim, Y.-M.; Poline, J.-B.; Dumas, G.

10.1101/143503 — bioinformatics — Posted on 2017-06-20

653 Comparative analyses of venom-associated genes from an Old World viper, Daboia russelii

Krishnan, N. M.; Panda, B.

10.1101/152082 — bioinformatics — Posted on 2017-06-20

654 The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data.

Menschaert, G.; Wang, X.; Jones, A. R.; Ghali, F.; Fenyo, D.; Olexiouk, V.; Zhang, B.; Deutsch, E. W.; Ternent, T.; Vizcaino, J. A.

10.1101/152579 — bioinformatics — Posted on 2017-06-20

655 MicroED Structures from Micrometer Thick Protein Crystals

Martynowycz, M.; Glynn, C.; Miao, J.; de la Cruz, M. J.; Hattne, J.; Shi, D.; Cascio, D.; Rodriguez, J.; Gonen, T.

10.1101/152504 — biochemistry — Posted on 2017-06-20

656 Born to be asocial: newly-hatched tortoises spontaneously avoid unfamiliar individuals

Versace, E.; Damini, S.; Caffini, M.; Stancher, G.

10.1101/152314 — animal behavior and cognition — Posted on 2017-06-20

657 Group-level progressive alterations in brain connectivity patterns revealed by diffusion-tensor brain networks across severity stages in Alzheimer’s disease

Rasero, J.; Alonso-Montes, C.; Diez, I.; Olabarrieta-Landa, L.; Remaki, L.; Escudero, I.; Mateos Goni, B.; Bonifazi, P.; Fernandez Martinez, M.; Arango-Lasprilla, J. C.; Stramaglia, S.; Cortes, J. M.

10.1101/105270 — neuroscience — Posted on 2017-06-20

658 Lis1 has two opposing modes of regulating cytoplasmic dynein

DeSantis, M. E.; Cianfrocco, M. A.; Htet, Z. M.; Tran, P. T.; Reck-Peterson, S. L.; Leschziner, A. E.

10.1101/152645 — cell biology — Posted on 2017-06-20

659 Automatic identification of informative regions with epigenomic changes associated to hematopoiesis

Carrillo de Santa Pau, E.; Juan, D.; Pancaldi, V.; Were, F.; Martin-Subero, J. I.; Rico, D.; Valencia, A.

10.1101/082917 — genomics — Posted on 2017-06-20

660 On The Advantages Of Evolutionary Passivity In Fluctuating Environments: Could Sex Be The Preadaptation For The Stability-Based Sorting?

Flegr, J.; Ponizil, P.

10.1101/139030 — evolutionary biology — Posted on 2017-06-20

661 Gelsolin regulates proliferation, apoptosis and invasion in NK/T-cell lymphoma cells through the PI3K/Akt signaling pathway

Guo, Y.; Zhang, H.; Xing, X.; Wang, L.; Zhang, J.; Yan, L.; Zheng, X.; Zhang, M.

10.1101/152603 — cancer biology — Posted on 2017-06-20

662 FORKS: Finding Orderings Robustly using K-means and Steiner trees

Sharma, M.; Li, H.; Sengupta, D.; Prabhakar, S.; Jayadeva, J.

10.1101/132811 — bioinformatics — Posted on 2017-06-20

663 Engineering Cell Sensing and Responses Using a GPCR-Coupled CRISPR-Cas System

Dingal, P. C. D. P.; Kipniss, N. H.; Labanieh, L.; Gao, Y.; Qi, L. S.

10.1101/152496 — synthetic biology — Posted on 2017-06-20

664 A urine-dependent human urothelial organoid offers a viable alternative to rodent models of infection

Horsley, H.; Dharmasena, D.; Malone-Lee, J.; Rohn, J. L.

10.1101/152033 — cell biology — Posted on 2017-06-20

665 Gating mass cytometry data by deep learning

Li, H.; Shaham, U.; Stanton, K. P.; Yao, Y.; Montgomery, R.; Kluger, Y.

10.1101/054411 — bioinformatics — Posted on 2017-06-20

666 Neural Correlates Of The Natural Observation Of An Emotionally Loaded Video

Nanni, M.; Martinez-Soto, J.; Gonzalez-Santos, L.; Barrios, F. A.

10.1101/152298 — neuroscience — Posted on 2017-06-20

667 A ‘phenotypic hangover’ – the predictive adaptive response and multigenerational effects of altered nutrition on the transcriptome of Drosophila melanogaster

Osborne, A. J.; Dearden, P. K.

10.1101/152330 — genomics — Posted on 2017-06-20

668 The Drosophila Formin Fhod Nucleates Actin Filaments

Patel, A. A.; Oztug Durer, Z. A.; van Loon, A. P.; Quinlan, M. E.

10.1101/152348 — cell biology — Posted on 2017-06-19

669 JQ1 reduces Epstein-Barr virus-associated lymphoproliferative disease in mice without sustained oncogene repression

He, A.; Miranda, J. L.

10.1101/152306 — cancer biology — Posted on 2017-06-19

670 Modeling the Mechanism of CLN025Beta-Hairpin Formation

McKiernan, K. A.; Husic, B. E.; Pande, V. S.

10.1101/145185 — biophysics — Posted on 2017-06-19

671 t-Darpp is an elongated monomer that binds to calcium and is phosphorylated by cyclin-dependent kinases 1 and 5

Momand, J.; Magdziarz, P.; Feng, Y.; Jiang, D.; Parga, E.; Celis, A.; Denny, E.; Wang, X.; Phillips, M. L.; Monterroso, E.; Kane, S. E.; Zhou, F.

10.1101/152272 — biochemistry — Posted on 2017-06-19

672 Whole-ganglion imaging of voltage in the medicinal leech using a double-sided microscope

Tomina, Y.; Wagenaar, D. A.

10.1101/145144 — neuroscience — Posted on 2017-06-19

673 PfClpC Is An Essential Clp Chaperone Required For Plastid Integrity And Clp Protease Stability In Plasdmodium Falciparum

Florentin, A.; Cobb, D. W.; Fishburn, J. D.; Cipriano, M. J.; Kim, P. S.; Fierro, M. A.; Striepen, B.; Muralidharan, V.

10.1101/080408 — microbiology — Posted on 2017-06-19

674 Human-specific genomic features of pluripotency regulatory networks link NANOG with fetal and adult brain development

Glinsky, G.

10.1101/022913 — genomics — Posted on 2017-06-19

675 Invasion fitness for gene-culture co-evolution in family-structured populations and an application to cumulative culture under vertical transmission

Mullon, C.; Lehmann, L.

10.1101/102624 — evolutionary biology — Posted on 2017-06-19

676 Assortment of flowering time and defense alleles in natural Arabidopsis thaliana populations suggests co-evolution between defense and vegetative lifespan strategies

Glander, S.; He, F.; Schmitz, G.; Witten, A.; Telschow, A.; de Meaux, J.

10.1101/131136 — evolutionary biology — Posted on 2017-06-19

677 A First Order Phase Transition Underlies the Formation of Sub-Diffractive Protein Aggregates in Mammalian Cells

Narayanan, A.; Meriin, A. B.; Sherman, M. Y.; Cisse, I. I.

10.1101/148395 — biophysics — Posted on 2017-06-19

678 Silver microwires from treating tooth decay with silver diamine fluoride

Seto, J.; Horst, J. A.; Parkinson, D. Y.; Frachella, J. C.; DeRisi, J. L.

10.1101/152199 — pharmacology and toxicology — Posted on 2017-06-19

679 A computational model that explores the effect of environmental geometries on grid cell representations

Jayakumar, S.; Narayanamurthy, R.; Ramesh, R.; Soman, K.; Muralidharan, V.; Chakravarthy, S.

10.1101/152066 — neuroscience — Posted on 2017-06-19

680 Free-living human cells reconfigure their chromosomes in the evolution back to uni-cellularity

Xu, J.; Peng, X.; Chen, Y.; Zhang, Y.; Ma, Q.; Liang, L.; Carter, A. C.; Lu, X.; Wu, C.-I.

10.1101/152223 — genomics — Posted on 2017-06-19

681 A Positive Feedback Loop Ensures Propagation of ROS Production and JNK Signaling Throughout Drosophila Tissue Regeneration

Khan, S. J.; Abidi, S. N. F.; Skinner, A.; Tian, Y.; Smith-Bolton, R. K.

10.1101/152140 — developmental biology — Posted on 2017-06-19

682 Genome Architecture Leads a Bifurcation in Cell Identity

Liu, S.; Chen, H.; Ronquist, S.; Seaman, L.; Ceglia, N.; Meixner, W.; Muir, L. A.; Chen, P.-Y.; Higgins, G.; Baldi, P.; Smale, S.; Hero, A.; Rajapakse, I.

10.1101/151555 — cell biology — Posted on 2017-06-19

683 APRIL and BAFF increase breast cancer cell stemness

Pelekanou, V.; Notas, G.; Athanasouli, P.; Alexakis, K.; Kiagiadaki, F.; Peroulis, N.; Kalyvianaki, K.; Kampouri, E.; Polioudaki, H.; Theodoropoulos, P.; Tsapis, A.; Castanas, E.; Kampa, M.

10.1101/151902 — cancer biology — Posted on 2017-06-19

684 Embryonic Exposure to Valproic Acid Disrupts Social Predispositions in Newly-Hatched Chicks

Sgado, P.; Rosa-Salva, O.; Versace, E.; Vallortigara, G.

10.1101/150391 — neuroscience — Posted on 2017-06-19

685 A single point mutation in a TssB/VipA homolog disrupts sheath formation in the type VI secretion system of Proteus mirabilis

Saak, C. C.; Zepeda-Rivera, M. A.; Gibbs, K. A.

10.1101/152124 — microbiology — Posted on 2017-06-19

686 The Caenorhabditis elegans RAD-51 isoform A is required for the induction of DNA-damage-dependent apoptosis

Germoglio, M.; Adamo, A.

10.1101/152058 — genetics — Posted on 2017-06-19

687 Expanding discovery from cancer genomes by integrating protein network analyses with in vivo tumorigenesis assays

Horn, H.; Lawrence, M. S.; Chouinard, C. R.; Shrestha, Y.; Xin Hu, J.; Worstell, E.; Shea, E.; Ilic, N.; Kim, E.; Kamburov, A.; Kashani, A.; Campbell, J. D.; Hahn, W. C.; Boehm, J. S.; Getz, G.; Lage, K.

10.1101/151977 — cancer biology — Posted on 2017-06-19

688 IMPDH polymers accommodate both catalytically active and inactive conformations

Anthony, S.; Burrell, A. L.; Johnson, M. C.; Duong-Ly, K. C.; Yin-Ming, K.; Michener, P.; Andrews, A.; Kollman, J. M.; Peterson, J. R.

10.1101/152173 — biochemistry — Posted on 2017-06-19

689 Evaluating 35 Methods to Generate Structural Connectomes Using Pairwise Classification

Petrov, D. M.; Ivanov, A.; Faskowitz, J.; Gutman, B.; Moyer, D.; Villalon, J.; Jahanshad, N.; Thompson, P.

10.1101/151993 — neuroscience — Posted on 2017-06-19

690 YASS: Yet Another Spike Sorter

Lee, J.; Carlson, D.; Shokri, H.; Yao, W.; Goetz, G.; Hagen, E.; Batty, E.; Chichilnisky, E.; Einevoll, G.; Paninski, L.

10.1101/151928 — neuroscience — Posted on 2017-06-19

691 Zika Virus in Salivary Glands of Five Different Species of Wild-Caught Mosquitoes from Mexico

Elizondo-Quiroga, D.; Medina-Sanchez, A.; Sanchez-Gonzalez, J. M.; Eckert, K. A.; Villalobos-Sanchez, E.; Navarro-Zuniga, A. R.; Sanchez-Tejeda, G.; Correa-Morales, F.; Gonzalez-Acosta, C.; Elizondo-Quiroga, A. E.; - Mexican Network for Virology, ; - Secretaria de Salud of Mexico,

10.1101/151951 — microbiology — Posted on 2017-06-19

692 Evolution of gene expression after whole-genome duplication: new insights from the spotted gar genome

Pasquier, J.; Braasch, I.; Batzel, P.; Cabau, C.; Montfort, J.; Nguyen, T.; Jouanno, E.; Berthelot, C.; Klopp, C.; Journot, L.; Postlethwait, J.; Guiguen, Y.; Bobe, J.

10.1101/151944 — evolutionary biology — Posted on 2017-06-19

693 Inter-organ regulation of Drosophila intestinal stem cell proliferation by a hybrid organ boundary zone

Sawyer, J.; Cohen, E.; Fox, D.

10.1101/152074 — developmental biology — Posted on 2017-06-19

694 Feedback inhibition of Ras activity coordinates cell fusion with cell-cell contact

Merlini, L.; Khalili, B.; Dudin, O.; Michon, L.; Vincenzetti, V.; Martin, S. G.

10.1101/152041 — cell biology — Posted on 2017-06-19

695 Partitioning and Enhanced Self-Assembly of Actin in Polypeptide Coacervates

McCall, P. M.; Srivastava, S.; Perry, S. L.; Kovar, D. R.; Gardel, M. L.; Tirrell, M. V.

10.1101/152025 — biophysics — Posted on 2017-06-19

696 Reflected stochastic differential equation models for constrained animal movement

Hanks, E.; Hooten, M.; Johnson, D.

10.1101/152017 — animal behavior and cognition — Posted on 2017-06-19

697 Weighted integration of short term memory and sensory signals in the oculomotor system

Deravet, N.; Blohm, G.; Orban de Xivry, J.-J.; Lefevre, P.

10.1101/151381 — neuroscience — Posted on 2017-06-19

698 Multi-Connection Pattern Analysis: Decoding the Representational Content of Neural Communication

Li, Y.; Richardson, R. M.; Ghuman, A. S.

10.1101/046441 — neuroscience — Posted on 2017-06-19

699 Double Maternal Effect: Duplicated Nucleoplasmin 2 Genes, npm2a And npm2b, Are Shared By Fish And Tetrapods, And Have Distinct And Essential Roles In Early Embryogenesis

Cheung, C. T.; Pasquier, J.; Bouleau, A.; Nguyen, T.-V.; Chesnel, F.; Guiguen, Y.; Bobe, J.

10.1101/104760 — evolutionary biology — Posted on 2017-06-19

700 Micromanagment of stem cell proliferation by the Drosophila testis stem cell niche

Albert, E. A.; Puretskaia, O. A.; Terekhanova, N. V.; Boekel, C.

10.1101/110619 — developmental biology — Posted on 2017-06-19

701 Topical Silver Diamine Fluoride For Dental Caries Arrest In Preschool Children: A Randomized Controlled Trial

Milgrom, P.; Horst, J. A.; Ludwig, S.; Rothen, M.; Chaffee, B. W.; Lyalina, S.; Pollard, K.; DeRisi, J. L.; Mancl, L.

10.1101/131870 — clinical trials — Posted on 2017-06-19

702 Developmental switching in Physarum polycephalum: Petri net analysis of single cell trajectories of gene expression indicates responsiveness and genetic plasticity of the Waddington quasipotential landscape

Werthmann, B.; Marwan, W.

10.1101/151878 — systems biology — Posted on 2017-06-19

703 Transcription Factor Target Gene Network governs the Logical Abstraction Analysis of the Synthetic Circuit in Leishmaniasis

Mol, M.; Kosey, D.; Bopanna, R.; Singh, S.

10.1101/151779 — systems biology — Posted on 2017-06-19

704 Cross-species Y chromosome function between malaria vectors of the Anopheles gambiae species complex

Bernardini, F.; Galizi, R.; Wunderlich, M.; Taxiarchi, C.; Kranjc, N.; Kyrou, K.; Hammond, A.; Nolan, T.; Lawniczak, M.; Papathanos, P. A.; Crisanti, A.; Windbichler, N.

10.1101/151894 — genetics — Posted on 2017-06-19

705 Impairment of mitochondrial respiratory function as an early biomarker of apoptosis induced by growth factor removal

Lemieux, H.; Subarsky, P.; Doblander, C.; Wurm, M.; Troppmair, J.; Gnaiger, E.

10.1101/151480 — cancer biology — Posted on 2017-06-19

706 A RESTful API to serve BAM file with OAuth2 compatible authorization

Delafontaine, J.; Pradervand, S.

10.1101/151787 — bioinformatics — Posted on 2017-06-19

707 The Reproducibility Of Research And The Misinterpretation Of P Values

Colquhoun, D.

10.1101/144337 — scientific communication and education — Posted on 2017-06-19

708 A group of nuclear factor Y transcription factors are likely sub-functionalized in the endosperm development of monocot

E, Z.; Li, T.; Zhang, H.; Liu, Z.; Deng, H.; Sharma, S.; Wang, L.; Wei, X.; Niu, B.; Chen, C.

10.1101/149047 — plant biology — Posted on 2017-06-19

709 Significant metabolic improvement by a water extract of olives: animal and human evidence

Peroulis, N.; Androutsopoulos, V. P.; Notas, G.; Koinaki, S.; Giakoumaki, E.; Spyros, A.; Manolopoulou, E.; Kargaki, S.; Tzardi, M.; Moustou, E.; Stephanou, E. G.; Bakogeorgou, E.; Malliaraki, N.; Niniraki, M.; Lionis, C.; Castanas, E.; Kampa, M.

10.1101/151860 — physiology — Posted on 2017-06-19

710 Beyond Consensus: Embracing Heterogeneity in Neuroimaging Meta-Analysis

Ngo, G. H.; Eickhoff, S. B.; Fox, P. T.; Spreng, R. N.; Yeo, B. T. T.

10.1101/149567 — neuroscience — Posted on 2017-06-19

711 Restoring wild type-like network dynamics and behaviour during adulthood in a mouse model of schizophrenia

Marissal, T.; Salazar, R. F.; Bertollini, C.; Mutel, S.; De Roo, M.; Rodriguez, I.; Muller, D.; Carleton, A.

10.1101/151795 — neuroscience — Posted on 2017-06-19

712 Response of microbial community function to fluctuating geochemical conditions within a legacy radioactive waste trench environment

Vazquez-Campos, X.; Kinsela, A. S.; Bligh, M. W.; Harrison, J. J.; Payne, T. E.; Waite, T. D.

10.1101/121376 — microbiology — Posted on 2017-06-19

713 Targeting the PD-1/PD-L1 pathway potentiates immunoediting and changes the dynamics of neutral evolution in a mouse model of colorectal cancer

Efremova, M.; Klepsch, V.; Charoentong, P.; Finotello, F.; Rieder, D.; Hackl, H.; Hermann-Kleiter, N.; Loewer, M.; Baier, G.; Krogsdam, A.; Trajanoski, Z.

10.1101/099747 — genomics — Posted on 2017-06-19

714 An efficient FLP-based toolkit for spatiotemporal control of gene expression in Caenorhabditis elegans

Munoz-Jimenez, C. M.; Ayuso, C.; Dobrzynska, A.; Torres, A.; Cruz-Ruiz, P. d. l.; Askjaer, P.

10.1101/107029 — genetics — Posted on 2017-06-19

715 Environmental factors dominate over host genetics in shaping human gut microbiota composition

10.1101/150540 — genetics — Posted on 2017-06-19

716 Intrinsic adaptive value and early fate of gene duplication revealed by a bottom-up approach

Rodrigo, G.; Fares, M.

10.1101/151910 — evolutionary biology — Posted on 2017-06-19

717 Fine-scale landscape genomics helps explain the slow spread of Wolbachia through the Aedes aegypti population in Cairns, Australia

Schmidt, T. L.; Filipovic, I.; Hoffmann, A. A.; Rasic, G.

10.1101/103598 — ecology — Posted on 2017-06-19

718 Kin competition overrules spatial selection as a driver of range expansions

Van Petegem, K. H. P.; Moerman, F.; Dahirel, M.; Fronhofer, E. A.; Vandegehuchte, M.; Van Leeuwen, T.; Wybouw, N.; Stoks, R.; Bonte, D.

10.1101/150011 — ecology — Posted on 2017-06-19

719 Stochastic model of contact inhibition and the proliferation of melanoma in situ

Morais, M. C. C.; Stuhl, I.; Sabino, A. U.; Lautenschlager, W. W.; Queiroga, A. S.; Tortelli, T. C.; Chammas, R.; Suhov, Y.; Ramos, A. F.

10.1101/110007 — cancer biology — Posted on 2017-06-19

720 Fine-mapping identifies causal variants for RA and T1D in DNASE1L3, SIRPG, MEG3, TNFAIP3 and CD28/CTLA4 loci

Westra, H.-J.; Martinez Bonet, M.; Onengut, S.; Lee, A.; Luo, Y.; Teslovich, N.; Worthington, J.; Martin, J.; Huizinga, T.; Klareskog, L.; Rantapaa-Dahlqvist, S.; Chen, W.-M.; Quinlan, A.; Todd, J. A.; Eyre, S.; Nigrovic, P.; Gregersen, P.; Rich, S.; Raychaudhuri, S.

10.1101/151423 — genetics — Posted on 2017-06-19

721 A dead gene walking: convergent degeneration of a clade of MADS-box genes in Brassicaceae

Hoffmeier, A.; Gramzow, L.; Bhide, A. S.; Kottenhagen, N.; Greifenstein, A.; Schubert, O.; Mummenhoff, K.; Becker, A.; Theissen, G.

10.1101/149484 — evolutionary biology — Posted on 2017-06-19

722 Identifying genetic variants that affect viability in large cohorts

Mostafavi, H.; Berisa, T.; Day, F.; Perry, J.; Przeworski, M.; Pickrell, J. K.

10.1101/085969 — evolutionary biology — Posted on 2017-06-19

723 In vitro evaluation of antagonism by Trichoderma spp. towards Phellinus noxius associated with rain tree (Samanea saman) and Senegal mahogany (Khaya senegalensis)

Burcham, D. C.; Wong, J. Y.; Abarrientos, N. V.; Mohamed Ali, M. I.; Fong, Y. K.; Schwarze, F. W. M. R.

10.1101/151753 — ecology — Posted on 2017-06-19

724 Cargo crowding at actin-rich regions along axons causes local traffic jams in neurons

Sood, P.; Murthy, K.; Kumar, T. V.; Nonet, M. L.; Menon, G. I.; Koushika, S. P.

10.1101/151761 — cell biology — Posted on 2017-06-19

725 Cross-inhibition of JNK by p38 visualized by multiplexed fluorescence imaging

Miura, H.; Matsuda, M.; Aoki, K.

10.1101/151852 — cell biology — Posted on 2017-06-19

726 A simple open-source method for highly multiplexed imaging of single cells in tissues and tumours

Lin, J.-R.; Izar, B.; Mei, S.; Wang, S.; Shah, P.; Sorger, P.

10.1101/151738 — cancer biology — Posted on 2017-06-19

727 The anticancer activity and immune modulating properties of combinatorial ensemble complementary (antisense) microRNA (fRNA) in combination with the immunomodulator - glycoproteid lectin from B. subtilis B-7025

Martynov, A.; Didenko, G.; Farber, B.; Farber, S.; Cruts, O.

10.1101/151829 — cancer biology — Posted on 2017-06-19

728 An Eigenvalue Test for spatial Principal Component Analysis

Montano, V.; Jombart, T.

10.1101/151639 — evolutionary biology — Posted on 2017-06-19

729 Comparative transcriptomics reveals lineage specific evolution of cold response in Pooideae

Groenvold, L.; Schubert, M.; Sandve, S. R.; Fjellheim, S.; Hvidsten, T. R.

10.1101/151431 — evolutionary biology — Posted on 2017-06-19

730 Photosynthesis is heavily chlororespiration-sensitive under fluctuating light conditions

Nawrocki, W.; Buchert, F.; Joliot, P.; Rappaport, F.; Bailleul, B.; Wollman, F.-A.

10.1101/151530 — plant biology — Posted on 2017-06-18

731 IFNα, a potential biomarker for stress vitiligo risk

Wu, H.; Wang, T.; Cai, M.; Fu, M.; Ping, F.; He, L.; An, X.; Shi, Z.; Xia, Z.; Shang, J.

10.1101/151571 — physiology — Posted on 2017-06-18

732 Gaze-stabilizing central vestibular neurons project asymmetrically to extraocular motoneuron pools

Schoppik, D.; Bianco, I. H.; Prober, D. A.; Douglass, A. D.; Robson, D. N.; Li, J. M. B.; Greenwood, J. S. F.; Soucy, E.; Engert, F.; Schier, A. F.

10.1101/151548 — neuroscience — Posted on 2017-06-18

733 Moment-to-moment fluctuations in neuronal excitability bias subjective perception rather than decision-making

Iemi, L.; Busch, N. A.

10.1101/151324 — neuroscience — Posted on 2017-06-18

734 A rational theory of the limitations of working memory and attention

van den Berg, R.; Ma, W. J.

10.1101/151365 — neuroscience — Posted on 2017-06-18

735 Language and cognitive impairment associated to a novel p.Cys63Arg change in the MED13L gene

Jimenez-Romero, M. S.; Carrasco-Salas, P.; Benitez-Burraco, A.

10.1101/151688 — neuroscience — Posted on 2017-06-18

736 Fibroblast Growth Factor Signaling Instructs Ensheathing Glia Wrapping of Drosophila Olfactory Glomeruli

Wu, B.; Li, J.; Chou, Y.-H.; Luginbuhl, D.; Luo, L.

10.1101/151662 — neuroscience — Posted on 2017-06-18

737 Risk of vascular events or death in different manifestations of cerebral small vessel disease: a 2-year follow-up study with a control group

Staszewski, J.; Piusinska-Macoch, R.; Brodacki, B.; Skrobowska, E.; Macek, K.; Stepien, A.

10.1101/151498 — neuroscience — Posted on 2017-06-18

738 Embryonic Exposure to Valproic Acid Disrupts Social Predispositions in Newly-Hatched Chicks

Sgado, P.; Rosa-Salva, O.; Versace, E.; Vallortigara, G.

10.1101/150391 — neuroscience — Posted on 2017-06-18

739 The coalescent for prokaryotes with homologous recombination from external source

Akita, T.; Takuno, S.; Innan, H.

10.1101/151308 — evolutionary biology — Posted on 2017-06-18

740 Distinct roles of the polarity factors Boi1 and Boi2 in the control of exocytosis and abscission in budding yeast

Masgrau, A.; Battola, A.; Sanmartin, T.; Pryszcz, L. P.; Gabaldon, T.; Mendoza, M.

10.1101/151670 — cell biology — Posted on 2017-06-18

741 Bridging the dynamics and organization of chromatin domains by mathematical modeling

Shinkai, S.; Nozaki, T.; Maeshima, K.; Togashi, Y.

10.1101/151563 — biophysics — Posted on 2017-06-18

742 Application of High-Dimensional Statistics and Network based Visualization techniques on Arab Diabetes and Obesity data

Mall, R.; Rawi, R.; Ullah, E.; Kunji, K.; Khadir, A.; Tiss, A.; Abubaker, J.; Dehbi, M.; Bensmail, H.

10.1101/151621 — bioinformatics — Posted on 2017-06-18

743 A platform for efficient transgenesis in Macrostomum lignano, a flatworm model organism for stem cell research

Wudarski, J.; Simanov, D.; Ustyantsev, K.; de Mulder, K.; Grelling, M.; Grudniewska, M.; Beltman, F.; Glazenburg, L.; Demircan, T.; Wunderer, J.; Qi, W.; Vizoso, D. B.; Weissert, P. M.; Olivieri, D.; Mouton, S.; Guryev, V.; Aboobaker, A.; Scharer, L.; Ladurner, P.; Berezikov, E.

10.1101/151654 — bioengineering — Posted on 2017-06-18

744 Effects of Human-Animal Interaction on Dog Salivary and Plasma Oxytocin and Vasopressin

MacLean, E.; Gesquiere, L.; Gee, N.; Levy, K.; Martin, W. L.; Carter, C. S.

10.1101/151506 — animal behavior and cognition — Posted on 2017-06-18

745 Validation of Salivary Oxytocin and Vasopressin as Biomarkers in Domestic Dogs

MacLean, E.; Gesquiere, L.; Gee, N.; Levy, K.; Martin, W. L.; Carter, C. S.

10.1101/151522 — animal behavior and cognition — Posted on 2017-06-18

746 Endogenous Oxytocin, Vasopressin and Aggression in Domestic Dogs

MacLean, E.; Gesquiere, L.; Gruen, M.; Sherman, B.; Martin, W. L.; Carter, C. S.

10.1101/151514 — animal behavior and cognition — Posted on 2017-06-18

747 FactorNet: a deep learning framework for predicting cell type specific transcription factor binding from nucleotide-resolution sequential data

Quang, D.; Xie, X.

10.1101/151274 — genomics — Posted on 2017-06-18

748 Reconstructing a metazoan genetic pathway with transcriptome-wide epistasis measurements

Angeles Albores, D.; Puckett Robinson, C.; Williams, B. A.; Wold, B. J.; Sternberg, P. W.

10.1101/112920 — genetics — Posted on 2017-06-18

749 Uncovering thematic structure to link co-occurring taxa and predicted functional content in 16S rRNA marker gene surveys

Woloszynek, S.; Mell, J. C.; Simpson, G.; O'Connor, M. P.; Rosen, G. L.

10.1101/146126 — bioinformatics — Posted on 2017-06-18

750 Construction of soil defined media using quantitative exometabolomic analysis of soil metabolites

Jenkins, S.; Swenson, T. L.; Lau, R.; Rocha, A.; Aaring, A.; Hazen, T. C.; Chakraborty, R.; Northen, T. R.

10.1101/151282 — microbiology — Posted on 2017-06-18

751 Dual role of E-cadherin in the regulation of invasive collective migration of mammary carcinoma cells

Elisha, Y.; Kalchenko, V.; Kuznetsov, Y.; Geiger, B.

10.1101/151613 — cancer biology — Posted on 2017-06-18

752 A robust statistical framework to detect multiple sources of hidden variation in single-cell transcriptomes

Lee, D.; Cheng, A.; Ucar, D.

10.1101/151217 — bioinformatics — Posted on 2017-06-18

753 High Performance Virtual Screening by Targeting a High-resolution RNA Dynamic Ensemble

Ganser, L. R.; Lee, J.; Sathyamoorthy, B.; Kansal, A. D.; Merriman, D. K.; Al-Hashimi, H. M.

10.1101/151407 — biochemistry — Posted on 2017-06-18

754 The value of DNA methylation profiling in characterizing preeclampsia and intrauterine growth restriction

Wilson, S. L.; Leavey, K.; Cox, B.; Robinson, W. P.

10.1101/151290 — genomics — Posted on 2017-06-18

755 High Frequency Actionable Pathogenic Exome Mutations in an Average-Risk Cohort

Rego, S.; Dagan-Rosenfeld, O.; Zhou, W.; Sailani, M. R.; Limcaoco, P.; Colbert, E.; Avina, M.; Wheeler, J.; Craig, C.; Salins, D.; Rost, H. L.; Dunn, J.; McLaughlin, T.; Steinmetz, L. M.; Bernstein, J. A.; Snyder, M. P.

10.1101/151225 — genomics — Posted on 2017-06-18

756 FactorNet: a deep learning framework for predicting cell type specific transcription factor binding from nucleotide-resolution sequential data

Quang, D.; Xie, X.

10.1101/151274 — genomics — Posted on 2017-06-18

757 Punctuated evolution shaped modern vertebrate diversity

Landis, M.; Schraiber, J. G.

10.1101/151175 — evolutionary biology — Posted on 2017-06-18

758 Computational Complex Predator-Prey Dynamics

Chaudhuri, A.; Hassan, S. S.

10.1101/151605 — ecology — Posted on 2017-06-18

759 Genome Architecture Leads a Bifurcation in Cell Identity

Liu, S.; Chen, H.; Ronquist, S.; Seaman, L.; Ceglia, N.; Meixner, W.; Muir, L. A.; Chen, P.-Y.; Higgins, G.; Baldi, P.; Smale, S.; Hero, A.; Rajapakse, I.

10.1101/151555 — cell biology — Posted on 2017-06-18

760 Impairment of mitochondrial respiratory function as an early biomarker of apoptosis induced by growth factor removal

Lemieux, H.; Subarsky, P.; Doblander, C.; Wurm, M.; Troppmair, J.; Gnaiger, E.

10.1101/151480 — cancer biology — Posted on 2017-06-18

761 Biological classification with RNA-Seq data: Can alternative splicing enhance machine learning classifier?

Johnson, N. T.; Dhroso, A.; Hughes, K. J.; Korkin, D.

10.1101/146340 — bioinformatics — Posted on 2017-06-18

762 A descending pathway through electrical coupling facilitates undulatory wave propagation in C. elegans

Xu, T.; Huo, J.; Shao, S.; Po, M.; Kawano, T.; Lu, Y.; Wu, M.; Zhen, M.; Wen, Q.

10.1101/131490 — neuroscience — Posted on 2017-06-18

763 Phenotypic consequences of RNA polymerase dysregulation in Escherichia coli

Sarkar, P.; Switzer, A.; Peters, C.; Pogliano, J.; Wigneshweraraj, S.

10.1101/150581 — microbiology — Posted on 2017-06-18

764 Environmental factors dominate over host genetics in shaping human gut microbiota composition

10.1101/150540 — genetics — Posted on 2017-06-18

765 Potential for rapid genetic adaptation to warming in a Great Barrier Reef coral.

Matz, M. V.; Treml, E. A.; Aglyamova, G. V.; van Oppen, M. J. H.; Bay, L. K.

10.1101/114173 — evolutionary biology — Posted on 2017-06-18

766 Distinct effects of tubulin isotype mutations on neurite growth in Caenorhabditis elegans

Zheng, C.; Diaz-Cuadros, M.; Jao, S. L.; Nguyen, K.; Hall, D. H.; Chalfie, M.

10.1101/131326 — cell biology — Posted on 2017-06-18

767 Dissecting super-enhancer hierarchy based on chromatin interactions

Huang, J.; Li, K.; Cai, W.; Liu, X.; Zhang, Y.; Orkin, S. H.; Xu, J.; Yuan, G.-C.

10.1101/149583 — bioinformatics — Posted on 2017-06-18

768 Improved Split Fluorescent Proteins For Endogenous Protein Labeling

Feng, S.; Sekine, S.; Pessino, V.; Li, H.; Leonetti, M. D.; Huang, B.

10.1101/137059 — bioengineering — Posted on 2017-06-18

769 Going down the rabbit hole: a review on methods characterizing selection and demography in natural populations

Bourgeois, Y.; Hazzouri, K. M.; Warren, B.

10.1101/052761 — evolutionary biology — Posted on 2017-06-18

770 EsaB is a core component of the Staphylococcus aureus Type VII secretion system

Casabona, M. G.; Buchanan, G.; Zoltner, M.; Harkins, C. P.; Holden, M. T. G.; Palmer, T.

10.1101/151316 — microbiology — Posted on 2017-06-17

771 CGRP signaling mediates prolonged meningeal afferent activation evoked by brief local K+ stimulation but not cortical spreading depression-induced afferent sensitization

Zhao, J.; Levy, D.

10.1101/151464 — neuroscience — Posted on 2017-06-17

772 A descending pathway through electrical coupling facilitates undulatory wave propagation in C. elegans

Xu, T.; Huo, J.; Shao, S.; Po, M.; Kawano, T.; Lu, Y.; Wu, M.; Zhen, M.; Wen, Q.

10.1101/131490 — neuroscience — Posted on 2017-06-17

773 Suppression of non-homologous end joining does not rescue DNA repair defects in Fanconi anemia patient cells

Thongthip, S.; Conti, B. A.; Lach, F. P.; Smogorzewska, A.

10.1101/151472 — molecular biology — Posted on 2017-06-17

774 Astrin-SKAP complex reconstitution reveals its kinetochore interaction with microtubule-bound Ndc80

Kern, D.; Wilson-Kubalek, E.; Cheeseman, I.

10.1101/151399 — cell biology — Posted on 2017-06-17

775 ProbAnnoWeb and ProbAnnoPy: probabilistic annotation and gap-filling of metabolic reconstructions

King, B.; Farrah, T.; Richards, M.; Mundy, M.; Simeonidis, E.; Price, N. D.

10.1101/151258 — systems biology — Posted on 2017-06-16

776 Evolution of steroid specificity in human, chicken, alligator, frog and zebrafish mineralocorticoid receptors: Allosteric interactions affect steroid specificity

Katsu, Y.; Oka, K.; Baker, M. E.

10.1101/151233 — physiology — Posted on 2017-06-16

777 RNA-mediated Genomic Arrangements in Mammalian Cells

Gupta, S. K.; Luo, L.; Yen, L.

10.1101/151241 — cancer biology — Posted on 2017-06-16

778 The Neuron Specific Formin Delphilin Nucleates Actin Filaments but Does Not Enhance Elongation

Silkworth, W. T.; Kunes, K. L.; Nickel, G. C.; Phillips, M. L.; Quinlan, M. E.; Vizcarra, C. L.

10.1101/151191 — biochemistry — Posted on 2017-06-16

779 High-quality de novo genome assembly of the Dekkera bruxellensis UMY321 yeast isolate using Nanopore MinION sequencing

Fournier, T.; Gounot, J.-S.; Freel, K. C.; Cruaud, C.; Lemainque, A.; Aury, J.-M.; Wincker, P.; Schacherer, J.; Friedrich, A.

10.1101/151167 — genomics — Posted on 2017-06-16

780 The utility of visual estimation of cover for rapid assessment of graminoid abundance in forest and grassland habitats in studies of animal foraging

Gautam, H.; Potdar, G. G.; Vidya, T. N. C.

10.1101/012716 — ecology — Posted on 2017-06-16

781 simExTargId: An R package for real-time LC-MS metabolomic data analysis, instrument failure/drift notification and MS2 target identification

Edmands, W. M. B.; Rappaport, S. M.

10.1101/151159 — bioinformatics — Posted on 2017-06-16

782 Landscape connectivity of a noxious invasive weed: promises and challenges of landscape genomics for knowledge-based weed management

Alvarado-Serrano, D. F.; Van Etten, M.; Chang, S.-M.; Baucom, R.

10.1101/054122 — evolutionary biology — Posted on 2017-06-16

783 Post-exercise cold-water immersion increases Na+,K+-ATPase α2-isoform mRNA content in parallel with elevated Sp1 expression in human skeletal muscle

Christiansen, D.; Murphy, R. M.; Broatch, J. R.; Bangsbo, J.; McKenna, M. J.; Kuang, J.; Bishop, D. J.

10.1101/151100 — physiology — Posted on 2017-06-16

784 Dynamic interhemispheric coordination in face processing

Lu, Z.; Guo, B.; Meng, M.

10.1101/151076 — neuroscience — Posted on 2017-06-16

785 Ambiguous specification of EGFR mutations compounded by nil or negligible fragmented gene counts and erroneous application of the Kappa statistic reiterates doubts on the veracity of the TEP-study

Chakraborty, S.

10.1101/150904 — genomics — Posted on 2017-06-16

786 DNA isolation protocol effects on nuclear DNA analysis by microarrays, droplet digital PCR, and whole genome sequencing, and on mitochondrial DNA copy number estimation

Nacheva, E.; Mokretar, K.; Soenmez, A.; Pittman, A. M.; Grace, C.; Valli, R.; Ejaz, A.; Vattathil, S.; Maserati, E.; Houlden, H.; Taanman, J.-W.; Schapira, A. H.; Proukakis, C.

10.1101/151126 — genomics — Posted on 2017-06-16

787 Addressing the looming identity crisis in single cell RNA-seq

Crow, M.; Paul, A.; Ballouz, S.; Huang, Z. J.; Gillis, J.

10.1101/150524 — bioinformatics — Posted on 2017-06-16

788 Scalable composition frameworks for multicellular logic

Guiziou, S.; Mayonove, P.; Ulliana, F.; Moreau, V.; Leclere, M.; Bonnet, J.

10.1101/150987 — synthetic biology — Posted on 2017-06-16

789 Just above chance: is it harder to decode information from human prefrontal cortex BOLD signals?

Bhandari, A.; Gagne, C.; Badre, D.

10.1101/127324 — neuroscience — Posted on 2017-06-16

790 Undocumented Potential For Primary Productivity In A Globally-Distributed Bacterial Photoautotroph

Graham, E.; Heidelberg, J. F.; Tully, B.

10.1101/140715 — microbiology — Posted on 2017-06-16

791 Conflicting evolutionary histories of the mitochondrial and nuclear genomes in New World Myotis

Platt, R. N.; Faircloth, B. C.; Sullivan, K. A. M.; Kieran, T.; Glenn, T. C.; Vandewege, M. W.; Lee, T. E.; Baker, R. J.; Stevens, R. D.; Ray, D. A.

10.1101/112581 — evolutionary biology — Posted on 2017-06-16

792 Conflicting evolutionary histories of the mitochondrial and nuclear genomes in New World Myotis

Platt, R. N.; Faircloth, B. C.; Sullivan, K. A. M.; Kieran, T.; Glenn, T. C.; Vandewege, M. W.; Lee, T. E.; Baker, R. J.; Stevens, R. D.; Ray, D. A.

10.1101/112581 — evolutionary biology — Posted on 2017-06-16

793 A single cell transcriptional roadmap for cardiopharyngeal fate diversification

Wang, W.; Niu, X.; Jullian, E.; Kelly, R. G.; Satija, R.; Christiaen, L.

10.1101/150235 — developmental biology — Posted on 2017-06-16

794 CD95L derived si- and shRNAs and the CD95L mRNA kill cancer cells through an RNAi mechanism by targeting survival genes

Putzbach, W.; Gao, Q. Q.; Patel, M.; Sarshad, A. A.; Hadji, A.; van Dongen, S.; Haluck-Kangas, A.; Bartom, E.; Stults, A.; Qadir, A. S.; Kim, K.-Y. A.; Hafner, M.; Zhao, J. C.; Murmann, A. E.; Peter, M. E.

10.1101/141952 — cancer biology — Posted on 2017-06-16

795 Scalable composition frameworks for multicellular logic

Guiziou, S.; Mayonove, P.; Ulliana, F.; Moreau, V.; Leclere, M.; Bonnet, J.

10.1101/150987 — synthetic biology — Posted on 2017-06-16

796 Regulation of Na+,K+-ATPase isoforms and phospholemman (FXYD1) in skeletal muscle fibre types by exercise training and cold-water immersion in men

Christiansen, D.; Murphy, R. M.; Broatch, J. R.; Bangsbo, J.; McKenna, M. J.; Bishop, D. J.

10.1101/151035 — physiology — Posted on 2017-06-16

797 Costing ‘the’ MTD

Norris, D. C.

10.1101/150821 — pharmacology and toxicology — Posted on 2017-06-16

798 High-throughput annotation of full-length long noncoding RNAs with Capture Long-Read Sequencing (CLS)

Lagarde, J.; Uszczynska-Ratajczak, B.; Carbonell, S.; Perez-Lluch, S.; Abad, A.; Davis, C.; Gingeras, T. R.; Frankish, A.; Harrow, J.; Guigo, R.; Johnson, R.

10.1101/105064 — genomics — Posted on 2017-06-16

799 Quantifying uncertainty in the inference of generalized coalescents

Wallstrom, T. C.; Wilkins, J. F.; Bhattacharya, T.

10.1101/150342 — genetics — Posted on 2017-06-16

800 Environmental factors dominate over host genetics in shaping human gut microbiota composition

10.1101/150540 — genetics — Posted on 2017-06-16

801 Selecting among three basic fitness landscape models: additive, multiplicative and stickbreaking

Miller, C. R.; Van Leuven, J. T.; Wichman, H. A.; Joyce, P.

10.1101/150763 — evolutionary biology — Posted on 2017-06-16

802 Impact of domain knowledge on blinded predictions of binding energies by alchemical free energy calculations

Mey, A. S. J. S.; Juarez-Jimenez, J.; Michel, J.

10.1101/150474 — biophysics — Posted on 2017-06-16

803 Thermodynamic Integration in 3n Dimensions without Biases or Alchemy for Protein Interactions

Chen, L. Y.

10.1101/150870 — biophysics — Posted on 2017-06-16

804 Out-of-equilibrium statistical dynamics of spatial pattern generating cellular automata

Olimpio, E. P.; Youk, H.

10.1101/151050 — biophysics — Posted on 2017-06-16

805 GEOracle: Mining perturbation experiments using free text metadata in Gene Expression Omnibus

Djordjevic, D.; Chen, Y. X.; Kwan, S. L. S.; Ling, R. W. K.; Qian, G.; Woo, C. Y. Y.; Ellis, S. J.; Ho, J. W. K.

10.1101/150896 — bioinformatics — Posted on 2017-06-16

806 Less is More: Oligomer extraction and hydrothermal annealing increase PDMS bonding forces for new microfluidics assembly and for biological studies

Millet, L.; Jain, A.; Gillette, M.

10.1101/150953 — bioengineering — Posted on 2017-06-16

807 Platform for rapid nanobody discovery in vitro

McMahon, C.; Baier, A. S.; Zheng, S.; Pascolutti, R.; Ong, J. X.; Erlandson, S. C.; Hilger, D.; Ring, A. M.; Manglik, A.; Kruse, A. C.

10.1101/151043 — biochemistry — Posted on 2017-06-16

808 Dynamic interactions between top-down expectations and conscious awareness

Meijs, E.; Slagter, H. A.; de Lange, F. P.; van Gaal, S.

10.1101/151019 — neuroscience — Posted on 2017-06-16

809 Mechanisms of transmission ratio distortion at hybrid sterility loci within and between Mimulus species

Kerwin, R. E.; Sweigart, A. L.

10.1101/150854 — evolutionary biology — Posted on 2017-06-16

810 Death of the assumption that "latent period" is fixed over the course of a plant disease epidemic

Frederic, S.

10.1101/148619 — epidemiology — Posted on 2017-06-16

811 Triazavirine supramolecular complexes as modifiers of the peptide oligomeric structure

Shvetsov, A.; Zabrodskaya, Y.; Nekrasov, P.; Egorov, V.

10.1101/150664 — biophysics — Posted on 2017-06-16

812 Hands-free control of heterologous gene expression in batch cultures

Borkowski, O.; Endy, D.; Subsoontorn, P.

10.1101/150375 — synthetic biology — Posted on 2017-06-16

813 Arabidopsis U1 snRNP subunit LUC7 functions in alternative splicing and preferential removal of terminal introns

de Francisco Amorim, M.; Willing, E.-M.; Szabo, E. X.; Droste-Borel, I.; Macek, B.; Schneeberger, K.; Laubinger, S.

10.1101/150805 — plant biology — Posted on 2017-06-16

814 Local differences in neuronal activation level decorrelate spatially coherent global fluctuations in gamma rhythms

Lakshminarasimhan, K.; Logothetis, N.; Keliris, G.

10.1101/150532 — neuroscience — Posted on 2017-06-16

815 Spontaneous cortical activity transiently organises into frequency specific phase-coupling networks

Vidaurre, D.; Hunt, L. T.; Quinn, A. J.; Hunt, B. A. E.; Brookes, M. J.; Nobre, A. C.; Woolrich, M. W.

10.1101/150607 — neuroscience — Posted on 2017-06-16

816 Genetic architecture of early childhood growth phenotypes gives insights into their link with later obesity

De Silva, N. M. G.; Sebert, S.; Couto Alves, A.; Sovio, U.; Das, S.; Taal, R.; Warrington, N. M.; Lewin, A. M.; Kaakinen, M.; Cousminer, D.; Thiering, E.; Timpson, N. J.; Karhunen, V.; Bond, T.; Estivill, X.; Lindi, V.; Bradfield, J. P.; Geller, F.; Coin, L. J. M.; Loh, M.; Barton, S. J.; Beilin, L. J.; Bisgaard, H.; Bonnelykke, K.; Alili, R.; Hatoum, I. J.; Schramm, K.; Cartwright, R.; Charles, M.-A.; Salerno, V.; Clement, K.; van Duijn, C. M.; Moltchanova, E.; Eriksson, J. G.; Elks, C.; Feenstra, B.; Flexeder, C.; Franks, S.; Frayling, T. M.; Freathy, R. M.; Elliott, P.; Widen, E.; Hakonarso

10.1101/150516 — genomics — Posted on 2017-06-16

817 How prior knowledge prepares perception: Prestimulus oscillations carry perceptual expectations and influence early visual responses.

Samaha, J.; Boutonnet, B.; Lupyan, G.

10.1101/076687 — neuroscience — Posted on 2017-06-16

818 Laminar organization of encoding and memory reactivation in the parietal cortex

Wilber, A.; Skelin, I.; McNaughton, B. L.

10.1101/110684 — neuroscience — Posted on 2017-06-16

819 K-mer clustering algorithm using a MapReduce framework: application to the parallelization of the Inchworm module of Trinity

Kim, C. S.; Winn, M. D.; Sachdeva, V.; Jordan, K. E.

10.1101/149948 — bioinformatics — Posted on 2017-06-16

820 Crosslinkers both drive and brake cytoskeletal remodeling and furrowing in cytokinesis

Descovich, C. P.; Cortes, D. B.; Ryan, S.; Nash, J.; Zhang, L.; Maddox, P. S.; Nedelec, F.; Maddox, A. S.

10.1101/150813 — cell biology — Posted on 2017-06-16

821 The SMuSh pathway is essential for survival during growth-induced compressive mechanical stress

Delarue, M.; Poterewicz, G.; Hoxha, O.; Choi, J.; Yoo, W.; Kayser, J.; Holt, L.; Hallatschek, O.

10.1101/150789 — cell biology — Posted on 2017-06-16

822 Producing Hfq/Sm Proteins and sRNAs for Structural and Biophysical Studies of Ribonucleoprotein Assembly

Stanek, K. A.; Mura, C.

10.1101/150672 — biochemistry — Posted on 2017-06-16

823 An evolutionary young defense metabolite influences the root growth of plants via the ancient TOR signaling pathway

Malinovsky, F. G.; Thomsen, M.-L.; Nintemann, S. J.; Jagd, L. M.; Bourgine, B.; Burow, M.; Kliebenstein, D. J.

10.1101/150730 — plant biology — Posted on 2017-06-15

824 Electrical Stimulus Artifact Cancellation and Neural Spike Detection on Large Multi-Electrode Arrays

Mena, G. E.; Grosberg, L. E.; Madugula, S.; Hottowy, P.; Litke, A.; Cunningham, J.; Chichilnisky, E.; Paninski, L.

10.1101/089912 — neuroscience — Posted on 2017-06-15

825 Karyotype stability and unbiased fractionation in the paleo-allotetraploid Cucurbita genomes

Sun, H.; Wu, S.; Zhang, G.; Jiao, C.; Guo, S.; Ren, Y.; Zhang, J.; Zhang, H.; Gong, G.; Jia, Z.; Zhang, F.; Tian, J.; Lucas, W. J.; Doyle, J. J.; Li, H.; Fei, Z.; Xu, Y.

10.1101/150755 — genomics — Posted on 2017-06-15

826 Spontaneous cortical activity transiently organises into frequency specific phase-coupling networks

Vidaurre, D.; Hunt, L. T.; Quinn, A. J.; Hunt, B. A. E.; Brookes, M. J.; Nobre, A. C.; Woolrich, M. W.

10.1101/150607 — neuroscience — Posted on 2017-06-15

827 Evidence for a causal link between left posterior alpha-beta power decreases and context-driven word production.

Piai, V.; Rommers, J.; Knight, R. T.

10.1101/150748 — neuroscience — Posted on 2017-06-15

828 Local differences in neuronal activation level decorrelate spatially coherent global fluctuations in gamma rhythms

Lakshminarasimhan, K.; Logothetis, N.; Keliris, G.

10.1101/150532 — neuroscience — Posted on 2017-06-15

829 Unexpected Early Proteomic Changes in Alzheimer’s Disease Model Mice Synaptosomes

Ball, K.; Pisconti, A.; Grounds, K.; Old, W.; Stowell, M.

10.1101/144972 — neuroscience — Posted on 2017-06-15

830 Phenotypic consequences of RNA polymerase dysregulation in Escherichia coli

Sarkar, P.; Switzer, A.; Peters, C.; Pogliano, J.; Wigneshweraraj, S.

10.1101/150581 — microbiology — Posted on 2017-06-15

831 Identification of a novel interspecific hybrid yeast from a metagenomic open fermentation sample using Hi-C

Smukowski Heil, C.; Burton, J. N.; Liachko, I.; Friedrich, A.; Hanson, N. A.; Morris, C. L.; Schacherer, J.; Shendure, J.; Thomas, J. H.; Dunham, M. J.

10.1101/150722 — genomics — Posted on 2017-06-15

832 The genetic overlap between mood disorders and cardio-metabolic diseases: A systematic review of genome wide and candidate gene studies

Amare, A. T.; Schubert, K. O.; Cohen-Woods, S.; Baune, B. T.

10.1101/150615 — genomics — Posted on 2017-06-15

833 Histamine signaling via the metabotropic receptor Trapped in endoderm 1 regulates courtship initiation in Drosophila melanogaster.

Zaki, S. A.; Sandhu, J.; French, R.

10.1101/150680 — genetics — Posted on 2017-06-15

834 Genome-wide association study of Alcohol Use Disorder Identification Test (AUDIT) scores in 20,328 research participants of European ancestry

Sanchez-Roige, S.; Fontanillas, P.; Elson, S. L.; - the 23andMe Research Team, ; Gray, J. C.; de Wit, H.; Davis, L. K.; MacKillop, J.; Palmer, A. A.

10.1101/147397 — genetics — Posted on 2017-06-15

835 Spatial resource heterogeneity creates local hotspots of evolutionary potential

Dolson, E.; Ofria, C.

10.1101/149302 — evolutionary biology — Posted on 2017-06-15

836 Rapid adaptation with gene flow via a reservoir of chromosomal inversion variation?

He, Q.; Knowles, L. L.

10.1101/150771 — evolutionary biology — Posted on 2017-06-15

837 Identification And Evolutionary Analysis Of Eight Non-Coding Genomic Elements Regulating Neurodevelopmental Genes

Novo, F. J.

10.1101/150482 — evolutionary biology — Posted on 2017-06-15

838 Mapping the ecological networks of microbial communities from steady-state data

Xiao, Y.; Angulo, M. T.; Friedman, J.; Waldor, M. K.; Weiss, S. T.; Liu, Y.-Y.

10.1101/150649 — ecology — Posted on 2017-06-15

839 Triazavirine supramolecular complexes as modifiers of the peptide oligomeric structure

Shvetsov, A.; Zabrodskaya, Y.; Nekrasov, P.; Egorov, V.

10.1101/150664 — biophysics — Posted on 2017-06-15

840 Inter-Tools: a toolkit for interactome analysis

Catabia, H. B.; Smith, C.; Ordovas, J.

10.1101/150706 — bioinformatics — Posted on 2017-06-15

841 Design Principle of Lysis/lysogeny Decision vis-a-vis Multiplicity of Infection

Wadhwa, D.

10.1101/146308 — systems biology — Posted on 2017-06-15

842 Amyloid accumulation drives proteome-wide alterations in mouse models of Alzheimers disease like pathology

Savas, J. N.; Wang, Y.-Z.; DeNardo, L. A.; Martinez-Bartolome, S.; McClatchy, D. B.; Hark, T. J.; Shanks, N. F.; Cozzolino, K. A.; Lavallee-Adam, M.; Smukowski, S. N.; Park, S. K.; Kelly, J. W.; Koo, E. H.; Nakagawa, T.; Masliah, E.; Ghosh, A.; Yates, J. R.

10.1101/150623 — neuroscience — Posted on 2017-06-15

843 Inducible, tunable and multiplex human gene regulation using CRISPR-Cpf1-based transcription factors

Tak, Y. G.; Kleinstiver, B. P.; Nunez, J. K.; Hsu, J. Y.; Gong, J.; Weissman, J. S.; Joung, J. K.

10.1101/150656 — molecular biology — Posted on 2017-06-15

844 Real-time detection of condensin-driven DNA compaction reveals a multistep binding mechanism

Eeftens, J. M.; Bisht, S.; Kerssemakers, J.; Haering, C.; Dekker, C.

10.1101/149138 — biophysics — Posted on 2017-06-15

845 xCell: Digitally portraying the tissue cellular heterogeneity landscape

Aran, D.; Hu, Z.; Butte, A. J.

10.1101/114165 — bioinformatics — Posted on 2017-06-15

846 Isolated from input: Transmodal cortex in the default mode network supports perceptually-decoupled and conceptually-guided cognition

Murphy, C.; Jefferies, E.; Rueschemeyer, S.-A.; Sormaz, M.; Wang, H.-t.; Margulies, D.; Smallwood, J.

10.1101/150466 — neuroscience — Posted on 2017-06-15

847 MIMoSA: A Method for Inter-Modal Segmentation Analysis

Valcarcel, A.; Linn, K.; Vandekar, S.; Satterthwaite, T.; Calabresi, P.; Pham, D.; Shinohara, R.

10.1101/150284 — neuroscience — Posted on 2017-06-15

848 Campylobacter jejuni transcriptome changes during loss of culturability in water

Bronowski, C.; Mustafa, K.; Goodhead, I.; James, C. E.; Nelson, C.; Lucaci, A.; Wigley, P.; Humphrey, T. J.; Williams, N. J.; Winstanley, C.

10.1101/150383 — microbiology — Posted on 2017-06-15

849 Association study of schizophrenia with variants in miR-137 binding sites

Curtis, D.; Emmett, W.

10.1101/150409 — genetics — Posted on 2017-06-15

850 A single cell transcriptional roadmap for cardiopharyngeal fate diversification

Wang, W.; Niu, X.; Jullian, E.; Kelly, R. G.; Satija, R.; Christiaen, L.

10.1101/150235 — developmental biology — Posted on 2017-06-15

851 scmap - A tool for unsupervised projection of single cell RNA-seq data

Kiselev, V. Y.; Hemberg, M.

10.1101/150292 — bioinformatics — Posted on 2017-06-15

852 Generation of Arctic-like Rabies Viruses Containing Chimeric Glycoproteins Enables Serological Potency Studies.

Bentley, E.; Ali, R.; Horton, D.; Corti, D.; Banyard, A.; Fooks, A.; Wright, E.

10.1101/150300 — microbiology — Posted on 2017-06-15

853 Animal-aided design - using a species life-cycle to improve open space planning and conservation in cities and elsewhere

Weisser, W.; Hauck, T.

10.1101/150359 — ecology — Posted on 2017-06-15

854 Life stage associated remodeling of lipid metabolism regulation in the duplicated Atlantic salmon genome

Gillard, G.; Harvey, T. N.; Gjuvsland, A.; Jin, Y.; Thomassen, M.; Lien, S.; Leaver, M.; Torgersen, J. S.; Hvidsten, T. R.; Vik, J. O.; Sandve, S. R.

10.1101/140442 — evolutionary biology — Posted on 2017-06-15

855 Model of a bilateral Brown-type central pattern generator for symmetric and asymmetric locomotion

Sobinov, A.; Yakovenko, S.

10.1101/146993 — neuroscience — Posted on 2017-06-15

856 Bacteria defend against phages through type IV pilus glycosylation

Harvey, H.; Bondy-Denomy, J.; Marquis, H.; Sztanko, K. M.; Davidson, A. R.; Burrows, L. L.

10.1101/150227 — microbiology — Posted on 2017-06-15

857 Challenges in estimating heritability of phase polyphenism: Insights from measured and simulated data in the desert locust

Jourdan-Pineau, H.; Pelissie, B.; Chapuis, E.; Chardonnet, F.; Pages, C.; Foucart, A.; Blondin, L.; Piou, C.; Chapuis, M.-P.

10.1101/149542 — evolutionary biology — Posted on 2017-06-15

858 Hemodynamic forces can be accurately measured in vivo with optical tweezers

Harlepp, S.; Thalmann, F.; Follain, G.; Goetz, J. G.

10.1101/150367 — biophysics — Posted on 2017-06-15

859 K-mer clustering algorithm using a MapReduce framework: application to the parallelization of the Inchworm module of Trinity

Kim, C. S.; Winn, M. D.; Sachdeva, V.; Jordan, K. E.

10.1101/149948 — bioinformatics — Posted on 2017-06-15

860 TiSAn: Tissue Specific Annotation of Genetic Variants

Vervier, K.; Michaelson, J. J.

10.1101/141408 — bioinformatics — Posted on 2017-06-15

861 Genome-wide analysis in UK Biobank identifies four loci associated with mood instability and genetic correlation with major depressive disorder, anxiety disorder and schizophrenia.

Ward, J.; Strawbridge, R.; Graham, N.; Bailey, M.; Freguson, A.; Lyall, D.; Cullen, B.; Pidgeon, L.; Cavanagh, J.; Mackay, D.; Pell, J.; O'Donovan, M.; Escott-Price, V.; Smith, D. J.

10.1101/117796 — neuroscience — Posted on 2017-06-15

862 Mice lacking NF-κB1 exhibit marked DNA damage responses and more severe gastric pathology in response to intraperitoneal tamoxifen administration.

Burkitt, M.; Williams, J. M.; Townsend, T.; Hough, R.; Duckworth, C. A.; Pritchard, D. M.

10.1101/112656 — immunology — Posted on 2017-06-15

863 Effects of DNA oxidation on the evolution of genomes

Sheinman, M.; Hermsen, R.

10.1101/150425 — evolutionary biology — Posted on 2017-06-15

864 Pushing The Limits Of Detection Of Weak Binding Using Fragment Based Drug Discovery: Identification Of New Cyclophilin Binders

Georgiou, C.; McNae, I. W.; Wear, M. A.; Ioannidis, H.; Michel, J.; Walkinshaw, M. D.

10.1101/136101 — biophysics — Posted on 2017-06-15

865 A Reagentless Biosensor For mRNA: A New Tool To Study Transcription

Cook, A.; Hari-Gupta, Y.; Toseland, C. P.

10.1101/142794 — biochemistry — Posted on 2017-06-15

866 Putting bandits into context: How function learning supports decision making

Schulz, E.; Konstantinidis, E.; Speekenbrink, M.

10.1101/081091 — animal behavior and cognition — Posted on 2017-06-15

867 An FGF-driven feed-forward circuit for spatiotemporal patterning of the cardiopharyngeal mesoderm in a simple chordate

Razy-Krajka, F.; Gravez, B.; Christiaen, L.

10.1101/138701 — developmental biology — Posted on 2017-06-14

868 Controlling cell shape on hydrogels using lift-off patterning

Moeller, J.; Denisin, A. K.; Sim, J. Y.; Wilson, R. E.; Ribeiro, A. J. S.; Pruitt, B. L.

10.1101/111195 — bioengineering — Posted on 2017-06-14

869 Astrocytes release prostaglandin E2 to modify respiratory network activity

Forsberg, D.; Ringstedt, T.; Herlenius, E.

10.1101/150250 — neuroscience — Posted on 2017-06-14

870 Assessing tACS-induced phosphene perception using closed-loop Bayesian optimization

Lorenz, R.; Simmons, L. E.; Monti, R. P.; Arthur, J. L.; Limal, S.; Laakso, I.; Leech, R.; Violante, I. R.

10.1101/150086 — neuroscience — Posted on 2017-06-14

871 Reducing resistance allele formation in CRISPR gene drives

Champer, J.; Liu, J.; Oh, S. Y.; Reeves, R.; Luthra, A.; Oakes, N.; Clark, A. G.; Messer, P. W.

10.1101/150276 — genetics — Posted on 2017-06-14

872 Imputation-Based Genomic Coverage Assessments of Current Genotyping Arrays: Illumina HumanCore, OmniExpress, Multi-Ethnic global array and sub-arrays, Global Screening Array, Omni2.5M, Omni5M, and Affymetrix UK Biobank

Nelson, S. C.; Romm, J. M.; Doheny, K. F.; Pugh, E. W.; Laurie, C. C.

10.1101/150219 — genetics — Posted on 2017-06-14

873 Approximate inference of gene regulatory network models from RNA-Seq time series data

Thorne, T.

10.1101/149674 — systems biology — Posted on 2017-06-14

874 Loss of CaMKI function disrupts salt aversive learning in C. elegans

Lim, J. P.; Fehlauer, H.; Glauser, D.; Brunet, A.; Goodman, M. B.

10.1101/149682 — neuroscience — Posted on 2017-06-14

875 Data-driven re-referencing of intracranial EEG based on independent component analysis (ICA)

Michelmann, S.; Treder, M. S.; Griffiths, B. J.; Kerren, C.; Roux, F.; Wimber, M.; Rollings, D.; Sawlani, V.; Chelvarajah, R.; Gollwitzer, S.; Kreiselmeyer, G.; Hamer, H.; Bowman, H.; Staresina, B.; Hanslmayr, S.

10.1101/150045 — neuroscience — Posted on 2017-06-14

876 Interhemispheric specialization in the rodent hippocampus: Implications for storage and retrieval of short- and long-term memories

Jordan, J. T.; Pytte, C. L.

10.1101/150193 — neuroscience — Posted on 2017-06-14

877 Space, Time and Episodic Memory: the Hippocampus is all over the Cognitive Map

Ekstrom, A.; Ranganath, C.

10.1101/150177 — neuroscience — Posted on 2017-06-14

878 Sparse coding and dimensionality reduction in cortex

Beyeler, M.; Rounds, E.; Carlson, K.; Dutt, N.; Krichmar, J. L.

10.1101/149880 — neuroscience — Posted on 2017-06-14

879 Ecophysiology of freshwater Verrucomicrobia inferred from genomes recovered through time-series metagenomics

He, S.; Stevens, S. L.; Chan, L.-K.; Bertilsson, S.; Glavina del Rio, T.; Tringe, S. G.; Malmstrom, R. R.; McMahon, K.

10.1101/150078 — microbiology — Posted on 2017-06-14

880 Modeling of cytometry data in logarithmic space: when is a bimodal distribution not bimodal?

Erez, A.; Vogel, R.; Mugler, A.; Belmonte, A.; Altan-Bonnet, G.

10.1101/150201 — immunology — Posted on 2017-06-14

881 Maternal loading of a small heat shock protein increases embryo thermal tolerance in Drosophila melanogaster

Lockwood, B. L.; Julick, C. R.; Montooth, K. L.

10.1101/150102 — evolutionary biology — Posted on 2017-06-14

882 Data-based, synthesis-driven: setting the agenda for computational ecology

Poisot, T.; Labrie, R.; Larson, E.; Rahlin, A.

10.1101/150128 — ecology — Posted on 2017-06-14

883 RecoverY : K-mer based read classification for Y-chromosome specific sequencing and assembly

Rangavittal, S.; Harris, R. S.; Cechova, M.; Tomaszkiewicz, M.; Chikhi, R.; Makova, K.; Medvedev, P.

10.1101/148114 — bioinformatics — Posted on 2017-06-14

884 Evolution and genetics of precocious burrowing behavior in Peromyscus mice

Metz, H. C.; Bedford, N. L.; Pan, L.; Hoekstra, H. E.

10.1101/150243 — animal behavior and cognition — Posted on 2017-06-14

885 High fidelity detection of crop biomass QTL from low-cost imaging in the field

Banan, D.; Paul, R.; Feldman, M. J.; Holmes, M.; Schlake, H.; Baxter, I.; Leakey, A. D. B.

10.1101/150144 — plant biology — Posted on 2017-06-14

886 Discrete anatomical coordinates for speech production and synthesis

Assaneo, M. F.; Ramirez Butavand, D.; Trevisan, M. A.; Mindlin, G. B.

10.1101/148007 — neuroscience — Posted on 2017-06-14

887 Bayesian Comparison of Explicit and Implicit Causal Inference Strategies in Multisensory Heading Perception

Acerbi, L.; Dokka, K.; Angelaki, D. E.; Ma, W. J.

10.1101/150052 — neuroscience — Posted on 2017-06-14

888 In spoken word recognition the future predicts the past

Gwilliams, L.; Linzen, T.; Poeppel, D.; Marantz, A.

10.1101/150151 — neuroscience — Posted on 2017-06-14

889 Evolution of the sex ratio and effective number under gynodioecy and androdioecy

Uyenoyama, M. K.; Takebayashi, N.

10.1101/113605 — evolutionary biology — Posted on 2017-06-14

890 Stability-based sorting: The forgotten process behind (not only) biological evolution

Flegr, J.; Toman, J.

10.1101/149963 — evolutionary biology — Posted on 2017-06-14

891 Human to yeast pathway transplantation: cross-species dissection of the adenine de novo pathway regulatory node

Agmon, N.; Temple, J.; Tang, Z.; Schraink, T.; Baron, M.; Chen, J.; Mita, P.; Martin, J. A.; Tu, B. P.; Yanai, I.; Fenyo, D.; Boeke, J. D.

10.1101/147579 — synthetic biology — Posted on 2017-06-14

892 Leukocyte counts based on site-specific DNA methylation analysis

Frobel, J.; Bozic, T.; Lenz, M.; Uciechowski, P.; Han, Y.; Herwartz, R.; Strathmann, K.; Isfort, S.; Panse, J.; Esser, A.; Birkhofer, C.; Gerstenmaier, U.; Kraus, T.; Rink, L.; Koschmieder, S.; Wagner, W.

10.1101/150110 — molecular biology — Posted on 2017-06-14

893 Parent of Origin Effects on Quantitative Phenotypes in a Founder Population

Mozaffari, S. V.; DeCara, J. M.; Shah, S. J.; Lang, R. M.; Nicolae, D. L.; Ober, C.

10.1101/150185 — genetics — Posted on 2017-06-14

894 Pericyte ontogeny: the use of chimeras to track a cell lineage of diverse germ line origins

Etchevers, H. C.

10.1101/149922 — developmental biology — Posted on 2017-06-14

895 Cell code: the evolving arrangement of molecules that perpetuates life

Jose, A. M.

10.1101/149294 — developmental biology — Posted on 2017-06-14

896 EFA6 regulates selective polarised transport and axon regeneration from the axon initial segment

Eva, R.; Koseki, H.; Kanamarlapudi, V.; Fawcett, J.

10.1101/150037 — cell biology — Posted on 2017-06-14

897 Underwater hyperspectral classification of deep sea corals exposed to a toxic compound

Letnes, P. A.; Hansen, I. M.; Aas, L. M.; Eide, I.; Pettersen, R.; Tassara, L.; Receveur, J.; le Floch, S.; Guyomarch, J.; Camus, L.; Byttingsvik, J.

10.1101/150060 — biochemistry — Posted on 2017-06-14

898 Simultaneous spike-time locking to multiple frequencies

Sinz, F. H.; Sachgau, C.; Henninger, J.; Benda, J.; Grewe, J.

10.1101/149906 — neuroscience — Posted on 2017-06-14

899 A single-cell anatomical blueprint for intracortical information transfer from primary visual cortex

Han, Y.; Kebschull, J. M.; Campbell, R. A. A.; Cowan, D.; Imhof, F.; Zador, A. M.; Mrsic-Flogel, T. D.

10.1101/148031 — neuroscience — Posted on 2017-06-14

900 Recipient-Biased Competition For A Cross-Fed Nutrient Is Required For Coexistence Of Microbial Mutualists

McCully, A. L.; LaSarre, B.; McKinlay, J. B.

10.1101/144220 — microbiology — Posted on 2017-06-14

901 On the relative role of different age groups during influenza A epidemics in Germany, 2002-2017

Goldstein, E.

10.1101/147066 — epidemiology — Posted on 2017-06-14

902 Serology reflects a decline in the prevalence of trachoma in two regions of The Gambia

Migchelsen, S. J.; Sepulveda, N.; Martin, D.; Cooley, G.; Gwyn, S.; Pickering, H.; Joof, H.; Makalo, P.; Bailey, R.; Burr, S. E.; Mabey, D. C. W.; Solomon, A. W.; Roberts, C. h.

10.1101/149237 — epidemiology — Posted on 2017-06-14

903 Transfer entropy as a tool for inferring causality from observational studies in epidemiology

Aziz, N. A.

10.1101/149625 — epidemiology — Posted on 2017-06-14

904 Death of the assumption that "latent period" is fixed over the course of a plant disease epidemic

Frederic, S.

10.1101/148619 — epidemiology — Posted on 2017-06-14

905 An outbreak of Pseudomonas aeruginosa infection linked to a Black Friday piercing event

MacPherson, P.; Valentine, K.; Chadderton, V.; Dardamissis, E.; Doige, I.; Fox, A.; Ghebrehewet, S.; Hampton, T.; Mutton, K.; Sherratt, C.; McCann, C. M.

10.1101/149914 — epidemiology — Posted on 2017-06-14

906 Unintended Consequences and the Paradox of Control: Management of Emerging Pathogens with Age-Specific Virulence

Carran, S.; Ferrari, M.; Reluga, T.

10.1101/149773 — epidemiology — Posted on 2017-06-14

907 A multicenter, randomized study of decitabine as epigenetic priming with induction chemotherapy in children with AML

Gore, L.; Triche, T. J.; Farrar, J. E.; Wai, D.; Legendre, C.; Gooden, G. C.; Liang, W. S.; Carpten, J.; Lee, D. W.; Alvaro, F.; Macy, M. E.; Arndt, C.; Barnette, P.; Cooper, T.; Martin, L.; Narendran, A.; Pollard, J.; Meshinchi, S.; Boklan, J.; Arceci, R. J.; Salhia, B.

10.1101/124263 — clinical trials — Posted on 2017-06-14

908 Simultaneous spike-time locking to multiple frequencies

Sinz, F. H.; Sachgau, C.; Henninger, J.; Benda, J.; Grewe, J.

10.1101/149906 — neuroscience — Posted on 2017-06-14

909 Research Synergy and Drug Development: Bright Stars in Neighboring Constellations

Keserci, S.; Livingston, E. B.; Wan, L.; Pico, A. R.; Chacko, G.

10.1101/149559 — scientific communication and education — Posted on 2017-06-14

910 Intrinsic and Modifiable Contributors to Distal Radius Microstructure, Macrostructure and Strength in Premenopausal Women

Mancuso, M. E.; Johnson, J. E.; Ahmed, S.; Butler, T. A.; Troy, K. L.

10.1101/146258 — physiology — Posted on 2017-06-14

911 The language oscillogenome

Murphy, E.; Benitez-Burraco, A.

10.1101/114033 — neuroscience — Posted on 2017-06-14

912 Distribution and inheritance of a gene cluster encoding a sulfated tyrosine peptide in Xanthomonas spp.

McDonald, M.; Schwessinger, B.; Stewart, V.; Ronald, P.

10.1101/149930 — microbiology — Posted on 2017-06-14

913 Phylogeographic separation and formation of sexually discrete lineages in a global population of Yersinia pseudotuberculosis

Seecharran, T.; Karin-Mantarri, L.; Koskela, K.; Nikari, S.; Dickins, B.; Corander, J.; Skurnik, M.; McNally, A.

10.1101/149468 — microbiology — Posted on 2017-06-14

914 High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell

Michael, T. P.; Jupe, F.; Bemm, F.; Motley, S. T.; Sandoval, J. P.; Loudet, O.; Weigel, D.; Ecker, J. R.

10.1101/149997 — genomics — Posted on 2017-06-14

915 Dissecting the Causal Mechanism of X-Linked Dystonia-Parkinsonism by Integrating Genome and Transcriptome Assembly

Aneichyk, T.; Hendriks, W.; Yadav, R.; Shin, D.; Gao, D.; Vaine, C. A.; Collins, R. L.; Stortchevoi, A.; Currall, B.; Brand, H.; Hanscom, C.; Antolik, C.; Dy, M.; Ragavendran, A.; Acuna, P.; Go, C.; Sapir, Y.; Wainger, B. J.; Henderson, D.; Dhakal, J.; Ito, N.; Weisenfeld, N.; Jaffe, D.; Sharma, N.; Breakefield, X. O.; Ozelius, L. J.; Bragg, D. C.; Talkowski, M. E.

10.1101/149872 — genomics — Posted on 2017-06-14

916 The physical boundaries of public goods cooperation between surface-attached bacterial cells

Weigert, M.; Kümmerli, R.

10.1101/119032 — evolutionary biology — Posted on 2017-06-14

917 An extinct hummingbird species that never was: a cautionary tale about sampling issues in molecular phylogenetics

Perez-Eman, J. L.; Perdigon Ferreira, J.; Gutierrez-Pinto, N.; Cuervo, A. M.; Cespedes, L. N.; Witt, C. C.; Cadena, C. D.

10.1101/149898 — evolutionary biology — Posted on 2017-06-14

918 Fitting mechanistic epidemic models to data: a comparison of simple Markov chain Monte Carlo approaches

Li, M.; Dushoff, J.; Bolker, B. M.

10.1101/110767 — epidemiology — Posted on 2017-06-14

919 Kin competition as driver of range expansions

Van Petegem, K. H. P.; Moerman, F.; Dahirel, M.; Fronhofer, E. A.; Vandegehuchte, M.; Van Leeuwen, T.; Wybouw, N.; Stoks, R.; Bonte, D.

10.1101/150011 — ecology — Posted on 2017-06-14

920 Egr1 deficiency induces browning of inguinal subcutaneous white adipose tissue in mice

Milet, C.; Bleher, M.; Allbright, K.; Orgeur, M.; Coulpier, F.; Duprez, D.; Havis, E.

10.1101/150003 — developmental biology — Posted on 2017-06-14

921 Neural stem cells induce the formation of their physical niche during organogenesis

Seleit, A.; Krämer, I.; Riebesehl, B.; Ambrosio, E. M.; Stolper, J.; Dross, N.; Lischik, C.; Centanin, L.

10.1101/149955 — developmental biology — Posted on 2017-06-14

922 Inferring synteny between genome assemblies: a systematic evaluation

Liu, D.; Hunt, M.; Tsai, I. J.

10.1101/149989 — bioinformatics — Posted on 2017-06-14

923 GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS

Ravasio, V.; Giacopuzzi, E.

10.1101/149146 — bioinformatics — Posted on 2017-06-14

924 K-mer clustering algorithm using a MapReduce framework: application to the parallelization of the Inchworm module of Trinity

Kim, C. S.; Winn, M.; Sachdeva, V.; Jordan, K.

10.1101/149948 — bioinformatics — Posted on 2017-06-14

925 Drosophila Mutants that Are Motile but Respond Poorly to All Stimuli Tested

Vang, L. L.; Adler, J.

10.1101/066423 — animal behavior and cognition — Posted on 2017-06-14

926 Dopamine, Inference, and Uncertainty

Gershman, S. J.

10.1101/149849 — neuroscience — Posted on 2017-06-14

927 Subcortical volume and white matter integrity abnormalities in major depressive disorder: findings from UK Biobank imaging data

Shen, X.; Reus, L.; Adams, M.; Cox, S.; Deary, I.; Liewald, D.; Bastin, M.; Smith, D.; Whalley, H.; McIntosh, A.

10.1101/070912 — neuroscience — Posted on 2017-06-14

928 Enterococcus faecalis and pathogenic streptococci inactivate daptomycin by releasing phospholipids

Ledger, E. V. K.; Pader, V.; Edwards, A. M.

10.1101/149971 — microbiology — Posted on 2017-06-14

929 Dark Control: A Unified Account of Default Mode Function by Control Theory and Reinforcement Learning

Dohmatob, E.; Dumas, G.; Bzdok, D.

10.1101/148890 — neuroscience — Posted on 2017-06-14

930 Saccharomyces cerevisiae strain YH166: a novel wild yeast for the production of tropical fruit sensory attributes in fermented beverages

Osburn, K.; Caputo, R.; Miller, J.; Bochman, M. L.

10.1101/149732 — microbiology — Posted on 2017-06-14

931 Reduced chlorhexidine and daptomycin susceptibility arises in vancomycin-resistant Enterococcus faecium after serial chlorhexidine exposure

Bhardwaj, P.; Hans, A.; Ruikar, K.; Guan, Z.; Palmer, K. L.

10.1101/148809 — microbiology — Posted on 2017-06-14

932 Controlling microbial communities: a theoretical framework

Angulo, M. T.; Moog, C. H.; Liu, Y.-Y.

10.1101/149765 — microbiology — Posted on 2017-06-14

933 Collaborations between CpG sites in DNA methylation

Song, Y.; Ren, H.; Lei, J.

10.1101/149815 — genetics — Posted on 2017-06-14

934 LIONS: Analysis Suite for Detecting and Quantifying Transposable Element Initiated Transcription from RNA-seq

Babaian, A.; Lever, J.; Gagnier, L.; Mager, D. L.

10.1101/149864 — bioinformatics — Posted on 2017-06-14

935 Guanine-nucleotide Exchange Modulator, GIV/Girdin, Serves as a Tunable Valve for Growth Factor-Stimulated Cyclic AMP Signals

Getz, M.; Swanson, L.; Sahoo, D.; Ghosh, P.; Rangamani, P.

10.1101/149781 — systems biology — Posted on 2017-06-13

936 Research Synergy and Drug Development: Bright Stars in Neighboring Constellations

Keserci, S.; Livingston, E. B.; Wan, L.; Pico, A. R.; Chacko, G.

10.1101/149559 — scientific communication and education — Posted on 2017-06-13

937 Drivers of genetic diversity in secondary metabolic gene clusters in a fungal population

Lind, A. L.; Wisecaver, J. H.; Lameiras, C.; Rodrigues, F.; Goldman, G. H.; Rokas, A.

10.1101/149856 — genomics — Posted on 2017-06-13

938 Mutational sequencing for accurate count and long-range assembly

Kumar, V.; Rosenbaum, J.; Wang, Z.; Forcier, T.; Ronemus, M.; Wigler, M.; Levy, D.

10.1101/149740 — genomics — Posted on 2017-06-13

939 Phytoplankton functional types: A trait perspective

Irwin, A. J.; Finkel, Z.

10.1101/148312 — ecology — Posted on 2017-06-13

940 The likelihood of heterogeneity or additional mutation in KRAS or associated oncogenes to compromise targeting of oncogenic KRAS G12C

Cannataro, V. L.; Gaffney, S. G.; Stender, C.; Zhao, Z.-M.; Philips, M.; Greenstein, A.; Townsend, J. P.

10.1101/149724 — cancer biology — Posted on 2017-06-13

941 The polyploid state plays a tumor suppressive role in the liver

Zhang, S.; Zhou, K.; Luo, X.; Li, L.; Nguyen, L.; Zhang, Y.; Tarlow, B.; Siegwart, D.; Zhu, H.

10.1101/149799 — cancer biology — Posted on 2017-06-13

942 Standing balance assessment using a head-mounted wearable device

Salisbury, J. P.; Keshav, N. U.; Sossong, A. D.; Sahin, N. T.

10.1101/149831 — bioengineering — Posted on 2017-06-13

943 Conserved lipid and small molecule modulation of COQ8 reveals regulation of the ancient UbiB family

Reidenbach, A.; Kemmerer, Z.; Aydin, D.; Jochem, A.; McDevitt, M.; Hutchins, P.; Wilkerson, E.; Stark, J.; Stefely, J.; Johnson, I.; Bingman, C.; Markley, J.; Coon, J.; Dal Peraro, M.; Pagliarini, D.

10.1101/149823 — biochemistry — Posted on 2017-06-13

944 T-dependent B cell responses to Plasmodium induce antibodies that form a high-avidity multivalent complex with the circumsporozoite protein

Fisher, C. R.; Sutton, H. J.; Kaczmarski, J. A.; McNamara, H. A.; Clifton, B.; Mitchell, J.; Cai, Y.; Dups, J. N.; D'Arcy, N. J.; Singh, M.; Chuah, A.; Peat, T.; Jackson, C. J.; Cockburn, I. A.

10.1101/108746 — immunology — Posted on 2017-06-13

945 SNP-based heritability estimation: measurement noise, population stratification, and stability

Gamazon, E. R.; Park, D. S.

10.1101/040055 — genomics — Posted on 2017-06-13

946 N-(3-Oxododecanoyl)-L-Homoserine Lactone Interactions In The Breast Tumor Microenvironment: Implications For Breast Cancer Viability And Proliferation In Vitro

Balhouse, B. N.; Patterson, L.; Schmelz, E. M.; Slade, D. J.; Verbridge, S. S.

10.1101/132092 — cancer biology — Posted on 2017-06-13

947 Post-translational regulation of metabolism in fumarate hydratase deficient cancer cells

Goncalves, E.; Sciacovelli, M.; Costa, A. S. H.; Johnson, T. I.; Machado, D.; Frezza, C.; Saez-Rodriguez, J.

10.1101/149716 — systems biology — Posted on 2017-06-13

948 Sparse genetic tracing reveals regionally specific functional organization of mammalian nociceptors

Olson, W.; Abdus-Saboor, I.; Cui, L.; Burdge, J.; Raabe, T.; Ma, M.; Luo, W.

10.1101/149641 — neuroscience — Posted on 2017-06-13

949 Resolving neuronal population code and coordination withgradient boosted trees

Viejo, G.; Cortier, T.; Peyrache, A.

10.1101/148643 — neuroscience — Posted on 2017-06-13

950 tDCS changes in motor excitability are specific to orientation of current flow

Rawji, V.; Ciocca, M.; Zacharia, A.; Soares, D.; Truong, D.; Bikson, M.; Rothwell, J.; Bestmann, S.

10.1101/149633 — neuroscience — Posted on 2017-06-13

951 High levels of antibiotic tolerance and persistence are induced by the commercial anti-microbial triclosan

Westfall, C. S.; Levin, P. A.

10.1101/090829 — microbiology — Posted on 2017-06-13

952 Unusual Sulfur Requirements During Laboratory Growth of Luteibacter

Baltrus, D. A.

10.1101/149401 — microbiology — Posted on 2017-06-13

953 Statistical Correction of the Winner’s Curse Explains Replication Variability in Quantitative Trait Genome-Wide Association Studies

Palmer, C.; Pe'er, I.

10.1101/104786 — genomics — Posted on 2017-06-13

954 Mutational signatures of DNA mismatch repair deficiency in C. elegans and human cancers

Meier, B.; Volkova, N.; Hong, Y.; Schofield, P.; Campbell, P. J.; Gerstung, M.; Gartner, A.

10.1101/149153 — genomics — Posted on 2017-06-13

955 Non-Parametric Genetic Prediction of Complex Traits with Latent Dirichlet Process Regression Models

Zeng, P.; Zhou, X.

10.1101/149609 — genetics — Posted on 2017-06-13

956 The emergence of words from vocal imitations

Edmiston, P.; Lupyan, G.; Perlman, M.

10.1101/149708 — evolutionary biology — Posted on 2017-06-13

957 Pleistocene climate change and the formation of regional species pools

Calatayud, J.; Rodriguez, M. A.; Molina-Venegas, R.; Leo, M.; Hortal, J.

10.1101/149617 — ecology — Posted on 2017-06-13

958 Comprehensive characterization of pediatric acute myeloid leukemia reveals novel molecular features and age-specific interactions

Bolouri, H.; Farrar, J. E.; Triche, T. J.; Ries, R. E.; Lim, E. L.; Alonzo, T. A.; Ma, Y.; Moore, R.; Mungall, A.; Marra, M. A.; Zhang, J.; Ma, X.; Liu, Y.; Liu, Y.; Guidry Auvil, J. M.; Davidsen, T. M.; Gesuwan, P.; Hermida, L. C.; Salhia, B.; Capone, S.; Ramsingh, G.; Zwaan, C. M.; Noort, S.; Piccolo, S.; Kolb, E. A.; Gamis, A. S.; Smith, M. A.; Gerhard, D. S.; Meshinchi, S.

10.1101/125609 — cancer biology — Posted on 2017-06-13

959 Differing strategies used by motor neurons and glia to achieve robust development of an adult neuropil in Drosophila

Enriquez, J.; Quintana Rio, L.; Blazeski, R.; Mason, C.; Mann, R. S.

10.1101/149229 — neuroscience — Posted on 2017-06-13

960 Metabolic roles of uncultivated bacterioplankton lineages in the northern Gulf of Mexico "Dead Zone"

Thrash, J. C.; Seitz, K. W.; Baker, B. J.; Temperton, B.; Gillies, L. E.; Rabalais, N. N.; Henrissat, B.; Mason, O. U.

10.1101/095471 — microbiology — Posted on 2017-06-13

961 Multiuse patient monitoring equipment as a risk factor for acquisition of Candida auris

Madder, H.; Moir, I.; Moroney, R.; Butcher, L.; Newnham, R.; Sunderland, M.; Clarke, T.; Foster, D.; Hoffman, P.; Moore, G.; Brown, C. S.; Jeffery, K. J. M.

10.1101/149054 — microbiology — Posted on 2017-06-13

962 eIF4A is stimulated by the pre-initiation complex and enhances recruitment of mRNAs regardless of structural complexity

Yourik, P.; Aitken, C. E.; Zhou, F.; Gupta, N.; Hinnebusch, A. G.; Lorsch, J. R.

10.1101/147959 — biophysics — Posted on 2017-06-13

963 Removal Of Inhibition Uncovers Latent Movement Potential During Preparation

Jagadisan, U. K.; Gandhi, N. J.

10.1101/138925 — neuroscience — Posted on 2017-06-13

964 A Complete Electron Microscopy Volume Of The Brain Of Adult Drosophila melanogaster

Zheng, Z.; Lauritzen, J. S.; Perlman, E.; Robinson, C. G.; Nichols, M.; Milkie, D.; Torrens, O.; Price, J.; Fisher, C. B.; Sharifi, N.; Calle-Schuler, S. A.; Kmecova, L.; Ali, I. J.; Karsh, B.; Trautman, E. T.; Bogovic, J.; Hanslovsky, P.; Jefferis, G. S. X. E.; Kazhdan, M.; Khairy, K.; Saalfeld, S.; Fetter, R. D.; Bock, D. D.

10.1101/140905 — neuroscience — Posted on 2017-06-13

965 Seed size and its rate of evolution correlate with species diversification across angiosperms

Igea, J.; Miller, E. F.; Papadopulos, A. S.; Tanentzap, A. J.

10.1101/053116 — evolutionary biology — Posted on 2017-06-13

966 Cancer Genome Interpreter Annotates The Biological And Clinical Relevance Of Tumor Alterations

10.1101/140475 — cancer biology — Posted on 2017-06-13

967 Structural-mechanical remodelling of GDP-microtubules by kinesin

Peet, D. R.; Burroughs, N. J.; Cross, R. A.

10.1101/101022 — biophysics — Posted on 2017-06-13

968 Intrinsically disordered regions contribute promiscuous interactions to RNP granule assembly

Protter, D. S. W.; Rao, B. S.; Van Treeck, B.; Lin, Y.; Mizoue, L.; Rosen, M. K.; Parker, R.

10.1101/147561 — biochemistry — Posted on 2017-06-13

969 Simple, single-step, and scar-free mutagenesis of bacterial genes

Nasvall, J.

10.1101/149534 — synthetic biology — Posted on 2017-06-13

970 Synaptic mechanisms of interference in working memory

Kilpatrick, Z. P.

10.1101/149435 — neuroscience — Posted on 2017-06-13

971 Beyond Consensus: Embracing Heterogeneity in Neuroimaging Meta-Analysis

Ngo, G. H.; Eickhoff, S. B.; Fox, P. T.; Spreng, R. N.; Yeo, B. T. T.

10.1101/149567 — neuroscience — Posted on 2017-06-13

972 A functional role for the epigenetic regulator ING1 in activity-induced gene expression in primary cortical neurons

Leighton, L.; Zhao, Q.; Li, X.; Dai, C.; Marshall, P. R.; Liu, S.; Wang, Y.; Zajaczkowski, E. L.; Khandelwal, N.; Kumar, A.; Bredy, T. W.; Wei, W.

10.1101/149450 — neuroscience — Posted on 2017-06-13

973 Genetic networks of the oxytocin system in the human brain: A gene expression and large-scale fMRI meta-analysis study

Quintana, D. S.; Rokicki, J.; van der Meer, D.; Alnaes, D.; Kaufmann, T.; Palomera, A. C.; Dieset, I.; Andreassen, O. A.; Westlye, L. T.

10.1101/149526 — neuroscience — Posted on 2017-06-13

974 Low-cost HPV testing and the prevalence of cervical infection in asymptomatic populations in Guatemala

Lou, H.; Gharzouzi, E.; Guerra, S. P.; Domgue, J. F.; Sawitzke, J.; Villagran, G.; Garland, L.; Boland, J.; Wagner, S.; Martinez, J.; Rosas, H.; Troxler, J.; McMillen, H.; Kessing, B.; Alvirez, E.; Castillo, M.; Morales, H.; Argueta, V.; Rosingh, A.; van Aerde-van Nunen, F. J. H. B.; Lopez, G.; Schiffman, M.; Dean, M.; Orozco, R.

10.1101/134775 — molecular biology — Posted on 2017-06-13

975 Selective constraints on coding sequences of nervous system genes are a major determinant of duplicate gene retention in vertebrates

Roux, J.; Liu, J.; Robinson-Rechavi, M.

10.1101/072959 — evolutionary biology — Posted on 2017-06-13

976 Co-evolution of virulence and immunosuppression through multiple infections

Kamiya, T.; Mideo, N.; Alizon, S.

10.1101/149211 — evolutionary biology — Posted on 2017-06-13

977 An optimized pipeline for parallel image-based quantification of gene expression and genotyping after in situ hybridization

Dobrzycki, T.; Krecsmarik, M.; Bonkhofer, F.; Patient, R. K.; Monteiro, R.

10.1101/149591 — developmental biology — Posted on 2017-06-13

978 Syndecan functions to regulate Wnt-dependent axon guidance in C. elegans

Hartin, S. N.; Kurland, M. E.; Ackley, B. D.

10.1101/046094 — cell biology — Posted on 2017-06-13

979 Predicting DNA Hybridization Kinetics from Sequence

Zhang, J. X.; Fang, J. Z.; Duan, W.; Wu, L.; Zhang, A.; Dalchau, N.; Yordanov, B.; Petersen, R.; Phillips, A.; Zhang, D.

10.1101/149427 — biophysics — Posted on 2017-06-13

980 Compositional Mediation Analysis for Microbiome Studies

Sohn, M. B.; Li, H.

10.1101/149419 — bioinformatics — Posted on 2017-06-13

981 NetMHCpan 4.0: Improved peptide-MHC class I interaction predictions integrating eluted ligand and peptide binding affinity data

Jurtz, V. I.; Paul, S.; Andreatta, M.; Marcatili, P.; Peters, B.; Nielsen, M.

10.1101/149518 — bioinformatics — Posted on 2017-06-13

982 Dissecting super-enhancer hierarchy based on chromatin interactions

Huang, J.; Li, K.; Cai, W.; Liu, X.; Zhang, Y.; Orkin, S. H.; Xu, J.; Yuan, G.-C.

10.1101/149583 — bioinformatics — Posted on 2017-06-13

983 Non-latching positive feedback enables robust bimodality by de-coupling expression noise from the mean

Razooky, B. S.; Cao, Y.; Perelson, A. S.; Simpson, M. L.; Weinberger, L. S.

10.1101/144964 — systems biology — Posted on 2017-06-13

984 Revisiting the General Concept of Network Centralities: A Propose for Centrality Analysis in Network Science

Ashtiani, M.; Mirzaie, M.; Razaghi-Moghadam, Z.; Hennig, H.; Wolkenhauer, O.; Salehzadeh-Yazdi, A.; Jafari, M.

10.1101/149492 — systems biology — Posted on 2017-06-13

985 Phylogeographic separation and formation of sexually discreet lineages in a global population of Yersinia pseudotuberculosis

Seecharran, T.; Karin-Mantarri, L.; Koskela, K.; Nikari, S.; Dickins, B.; Corander, J.; Skurnik, M.; McNally, A.

10.1101/149468 — microbiology — Posted on 2017-06-13

986 Challenges in estimating heritability of phase polyphenism: Insights from measured and simulated data in the desert locust

Jourdan-Pineau, H.; Pelissie, B.; Chapuis, E.; Chardonnet, F.; Pages, C.; Foucart, A.; Blondin, L.; Piou, C.; Chapuis, M.-P.

10.1101/149542 — evolutionary biology — Posted on 2017-06-13

987 A synthetic oligo library and sequencing approach reveals an insulation mechanism encoded within bacterial σ54 promoters

Levy, L.; Anavy, L.; Solomon, O.; Cohen, R.; Brunwasser-Meirom, M.; Ohayon, S.; Atar, O.; Goldberg, S.; Yakhini, Z.; Amit, R.

10.1101/086108 — systems biology — Posted on 2017-06-13

988 The Healthy Brain Network Biobank: An open resource for transdiagnostic research in pediatric mental health and learning disorders

Alexander, L. M.; Escalera, J.; Ai, L.; Andreotti, C.; Febre, K.; Mangone, A.; Vega Potler, N.; Langer, N.; Alexander, A.; Kovacs, M.; Litke, S.; O'Hagan, B.; Bronstein, B.; Bui, A.; Bushey, M.; Castagna, V.; Camacho, N.; Chan, E.; Citera, D.; Clucas, J.; Cohen, S.; Eaves, M.; Fradera, B.; Grant-Villegas, N.; Green, G.; Gregory, C.; Hart, E.; Harris, S.; Lord, C.; Kahn, D.; Kabotyanski, K.; Kleinman, K.; Koo, B.; Kramer, E.; Margolis, A.; Merikangas, K.; Milham, J.; Minniti, G.; Neuhaus, R.; Nussbaum, A.; Osman, Y.; Parra, L.; Pugh, K. R.; Racanello, A.; Restrepo, A.; Saltzman, T.; Septimus, B

10.1101/149369 — neuroscience — Posted on 2017-06-13

989 Epigenetic maintenance of DNA methylation after evolutionary loss of the de novo methyltransferase

Catania, S.; Dumesic, P. A.; Stoddard, C.; Cooke, S.; Burke, J.; Cuomo, C. A.; Narlikar, G. J.; Madhani, H. D.

10.1101/149385 — molecular biology — Posted on 2017-06-13

990 Unusual Sulfur Requirements During Laboratory Growth of Leutibacter

Baltrus, D. A.

10.1101/149401 — microbiology — Posted on 2017-06-13

991 Mosquito lipids regulate Plasmodium sporogony and infectivity to the mammalian host

Costa, G.; Eldering, M.; Lindquist, R. L.; Hauser, A. E.; Sauerwein, R.; Goosmann, C.; Brinkmann, V.; Levashina, E. A.

10.1101/149443 — microbiology — Posted on 2017-06-13

992 Convergence of topological domain boundaries, insulators, and polytene interbands revealed by high-resolution mapping of chromatin contacts in the early Drosophila melanogaster embryo

Stadler, M. R.; Haines, J. E.; Eisen, M. B.

10.1101/149344 — genomics — Posted on 2017-06-13

993 A multi-parent advanced generation inter-cross population for genetic analysis of multiple traits in cowpea (Vigna unguiculata L. Walp.)

Huynh, B.-L.; Ehlers, J. D.; Munoz-Amatriain, M.; Lonardi, S.; Santos, J. R. P.; Ndeve, A.; Batieno, B. J.; Boukar, O.; Cisse, N.; Drabo, I.; Fatokun, C.; Kusi, F.; Agyare, R. Y.; Guo, Y.-N.; Herniter, I.; Lo, S.; Wanamaker, S. I.; Close, T. J.; Roberts, P. A.

10.1101/149476 — genetics — Posted on 2017-06-13

994 Faster carbon accumulation in global forest soils

Zhang, W.; Chen, Y.; Shi, L.; Wang, X.; Liu, Y.; Rao, X.; Lin, Y.; Shao, Y.; Li, X.; Liu, S.; Piao, S.; Zhu, W.; Zou, X.; Fu, S.

10.1101/149393 — ecology — Posted on 2017-06-13

995 Akt/PKB enhances non-canonical Wnt signals by compartmentalizing β-Catenin

Aznar, N.; Sun, N.; Dunkel, Y.; Ear, J.; Buschman, M.; Ghosh, P.

10.1101/149351 — cell biology — Posted on 2017-06-13

996 A vacuum-actuated microtissue stretcher for long-term exposure to oscillatory strain within a 3D matrix

Walker, M. J.; Godin, M.; Pelling, A.

10.1101/149336 — bioengineering — Posted on 2017-06-13

997 Low Rate of Somatic Mutations in a Long-Lived Oak Tree

Sarkar, N.; Schmid-Siegert, E.; Iseli, C.; Calderon, S.; Gouhier-Darimont, C.; Chrast, J.; Cattaneo, P.; Schutz, F.; Farinelli, L.; Pagni, M.; Schneider, M.; Voumard, J.; Jaboyedoff, M.; Fankhauser, C.; Hardtke, C. S.; Keller, L.; Pannell, J. R.; Reymond, A.; Robinson-Rechavi, M.; Xenarios, I.; Reymond, P.

10.1101/149203 — plant biology — Posted on 2017-06-13

998 vqtl: An R package for Mean-Variance QTL Mapping

Corty, R. W.; Valdar, W.

10.1101/149377 — genetics — Posted on 2017-06-13

999 A genome-wide polygenic approach to HIV uncovers link to inflammatory bowel disease and identifies potential novel genetic variants

Power, R. A.; Thorball, C. W.; Bartha, I.; Perry, J. R. B.; McLaren, P. J.; de Oliveira, T.; Fellay, J.

10.1101/145383 — genomics — Posted on 2017-06-12

1000 Convergence of Wnt, Growth Factor and Trimeric G protein signals on Daple

Aznar, N.; Dunkel, Y.; Sun, N.; Satterfield, K.; He, F.; Lopez-Sanchez, I.; Ghassemian, M.; Sahoo, D.; Kufareva, I.; Ghosh, P.

10.1101/137125 — cancer biology — Posted on 2017-06-12

1001 Modeling heterogeneous populations using Boolean networks

Ross, B. C.; Boguslav, M.; Weeks, H.; Costello, J.

10.1101/110817 — systems biology — Posted on 2017-06-12

1002 An elective course for medical students on innovation and entrepreneurship

Reinertsen, E.; Mohan, A.; Fusaro, A.

10.1101/148569 — scientific communication and education — Posted on 2017-06-12

1003 Metabolic roles of uncultivated bacterioplankton lineages in the northern Gulf of Mexico "Dead Zone"

Thrash, J. C.; Seitz, K. W.; Baker, B. J.; Temperton, B.; Gillies, L. E.; Rabalais, N. N.; Henrissat, B.; Mason, O. U.

10.1101/095471 — microbiology — Posted on 2017-06-12

1004 A Growing Microcolony can Survive and Support Persistent Propagation of Virulent Phages

Eriksen, R. S.; Svenningsen, S.; Sneppen, K.; Mitarai, N.

10.1101/149062 — microbiology — Posted on 2017-06-12

1005 Regional missense constraint improves variant deleteriousness prediction

Samocha, K. E.; Kosmicki, J. A.; Karczewski, K. J.; O'Donnell-Luria, A. H.; Pierce-Hoffman, E.; MacArthur, D. G.; Neale, B. M.; Daly, M. J.

10.1101/148353 — genomics — Posted on 2017-06-12

1006 Naproxen inhibits CSD-evoked meningeal afferent mechanosensitization but not prolonged activation: a role for cortical oligemia and hypoxia?

Zhao, J.; Levy, D.

10.1101/149278 — neuroscience — Posted on 2017-06-12

1007 Splicing-dependent NMD requires Prp17 in Saccharomyces cerevisiae

Wen, J.; Marzi, L.; Wang, J.; Ye, J.; Brogna, S.

10.1101/149245 — molecular biology — Posted on 2017-06-12

1008 DRUID: A pipeline for reproducible transcriptome-wide measurements of mRNA stability

Lugowski, A.; Nicholson, B.; Rissland, O. S.

10.1101/149195 — molecular biology — Posted on 2017-06-12

1009 Parallel epigenetic modifications induced by hatchery rearing in a Pacific Salmon

Le Luyer, J.; Laporte, M.; Beacham, T. D.; Kaukinen, K. H.; Withler, R. E.; Leong, J. S.; Rondeau, E. B.; Koop, B. F.; Bernatchez, L.

10.1101/148577 — genomics — Posted on 2017-06-12

1010 To include or not to include: The impact of gene filtering on species tree estimation methods

Molloy, E.; Warnow, T.

10.1101/149120 — evolutionary biology — Posted on 2017-06-12

1011 Co-evolution of virulence and immunosuppression through multiple infections

Kamiya, T.; Mideo, N.; Alizon, S.

10.1101/149211 — evolutionary biology — Posted on 2017-06-12

1012 Patterns of divergence across the geographic and genomic landscape of a butterfly hybrid zone associated with a climatic gradient

Ryan, S.; Fontaine, M. C.; Scriber, J. M.; Pfrender, M. E.; O'Neil, S. T.; Hellmann, J. J.

10.1101/149179 — evolutionary biology — Posted on 2017-06-12

1013 Tumor subclonal progression model for cancer hallmark acquisition

Matsui, Y.; Miyano, S.; Shimamura, T.

10.1101/149252 — bioinformatics — Posted on 2017-06-12

1014 DeepARG: A deep learning approach for predicting antibiotic resistance genes from metagenomic data

Arango-Argoty, G. A.; Garner, E.; Pruden, A.; Heath, L. S.; Vikesland, P.; Zhang, L.

10.1101/149328 — bioinformatics — Posted on 2017-06-12

1015 Predicting double-strand DNA breaks using epigenome marks or DNA at kilobase resolution

Mourad, R.; Cuvier, O.

10.1101/149039 — bioinformatics — Posted on 2017-06-12

1016 Neurodynamics and connectivity during facial fear perception: The role of threat exposure and signal congruity

Cushing, C.; Im, H. Y.; Adams, R. B.; Ward, N.; Albohn, D. N.; Steiner, T. G.; Kveraga, K.

10.1101/149112 — neuroscience — Posted on 2017-06-12

1017 Effects of Prenatal Stress on Structural Brain Development and Aging in Humans

Franke, K.; van den Bergh, B.; de Rooij, S. R.; Roseboom, T. J.; Nathanielsz, P. W.; Witte, O. W.; Schwab, M.

10.1101/148916 — neuroscience — Posted on 2017-06-12

1018 The cavity method for community ecology

Barbier, M.; Arnoldi, J.-F.

10.1101/147728 — ecology — Posted on 2017-06-12

1019 Mitochondrial-nuclear interactions maintain geographic separation of deeply diverged mitochondrial lineages in the face of nuclear gene flow

Morales, H. E.; Pavlova, A.; Amos, N.; Major, R.; Kilian, A.; Greening, C.; Sunnucks, P.

10.1101/095596 — evolutionary biology — Posted on 2017-06-12

1020 Identification Of A Native Novel Oncolytic Immunoglobulin On Exfoliated Colon Epithelial Cells: A Bispecific Heterodimeric Chimera Of IgA/IgG

Albaugh, G. P.; Dutta, S. K.; Iyengar, V.; Shami, S.; Lohani, A.; Sainz, E.; Kessie, G.; Nair, P.; Lagerholm, S.; Kamra, A.; Chen, J.-H. J.; Kalavapudi, S.; Shores, R. L.; Phillips, L.; Nair, R.; Nair, P. P.

10.1101/140673 — cell biology — Posted on 2017-06-12

1021 Comprehensive analysis of RNA-sequencing to find the source of 1 trillion reads across diverse adult human tissues

Mangul, S.; Yang, H. T.; Strauli, N.; Gruhl, F.; Porath, H.; Hsieh, K.; Chen, L.; Daley, T.; Christenson, S.; Wesolowska Andersen, A.; Spreafico, R.; Rios, C.; Eng, C.; Smith, A. D.; Hernandez, R. D.; Ophoff, R. A.; Santana, J. R.; Levanon, E.; Woodruff, P. G.; Burchard, E.; Seibold, M. A.; Shifman, S.; Eskin, E.; Zaitlen, N.

10.1101/053041 — genomics — Posted on 2017-06-12

1022 A group of nuclear factor Y transcription factors are likely sub-functionalized in the endosperm development of rice and other monocots

E, Z.; Li, T.; Zhang, H.; Liu, Z.; Deng, H.; Wang, L.; Wei, X.; Niu, B.; Chen, C.

10.1101/149047 — plant biology — Posted on 2017-06-12

1023 The mismeasure of (obese) man - body mass index is an inadequate indicator of body condition

Kratochvil, L.; Flegr, J.

10.1101/149088 — physiology — Posted on 2017-06-12

1024 Neural Activity in the Fronto-Parietal Multiple Demand Network Robustly Predicts Individual Differences In Working Memory And Fluid Intelligence

Assem, M.; Mineroff, Z. A.; Blank, I. A.; Ademoglu, A.; Fedorenko, E.

10.1101/110270 — neuroscience — Posted on 2017-06-12

1025 Analytical solution of a bilateral Brown-type central pattern generator for symmetric and asymmetric locomotion

Sobinov, A.; Yakovenko, S.

10.1101/146993 — neuroscience — Posted on 2017-06-12

1026 Genetics and epigenetic alterations of hexaploid early generation derived from hybrid between Brassica napus and B. oleracea

Li, Q.; Xiong, Z.; Mei, J.; Song, H.; Qian, W.

10.1101/148940 — genetics — Posted on 2017-06-12

1027 Spatial resource heterogeneity increases diversity and evolutionary potential

Dolson, E.; Perez, S.; Olson, R.; Ofria, C.

10.1101/148973 — ecology — Posted on 2017-06-12

1028 Visualizing Long-Term Single-Molecule Dynamics in vivo by Stochastic Protein Labeling

Liu, H.; Dong, P.; Ioannou, M. S.; Li, L.; Shea, J.; Pasolli, A.; Grimm, J.; Rivlin, P.; Lavis, L. D.; Koyama, M.; Liu, Z.

10.1101/116186 — biophysics — Posted on 2017-06-12

1029 Repeat aware evaluation of scaffolding tools

Mandric, I.; Knyazev, S.; Zelikovsky, A.

10.1101/148932 — bioinformatics — Posted on 2017-06-12

1030 Critical Assessment of Metagenome Interpretation - a benchmark of computational metagenomics software

Sczyrba, A.; Hofmann, P.; Belmann, P.; Koslicki, D.; Janssen, S.; Droege, J.; Gregor, I.; Majda, S.; Fiedler, J.; Dahms, E.; Bremges, A.; Fritz, A.; Garrido-Oter, R.; Sparholt Jorgensen, T.; Shapiro, N.; Blood, P. D.; Gurevich, A.; Bai, Y.; Turaev, D.; DeMaere, M. Z.; Chikhi, R.; Nagarajan, N.; Quince, C.; Meyer, F.; Balvociute, M.; Hestbjerg Hansen, L.; Sorensen, S. J.; Chia, B. K. H.; Denis, B.; Froula, J. L.; Wang, Z.; Egan, R.; Kang, D. D.; Cook, J. J.; Deltel, C.; Beckstette, M.; Lemaitre, C.; Peterlongo, P.; Rizk, G.; Lavenier, D.; Wu, Y.-W.; Singer, S. W.; Jain, C.; Strous, M.; Klingenb

10.1101/099127 — bioinformatics — Posted on 2017-06-12

1031 Parallel Computing to Speed up Whole-Genome Bayesian Regression Analyses Using Orthogonal Data Augmentation

Cheng, H.; Fernando, R.; Garrick, D.

10.1101/148965 — genetics — Posted on 2017-06-12

1032 Design Principle of Lysis/Lysogeny Decision vis-a-vis Multiplicity of Infection

Wadhwa, D.

10.1101/146308 — systems biology — Posted on 2017-06-12

1033 Meiotic Crossover Patterning In The Absence Of ATR: Loss Of Interference And Assurance But Not The Centromere Effect

Brady, M. M.; McMahan, S.; Sekelsky, J.

10.1101/143651 — genetics — Posted on 2017-06-12

1034 CRISPR/Cas9 Mutation Of A Gonad-Expressed Opsin Prevents Jellyfish Light-Induced Spawning

Quiroga Artigas, G.; Lapebie, P.; Leclere, L.; Takeda, N.; Deguchi, R.; Jekely, G.; Momose, T.; Houliston, E.

10.1101/140210 — evolutionary biology — Posted on 2017-06-12

1035 The creation and selection of mutations resistant to a gene drive over multiple generations in the malaria mosquito

Hammond, A. M.; Kyrou, K.; Bruttini, M.; North, A.; Galizi, R.; Karlsson, X.; Carpi, F.; D'Aurizio, R.; Crisanti, A.; Nolan, T.

10.1101/149005 — evolutionary biology — Posted on 2017-06-12

1036 Cell type boundaries organize plant development

Caggiano, M. P.; Yu, X.; Bhatia, N.; Larsson, A.; Ram, H.; Ohno, C. K.; Sappl, P.; Meyerowitz, E. M.; Jönsson, H.; Heisler, M. G.

10.1101/126466 — developmental biology — Posted on 2017-06-12

1037 The effects of mutational process and selection on driver mutations across cancer types

Temko, D.; Tomlinson, I.; Severini, S.; Schuster-Boeckler, B.; Graham, T.

10.1101/149096 — cancer biology — Posted on 2017-06-12

1038 Cooperative Binding Mitigates the High-Dose HookEffect

Dutta Roy, R.; Rosenmund, C.; Stefan, M. I.

10.1101/021717 — biochemistry — Posted on 2017-06-12

1039 Systematic misperceptions of 3D motion explained by Bayesian inference

Rokers, B.; Fulvio, J.; Pillow, J.; Cooper, E.

10.1101/149104 — neuroscience — Posted on 2017-06-12

1040 Mitochondrial DNA SNPs associated with Schizophrenia exhibit Highly Variable Inter-allelic Haplogroup Affiliation and Nuclear Genogeographic Affinity: Bi-Genomic Linkage Disequilibrium raises Major Concerns for Link to Disease

Hagen, C. M.; Goncalves, V. F.; Hedley, P. L.; Bybjerg-Grauholm, J.; Baekvad-Hansen, M.; Hansen, C. S.; Kanters, J.; Nielsen, J.; Mors, O.; Demur, A. B.; Als, T. D.; Nordentoft, M.; Borglum, A.; Mortensen, P. B.; Kennedy, J.; Werge, T.; Hougaard, D.; Christiansen, M.

10.1101/149070 — genomics — Posted on 2017-06-12

1041 Ancestral genome reconstruction reveals the history of ecological diversification in Agrobacterium.

Lassalle, F.; Planel, R.; Penel, S.; Chapulliot, D.; Barbe, V.; Dubost, A.; Calteau, A.; Vallenet, D.; Mornico, D.; Bigot, T.; Gueguen, L.; Vial, L.; Muller, D.; Daubin, V.; Nesme, X.

10.1101/034843 — evolutionary biology — Posted on 2017-06-12

1042 Interaction of N-3-oxododecanoyl homoserine lactone with transcriptional regulator LasR of Pseudomonas aeruginosa: Insights from molecular docking and dynamics simulations

Grabski, H.; Hunanyan, L.; Tiratsuyan, S.; Vardapetyan, H.

10.1101/121681 — bioinformatics — Posted on 2017-06-12

1043 A Rational Drug Combination Design Proves to Inhibit Epithelial-Mesenchymal Transition in a Three-Dimensional Microenvironment

Barneh, F.; Mirzaie, M.; Nickchi, P.; Piran, M.; Salimi, M.; Goshadrou, F.; Aref, A. R.; Jafari, M.

10.1101/148767 — systems biology — Posted on 2017-06-12

1044 Variable sensitivity to DNA damaging chemotherapeutic modulated by cell type-dependent bimodal p53 dynamics

Yang, R.; Huang, B.; Zhu, Y.; Li, Y.; Liu, F.; Shi, J.

10.1101/149013 — systems biology — Posted on 2017-06-12

1045 Visual experience shapes the neural networks remapping touch into external space

Crollen, V.; Lazzouni, L.; Rezk, M.; Bellemare, A.; Lepore, F.; Collignon, O.

10.1101/149021 — neuroscience — Posted on 2017-06-12

1046 Rapid Detection of Sepsis using CESDA: the Caenorabditis elegans Sepsis Detection Assay

Tee, L. F.; Tan, T. L.; Neoh, H.-m.; Jamal, R.

10.1101/144873 — microbiology — Posted on 2017-06-12

1047 Characterization of polymorphisms in Plasmodium falciparum artemisinin resistance marker kelch13 in asymptomatic infections in a rural area of Cameroon

Safeukui, I.; Fru-Cho, J.; Mbengue, A.; Suresh, N.; Njimoh, D. L.; Bumah, V. V.; Nkuo-Akenji, T.; Titanji, V. P. K.; Haldar, K.

10.1101/148999 — microbiology — Posted on 2017-06-12

1048 Comprehensive genome and transcriptome analysis reveals genetic basis for gene fusions in cancer

Fonseca, N. A.; He, Y.; Greger, L.; - PCAWG-3, ; Brazma, A.; Zhang, Z.

10.1101/148684 — genetics — Posted on 2017-06-12

1049 The creation and selection of mutations resistant to a gene drive over multiple generations in the malaria mosquito

Hammond, A. M.; Kyrou, K.; Bruttini, M.; North, A.; Galizi, R.; Karlsson, X.; Carpi, F.; D'Aurizio, R.; Crisanti, A.; Nolan, T.

10.1101/149005 — evolutionary biology — Posted on 2017-06-12

1050 An anti-cancer binary system activated by bacteriophage HK022 Integrase

Elias, A.; Spector, I.; Gritsenko, N.; Zilberstein, Y.; Gorovits, R.; Prag, G.; Kolot, M.

10.1101/147736 — cancer biology — Posted on 2017-06-12

1051 The Ras-like GTPase Rem2 is a potent endogenous inhibitor of calcium/calmodulin-dependent kinase II activity

Royer, L.; Herzog, J. J.; Kenny, K.; Tzvetkova, B.; Cochrane, J. C.; Marr, M. T.; Paradis, S.

10.1101/148981 — biochemistry — Posted on 2017-06-12

1052 Fluctuations of fMRI activation patterns reveal theta-band dynamics of visual object priming

Guo, B.; Lu, Z.; Goold, J. E.; Luo, H.; Meng, M.

10.1101/148635 — neuroscience — Posted on 2017-06-12

1053 Saccharomyces cerevisiae as a platform for assessing sphingolipid kinase inhibitors

Kharel, Y.; Agah, S.; Mendelson, A. J.; Eletu, O. T.; Gesualdi, J.; Smith, J. S.; Santos, W. L.; Lynch, K. R.

10.1101/148858 — biochemistry — Posted on 2017-06-11

1054 A DNA Contact Map for the Mouse Runx1 Gene Identifies Novel Hematopoietic Enhancers

Marsman, J.; Thomas, A.; Osato, M.; O'Sullivan, J. M.; Horsfield, J. A.

10.1101/147793 — molecular biology — Posted on 2017-06-11

1055 Gene networks provide a high-resolution view of bacteriophage ecology

Shapiro, J. W.; Putonti, C.

10.1101/148668 — microbiology — Posted on 2017-06-11

1056 Exosomes from Nef expressing monocytic cells restrict HIV-1 replication in infected cells through the assembly of stress granules

Ansari, M. Y.; Imam, H.; Kumar, N.; Ahmed, Z.; Jameel, S.

10.1101/148791 — cell biology — Posted on 2017-06-11

1057 GADD45α regulates cell proliferation and DNA repair of BRL-3A cells that treated by FZD/UVC via P38, JNK, CDC2/CCNB1, AKT and MTOR pathways

Yang, X.; Zhu, L.; Zhao, W.; He, C.; Li, S.; Xu, C.

10.1101/148759 — cell biology — Posted on 2017-06-11

1058 Enhancer Linking by Methylation/Expression Relationships with the R package ELMER version 2

Chedraoui Silva, T.; Coetzee, S. G.; Yao, L.; Hazelett, D. J.; Noushmehr, H.; Berman, B. P.

10.1101/148726 — bioinformatics — Posted on 2017-06-11

1059 Multiplex staining by sequential immunostaining and antibody removal on routine tissue sections

Bolognesi, M. M.; Manzoni, M.; Scalia, C. R.; Zannella, S.; Bosisio, F. M.; Faretta, M. R.; Cattoretti, G.

10.1101/148742 — pathology — Posted on 2017-06-11

1060 Magnetic Entropy as a Gating Mechanism for Magnetogenetic Ion Channels

Duret, G.; Polali, S.; Anderson, E. D.; Bell, A. M.; Tzouanas, C. N.; Avants, B. W.; Robinson, J. T.

10.1101/148379 — neuroscience — Posted on 2017-06-11

1061 Epistasis mediated alleviation of the cost of antibiotic resistance for MRSA

Yokoyama, M.; Laabei, M.; Stevens, E.; Bayliss, S.; Ooi, N.; O'Neill, A.; Murray, E.; Williams, P.; Lubben, A.; Reeksting, S.; Meric, G.; Pascoe, B.; Sheppard, S.; Recker, M.; Hurst, L.; Massey, R.

10.1101/148825 — microbiology — Posted on 2017-06-11

1062 A plausible explanation for in silico reporting of erroneous MET gene expression in tumor-educated platelets (TEP) intended for "liquid biopsy" of non-small cell lung carcinoma still refutes the TEP-study

Chakraborty, S.

10.1101/148718 — genomics — Posted on 2017-06-11

1063 Mating can cause transgenerational gene silencing in Caenorhabditis elegans

Devanapally, S.; Allgood, S.; Jose, A. M.

10.1101/148700 — genetics — Posted on 2017-06-11

1064 NuMA Targets Dynein to Microtubule Minus-Ends at Mitosis

Hueschen, C.; Kenny, S. J.; Xu, K.; Dumont, S.

10.1101/148692 — cell biology — Posted on 2017-06-11

1065 eGARD: Extracting associations between genomic anomalies and drug responses from text

Mahmood, A. S. M. A.; Rao, S.; McGarvey, P.; Wu, C.; Madhavan, S.; Vijay-Shanker, K.

10.1101/148833 — bioinformatics — Posted on 2017-06-11

1066 A new multi-genomic approach for the study of biogeochemical cycles at global scale: the molecular reconstruction of the sulfur cycle

De Anda, V.; Zapata-Penasco, I.; Contreras-Moreira, B.; Poot-Hernandez, A. C.; Eguiarte, L. E.; Souza, V.

10.1101/148775 — bioinformatics — Posted on 2017-06-11

1067 BugBuilder - An Automated Microbial Genome Assembly andAnalysis Pipeline

Abbott, J. C.

10.1101/148783 — bioinformatics — Posted on 2017-06-11

1068 Coupling effect of morphology and mechanical properties contributes to the tribological behaviors of snake scales

Zheng, L.; Zhong, Y.; Gao, Y.; Li, J.; Zhang, Z.; Liu, Z.; Ren, L.

10.1101/148734 — animal behavior and cognition — Posted on 2017-06-11

1069 The Potential for Iconicity in Vocalization

Perlman, M.; Lupyan, G.

10.1101/148841 — animal behavior and cognition — Posted on 2017-06-11

1070 Inter-Subject Alignment of MEG Datasets in a Common Representational Space

Zhang, Q.; Borst, J.; Kass, R. E.; Anderson, J. R.

10.1101/096040 — neuroscience — Posted on 2017-06-11

1071 RL-SKAT: An exact and efficient score test for heritability and set tests

Schweiger, R.; Weissbrod, O.; Rahmani, E.; Müller-Nurasyid, M.; Kunze, S.; Gieger, C.; Waldenberger, M.; Rosset, S.; Halperin, E.

10.1101/140889 — genetics — Posted on 2017-06-11

1072 Is having more than one CRISPR array adaptive?

Weissman, J. L.; Fagan, W. F.; Johnson, P. L.

10.1101/148544 — evolutionary biology — Posted on 2017-06-11

1073 Distinct Pattern Of Epigenetic DNA Modification In Leukocytes From Patients With Colorectal Carcinoma And Individuals With Precancerous Conditions, Benign Adenoma And Inflammatory Bowel Disease; A Link To Oxidative Stress

Starczak, M.; Zarakowska, E.; Modrzejewska, M.; Dziaman, T.; Szpila, A.; Linowiecka, K.; Guz, J.; Szpotan, J.; Gawronski, M.; Labejszo, A.; Banaszkiewicz, Z.; Klopocka, M.; Foksinski, M.; Gackowski, D.; Olinski, R.

10.1101/141903 — cancer biology — Posted on 2017-06-11

1074 Genetic mapping of species differences via "in vitro crosses" in mouse embryonic stem cells

Lazzarano, S.; Kucka, M.; Castro, J. P. L.; Naumann, R.; Medina, P.; Fletcher, M. N. C.; Wombacher, R.; Gribnau, J.; Hochepied, T.; Libert, C.; Chan, Y. F.

10.1101/148486 — genetics — Posted on 2017-06-10

1075 Critical transitions and the fragmenting of global forests

Saravia, L. A.; Doyle, S. R.; Bond-Lamberty, B.

10.1101/091751 — ecology — Posted on 2017-06-10

1076 Sperm chemotaxis is driven by the slope of the chemoattractant concentration field

Ramirez-Gomez, H. V.; Jimenez-Sabinina, V.; Tuval, I.; Velazquez-Perez, M.; Beltran, C.; Carneiro, J.; Wood, C.; Darszon, A.; Guerrero, A.

10.1101/148650 — biophysics — Posted on 2017-06-10

1077 Separable Fully Connected Layers Improve Deep Learning Models For Genomics

Alexandari, A. M.; Shrikumar, A.; Kundaje, A.

10.1101/146431 — bioinformatics — Posted on 2017-06-10

1078 Stability of Commonly Used Haematological Parameters in Samples Stored at 33°C, 22°C and 4°C

Jain, A.; Jain, S.; Singh, N.; Aswal, P.; Pal, S.; Meinia, S. K.; Chowdhury, N.

10.1101/148601 — pathology — Posted on 2017-06-10

1079 PhenoSpD: an atlas of phenotypic correlations and a multiple testing correction for the human phenome

Zheng, J.; Richardson, T.; Millard, L.; Hemani, G.; Raistrick, C.; Vilhjalmsson, B.; Haycock, P.; Gaunt, T.

10.1101/148627 — bioinformatics — Posted on 2017-06-10

1080 Quartet Sampling distinguishes lack of support from conflicting support in the plant tree of life

Pease, J. B.; Brown, J. W.; Walker, J. F.; Hinchliff, C. E.; Smith, S. A.

10.1101/148536 — evolutionary biology — Posted on 2017-06-10

1081 The adaptive acquisition of single DNA segments drives metabolic evolution across E. coli lineages

Pang, T. Y.; Lercher, M.

10.1101/148460 — systems biology — Posted on 2017-06-10

1082 Harmonization of cortical thickness measurements across scanners and sites

Fortin, J.-P.; Cullen, N.; Sheline, Y. I.; Taylor, W. D.; Aselcioglu, I.; Adams, P.; Cooper, C.; Fava, M.; McGrath, P. J.; McInnis, M.; Parsey, R. V.; Phillips, M. L.; Trivedi, M. H.; Weissman, M. M.; Shinohara, R. T.

10.1101/148502 — neuroscience — Posted on 2017-06-10

Hirabayashi, Y.; Tapia, J. C.; Polleux, F.

10.1101/148585 — neuroscience — Posted on 2017-06-10

1084 Strain-Specific Human Natural Killer Cell Recognition of Influenza A Virus

Kronstad, L. M.; Seiler, C.; Vergara, R.; Holmes, S. P.; Blish, C. A.

10.1101/148528 — immunology — Posted on 2017-06-10

1085 Complex spatio-temporal distribution and genogeographic affinity of mitochondrial DNA haplogroups in 24,216 Danes

Bybjerg-Grauholm, J.; Hagen, C.; Goncalves, V. F.; Baekvad-Hansen, M.; Hansen, C. S.; Hedley, P. L.; Kanters, J. K.; Nielsen, J.; Theisen, M.; Mors, O.; Kennedy, J.; Als, T. D.; Demur, A. B.; Werge, T.; Nordentoft, M.; Borglum, A.; Mortensen, P. B.; Hougaard, D.; Christiansen, M.

10.1101/148494 — genomics — Posted on 2017-06-10

1086 Quartet Sampling distinguishes lack of support from conflicting support \newline in the plant tree of life

Pease, J. B.; Brown, J. W.; Walker, J. F.; Hinchliff, C. E.; Smith, S. A.

10.1101/148536 — evolutionary biology — Posted on 2017-06-10

1087 Is having more than one CRISPR array adaptive?

Weissman, J. L.; Fagan, W. F.; Johnson, P. L.

10.1101/148544 — evolutionary biology — Posted on 2017-06-10

1088 Evolution Of Hierarchy In Bacterial Metabolic Networks

Goodman, A.; Feldman, M.

10.1101/118299 — evolutionary biology — Posted on 2017-06-09

1089 A Feedback Motif that Breaks the Fundamental Limit on Noise Suppression to Stabilize Fate

Wen, W. Y.; Ingerman, E.; Hansen, M. M. K.; Razooky, B. S.; Dar, R. D.; Chin, C.; Simpson, M.; Weinberger, L. S.

10.1101/141390 — cell biology — Posted on 2017-06-09

1090 Widespread dysregulation of the circadian clock in human cancer

Shilts, J.; Chen, G.; Hughey, J.

10.1101/130765 — cancer biology — Posted on 2017-06-09

1091 A Bayesian computational approach to explore the optimal duration of a cell proliferation assay

Browning, A. P.; McCue, S.; Simpson, M. J.

10.1101/147678 — biophysics — Posted on 2017-06-09

1092 No evidence for genome editing of the endogenous DNA in mouse zygotes and HEK293T human cell line using the DNA-guided Natronobacterium gregoryi Argonaute (NgAgo).

Khin, N. C.; Lowe, J. L.; Lora, J. M.; Burgio, G.

10.1101/091678 — molecular biology — Posted on 2017-06-09

1093 Incomplete dominance of deleterious alleles contributes substantially to trait variation and heterosis in maize

Yang, J.; Mezmouk, S.; Baumgarten, A.; Buckler, E. S.; Guill, K. E.; McMullen, M. D.; Mumm, R. H.; Ross-Ibarra, J.

10.1101/086132 — genetics — Posted on 2017-06-09

1094 Accurate Phasing of Pedigree Genotypes Using Whole Genome Sequence Data

Blackburn, A. N.; Kos, M. Z.; Blackburn, N. B.; Peralta, J. M.; Stevens, P.; Lehman, D. M.; Blondell, L.; Blangero, J.; Goring, H. H. H.

10.1101/148510 — genetics — Posted on 2017-06-09

1095 Metabolic engineering of Escherichia coli for production of valerenadiene

Nybo, S. E.; Saunders, J.; McCormick, S. P.

10.1101/148338 — synthetic biology — Posted on 2017-06-09

1096 Development of an HPTLC method for determination of hypoglycin A in aqueous extracts of seedlings and samaras of Acer species

Habyarimana, J. B. A.; Baise, E.; Douny, C.; Weber, M.; Boemer, F.; De Tullio, P.; Franck, T.; Marcillaud-Pitel, C.; Frederich, M.; Mouithys-Mickalad, A.; Richard, E.; Scippo, M.-L.; Votion, D.; Gustin, P.

10.1101/148262 — pharmacology and toxicology — Posted on 2017-06-09

1097 Age differentiation within grey matter, white matter and between memory and white matter in an adult lifespan cohort

de Mooij, S. M. M.; Henson, R. N. A.; Waldorp, L. J.; - Cam-CAN, ; Kievit, R. A.

10.1101/148452 — neuroscience — Posted on 2017-06-09

1098 Intercellular communication via the comX-Inducing Peptide (XIP) of Streptococcus mutans

Kaspar, J.; Underhill, S. A. M.; Shields, R. C.; Reyes, A.; Rosenzweig, S.; Hagen, S. J.; Burne, R. A.

10.1101/148320 — microbiology — Posted on 2017-06-09

1099 Reciprocal control of motility and biofilm formation by the PdhS2 two-component sensor kinase of Agrobacterium tumefaciens

Heindl, J. E.; Crosby, D.; Brar, S.; Merenich, D.; Buechlein, A. M.; Bruger, E. L.; Waters, C. M.; Fuqua, C.

10.1101/148429 — microbiology — Posted on 2017-06-09

1100 Indexcov: fast coverage quality control for whole-genome sequencing

Pedersen, B. S.; Collins, R. L.; Talkwoski, M. E.; Quinlan, A. R.

10.1101/148296 — genomics — Posted on 2017-06-09

1101 Phytoplankton traits from long-term oceanographic time-series

Mutshinda, C.; Finkel, Z. V.; Widdicombe, C. E.; Irwin, A. J.

10.1101/148304 — ecology — Posted on 2017-06-09

1102 A First Order Phase Transition Underlies the Formation of Sub-Diffractive Protein Aggregates in Mammalian Cells

Narayanan, A.; Meriin, A. B.; Sherman, M. Y.; Cisse, I. I.

10.1101/148395 — biophysics — Posted on 2017-06-09

1103 Challenges in estimating the motility parameters of single processive motor proteins

Ruhnow, F.; Kloss, L.; Diez, S.

10.1101/148346 — biophysics — Posted on 2017-06-09

1104 iDEP: An integrated web application for differential expression and pathway analysis

Ge, S. X.

10.1101/148411 — bioinformatics — Posted on 2017-06-09

1105 Graphtyper: Population-scale genotyping using pangenome graphs

Eggertsson, H. P.; Jonsson, H.; Kristmundsdottir, S.; Hjartarson, E.; Kehr, B.; Masson, G.; Zink, F.; Jonasdottir, A.; Jonasdottir, A.; Jonsdottir, I.; Gudbjartsson, D. F.; Melsted, P.; Stefansson, K.; Halldorsson, B. V.

10.1101/148403 — bioinformatics — Posted on 2017-06-09

1106 Multiple conserved cell adhesion protein interactions mediate neural wiring of a sensory circuit in C. elegans

Kim, B.; Emmons, S.

10.1101/148080 — neuroscience — Posted on 2017-06-09

1107 A performance assessment of relatedness inference methods using genome-wide data from thousands of relatives

Ramstetter, M.; Dyer, T. D.; Lehman, D. M.; Curran, J. E.; Duggirala, R.; Blangero, J.; Mezey, J. G.; Williams, A. L.

10.1101/106013 — genetics — Posted on 2017-06-09

1108 Antisocial rewarding in structured populations

dos Santos, M.; Pena, J.

10.1101/092932 — evolutionary biology — Posted on 2017-06-09

1109 Meta-analysis of Cytometry Data Reveals Racial Differences in Immune Cells

Hu, Z.; Jujjavarapu, C.; Hughey, J. J.; Andorf, S.; Gherardini, P. F.; Spitzer, M. H.; Dunn, P.; Thomas, C. G.; Campbell, J.; Wiser, J.; Nolan, G. P.; Bhattacharya, S.; Butte, A. J.

10.1101/130948 — bioinformatics — Posted on 2017-06-09

1110 pulse2percept: A Python-based simulation framework for bionic vision

Beyeler, M.; Boynton, G. M.; Fine, I.; Rokem, A.

10.1101/148015 — neuroscience — Posted on 2017-06-09

1111 Intracellular BH3 profiling reveals shifts in anti-apoptotic dependency in B-cell maturation and activation

Luftig, M. A.; Dai, J.

10.1101/148437 — immunology — Posted on 2017-06-09

1112 Transcript Isoform Differences Across Human Tissues Are Predominantly Driven By Alternative Start And Termination Sites Of Transcription

Reyes, A.; Huber, W.

10.1101/127894 — genomics — Posted on 2017-06-09

1113 Quantifying the impact of rare and ultra-rare coding variation across the phenotypic spectrum

Ganna, A.; Satterstrom, K.; Zekavat, S.; Das, I.; Kurki, M.; Churchhouse, C.; Alfoldi, J.; Martin, A.; Havulinna, A.; Byrnes, A.; Thompson, W.; Nielsen, P.; Karczewski, K.; Saarentaus, E.; Rivas, M.; Gupta, N.; Pietilainen, O.; Emdin, C.; Lescai, F.; Bybjerg-Grauholm, J.; Flannick, J.; Mercader, J.; Udler, M.; Laakso, M.; Salomaa, V.; Hultman, C.; Ripatti, S.; Hamalainen, E.; Moilanen, J.; Korkko, J.; Kuismin, O.; Nordentoft, M.; Hougaard, D.; Mors, O.; Werge, T.; Mortensen, P.; MacArthur, D.; Daly, M.; Sullivan, P.; Locke, A.; Palotie, A.; Borglum, A.; Kathiresan, S.; Neale, B.

10.1101/148247 — genetics — Posted on 2017-06-09

1114 aPKC-mediated displacement and actomyosin-mediated retention polarize Miranda in Drosophila neuroblasts

Hannaford, M.; Ramat, A.; Loyer, N.; Januschke, J.

10.1101/148213 — cell biology — Posted on 2017-06-09

1115 Roughness of a transmembrane peptide reduces lipid membrane dynamics

Olsinova, M.; Jurkiewicz, P.; Sykora, J.; Sabo, J.; Hof, M.; Cwiklik, L.; Cebecauer, M.

10.1101/093377 — biophysics — Posted on 2017-06-09

1116 Reverse-Correlation Analysis of Mechanosensation Circuit in C. elegans Reveals Temporal and Spatial Encoding

Porto, D. A.; Giblin, J.; Zhao, Y.; Lu, H.

10.1101/147363 — bioengineering — Posted on 2017-06-09

1117 Splice Expression Variation Analysis (SEVA) for Inter-tumor Heterogeneity of Gene Isoform Usage in Cancer

Afsari, B.; Guo, T.; Considine, M.; Florea, L.; Kelley, D.; Flam, E.; Ha, P.; Geman, D.; Ochs, M. F.; Califano, J. A.; Gaykalova, D. A.; Favorov, A. V.; Fertig, E. J.

10.1101/091637 — genomics — Posted on 2017-06-09

1118 A single-cell anatomical blueprint for intracortical information transfer from primary visual cortex

Han, Y.; Kebschull, J. M.; Campbell, R. A. A.; Cowan, D.; Imhof, F.; Zador, A. M.; Mrsic-Flogel, T. D.

10.1101/148031 — neuroscience — Posted on 2017-06-09

1119 De-novo assembly of zucchini genome reveals a whole genome duplication associated with the origin of the Cucurbita genus

Montero-Pau, J.; Blanca, J.; Bombarely, A.; Ziarsolo, P.; Esteras, C.; Marti-Gomez, C.; Ferriol, M.; Gomez, P.; Jamilena, M.; Mueller, L.; Pico, B.; Canizares, J.

10.1101/147702 — genomics — Posted on 2017-06-09

1120 Near-Atomic Resolution Structure Determination in Over-Focus with Volta Phase Plate by Cs-corrected Cryo-EM

Fan, X.; Zhao, L.; Liu, C.; Zhang, J.-C.; Fan, K.; Yan, X.; Peng, H.-L.; Lei, J.; Wang, H.-W.

10.1101/148205 — biophysics — Posted on 2017-06-09

1121 Addressing current challenges in cancer immunotherapy with mathematical and computational modeling

Konstorum, A.; Vella, A. T.; Adler, A.; Laubenbacher, R.

10.1101/146902 — systems biology — Posted on 2017-06-09

1122 Decoding the orientation of contrast edges from MEG evoked and induced responses

Pantazis, D.; Fang, M.; Qin, S.; Mohsenzadeh, Y.; Li, Q.; Cichy, R. M.

10.1101/148056 — neuroscience — Posted on 2017-06-09

1123 Listening to speech induces coupling between auditory and motor cortices in an unexpectedly rate-restricted manner

Assaneo, M. F.; Poeppel, D.

10.1101/148288 — neuroscience — Posted on 2017-06-09

1124 Hammondia hammondi has a developmental program in vitro that mirrors its stringent two host life cycle

Sokol, S. L.; Primack, A. S.; Nair, S. C.; Wong, Z. S.; Tembo, M.; Dubey, J. P.; Verma, S. K.; Boyle, J. P.

10.1101/148270 — microbiology — Posted on 2017-06-09

1125 Warm and wet: robust lipase-producing bacteria from the indoor environment

Tanner, K.; Abendroth, C.; Porcar, M.

10.1101/148148 — microbiology — Posted on 2017-06-09

1126 SNP Data Quality Control in a National Beef and Dairy Cattle System and Highly Accurate SNP Based Parentage Verification and Identification

McClure, M. C.; McCarthy, J.; Flynn, P.; McClure, J.; O'Connell, K.; Kearney, F.

10.1101/148171 — genetics — Posted on 2017-06-09

1127 Population genomics of bank vole populations reveals associations between immune related genes and the epidemiology of Puumala hantavirus in Sweden

Rohfritsch, A.; Galan, M.; Gautier, M.; Gharbi, K.; Olsson, G.; Gschloessl, B.; Zeimes, C.; VanWambeke, S.; Vitalis, R.; Charbonnel, N.

10.1101/148163 — evolutionary biology — Posted on 2017-06-09

1128 Renewed diversification following Miocene landscape turnover in a Neotropical butterfly radiation

Chazot, N.; Willmott, K. R.; Lamas, G.; Freitas, A. V. L.; Piron-Prunier, F.; Arias, C. F.; De-Silva, D. L.; Elias, M.

10.1101/148189 — evolutionary biology — Posted on 2017-06-09

1129 Principles that govern competition or co-existence in Rho-GTPase driven polarization

Chiou, J.-g.; Elston, T. C.; Witelski, T. P.; Schaeffer, D. G.; Lew, D. J.

10.1101/148064 — cell biology — Posted on 2017-06-09

1130 Indoril: An I-PV Add-On For Visualization Of Point Mutations On 3D Cartesian Coordinates

Tanyalcin, I.; Ferte, J.; Khan, T.; Al Assaf, C.

10.1101/148122 — bioinformatics — Posted on 2017-06-09

1131 OneD: increasing reproducibility of Hi-C Samples with abnormal karyotypes

Vidal, E.; le Dily, F.; Quilez, J.; Stadhouders, R.; Cuartero, Y.; Graf, T.; Marti-Renom, M. A.; Beato, M.; Filion, G.

10.1101/148254 — bioinformatics — Posted on 2017-06-09

1132 Cameo: A Python Library for Computer Aided Metabolic Engineering and Optimization of Cell Factories

Cardoso, J.; Jensen, K.; Lieven, C.; Hansen, A. S. L.; Galkina, S.; Beber, M. E.; Ozdemir, E.; Herrgard, M.; Redestig, H.; Sonnenschein, N.

10.1101/147199 — bioengineering — Posted on 2017-06-09

1133 An integrative method to unravel the host-parasite interactome: An orthology-based approach

Cuesta Astroz, Y.; Santos, A.; Oliveira, G.; Jensen, L. J.

10.1101/147868 — systems biology — Posted on 2017-06-09

1134 Genetic Instrumental Variable (GIV) Regression: Explaining Socioeconomic And Health Outcomes In Non-Experimental Data

DiPrete, T. A.; Burik, C.; Koellinger, P.

10.1101/134197 — genetics — Posted on 2017-06-09

1135 Rab5-mediated Yolk Cell Endocytosis modulates Zebrafish Epiboly Biomechanics and Tissue Movements

Marsal, M.; Hernandez-Vega, A.; Pouille, P.-A.; Martin-Blanco, E.

10.1101/097212 — developmental biology — Posted on 2017-06-09

1136 PinAPL-Py: a web-service for the analysis of CRISPR-Cas9 Screens

Spahn, P. N.; Bath, T.; Weiss, R. J.; Kim, J.; Esko, J. D.; Lewis, N. E.; Harismendy, O.

10.1101/147462 — bioinformatics — Posted on 2017-06-09

1137 Integrating long-range connectivity information into de Bruijn graphs

Turner, I.; Garimella, K. V.; Iqbal, Z.; McVean, G.

10.1101/147777 — bioinformatics — Posted on 2017-06-09

1138 Post-transcriptional modulation of Dscam1 enhances axonal growth in development and after injury

Koch, M.; Nicolas, M.; Zschaetzsch, M.; de Geest, N.; Claeys, A.; Yan, J.; Morgan, M.; Erfurth, M.-L.; Holt, M.; Schmucker, D.; Hassan, B.

10.1101/148239 — neuroscience — Posted on 2017-06-09

1139 The formation of fear extinction memory requires the accumulation of N6-methyl-2-deoxyadenosine in DNA

Li, X.; Zhao, Q.; Wei, W.; Lin, Q.; Magnan, C.; Emami, M.; Wearick-Silva, L. E.; Viola, T.; Marshall, P.; Edmunds, J.; Nainar, S.; Vagbo, C. B.; Leighton, L.; Zajaczkowski, E. L.; Ke, K.; Grassi-Oliveira, R.; Bjoras, M.; Baldi, P. F.; Spitale, R. C.; Bredy, T. W.

10.1101/059972 — neuroscience — Posted on 2017-06-09

1140 Temporal and spatial variation among single dopaminergic neuron transcriptomes informs cellular phenotype diversity and Parkinson’s Disease gene prioritization

Hook, P.; McClymont, S. A.; Cannon, G. H.; Law, W. D.; Goff, L. A.; McCallion, A. S.

10.1101/148049 — genetics — Posted on 2017-06-09

1141 Sequence and structural diversity of mouse Y chromosomes

Morgan, A. P.; Pardo Manuel de Villena, F.

10.1101/096297 — genetics — Posted on 2017-06-09

1142 Chromatin mobility after DNA damage is modified to enhance long distance explorations and minimize local resampling

Mine-Hattab, J.; Recamier, V.; Izeddin, I.; Rothstein, R.; Darzacq, X.

10.1101/042051 — biophysics — Posted on 2017-06-09

1143 Differential Mast Cell Outcomes Are Sensitive to FcϵRI-Syk Binding Kinetics

Schwartz, S. L.; Cleyrat, C.; Olah, M.; Relich, P.; Phillips, G.; Hlavacek, W. S.; Lidke, K. A.; Wilson, B. S.; Lidke, D.

10.1101/147595 — cell biology — Posted on 2017-06-09

1144 Multi-dimensional genomic analysis of myoepithelial carcinoma identifies prevalent oncogenic gene fusions

Dalin, M.; Katabi, N.; Persson, M.; Lee, K.-W.; Makarov, V.; Desrichard, A.; Walsh, L.; West, L.; Nadeem, Z.; Ramaswami, D.; Havel, J.; Kuo, F.; Chadalavada, K.; Nanjangud, G.; Riaz, N.; Ho, A.; Antonescu, C.; Ghossein, R.; Stenman, G.; Chan, T.; Morris, L. G. T.

10.1101/148072 — cancer biology — Posted on 2017-06-09

1145 Cell type boundaries organize plant development

Caggiano, M. P.; Yu, X.; Bhatia, N.; Larsson, A.; Ram, H.; Ohno, C. K.; Sappl, P.; Meyerowitz, E. M.; Jönsson, H.; Heisler, M. G.

10.1101/126466 — developmental biology — Posted on 2017-06-09

1146 Mutations in the Drosophila splicing regulator Prp31 as a model for Retinitis pigmentosa 11

Lehmann, M.; Hebbar, S.; Brandl, H.; Leng, W.; Lakshmanaperumal, N.; Winkler, S.; Knust, E.

10.1101/147918 — genetics — Posted on 2017-06-09

1147 Multiple antibodies identify Glypican-1 on serum exosomes from patients with pancreatic cancer

Melo, S.; Kahlert, C.; LeBleu, V.; Kalluri, R.

10.1101/145706 — cancer biology — Posted on 2017-06-08

1148 Integrated transcriptomic, proteomic and epigenomic analysis of Plasmodium vivax salivary-gland sporozoites

Jex, A.; Mueller, I.; Kappe, S.; Mikolajcjak, S.; Sattabongkot, J.; Patrapuvich, R.; Lindner, S.; Flannery, E.; Koepfli, C.; Ansell, B.; Lerch, A.; Swearingen, K. E.; Moritz, R. L.; Petter, M.; Duffy, M.; Chuenchob, V.

10.1101/145250 — microbiology — Posted on 2017-06-08

1149 Genetic determinants of co-accessible chromatin regions in T cell activation across humans

Cheng, C. S.; Gate, R. E.; Aiden, A. P.; Siba, A.; Tabaka, M.; Lituiev, D.; Machol, I.; Subramaniam, M.; Shammim, M.; Hougen, K. L.; Wortman, I.; Huang, S.-C.; Durand, N. C.; Feng, T.; De Jager, P. L.; Chang, H. Y.; Lieberman Aiden, E.; Benoist, C.; Beer, M. A.; Ye, C. J.; Regev, A.

10.1101/090241 — genomics — Posted on 2017-06-08

1150 Cross-tissue integration of genetic and epigenetic data offers insight into autism spectrum disorder

Andrews, S. V.; Ellis, S. E.; Bakulski, K. M.; Sheppard, B.; Croen, L. A.; Hertz-Picciotto, I.; Newschaffer, C. J.; Feinberg, A. P.; Arking, D. E.; Ladd-Acosta, C.; Fallin, M. D.

10.1101/091330 — genomics — Posted on 2017-06-08

1151 Drosophila mutants that are motile but respond poorly to all stimuli tested

Vang, L. L.; Adler, J.

10.1101/045062 — genetics — Posted on 2017-06-08

1152 Incomplete dominance of deleterious alleles contributes substantially to trait variation and heterosis in maize

Yang, J.; Mezmouk, S.; Baumgarten, A.; Buckler, E. S.; Guill, K. E.; McMullen, M. D.; Mumm, R. H.; Ross-Ibarra, J.

10.1101/086132 — genetics — Posted on 2017-06-08

1153 Regime shifts, alternative states and hysteresis in the Sarracenia microecosystem

Lau, M. K.; Baiser, B.; Northrop, A.; Gotelli, N. J.; Ellison, A. M.

10.1101/087296 — ecology — Posted on 2017-06-08

1154 Chromatin mobility after DNA damage is modified to enhance long distance explorations and minimize local resampling

Mine-Hattab, J.; Recamier, V.; Izeddin, I.; Rothstein, R.; Darzacq, X.

10.1101/042051 — biophysics — Posted on 2017-06-08

1155 An integrative method to unravel the host-parasite interactome: An orthology-based approach

Cuesta-Astroz, Y.; Santos, A.; Oliveira, G.; Jensen, L. J.

10.1101/147868 — systems biology — Posted on 2017-06-08

1156 Network connectivity predicts cortical thinning and cognitive decline in early parkinson’s disease

Yau, Y. H. C.; Zeighami, Y.; Baker, T.; Larcher, K.; Vainik, U.; Dadar, M.; Fonov, V.; Hagmann, P.; Griffa, A.; Misic, B.; Collins, D. L.; Dagher, A.

10.1101/147611 — neuroscience — Posted on 2017-06-08

1157 Neuronal adaptation and optimal coding in economic decisions

Rustichini, A.; Conen, K. E.; Cai, X.; Padoa-Schioppa, C.

10.1101/147900 — neuroscience — Posted on 2017-06-08

1158 Glucose limitation in Lactococcus shapes a single-peaked fitness landscape exposing membrane occupancy as a constraint

Price, C.; Branco dos Santos, F.; Hesseling, A.; Uusitalo, J.; Bachmann, H.; Benavente, V.; Goel, A.; Berkhout, J.; Bruggeman, F.; Marrink, S.-J.; Montalban-Lopez, M.; de Jong, A.; Kok, J.; Molenaar, D.; Poolman, B.; Teusink, B.; Kuipers, O.

10.1101/147926 — genomics — Posted on 2017-06-08

1159 On the heritability of criminal justice processing

Boutwell, B. B.; Connolly, E.

10.1101/107748 — epidemiology — Posted on 2017-06-08

1160 More than Drylands but Less of Dry Forests

De la Cruz, M.; Quintana-Ascencio, P. F.; Cayuela, L.; Espinosa, C. I.; Escudero, A.

10.1101/147942 — ecology — Posted on 2017-06-08

1161 Centriole triplet microtubules are required for stable centriole formation and inheritance in human cells

Wang, J. T.; Kong, D.; Hoerner, C. R.; Loncarek, J.; Stearns, T.

10.1101/147975 — cell biology — Posted on 2017-06-08

1162 Polarization effects and the calibration of a donut beam axial optical tweezers for single-molecule force spectroscopy

Pollari, R.; Milstein, J. N.

10.1101/147967 — biophysics — Posted on 2017-06-08

1163 Segway 2.0: Gaussian mixture models and minibatch training

Chan, R. C. W.; Libbrecht, M. W.; Roberts, E. G.; Noble, W. S.; Hoffman, M. M.

10.1101/147470 — bioinformatics — Posted on 2017-06-08

1164 HiCdiff: A method for joint normalization of Hi-C datasets and differential chromatin interaction detection

Stansfield, J.; Dozmorov, M. G.

10.1101/147850 — bioinformatics — Posted on 2017-06-08

1165 WebMeV: A Cloud Platform for Analyzing and Visualizing Cancer Genomic Data

Wang, Y. E.; Kuznetsov, L.; Partensky, A.; Farid, J.; Quackenbush, J.

10.1101/147884 — bioinformatics — Posted on 2017-06-08

1166 Chimeric CRISPR guides enhance Cas9 target specificity

Jakimo, N.; Chatterjee, P.; Jacobson, J. M.

10.1101/147686 — biochemistry — Posted on 2017-06-08

1167 Ecological characterization and infection of Anophelines (Diptera: Culicidae) of the Atlantic Forest in the southeast of Brazil over a 10 year period: Has the behaviour of the autochthonous malaria vector changed?

Buery, J. C.; Rezende, H. R.; Natal, L.; Santana, L.; Menezes, R. M. T.; Fux, B.; Malafronte, R. D. S.; Falqueto, A.; Cerutti Junior, C.

10.1101/146803 — epidemiology — Posted on 2017-06-08

1168 Performance Of Children With Autism In Parent-Administered Cognitive And Language Exercises

Dunn, R.; Elgart, J.; Lokshina, L.; Faisman, A.; Khokhlovich, E.; Gankin, Y.; Vyshedskiy, A.

10.1101/146449 — clinical trials — Posted on 2017-06-08

1169 The Stochastic Early Reaction, Inhibition, and Late Action (SERIA) Model for Antisaccades SERIA - A model for errors and reaction times in the antisaccade task

Aponte, E. A.; Schobi, D.; Stephan, K. E.; Heinzle, J.

10.1101/109090 — neuroscience — Posted on 2017-06-08

1170 A High Resolution Atlas Of Gene Expression In The Domestic Sheep (Ovis aries)

Clark, E. L.; Bush, S. J.; McCulloch, M. E. B.; Farquhar, I. L.; Young, R.; Lefevre, L.; Pridans, C.; Tsang, H.-G.; Wu, C.; Afrasiabi, C.; Watson, M.; Whitelaw, B.; Freeman, T.; Summers, K. M.; Archibald, A. L.; Hume, D. A.

10.1101/132696 — genomics — Posted on 2017-06-08

1171 The Plastid Genome In Cladophorales Green Algae Is Encoded By Hairpin Plasmids

Del Cortona, A.; Leliaert, F.; Bogaert, K. A.; Turmel, M.; Boedeker, C.; Janouskovec, J.; Lopez-Bautista, J. M.; Verbruggen, H.; Vandepoele, K.; De Clerck, O.

10.1101/145037 — genomics — Posted on 2017-06-08

1172 Changing geographic patterns and risk factors for avian influenza A(H7N9) infection in China

Artois, J.; Wang, X.; Jiang, H.; Qin, Y.; Pearcy, M.; Lai, S.; Shi, Y.; Zhang, J.; Peng, Z.; Zheng, J.; He, Y.; Dhingra, M.; von Dobschuetz, S.; Guo, F.; Martin, V.; Kalpravidh, W.; Claes, F.; Robinson, T.; Hay, S.; Xiao, X.; Feng, L.; Gilbert, M.; Yu, H.

10.1101/146183 — epidemiology — Posted on 2017-06-08

1173 Women’s estimated HIV infections from sex in trials of pre-exposure prophylaxis in Africa: Implications for HIV prevention strategies

Gisselquist, D.

10.1101/146530 — epidemiology — Posted on 2017-06-08

1174 Demoralization among cancer patients in mainland China: validity of the Demoralization Scale (DS)

Deng, L.; Pang, Y.; He, Y.; Zhang, Y.; Fielding, R.; Tang, L.

10.1101/144865 — epidemiology — Posted on 2017-06-08

1175 Exposing the Exposome with Global Metabolomics andCognitive Computing

Warth, B.; Spangler, S.; Fang, M.; Johnson, C.; Forsberg, E.; Granados, A.; Martin, R. L.; Domingo, X.; Huan, T.; Rinehart, D.; Montenegro-Burke, J. R.; Hilmers, B.; Aisporna, A.; Hoang, L. T.; Uritboonthai, W.; Benton, P.; Richardson, S. D.; Williams, A. J.; Siuzdak, G.

10.1101/145722 — epidemiology — Posted on 2017-06-08

1176 Spatial capture-recapture with partial identity: an application to camera traps

Augustine, B.; Royle, J. A.; Kelly, M.; Satter, C.; Alonso, R.; Boydston, E.; Crooks, K.

10.1101/056804 — ecology — Posted on 2017-06-08

1177 Dense Bicoid Hubs Accentuate Binding along the Morphogen Gradient

Mir, M.; Reimer, A.; Haines, J. E.; Li, X.-Y.; Stadler, M.; Garcia, H.; Eisen, M. B.; Darzacq, X.

10.1101/133124 — developmental biology — Posted on 2017-06-08

1178 Differential Community Detection in Paired Biological Networks

Mall, R.; Ullah, E.; Kunji, K.; D'Angelo, F.; Bensmail, H.; Ceccarelli, M.

10.1101/147538 — systems biology — Posted on 2017-06-08

1179 Three-dimensional plant architecture and sunlit-shaded dynamics: A stochastic model to enable high-throughput physiological analysis

Retkute, R.; Townsend, A. J.; Murchie, E. H.; Jensen, O. E.; Preston, S. P.

10.1101/147553 — plant biology — Posted on 2017-06-08

1180 Metabolomics and biochemical approaches link salicylic acid biosynthesis to cyanogenesis in peach plants

Diaz-Vivancos, P.; Bernal-Vicente, A.; Cantabella, D.; Petri, C.; Hernandez, J. A.

10.1101/147819 — physiology — Posted on 2017-06-08

1181 Neural dynamics of real-world object vision that guide behaviour

Cichy, R. M.; Kriegeskorte, N.; Jozwik, K. M.; van den Bosch, J. J. F.; Charest, I.

10.1101/147298 — neuroscience — Posted on 2017-06-08

1182 ComM is a hexameric helicase that promotes branch migration during natural transformation in diverse Gram-negative species

Nero, T. M.; Dalia, T. N.; Wang, J. C.-Y.; Kysela, D. T.; Bochman, M. L.; Dalia, A. B.

10.1101/147660 — microbiology — Posted on 2017-06-08

1183 The integrated stress response pathway activates 4E-BP to bias mRNA translation and boost antimicrobial peptide synthesis in response to bacterial infection

Vasudevan, D.; Clark, N.; Sam, J.; Ueberheide, B.; Marr, M. T.; Ryoo, H. D.

10.1101/147629 — immunology — Posted on 2017-06-08

1184 Evolution of Drift Robustness in Small Populations

LaBar, T.; Adami, C.

10.1101/071894 — evolutionary biology — Posted on 2017-06-08

1185 The uptake of attractant and flavour enhanced baits by foxes (Vulpes vulpes) in rural England

Smith, G. C.; Woods, J. A.

10.1101/147249 — ecology — Posted on 2017-06-08

1186 Competition in the savanna: Models of species assemblages in Kruger National Park, South Africa

Ryan, S. J.; Ladau, J.

10.1101/147652 — ecology — Posted on 2017-06-08

1187 Evaluation of RNAi and CRISPR technologies by large-scale gene expression profiling in the Connectivity Map

Smith, I.; Greenside, P.; Wadden, D.; Tirosh, I.; Natoli, T.; Narayan, R.; Root, D. E.; Golub, T. R.; Subramanian, A.; Doench, J. G.

10.1101/147504 — bioinformatics — Posted on 2017-06-08

1188 Integrating long-range connectivity information into de Bruijn graphs

Turner, I.; Garimella, K. V.; Iqbal, Z.; McVean, G.

10.1101/147777 — bioinformatics — Posted on 2017-06-08

1189 TCGAbiolinksGUI: A graphical user interface to analyze cancer molecular and clinical data

Silva, T. C.; Colaprico, A.; Olsen, C.; Bontempi, G.; Ceccarelli, M.; Berman, B. P.; Noushmehr, H.

10.1101/147496 — bioinformatics — Posted on 2017-06-08

1190 Transcriptome Deconvolution of Heterogeneous Tumor Samples with Immune Infiltration

Wang, Z.; Morris, J. S.; Cao, S.; Ahn, J.; Liu, R.; Tyekucheva, S.; Li, B.; Lu, W.; Tang, X.; Wistuba, I. I.; Bowden, M.; Mucci, L.; Loda, M.; Parmigiani, G.; Holmes, C. C.; Wang, W.

10.1101/146795 — bioinformatics — Posted on 2017-06-08

1191 Independent contributions of noradrenaline to behavioural flexibility and motivation

Jahn, C. I.; Gilardeau, S.; Varazzani, C.; Blain, B.; Sallet, J.; Walton, M. E.; Bouret, S.

10.1101/147512 — neuroscience — Posted on 2017-06-08

1192 Robust Averaging Protects Decisions from Noise in Neural Computations

Li, V. L.; Herce Castanon, S.; Solomon, J. A.; Vandormael, H.; Summerfield, C.

10.1101/147744 — neuroscience — Posted on 2017-06-08

1193 Network Connectivity Predicts Cortical Thinning and Cognitive Decline in Early Parkinson’s Disease

Yau, Y. H. C.; Zeighami, Y.; Baker, T.; Larcher, K.; Vainik, U.; Dadar, M.; Fonov, V.; Hagmann, P.; Griffa, A.; Misic, B.; Collins, D. L.; Dagher, A.

10.1101/147611 — neuroscience — Posted on 2017-06-08

1194 Engagement rules that underpin DBL-DARC interactions for ingress of Plasmodium knowlesi and Plasmodium vivax into human erythrocytes

Yogavel, M.; Jamwal, A.; Gupta, S.; Sharma, A.

10.1101/147769 — microbiology — Posted on 2017-06-08

1195 The cavity method for community ecology

Barbier, M.; Arnoldi, J.-F.

10.1101/147728 — ecology — Posted on 2017-06-08

1196 Combining global tree cover loss data with historical national forest-cover maps to look at six decades of deforestation and forest fragmentation in Madagascar

Vieilledent, G.; Grinand, C.; Rakotomalala, F. A.; Ranaivosoa, R.; Rakotoarijaona, J.-R.; Allnutt, T. F.; Achard, F.

10.1101/147827 — ecology — Posted on 2017-06-08

1197 PathCORE: Visualizing globally co-occurring pathways in large transcriptomic compendia

Chen, K. M.; Tan, J.; Way, G. P.; Doing, G.; Hogan, D. A.; Greene, C. S.

10.1101/147645 — bioinformatics — Posted on 2017-06-08

1198 Molecular Correlate Of Mouse Executive Function. Top-Down And Bottom-Up Information Flows Complementation By Ntng Gene Paralogs

Prosselkov, P.; Zhang, Q.; Goto, H.; Polygalov, D.; McHugh, T. J.; Itohara, S.

10.1101/139444 — neuroscience — Posted on 2017-06-08

1199 The Genetic Intractability Of Symbiodinium microadriaticum To Standard Algal Transformation Methods

Chen, J. E.; Cui, G.; Aranda Lastra, M.

10.1101/140616 — molecular biology — Posted on 2017-06-08

1200 A Chiral Selectivity Relaxed Paralog Of DTD For Proofreading tRNA Mischarging In Animalia

Kuncha, S. K.; Mazeed, M.; Singh, R.; Kattula, B.; Routh, S. B.; Sankaranarayanan, R.

10.1101/123919 — biochemistry — Posted on 2017-06-08

1201 A Negative Feedback Regulates The Flow Of Signal Through Akt/mTORC1/S6K1 Pathway

Dutta, P.; Devaraj, V.; Bose, B.

10.1101/147710 — systems biology — Posted on 2017-06-08

1202 Multi-Locus And Long Amplicon Sequencing Approach To Study Microbial Diversity At Species Level Using The MinION™ Portable Nanopore Sequencer

Benitez-Paez, A.; Sanz, Y.

10.1101/117143 — microbiology — Posted on 2017-06-08

1203 Highly parallel genome variant engineering with CRISPR/Cas9 in eukaryotic cells

Sadhu, M. J.; Bloom, J. S.; Day, L.; Siegel, J. J.; Kosuri, S.; Kruglyak, L.

10.1101/147637 — genomics — Posted on 2017-06-08

1204 Feminizing Wolbachia endosymbiont disrupts maternal sex chromosome inheritance in a butterfly species

Kageyama, D.; Ohno, M.; Sasaki, T.; Yoshido, A.; Konagaya, T.; Jouraku, A.; Kuwazaki, S.; Kanamori, H.; Katayose, Y.; Narita, S.; Miyata, M.; Riegler, M.; Sahara, K.

10.1101/115386 — evolutionary biology — Posted on 2017-06-08

1205 Despite reproductive interference, the net outcome of reproductive interactions among spider mite species is not necessarily costly

Clemente, S. H.; Santos, I.; Ponce, A. R.; Rodrigues, L. R.; Varela, S. A. M.; Magalhaes, S.

10.1101/113274 — ecology — Posted on 2017-06-08

1206 In vitro induction and in vivo engraftment of lung bud tip progenitor cells derived from human pluripotent stem cells

Miller, A. J.; Nagy, M. S.; Hill, D. R.; Tsai, Y.-H.; Aoki, Y.; Dye, B. R.; Chin, A. M.; Huang, S.; Ferguson, M. A. H.; Zhou, F.; White, E. S.; Lama, V.; Spence, J. R.

10.1101/108845 — developmental biology — Posted on 2017-06-08

1207 Measuring Protein Binding to Lipid Vesicles by Fluorescence Cross-Correlation Spectroscopy

Kruger, D.; Ebenhan, J.; Bacia, K.

10.1101/146464 — biophysics — Posted on 2017-06-08

1208 A Bayesian computational approach to explore the optimal duration of a cell proliferation assay

Browning, A. P.; McCue, S.; Simpson, M. J.

10.1101/147678 — biophysics — Posted on 2017-06-08

1209 PinAPL-Py: a web-service for the analysis of CRISPR-Cas9 Screens

Spahn, P. N.; Bath, T.; Weiss, R. J.; Kim, J.; Esko, J. D.; Lewis, N. E.; Harismendy, O.

10.1101/147462 — bioinformatics — Posted on 2017-06-08

1210 ESCRT-III acts in scissioning new peroxisomes from the ER

Mast, F. D.; Herricks, T.; Strehler, K. M.; Miller, L. R.; Saleem, R. A.; Rachubinski, R. A.; Aitchison, J. D.

10.1101/147603 — cell biology — Posted on 2017-06-07

1211 A programmable optical stimulator for the Drosophila eye

Chen, X.; Leon-Salas, W.; Zigon, T.; Weake, V.; Ready, D.

10.1101/147389 — bioengineering — Posted on 2017-06-07

1212 In vitro reconstitution of T cell receptor-mediated segregation of the CD45 phosphatase

Carbone, C. B.; Kern, N.; Fernandes, R. A.; Hui, E.; Su, X.; Garcia, K. C.; Vale, R.

10.1101/097600 — immunology — Posted on 2017-06-07

1213 FUSTr: a tool to find gene Families Under Selection in Transcriptomes

Cole, T. J.; Brewer, M. S.

10.1101/146951 — bioinformatics — Posted on 2017-06-07

1214 Recent local and population level responses of Greater Sage Grouse to oil and gas development in Wyoming

Ramey, R. R.; Thorley, J. L.; Ivey, A. S.

10.1101/028274 — ecology — Posted on 2017-06-07

1215 Novel multiscale insights into the composite nature of water transport in roots

Couvreur, V.; Faget, M.; Lobet, G.; Javaux, M.; Chaumont, F.; Draye, X.

10.1101/147314 — plant biology — Posted on 2017-06-07

1216 Just One Brain Activity

Tozzi, A.; Peters, J.

10.1101/147447 — neuroscience — Posted on 2017-06-07

1217 Cortical Entropy Values Correlate With Brain Scale-Free Dynamics

Tozzi, A.; Peters, J.; Cankaya, M.

10.1101/147405 — neuroscience — Posted on 2017-06-07

1218 Genomic insights and temperature-dependent transcriptional responses of Kosmotoga olearia, a deep-biosphere bacterium that can grow from 20°C to 79°C

Pollo, S. M. J.; Adebusuy, A. A.; Straub, T. J.; Foght, J. M.; Zhaxybayeva, O.; Nesbo, C. L.

10.1101/060053 — microbiology — Posted on 2017-06-07

1219 Phenolic glycolipid facilitates mycobacterial escape from a microbicidal population of tissue-resident macrophages

Cambier, C. J.; O'Leary, S. M.; O'Sullivan, M. P.; Keane, J.; Ramakrishnan, L.

10.1101/147421 — immunology — Posted on 2017-06-07

1220 Collider Scope: When selection bias can substantially influence observed associations

Munafo, M. R.; Tilling, K.; Taylor, A. E.; Evans, D. M.; Davey Smith, G.

10.1101/079707 — epidemiology — Posted on 2017-06-07

1221 Prediction of RNA-protein sequence and structure binding preferences using deep convolutional and recurrent neural networks

Pan, X.; Rijnbeek, P.; Yan, J.; Shen, H.-B.

10.1101/146175 — bioinformatics — Posted on 2017-06-07

1222 Theoretical quantification of interference in the TASEP: Application to mRNA translation shows near-optimality of termination rates

Dao Duc, K.; Saleem, Z. H.; Song, Y. S.

10.1101/147017 — systems biology — Posted on 2017-06-07

1223 Resetting the yeast epigenome with human nucleosomes

Truong, D. M.; Boeke, J. D.

10.1101/147264 — synthetic biology — Posted on 2017-06-07

1224 A Century of Guayule: Comprehensive Genetic Characterization of the Guayule (Parthenium argentatum A. Gray) USDA Germplasm Collection

Ilut, D. C.; Sanchez, P. L.; Coffelt, T. A.; Dyer, J. M.; Jenks, M. A.; Gore, M. A.

10.1101/147256 — plant biology — Posted on 2017-06-07

1225 Effects of Progesterone on the reproductive physiology in zebrafish

Zhong, C.; Xiong, K.; Wang, X.

10.1101/147280 — pharmacology and toxicology — Posted on 2017-06-07

1226 Unfolding the hippocampus: An intrinsic coordinate system for subfield segmentations and quantitative mapping

DeKraker, J.; Ferko, K. M.; Lau, J. C.; Köhler, S.; Khan, A. R.

10.1101/146878 — neuroscience — Posted on 2017-06-07

1227 Subgraphs of functional brain networks identify dynamical constraints of cognitive control

Khambhati, A.; Medaglia, J. D.; Karuza, E. A.; Thompson-Schill, S. L.; Bassett, D. S.

10.1101/147272 — neuroscience — Posted on 2017-06-07

1228 Integrated transcriptomic, proteomic and epigenomic analysis of Plasmodium vivax salivary-gland sporozoites

Jex, A.; Mueller, I.; Kappe, S.; Mikolajcjak, S.; Sattabongkot, J.; Patrapuvich, R.; Lindner, S.; Flannery, E.; Koepfli, C.; Ansell, B.; Lerch, A.; Swearingen, K.; Moritz, R.; Petter, M.; Duffy, M.; Chuenchob, V.

10.1101/145250 — microbiology — Posted on 2017-06-07

1229 Genetic Drift and Selection in Many-Allele Range Expansions

Weinstein, B. T.; Lavrentovich, M. O.; Möbius, W.; Murray, A. W.; Nelson, D. R.

10.1101/145631 — evolutionary biology — Posted on 2017-06-07

1230 Discovery of BAZ2A Bromodomain Ligands

Spiliotopoulos, D.; Wamhoff, E.-C.; Lolli, G.; Rademacher, C.; Caflisch, A.

10.1101/122317 — biochemistry — Posted on 2017-06-07

1231 Stochastic Simulation Of Dopamine Neuromodulation For Implementation Of Fluorescent Neurochemical Probes In The Striatal Extracellular Space

Beyene, A.; McFarlane, I. R.; Pinals, R.; Landry, M.

10.1101/144436 — neuroscience — Posted on 2017-06-07

1232 The hippocampus as a predictive map

Stachenfeld, K. L.; Botvinick, M. M.; Gershman, S. J.

10.1101/097170 — neuroscience — Posted on 2017-06-07

1233 Inferring the role of habitat dynamics in driving diversification: evidence for a species pump in Lake Tanganyika cichlids

Janzen, T.; Etienne, R.

10.1101/085431 — evolutionary biology — Posted on 2017-06-07

1234 A Novel Nasal Brush-based Classifier of Asthma Identified by Machine Learning Analysis of Nasal RNA Sequence Data

Pandey, G.; Pandey, O. P.; Rogers, A. J.; Hoffman, G. E.; Raby, B. A.; Weiss, S. T.; Schadt, E. E.; Bunyavanich, S.

10.1101/145771 — systems biology — Posted on 2017-06-07

1235 Design Principle of Lysis/Lysogeny Decision vis-a-vis Multiplicity of Infection

Wadhwa, D.

10.1101/146308 — systems biology — Posted on 2017-06-07

1236 Altered neurocognitive processing of tactile stimuli in patients with Complex Regional Pain Syndrome (CRPS)

Kuttikat, A.; Noreika, V.; Chennu, S.; Shenker, N.; Bekinschtein, T.; Brown, C.

10.1101/146613 — neuroscience — Posted on 2017-06-07

1237 Psychophysiological Interactions in a Visual Checkerboard Task: Reproducibility, Reliability, and the Effects of Deconvolution

Di, X.; Biswal, B. B.

10.1101/133454 — neuroscience — Posted on 2017-06-07

1238 Non-invasive laminar inference with MEG: Comparison of methods and source inversion algorithms

Bonaiuto, J. J.; Rossiter, H. E.; Meyer, S. S.; Adams, N.; Little, S.; Callaghan, M. F.; Dick, F.; Bestmann, S.; Barnes, G. R.

10.1101/147215 — neuroscience — Posted on 2017-06-07

1239 Model-Based Fixation-Pattern Similarity Analysis Reveals Adaptive Changes in Face-Viewing Strategies Following Aversive Learning

Kampermann, L.; Wilming, N.; Alink, A.; Buechel, C.; Onat, S.

10.1101/125682 — neuroscience — Posted on 2017-06-07

1240 COREMIC: a web-tool to search for a root-zone associated CORE MICrobiome

Rodrigues, R. R.; Rodgers, N.; Wu, X.; Williams, M. A.

10.1101/147009 — microbiology — Posted on 2017-06-07

1241 Coherent synthesis of genomic associations with phenotypes and home environments

Lasky, J. R.; Forester, B. R.; Reimherr, M.

10.1101/051110 — genomics — Posted on 2017-06-07

1242 Large-scale simultaneous measurement of epitopes and transcriptomes in single cells.

Stoeckius, M.; Hafemeister, C.; Stephenson, W.; Houck-Loomis, B.; Chattopadhyay, P. K.; Swerdlow, H.; Satija, R.; Smibert, P.

10.1101/113068 — genomics — Posted on 2017-06-07

1243 Genetics of the Research Domain Criteria (RDoC): genome-wide association study of delay discounting

Sanchez-Roige, S.; Fontanillas, P.; Elson, S. L.; - The 23andMe Research Team, ; Pandit, A.; Schmidt, E.; Forster, J.; Abecasis, G. R.; Gray, J. C.; de Wit, H.; Davis, L. K.; MacKillop, J.; Palmer, A. A.

10.1101/146936 — genetics — Posted on 2017-06-07

1244 Placental gene expression mediates the interaction between obstetrical history and genetic risk for schizophrenia

Ursini, G.; Punzi, G.; Chen, Q.; Marenco, S.; Robinson, J.; Porcelli, A.; Hamilton, E.; Mitjans, M.; Maddalena, G.; Begemann, M.; Seidel, J.; Yanamori, H.; Jaffe, A. E.; Berman, K. F.; Egan, M. F.; Straub, R. E.; Colantuoni, C.; Blasi, G.; Hashimoto, R.; Rujescu, D.; Ehrenreich, H.; Bertolino, A.; Weinberger, D. R.

10.1101/147207 — genetics — Posted on 2017-06-07

1245 Population-genomic inference of the strength and timing of selection against gene flow

Aeschbacher, S.; Selby, J. P.; Willis, J. H.; Coop, G.

10.1101/072736 — evolutionary biology — Posted on 2017-06-07

1246 Evolution and manipulation of vector host choice

Gandon, S.

10.1101/110577 — evolutionary biology — Posted on 2017-06-07

1247 Five years of land surface phenology in a large-scale flooding and draining manipulation in a coastal Arctic ecosystem

Goswami, S.; Gamon, J. A.; Vargas, S.; Tweedie, C. E.

10.1101/146662 — ecology — Posted on 2017-06-07

1248 3D clustering analysis of super-resolution microscopy data by 3D Voronoi tessellations

Andronov, L.; Michalon, J.; Ouararhni, K.; Orlov, I.; Hamiche, A.; Vonesch, J.-L.; Klaholz, B.

10.1101/146456 — bioinformatics — Posted on 2017-06-07

1249 Early warning signals regarding environmental suitability in the Drosophila antenna

Rong, H.; Das, P.; Lube, A.; Yang, D.; Saha, D.; Ben-Shahar, Y.; Raman, B.

10.1101/146522 — neuroscience — Posted on 2017-06-07

1250 Analytical solution of a bilateral Brown-type central pattern generator for symmetric and asymmetric locomotion

Sobinov, A.; Yakovenko, S.

10.1101/146993 — neuroscience — Posted on 2017-06-07

1251 1/f Neural Noise and Electrophysiological Indices of Contextual Prediction in Normative Aging

Dave, S.; Brothers, T.; Swaab, T.

10.1101/147058 — neuroscience — Posted on 2017-06-07

1252 Global interactions between feature-based and spatial attention redistribute feature sensitivity across visual space

van Es, D. M.; Theeuwes, J.; Knapen, T.

10.1101/147223 — neuroscience — Posted on 2017-06-07

1253 Brain-derived neurotrophic factor derived from peripheral sensory neurons plays a critical role in pain chronification

Sikandar, S.; Minett, M. S.; Lau, J.; Millet, Q.; Santana-Varela, S.; Wood, J. N.; Zhao, J.

10.1101/147165 — neuroscience — Posted on 2017-06-07

1254 Unleashing natural competence in Lactococcus lactis by induction of the competence regulator ComX

Mulder, J.; Wels, M.; Kuipers, O. P.; Kleerebezem, M.; Bron, P. A.

10.1101/147132 — microbiology — Posted on 2017-06-07

1255 Transient exposure to oxygen or nitrate reveals ecophysiology of fermentative and sulfate-reducing benthic microbial populations

Abdulrahman Beiruti, Z.; Bhatnagar, S.; Tegetmeyer, H. E.; Geelhoed, J. S.; Strous, M.; Ruff, S. E.

10.1101/146886 — microbiology — Posted on 2017-06-07

1256 Superposition of survival curves as a tool for epistasis analysis of longevity interventions

Nowak, S.; Neidhart, J.; Rzezonka, J.; Szendro, I. G.; Marathe, R.; Krug, J.

10.1101/147173 — genetics — Posted on 2017-06-07

1257 Experimental signal dissection and method sensitivity analyses reaffirm the potential of fossils and morphology in the resolution of seed plant phylogeny

Coiro, M.; Chomicki, G.; Doyle, J. A.

10.1101/134262 — evolutionary biology — Posted on 2017-06-07

1258 Global biogeography since Pangaea

McIntyre, S. R. N.; Lineweaver, C. H.; Groves, C. P.; Chopra, A.

10.1101/146142 — evolutionary biology — Posted on 2017-06-07

1259 Species-specific adaptations determine how aridity and biotic interactions drive the assembly of dryland plant communities

Berdugo, M.; Maestre, F. T.; Kefi, S.; Gross, N.; Le Bagousse-Pinguet, Y.; Soliveres, S.

10.1101/147181 — ecology — Posted on 2017-06-07

1260 PureCLIP: Capturing target-specific protein-RNA interaction footprints from single-nucleotide CLIP-seq data

Krakau, S.; Richard, H.; Marsico, A.

10.1101/146704 — bioinformatics — Posted on 2017-06-07

1261 FUSTr: a tool to find gene Families Under Selection in Transcriptomes

Cole, T. J.; Brewer, M. S.

10.1101/146951 — bioinformatics — Posted on 2017-06-07

1262 Genetic variation in human drug-related genes

Scharfe, C. P. I.; Tremmel, R.; Schwab, M.; Kohlbacher, O.; Marks, D. S.

10.1101/147108 — bioinformatics — Posted on 2017-06-07

1263 Homology-based hydrogen bond information improves crystallographic structures in the PDB

van Beusekom, B.; Touw, W. G.; Tatineni, M.; Somani, S.; Rajagopal, G.; Luo, J.; Gilliland, G. L.; Perrakis, A.; Joosten, R. P.

10.1101/147231 — biochemistry — Posted on 2017-06-07

1264 Genome-wide quantification of the effects of DNA methylation on human gene regulation

Lea, A. J.; Vockley, C. M.; Johnston, R. A.; Del Carpio, C. A.; Barreiro, L. B.; Reddy, T. E.; Tung, J.

10.1101/146829 — genomics — Posted on 2017-06-07

1265 Evidence of cryptic incidence in childhood diseases

Gunning, C. E.; Ferrari, M. J.; Erhardt, E. B.; Wearing, H. J.

10.1101/079194 — ecology — Posted on 2017-06-07

1266 MMseqs2: sensitive protein sequence searching for the analysis of massive data sets

Steinegger, M.; Soeding, J.

10.1101/079681 — bioinformatics — Posted on 2017-06-07

1267 Post-Transcriptional Control of Coenzyme Q Biosynthesis Revealed by Transomic Analysis of the RNA-Binding Protein Puf3p

Lapointe, C. P.; Stefely, J. A.; Jochem, A.; Hutchins, P. D.; Wilson, G. M.; Kwiecien, N. W.; Coon, J. J.; Wickens, M.; Pagliarini, D. J.

10.1101/146985 — biochemistry — Posted on 2017-06-07

1268 FGF21 regulates melanogenesis in alpaca melanocytes via ERK1/2-Mediated MITF downregulation

Wang, R.; Chen, T.; Zhao, B.; Fan, R.; Ji, K.; Yu, X.; Wang, X.; Dong, C.

10.1101/147082 — cell biology — Posted on 2017-06-07

1269 Mammalian genomic regulatory regions predicted by utilizing human genomics, transcriptomics and epigenetics data

Nguyen, Q. H.; Tellam, R. L.; Naval-Sanchez, M.; Porto-Neto, L.; Barendse, W.; Reverter, A.; Hayes, B.; Kijas, J.; Dalrymple, B. P.

10.1101/143990 — genomics — Posted on 2017-06-07

1270 A frequency-dependent mobilization of heterogeneous pools of synaptic vesicles shapes presynaptic plasticity

Doussau, F.; Schmidt, H.; Dorgans, K.; Valera, A. M.; Poulain, B.; Isope, P.

10.1101/146753 — neuroscience — Posted on 2017-06-07

1271 Higher levels of grp78 and lower levels of tlr4 anticipate a positive evolution of sepsis and patient survival

Stan, R.; Bonin, C.; Porto, R.; Soriano, F.; Camargo, M. M. d.

10.1101/133264 — molecular biology — Posted on 2017-06-07

1272 HIV persistence during antiviral therapy occurs due to cellular proliferation

Reeves, D. B.; Duke, E. R.; Wagner, T. A.; Palmer, S. E.; Spivak, A. M.; Schiffer, J. T.

10.1101/146977 — immunology — Posted on 2017-06-07

1273 Detecting polygenic adaptation in admixture graphs

Racimo, F.; Berg, J. J.; Pickrell, J. K.

10.1101/146043 — evolutionary biology — Posted on 2017-06-07

1274 Dealing with many correlated covariates in capture-recapture models

Gimenez, O.; Barbraud, C.

10.1101/097006 — ecology — Posted on 2017-06-07

1275 Molecular chaperones inject energy from ATP hydrolysis into the non-equilibrium stabilisation of native proteins

Goloubinoff, P.; Sassi, A.; Fauvet, B.; Barducci, A.; De Los Rios, P.

10.1101/146852 — biochemistry — Posted on 2017-06-07

1276 Design Principle of Lysis/Lysogeny Decision vis-a-vis Multiplicity of Infection

Wadhwa, D.

10.1101/146308 — systems biology — Posted on 2017-06-06

1277 Mechanical Activation Of Piezo1 But Not Nav1.2 Channels By Ultrasound

Prieto, M. L.; Firouzi, K.; Khuri-Yakub, B. T.; Maduke, M.

10.1101/136994 — neuroscience — Posted on 2017-06-06

1278 An integrated genomic analysis of anaplastic meningioma identifies prognostic molecular signatures

Collord, G.; Tarpey, P.; Kurbatova, N.; Martincorena, I.; Moran, S.; Castro, M.; Nagy, T.; Bignell, G.; Maura, F.; Berna, J.; Tubio, J. M.; McMurran, C. E.; Young, A. M. H.; Young, M. D.; Noorani, I.; Price, S. J.; Watts, C.; Leipnitz, E.; Kirsch, M.; Schackert, G.; Pearson, D.; Devadass, A.; Ram, Z.; Collins, V. P.; Allinson, K.; Jenkinson, M.; Zakaria, R.; Syed, K.; Hanemann, C. O.; Dunn, J.; McDermott, M.; Kirollos, R.; Vassiliou, G. S.; Esteller, M.; Behjati, S.; Brazma, A.; Santarius, T.; McDermott, U.

10.1101/146811 — genomics — Posted on 2017-06-06

1279 Simultaneous GCaMP6-based Fiber Photometry and fMRI in Rats

Liang, Z.; Ma, Y.; Watson, G. D. R.; Zhang, N.

10.1101/146779 — neuroscience — Posted on 2017-06-06

1280 DLPFC Transcriptome Defines Two Molecular Subtypes of Schizophrenia

Rhodes, C. H.; Bowen, E. F. W.; Lee, C. I.; Burgess, J. L.; Granger, R.

10.1101/116699 — neuroscience — Posted on 2017-06-06

1281 Histone H3 threonine 11 phosphorylation is catalyzed directly by the meiosis-specific kinase Mek1 and provides a molecular readout of Mek1 activity in vivo

Kniewel, R.; Murakami, H.; Liu, Y.; Hollingsworth, N. M.; Keeney, S.

10.1101/106245 — molecular biology — Posted on 2017-06-06

1282 The ash dieback invasion of Europe was founded by two individuals from a native population with huge adaptive potential

McMullan, M.; Rafiqi, M.; Kaithakottil, G.; Clavijo, B. J.; Bilham, L.; Orton, E.; Percival-Alwyn, L.; Ward, B. J.; Edwards, A.; Saunders, D. G. O.; Garcia, G.; Wright, J.; Verweij, W.; Koutsovoulos, G.; Yoshida, K.; Hosoya, T.; Williamson, L.; Jennings, P.; Ioos, R.; Husson, C.; Hietala, A. M.; Vivian-Smith, A.; Solheim, H.; MacLean, D.; Fosker, C.; Hall, N.; Brown, J. K. M.; Swarbreck, D.; Blaxter, M.; Downie, A.; Clark, M. D.

10.1101/146746 — genomics — Posted on 2017-06-06

1283 Reframing Breast Cancer Molecular Subtypes: Modeling Expression Patterns with Orthogonal Dimensions

Madsen, M. J.; Knight, S.; Sweeney, C.; Factor, R.; Salama, M.; Rajamanickam, V.; Welm, B. E.; Arunachalam, S.; Jones, B.; Rowe, K.; Cessna, M.; Thomas, A.; Kushi, L. H.; Caan, B. J.; Bernard, P. S.; Camp, N. J.

10.1101/133397 — genetics — Posted on 2017-06-06

1284 Genetic contribution to two factors of neuroticism is associated with affluence, better health, and longer life

Hill, W. D.; Weiss, A.; McIntosh, A. M.; Gale, C. R.; Deary, I. J.

10.1101/146787 — genetics — Posted on 2017-06-06

1285 The consequences of polyandry for sibship structures, distributions of relationships and relatedness, and potential for inbreeding in a wild population

Germain, R. R.; Arcese, P.; Reid, J. M.

10.1101/145987 — evolutionary biology — Posted on 2017-06-06

1286 Interactions retain the co-phylogenetic matching that communities lost

Poisot, T.; Stouffer, D.

10.1101/033050 — evolutionary biology — Posted on 2017-06-06

1287 Epigenetic resetting of human pluripotency

Guo, G.; von Meyenn, F.; Rostovskaya, M.; Clarke, J.; Dietmann, S.; Baker, D.; Sahakyan, A.; Myers, S.; Bertone, P.; Reik, W.; Plath, K.; Smith, A.

10.1101/146712 — developmental biology — Posted on 2017-06-06

1288 Non-classical estrogen signaling inhibits melanoma and improves response to PD-1 blockade

Natale, C. A.; Li, J.; Zhang, J.; Dahal, A.; Stanger, B. Z.; Ridky, T. W.

10.1101/146498 — cancer biology — Posted on 2017-06-06

1289 pyMAP: a Python package for small and large scale analysis of Illumina 450k methylation platform

Mahpour, A.

10.1101/078048 — bioinformatics — Posted on 2017-06-06

1290 HMMER Cut-off Threshold Tool (HMMERCTTER): Supervised Classification of Superfamily Protein Sequences with a reliable Cut-off Threshold

Pagnuco, I. A.; Revuelta, M. V.; Bondino, H. G.; Brun, M.; ten Have, A.

10.1101/130443 — bioinformatics — Posted on 2017-06-06

1291 Combining 16S rRNA gene variable regions enables high-resolution microbial community profiling

Fuks, G.; Elgart, M.; Amir, A.; Zeisel, A.; Turnbaugh, P. J.; Soen, Y.; Shental, N.

10.1101/146738 — bioinformatics — Posted on 2017-06-06

1292 Mcm10 functions to isomerize CMG-DNA for replisome bypass of DNA blocks

Langston, L. D.; Mayle, R.; Schauer, G. D.; Yurieva, O.; Zhang, D.; Yao, N. Y.; Georgescu, R. E.; O'Donnell, M. E.

10.1101/146837 — biochemistry — Posted on 2017-06-06

1293 LSD1/KDM1A Maintains Genome-wide Homeostasis of Transcriptional Enhancers

Agarwal, S.; Garay, P. M.; Porter, R. S.; Brookes, E.; Murata-Nakamura, Y.; Macfarlan, T. S.; Ren, B.; Iwase, S.

10.1101/146357 — molecular biology — Posted on 2017-06-06

1294 Design Principle of Lysis/Lysogeny Decision vis-a-vis Multiplicity of Infection

Wadhwa, D.

10.1101/146308 — systems biology — Posted on 2017-06-06

1295 Visual pathways from the perspective of cost functions and multi-task deep neural networks

Scholte, H. S.; Losch, M. M.; Ramakrishnan, K.; de Haan, E.; Bohte, S.

10.1101/146472 — neuroscience — Posted on 2017-06-06

1296 Local-Global Parcellation of the Human Cerebral Cortex From Intrinsic Functional Connectivity MRI

Schaefer, A.; Kong, R.; Gordon, E. M.; Laumann, T. O.; Zuo, X.-N.; Holmes, A.; Eickhoff, S. B.; Yeo, B. T. T.

10.1101/135632 — neuroscience — Posted on 2017-06-06

1297 Learn to Track: Deep Learning for Tractography

Poulin, P.; Cote, M.-A.; Houde, J.-C.; Petit, L.; Neher, P. F.; Maier-Hein, K. H.; Larochelle, H.; Descoteaux, M.

10.1101/146688 — neuroscience — Posted on 2017-06-06

1298 Isolation and functional characterization of the rat Thyroglobulin gene upstream enhancer region

Christophe-Hobertus, C.; Christophe, D.

10.1101/146589 — molecular biology — Posted on 2017-06-06

1299 Plasmids, Viruses, And Other Circular Elements In Rat Gut

Jorgensen, T. S.; Hansen, M. A.; Xu, Z.; Tabak, M.; Sorensen, S. J.; Hansen, L. H.

10.1101/143420 — microbiology — Posted on 2017-06-06

1300 Non-canonical secondary structures arising from non-B DNA motifs are determinants of mutagenesis

Georgakopoulos-Soares, I.; Morganella, S.; Jain, N.; Hemberg, M.; Nik-Zainal, S.

10.1101/146621 — genomics — Posted on 2017-06-06

1301 The iPSYCH2012 case-cohort sample: New directions for unravelling genetic and environmental architectures of severe mental disorders

Pedersen, C. B.; Bybjerg-Grauholm, J.; Pedersen, M. G.; Grove, J.; Agerbo, E.; Baekvad-Hansen, M.; Poulsen, J. B.; Hansen, C. S.; McGrath, J.; Als, T. D.; Goldstein, J.; Neale, B.; Daly, M.; Hougaard, D.; Mors, O.; Nordentoft, M.; Boerglum, A.; Werge, T.; Mortensen, P. B.

10.1101/146670 — genetics — Posted on 2017-06-06

1302 Extreme conservation of miRNA complements in Opisthorchiids

Ovchinnikov, V.; Mordvinov, V. A.; Fromm, B.

10.1101/146654 — evolutionary biology — Posted on 2017-06-06

1303 Does circadian regulation lead to optimal gas exchange regulation?

Resco de Dios, V.; Gessler, A.; Ferrio, P.; Alday, J.; Bahn, M.; del Castillo, J.; Devidal, S.; Garcia-Munoz, S.; Kayler, Z.; Landais, D.; Martin-Gomez, P.; Milcu, A.; Piel, C.; Pirhofer-Walzl, K.; Ravel, O.; Salekin, S.; Tissue, D.; Tjoelker, M.; Voltas, J.; Roy, J.

10.1101/121368 — ecology — Posted on 2017-06-06

1304 Five years of land surface phenology in a large-scale flooding and draining manipulation in a coastal Arctic ecosystem

Goswami, S.; Gamon, J. A.; Vargas, S.; Tweedie, C. E.

10.1101/146662 — ecology — Posted on 2017-06-06

1305 Pre-dispersal conditions and presence of opposite sex modulate density dependence and sex bias of dispersal

Mishra, A.; Tung, S.; Shree Sruti, V. R.; Sadiq, M. A.; Srivathsa, S.; Dey, S.

10.1101/146605 — ecology — Posted on 2017-06-06

1306 A Guide To Analysis And Reconstruction Of Serial Block Face Scanning Electron Microscopy Data

Cocks, E.; Taggart, M.; Rind, C.; White, K.

10.1101/133231 — cell biology — Posted on 2017-06-06

1307 Evaluation of in silico algorithms for use with ACMG/AMP clinical variant interpretation guidelines

Ghosh, R.; Oak, N.; Plon, S. E.

10.1101/146100 — bioinformatics — Posted on 2017-06-06

1308 Cooling Induced by Uphill Energy Transport in Plant Photosystems

Sen, K.; Bhattacharya, A.; Singha, S.; Dasgupta, M.; Dasgupta, A.

10.1101/146548 — bioengineering — Posted on 2017-06-06

1309 Nitric oxide sensing by chlorophyll a

Bhattacharya, A.; Kar, P.; Biswas, P.; Roychoudhury, P.; Basu, S.; Ghosh, S.; Panda, K.; Pal, R.; Dasgupta, A. K.

10.1101/146563 — bioengineering — Posted on 2017-06-06

1310 Fundamental Constraints In Synchronous Muscle Limit Superfast Motor Control In Vertebrates

Mead, A. F.; Osinalde, N.; Ortenblad, N.; Nielsen, J.; Brewer, J.; Vellema, M.; Adam, I.; Scharff, C.; Song, Y.; Frandsen, U.; Blagoev, B.; Kratchmarova, I.; Elemans, C. P. H.

10.1101/135343 — physiology — Posted on 2017-06-06

1311 Dynamical networks: finding, measuring, and tracking neural population activity using network science

Humphries, M. D.

10.1101/115485 — neuroscience — Posted on 2017-06-06

1312 Experimental support that natural selection has shaped the latitudinal distribution of mitochondrial haplotypes in Australian Drosophila melanogaster

Camus, M. F.; Wolff, J. N.; Sgro, C. M.; Dowling, D. K.

10.1101/103606 — evolutionary biology — Posted on 2017-06-06

1313 Whole Genome Sequences Of Malawi Cichlids Reveal Multiple Radiations Interconnected By Gene Flow

Malinsky, M.; Svardal, H.; Tyers, A. M.; Miska, E. A.; Genner, M. J.; Turner, G. F.; Durbin, R.

10.1101/143859 — evolutionary biology — Posted on 2017-06-06

1314 Widespread impact of DNA replication on mutational mechanisms in cancer

Tomkova, M.; Tomek, J.; Kriaucionis, S.; Schuster-Boeckler, B.

10.1101/111302 — cancer biology — Posted on 2017-06-06

1315 speaq 2.0: a complete workflow for high-throughput 1D NMR spectra processing and quantification

Beirnaert, C.; Meysman, P.; Vu, T. N.; Hermans, N.; Apers, S.; Pieters, L.; Covaci, A.; Laukens, K.

10.1101/138503 — bioinformatics — Posted on 2017-06-06

1316 Assembling Metagenomes, One Community At A Time

van der Walt, A. J.; Van Goethem, M. W.; Ramond, J.-B.; Makhalanyane, T. P.; Reva, O.; Cowan, D. A.

10.1101/120154 — bioinformatics — Posted on 2017-06-06

1317 Persistent one-way walking in a circular arena in Drosophila melanogaster Canton-S strain

Xiao, C.; Qiu, S.; Robertson, R. M.

10.1101/145888 — animal behavior and cognition — Posted on 2017-06-06

1318 The promise of disease gene discovery in South Asia

Nakatsuka, N. J.; Moorjani, P.; Rai, N.; Sarkar, B.; Tandon, A.; Patterson, N.; Bhavani, G. S.; Girisha, K. M.; Mustak, M. S.; Srinivasan, S.; Kaushik, A.; Vahab, S. A.; Jagadeesh, S. M.; Satyamoorthy, K.; Singh, L.; Reich, D.; Thangaraj, K.

10.1101/047035 — evolutionary biology — Posted on 2017-06-06

1319 Impairment of zebrafish reproduction upon exposure to melengestrol acetate

Xiong, K.; Zhong, C.; Wang, X.

10.1101/146506 — developmental biology — Posted on 2017-06-06

1320 Matryoshka: Ratiometric biosensors from a nested 1 cassette of green- and orange-emitting fluorescent proteins

Ast, C.; Foret, J.; Oltrogge, L.; De Michele, R.; Kleist, T.; Ho, C.-H.; Frommer, W.

10.1101/143107 — cell biology — Posted on 2017-06-06

1321 SeqAnt 2.0: Whole-Genome Annotation and Natural-Language Searching in the Cloud

Kotlar, A. V.; Trevino, C. E.; Zwick, M. E.; Cutler, D. J.; Wingo, T. S.

10.1101/146514 — bioinformatics — Posted on 2017-06-06

1322 Stepwise approach to oocyte depletion in Sry mutated XY female mice

Sakashita, A.; Wakai, T.; Kawabata, Y.; Nishimura, C.; Sotomaru, Y.; Kono, T.

10.1101/146571 — developmental biology — Posted on 2017-06-06

1323 Bistability In Fluorescence From A Purple Non-Sulfur Bacteria

Bose, A.; Raja, S. O.; Ray, S.; Dasgupta, A. K.

10.1101/132498 — systems biology — Posted on 2017-06-05

1324 Modeling dispersion improves decoding of population neural responses

Ghanbari, A.; Stevenson, I.

10.1101/146415 — neuroscience — Posted on 2017-06-05

1325 A Cross-Sectional Study of Set Shifting Impairments and Falling in Individuals with and without Parkinson’s Disease

McKay, J.; Lang, K. C.; Ting, L.; Hackney, M.

10.1101/146332 — neuroscience — Posted on 2017-06-05

1326 Mechanical Activation Of Piezo1 But Not Nav1.2 Channels By Ultrasound

Prieto, M. L.; Firouzi, K.; Khuri-Yakub, B. T.; Maduke, M.

10.1101/136994 — neuroscience — Posted on 2017-06-05

1327 A mechanistic model for the evolution of multicellularity

Amado, A.; Batista, C.; Campos, P. R. A.

10.1101/115832 — evolutionary biology — Posted on 2017-06-05

1328 The Evolutionary Genomics of Grape (Vitis vinifera ssp. vinifera) Domestication

Zhou, Y.; Massonnet, M.; Sanjak, J.; Cantu, D.; Gaut, B. S.

10.1101/146373 — evolutionary biology — Posted on 2017-06-05

1329 Ancient genomes from southern Africa pushes modern human divergence beyond 260,000 years ago

Schlebusch, C. M.; Malmström, H.; Günther, T.; Sjödin, P.; Coutinho, A.; Edlund, H.; Munters, A. R.; Steyn, M.; Soodyall, H.; Lombard, M.; Jakobsson, M.

10.1101/145409 — evolutionary biology — Posted on 2017-06-05

1330 Stochastic Protein Labeling Enables Long-Term Single Molecule Observation in vivo

Liu, H.; Dong, P.; Ioannou, M. S.; Li, L.; Shea, J.; Pasolli, A.; Grimm, J.; Rivlin, P.; Lavis, L. D.; Koyama, M.; Liu, Z.

10.1101/116186 — biophysics — Posted on 2017-06-05

1331 Separable Fully Connected Layers Improve Deep Learning Models For Genomics

Alexandari, A. M.; Shrikumar, A.; Kundaje, A.

10.1101/146431 — bioinformatics — Posted on 2017-06-05

1332 LSD1/KDM1A Maintains Genome-wide Homeostasis of Transcriptional Enhancers

Agarwal, S.; Garay, P. M.; Porter, R. S.; Brookes, E.; Murata-Nakamura, Y.; Macfarlan, T. S.; Ren, B.; Iwase, S.

10.1101/146357 — biochemistry — Posted on 2017-06-05

1333 Role of inhibitory control in modulating spread of focal ictal activity

Liou, J.-y.; Ma, H.; Wenzel, M.; Zhao, M.; Baird-Daniel, E.; Smith, E.; Daniel, A.; Emerson, R. G.; Yuste, R.; Schwartz, T. H.; Schevon, C.

10.1101/146407 — neuroscience — Posted on 2017-06-05

1334 Distinct neuronal activity patterns induce different gene expression programs

Tyssowski, K. M.; Saha, R. N.; DeStefino, N. R.; Cho, J.-H.; Jones, R. D.; Chang, S. M.; Romeo, P.; Wurzelmann, M. K.; Ward, J. M.; Dudek, S. M.; Gray, J. M.

10.1101/146282 — neuroscience — Posted on 2017-06-05

1335 Bacterial lipopolysaccharide reduces the stability of avian and human influenza viruses

Bandoro, C.; Runstadler, J.

10.1101/146266 — microbiology — Posted on 2017-06-05

1336 MEA Viewer: a High-performance Interactive Application for Visualizing Electrophysiological Data

Bridges, D. C.; Tovar, K. R.; Wu, B.; Hansma, P. K.; Kosik, K. S.

10.1101/146381 — neuroscience — Posted on 2017-06-05

1337 qSR: A software for quantitative analysis of single molecule and super-resolution data

Andrews, J. O.; Narayanan, A.; Spille, J.-H.; Cho, W.-K.; Thaler, J. D.; Cisse, I. I.

10.1101/146241 — biophysics — Posted on 2017-06-05

1338 Genomic analysis of family data reveals additional genetic effects on intelligence and personality

Hill, W. D.; Arslan, R. C.; Xia, C.; Luciano, M.; Amador, C.; Navarro, P.; Hayward, C.; Nagy, R.; Porteous, D. J.; McIntosh, A. M.; Deary, I. J.; Haley, C. S.; Penke, L.

10.1101/106203 — genetics — Posted on 2017-06-05

1339 Reconstructing cell cycle and disease progression using deep learning

Eulenberg, P.; Koehler, N.; Blasi, T.; Filby, A.; Carpenter, A. E.; Rees, P.; Theis, F. J.; Wolf, F. A.

10.1101/081364 — bioinformatics — Posted on 2017-06-05

1340 BEARscc determines robustness of single-cell clusters using simulated technical replicates

Severson, D. T.; Owen, R. P.; White, M. J.; Lu, X.; Schuster-Boeckler, B.

10.1101/118919 — bioinformatics — Posted on 2017-06-05

1341 The processing of dynamic faces in the human brain: Support for an integrated neural framework of face processing.

Bernstein, M.; Erez, Y.; Blank, I.; Yovel, G.

10.1101/140939 — neuroscience — Posted on 2017-06-05

1342 Compartmental and spatial rule-based modeling with Virtual cell (VCell)

Blinov, M. L.; Schaff, J. C.; Vasilescu, D.; Moraru, I. I.; Bloom, J. E.; Loew, L. M.

10.1101/146225 — biophysics — Posted on 2017-06-05

1343 Network integration of multi-tumour omics data suggests novel targeting strategies

Faria do Valle, I.; Menichetti, G.; Simonetti, G.; Bruno, S.; Zironi, I.; Fernandes Durso, D.; Mombach, J. C. M.; Martinelli, G.; Castellani, G.; Remondini, D.

10.1101/146209 — systems biology — Posted on 2017-06-05

1344 Inference of Adaptive Shifts for Multivariate Correlated Traits

Bastide, P.; Ane, C.; Robin, S.; Mariadassou, M.

10.1101/146191 — evolutionary biology — Posted on 2017-06-05

1345 Musical Imagery Involves the Wernicke’s Area in Bilateral and Anti-Correlated Network Interactions in Musicians

Zhang, Y.; Chen, G.; Wen, H.; Lu, K.-H.; Liu, Z.

10.1101/142950 — neuroscience — Posted on 2017-06-05

1346 Mammalian genomic regulatory regions predicted by utilizing human genomics, transcriptomics and epigenetics data

Nguyen, Q. H.; Tellam, R. L.; Naval-Sanchez, M.; Porto-Neto, L.; Barendse, B. W.; Reverter-Gomez, T.; Hayes, B.; Kijas, J.; Dalrymple, B. P.

10.1101/143990 — genomics — Posted on 2017-06-05

1347 Emerging patterns of plasmid-host coevolution that stabilize antibiotic resistance

Stalder, T.; Rogers, L. M.; Renfrow, C.; Yano, H.; Smith, Z.; Top, E. M.

10.1101/146118 — evolutionary biology — Posted on 2017-06-05

1348 Male coercion, female resistance, and the evolutionary trap of sexual reproduction

Burke, N. W.; Bonduriansky, R.

10.1101/146076 — evolutionary biology — Posted on 2017-06-05

1349 The collective influence of 1, 25-dihydroxyvitamin D3 with physiological fluid shear stress on osteoblasts

Li, Y.; Yuan, J.; Wang, Q.; Sun, L.; Sha, Y.; Li, Y.; Wang, L.; Wang, Z.

10.1101/146159 — cell biology — Posted on 2017-06-05

1350 No evidence of MET and HER2 over-expression in non-small cell lung carcinoma and breast cancer, respectively, raises serious doubts on using RNA-seq profiles of tumor-educated platelets as a ‘liquid biopsy’ source

Chakraborty, S.

10.1101/146134 — cancer biology — Posted on 2017-06-05

1351 Prediction of RNA-protein sequence and structure binding preferences using deep convolutional and recurrent neural networks

Pan, X.; Rijnbeek, P.; Yan, J.; Shen, H.-B.

10.1101/146175 — bioinformatics — Posted on 2017-06-05

1352 Evaluation of in silico algorithms for use with ACMG/AMP clinical variant interpretation guidelines

Ghosh, R.; Oak, N.; Plon, S. E.

10.1101/146100 — bioinformatics — Posted on 2017-06-05

1353 The Emergent Connectome in Caenorhabditis elegans Embryogenesis

- DevoWorm Group, ; Alicea, B. J.

10.1101/146035 — bioinformatics — Posted on 2017-06-05

1354 Exploring thematic structure in 16S rRNA marker gene surveys

Woloszynek, S.; Mell, J. C.; Simpson, G.; Rosen, G. L.

10.1101/146126 — bioinformatics — Posted on 2017-06-05

1355 A cell-free platform for rapid synthesis and testing of active oligosaccharyltransferases

Schoborg, J.; Hershewe, J.; Stark, J. C.; Kightlinger, W.; Kath, J. E.; Jaroentomeechai, T.; Natarajan, A.; DeLisa, M. P.; Jewett, M. C.

10.1101/145227 — synthetic biology — Posted on 2017-06-05

1356 A self-organizing memory network

Federer, C.; Zylberberg, J.

10.1101/144683 — neuroscience — Posted on 2017-06-04

1357 Temporal changes in the nasal microbiota and host antimicrobial responses to intranasal mupirocin decolonisation: Observations in healthy staphylococcal carriers

Liu, S.-H.; Tang, Y.-C.; Lin, Y.-H.; Chen, K.-F.; Chen, C.-J.; Huang, Y.-C.; Chen, L. Y.

10.1101/126375 — microbiology — Posted on 2017-06-04

1358 Umap and Bismap: quantifying genome and methylome mappability

Karimzadeh, M.; Ernst, C.; Kundaje, A.; Hoffman, M. M.

10.1101/095463 — genomics — Posted on 2017-06-04

1359 Genome-Wide Association Study of Ionomics Traits on Diverse Soybean Populations from Germplasm Collections

Ziegler, G.; Nelson, R.; Granada, S.; Krishnan, H. B.; Gillman, J. D.; Baxter, I.

10.1101/079731 — genetics — Posted on 2017-06-04

1360 The Voltage-gated Proton Channel Hv1 Is Required for Insulin Secretion in Pancreatic β Cells

Wang, X.; Xi, W.; Zhao, Q.; Zhang, S.; Qin, J.; Lv, J.; Che, Y.; Zuo, W.; Li, S. J.

10.1101/097816 — cell biology — Posted on 2017-06-04

1361 A first-in-class inhibitor of parasite FtsH disrupts plastid biogenesis in human pathogens

Amberg-Johnson, K.; Hari, S. B.; Ganesan, S. M.; Lorenzi, H. A.; Sauer, R. T.; Niles, J. C.; Yeh, E.

10.1101/108910 — microbiology — Posted on 2017-06-04

1362 Detecting polygenic adaptation in admixture graphs

Racimo, F.; Berg, J. J.; Pickrell, J. K.

10.1101/146043 — evolutionary biology — Posted on 2017-06-04

1363 Evidence for a role of calcium in STING signaling

Kim, S.; Koch, P.; Li, L.; Peshkin, L.; Mitchison, T. J.

10.1101/145854 — cell biology — Posted on 2017-06-04

1364 GFF3sort: An efficient tool to sort GFF3 files for tabix indexing

Zhu, T.; Liang, C.; Meng, Z.; Guo, S.; Zhang, R.

10.1101/145938 — bioinformatics — Posted on 2017-06-04

1365 Bistability In Fluorescence From A Purple Non-Sulfur Bacteria

Bose, A.; Raja, S. O.; Ray, S.; Dasgupta, A. K.

10.1101/132498 — systems biology — Posted on 2017-06-04

1366 Proteolytically Coordinated Activation of Toxin-Antitoxin Modules

Ogle, C.; Mather, W.

10.1101/146027 — systems biology — Posted on 2017-06-04

1367 Proteomics of phosphorylation and protein dynamics during fertilization and meiotic exit in the Xenopus egg

Presler, M. S.; Van Itallie, E.; Klein, A. M.; Kunz, R.; Coughlin, P.; Peshkin, L.; Gygi, S.; Wühr, M.; Kirschner, M.

10.1101/145086 — systems biology — Posted on 2017-06-04

1368 The Reproducibility Of Research And The Misinterpretation Of P Values

Colquhoun, D.

10.1101/144337 — scientific communication and education — Posted on 2017-06-04

1369 Sugar metabolism changes in response to the ultraviolet B irradiation of peach (Prunus persica L.)

Wang, X.; Fu, X.; Chen, M.; Huan, L.; Liu, W.; Gao, Y.; Xiao, W.; Chen, X.; Li, L.; Gao, D.

10.1101/145870 — plant biology — Posted on 2017-06-04

1370 Molecular Recognition of Dopamine with Dual Near Infrared Excitation-Emission Two-Photon Microscopy

Del Bonis-O'Donnell, J. T.; Page, R. H.; Beyene, A. G.; Tindall, E. G.; McFarlane, I. R.; Landry, M. P.

10.1101/145912 — neuroscience — Posted on 2017-06-04

1371 Metabolic changes of the host-pathogen environment in a Cryptosporidium infection

Miller, C. N.; Panagos, C. G.; Kvac, M.; Howard, M. J.; Tsaousis, A. D.

10.1101/145979 — microbiology — Posted on 2017-06-04

1372 Isolation and semi quantitative PCR of Na+/H+ antiporter (SOS1 & NHX) genes under salinity stress in Kochia scoparia

Fahmideh, L.; Fooladvand, Z.

10.1101/145953 — genomics — Posted on 2017-06-04

1373 Construction of an exome-wide risk score for schizophrenia based on a weighted burden test

Curtis, D.

10.1101/145961 — genetics — Posted on 2017-06-04

1374 Targeted Enrichment of Large Gene Families for Phylogenetic Inference: Phylogeny and Molecular Evolution of Photosynthesis Genes in the Portullugo (Caryophyllales)

Moore, A.; de Vos, J. M.; Hancock, L. P.; Goolsby, E.; Edwards, E. J.

10.1101/145995 — evolutionary biology — Posted on 2017-06-04

1375 Generic assembly patterns in large ecological communities

Barbier, M.; Arnoldi, J.-F.; Bunin, G.; Loreau, M.

10.1101/145862 — ecology — Posted on 2017-06-04

1376 The Effects of Central Nervous System Stimulants on Drosophila melanogaster Reproduction

McMahon, B. D.; Willsie, J.

10.1101/145896 — developmental biology — Posted on 2017-06-04

1377 Global Cancer Transcriptome Quantifies Repeat Element Polarization Between Immunotherapy Responsive and T cell Suppressive Classes

Solovyov, A.; Vabret, N.; Arora, K. S.; Snyder, A.; Funt, S. A.; Bajorin, D. F.; Rosenberg, J. E.; Bhardwaj, N.; Ting, D. T.; Greenbaum, B. D.

10.1101/145946 — cancer biology — Posted on 2017-06-04

1378 scImpute: Accurate And Robust Imputation For Single Cell RNA-Seq Data

Li, W. V.; Li, J. J.

10.1101/141598 — bioinformatics — Posted on 2017-06-04

1379 The importance of Chargaff’s second parity rule for genomic signatures in metagenomics

Gori, F.; Mavroeidis, D.; Jetten, M. S. M.; Marchiori, E.

10.1101/146001 — bioinformatics — Posted on 2017-06-04

1380 Modelling personality, plasticity and predictability in shelter dogs

Goold, C.; Newberry, R. C.

10.1101/145367 — animal behavior and cognition — Posted on 2017-06-04

1381 Persistent one-way walking in a circular arena in Drosophila melanogaster Canton-S strain

Xiao, C.; Qiu, S.; Robertson, R. M.

10.1101/145888 — animal behavior and cognition — Posted on 2017-06-04

1382 Crosstalk and eavesdropping among quorum sensing peptide signals that regulate bacteriocin production in Streptococcus pneumoniae

Miller, E.; Kjos, M.; Abrudan, M.; Roberts, I. S.; Veening, J.-W.; Rozen, D.

10.1101/087247 — microbiology — Posted on 2017-06-04

1383 Reminders of past choices bias decisions for reward in humans.

Bornstein, A. M.; Khaw, M. W.; Shohamy, D.; Daw, N. D.

10.1101/033910 — neuroscience — Posted on 2017-06-04

1384 Reinstated episodic context guides sampling-based decisions for reward.

Bornstein, A. M.; Norman, K. A.

10.1101/033662 — neuroscience — Posted on 2017-06-04

1385 Polyclonal HIV envelope-specific breast milk antibodies limit founder SHIV acquisition and cell-associated virus loads in infant rhesus monkeys.

Himes, J. E.; Goswami, R.; Mangan, R. J.; Kumar, A.; Jeffries, T. L.; Eudailey, J. A.; Heimsath, H.; Nguyen, Q. N.; Pollara, J.; LaBranche, C.; Chen, M.; Vandergrift, N. A.; Peacock, J. W.; Schiro, F.; Midkiff, C.; Ferrari, G.; Montefiori, D. C.; Alvarez-Hernandez, X.; Aye, P. P.; Permar, S. R.

10.1101/145524 — immunology — Posted on 2017-06-03

1386 Dynamical predictors of an imminent phenotypic switch in bacteria

Wang, H.; Ray, J. C. J.

10.1101/145821 — systems biology — Posted on 2017-06-03

1387 Clarinet (CLA-1), a novel active zone protein required for synaptic vesicle clustering and release

Xuan, Z.; Manning, L.; Nelson, J.; Richmond, J. E.; Colon-Ramos, D.; Shen, K.; Kurshan, P. T.

10.1101/145789 — neuroscience — Posted on 2017-06-03

1388 The β3-integrin endothelial adhesome regulates microtubule dependent cell migration

Atkinson, S. J.; Gontarczyk, A. M.; Ellison, T. S.; Johnson, R. T.; Kirkup, B. M.; Alghamdi, A.; Fowler, W. J.; Silva, B. C.; Schneider, J. J.; Weilbaecher, K. N.; Mogensen, M. M.; Bass, M. D.; Edwards, D. R.; Robinson, S. D.

10.1101/145839 — cell biology — Posted on 2017-06-03

1389 Tandem histone-binding domains enhance the activity of a synthetic chromatin effector

Tekel, S. J.; Vargas, D. A.; Song, L.; LaBaer, J.; Haynes, K. A.

10.1101/145730 — synthetic biology — Posted on 2017-06-03

1390 Chondroitin Sulfate Flourishes Gut Sulfatase-Secreting Bacteria To Damage Mucus Layers, Leak Bacterial Debris, And Trigger Inflammatory Lesions In Mice

Liao, T.; Chen, Y.-P.; Tan, L.-L.; Li, C.-Q.; Wang, Q.; Huang, S.-Q.; Huang, X.-A.; Xu, Q.; Zeng, Q.-P.

10.1101/145714 — pathology — Posted on 2017-06-03

1391 Spike-Timing Patterns Conform to Gamma Distribution with Regional and Cell Type-Specific Characteristics

Li, M.; Xie, K.; Kuang, H.; Liu, J.; Wang, D.; Fox, G. E.; Li, X.; Li, Y.; Zhao, F.; Cui, H.; Tsien, J. Z.

10.1101/145813 — neuroscience — Posted on 2017-06-03

1392 Discovery Of The First Genome-Wide Significant Risk Loci For ADHD

Demontis, D.; Walters, R. K.; Martin, J.; Mattheisen, M.; Als, T. D.; Agerbo, E.; Belliveau, R.; Bybjerg-Grauholm, J.; Baekved-Hansen, M.; Cerrato, F.; Chambert, K.; Churchhouse, C.; Dumont, A.; Eriksson, N.; Gandal, M.; Goldstein, J.; Grove, J.; Hansen, C. S.; Hauberg, M.; Hollegaard, M.; Howrigan, D. P.; Huang, H.; Maller, J.; Martin, A. R.; Moran, J.; Pallesen, J.; Palmer, D. S.; Pedersen, C. B.; Pedersen, M. G.; Poterba, T.; Poulsen, J. B.; Ripke, S.; Robinson, E. B.; Satterstrom, F. K.; Stevens, C.; Turley, P.; Won, H.; - ADHD Working Group of the Psychiatric Genomics Con, ; - Early Life

10.1101/145581 — genetics — Posted on 2017-06-03

1393 Widespread signatures of negative selection in the genetic architecture of human complex traits

Zeng, J.; de Vlaming, R.; Wu, Y.; Robinson, M.; Lloyd-Jones, L.; Yengo, L.; Yap, C.; Xue, A.; Sidorenko, J.; McRae, A.; Powell, J.; Montgomery, G.; Metspalu, A.; Esko, T.; Gibson, G.; Wray, N.; Visscher, P.; Yang, J.

10.1101/145755 — genetics — Posted on 2017-06-03

1394 The Gene Regulatory Landscape of Local Adaptation

Gould, B. A.; Chen, Y.; Lowry, D. B.

10.1101/145805 — evolutionary biology — Posted on 2017-06-03

1395 GOLabeler: Improving Sequence-based Large-scale Protein Function Prediction by Learning to Rank

You, R.; Zhang, Z.; Xiong, Y.; Sun, F.; Mamitsuka, H.; Zhu, S.

10.1101/145763 — bioinformatics — Posted on 2017-06-03

1396 Improving the value of public RNA-seq expression data by phenotype prediction

Ellis, S. E.; Collado Torres, L.; Leek, J.

10.1101/145656 — bioinformatics — Posted on 2017-06-03

1397 Classifying Drosophila Olfactory Projection Neuron Subtypes by Single-cell RNA Sequencing

Li, H.; Horns, F.; Wu, B.; Xie, Q.; Li, J.; Li, T.; Luginbuhl, D.; Quake, S. R.; Luo, L.

10.1101/145045 — genomics — Posted on 2017-06-03

1398 An exact and efficient score test for variance components models

Schweiger, R.; Weissbrod, O.; Rahmani, E.; Müller-Nurasyid, M.; Kunze, S.; Gieger, C.; Waldenberger, M.; Rosset, S.; Halperin, E.

10.1101/140889 — genetics — Posted on 2017-06-03

1399 Parallel radiations of Cremastosperma and Mosannona (Annonaceae), tropical rainforest trees tracking Neogene upheaval of the South American continent

Pirie, M. D.; Maas, P. J. M.; Wilschut, R.; Melchers-Sharrott, H.; Chatrou, L.

10.1101/141127 — evolutionary biology — Posted on 2017-06-03

1400 Multiple antibodies identify Glypican-1 on serum exosomes from patients with pancreatic cancer

Melo, S.; Kahlert, C.; LeBleu, V.; Kalluri, R.

10.1101/145706 — cancer biology — Posted on 2017-06-02

1401 Characterization Of NvLWamide-Like Neurons Reveals Stereotypy In Nematostella Nerve Net Development

Havrilak, J.; Faltine-Gonzalez, D.; Wen, Y.; Fodera, D.; Simpson, A.; Magie, C.; Layden, M. J.

10.1101/145623 — developmental biology — Posted on 2017-06-02

1402 An Effective Model Of The Retinoic Acid Induced HL-60 Differentiation Program

Tasseff, R. A.; Jensen, H.; Congleton, J.; Dai, W.; Rogers, K.; Sagar, A.; Bunaciu, R.; Yen, A.; Varner, J.

10.1101/138784 — systems biology — Posted on 2017-06-02

1403 Multiplexed Live-Cell Visualization Of Endogenous Proteins With Nanometer Precision By Fluorobodies

Klein, A.; Hank, S.; Raulf, A.; Tissen, F.; Heilemann, M.; Wieneke, R.; Tampe, R.

10.1101/145698 — cell biology — Posted on 2017-06-02

1404 Guiding the design of bacterial signaling interactions using a coevolutionary landscape

Cheng, R. R.; Haglund, E.; Tiee, N.; Morcos, F.; Levine, H.; Adams, J. A.; Jennings, P. A.; Onuchic, J. N.

10.1101/116947 — bioinformatics — Posted on 2017-06-02

1405 Detecting Local Zika Virus Transmission In The Continental United States: A Comparison Of Surveillance Strategies

Russell, S. P.; Ryff, K. R.; Gould, C. V.; Martin, S. W.; Johansson, M. A.

10.1101/145102 — epidemiology — Posted on 2017-06-02

1406 Staphylococcus aureus Colonization And Familial Transmission Over A One Year Period

Hanson, B. M.; Kates, A. E.; O'Malley, S. M.; Mills, E.; Herwaldt, L. A.; Torner, J. C.; Dawson, J. D.; Farina, S. A.; Klostermann, C.; Smith, T. C.

10.1101/144782 — epidemiology — Posted on 2017-06-02

1407 The Nasal And Oropharyngeal Microbiomes Of Healthy Livestock Workers

Kates, A.; Dalman, M.; Torner, J.; Smith, T. C.

10.1101/145029 — epidemiology — Posted on 2017-06-02

1408 A Cross-Sectional Study Of Staphylococcus aureus Colonization And The Nasal And Oropharyngeal Microbiomes

Kates, A.; Dalman, M.; Torner, J.; Smith, T.

10.1101/145540 — epidemiology — Posted on 2017-06-02

1409 Significant Associations Between Driver Gene Mutations And DNA Methylation Alterations Across Many Cancer Types

Chen, Y.-C.; Gotea, V.; Margolin, G.; Elnitski, L.

10.1101/145680 — cancer biology — Posted on 2017-06-02

1410 Deciphering Molecular Cascades In A Novel Acclimatization Strategy For Rapid Ascent To High Altitude

Paul, S.; Gangwar, A.; Bhargava, K.; Ahmad, Y.

10.1101/145342 — systems biology — Posted on 2017-06-02

1411 Advances And Perspectives In Tissue Clearing Using CLARITY

Jensen, K. H. R.; Berg, R. W.

10.1101/144378 — neuroscience — Posted on 2017-06-02

1412 High Current Optogenetic Channels For Stimulation And Inhibition Of Primary Rat Cortical Neurons

Jin, L.; Joest, E. F.; Li, W.; Gao, S.; Offenhaeusser, A.; Maybeck, V.

10.1101/145441 — molecular biology — Posted on 2017-06-02

1413 Heme-Iron Plays A Key Role In The Regulation Of The Ess/Type VII Secretion System Of Staphylococcus aureus RN6390

Casabona, M. G.; Kneuper, H.; Alferes de Lima, D.; Harkins, C. P.; Zoltner, M.; Hjerde, E.; Holden, M. T. G.; Palmer, T.

10.1101/145433 — microbiology — Posted on 2017-06-02

1414 Novel Co-Culture Plate Enables Growth Dynamic-Based Assessment Of Contact-Independent Microbial Interactions

Moutinho, T. J.; Panagides, J. C.; Biggs, M. B.; Medlock, G. L.; Kolling, G. L.; Papin, J. A.

10.1101/145615 — microbiology — Posted on 2017-06-02

1415 Mycophenolate Mofetil Increases Inflammation Resolution In Zebrafish Via Neutrophil Apoptosis

Bojarczuk, A.; Johnston, S.

10.1101/145359 — immunology — Posted on 2017-06-02

1416 The Plastid Genome In Cladophorales Green Algae Is Encoded By Hairpin Plasmids

Del Cortona, A.; Leliaert, F.; Bogaert, K. A.; Turmel, M.; Boedeker, C.; Janouskovec, J.; Lopez-Bautista, J. M.; Verbruggen, H.; Vandepoele, K.; De Clerck, O.

10.1101/145037 — genomics — Posted on 2017-06-02

1417 Sexual Imprinting And Speciation In Two Peromyscus Species

Delaney, E. K.; Hoekstra, H. E.

10.1101/145243 — evolutionary biology — Posted on 2017-06-02

1418 On The Number Of Siblings And p-th Cousins In A Large Population Sample

Shchur, V.; Nielsen, R.

10.1101/145599 — evolutionary biology — Posted on 2017-06-02

1419 Using Connectivity To Identify Climatic Drivers Of Local Adaptation

Macdonald, S. L.; Llewelyn, J.; Phillips, B.

10.1101/145169 — evolutionary biology — Posted on 2017-06-02

1420 Fine-mapping the Favored Mutation in a Positive Selective Sweep

Akbari, A.; Iranmehr, A.; Bakhtiari, M.; Mirarab, S.; Bafna, V.

10.1101/139055 — evolutionary biology — Posted on 2017-06-02

1421 Bacterial Communication And Relevance Of Quantum Theory

Majumdar, S.; Roy, S.

10.1101/145458 — biophysics — Posted on 2017-06-02

1422 Pair Matcher (PaM): Fast Model-Based Optimisation Of Treatment/Case-Control Matches Using Demographic And Genetic Data

Ryan, D.; Elhaik, E.

10.1101/145177 — bioinformatics — Posted on 2017-06-02

1423 Accurate And Fast Feature Selection Workflow For High-Dimensional Omics Data

Perez-Riverol, Y.; Kun, M.; Vizcaino, J. A.; Hitz, M.-P.; Audain, E.

10.1101/144162 — bioinformatics — Posted on 2017-06-02

1424 Resolving Three-State Ligand-Binding Mechanisms By Isothermal Titration Calorimetry: A Simulation Study

Kovrigin, E. L.

10.1101/145516 — biochemistry — Posted on 2017-06-02

1425 Beyond Brain Size

Logan, C. J.; Avin, S.; Boogert, N.; Buskell, A.; Cross, F. R.; Currie, A.; Jelbert, S.; Lukas, D.; Mares, R.; Navarrete, A. F.; Shigeno, S.; Montgomery, S. H.

10.1101/145334 — animal behavior and cognition — Posted on 2017-06-02

1426 Subharmonics And Chaos In Simple Periodically-Forced Biomolecular Models

Nikolaev, E. V.; Rahi, S. J.; Sontag, E.

10.1101/145201 — systems biology — Posted on 2017-06-02

1427 Central Amygdala Circuits Modulate Food Consumption Through A Positive Valence Mechanism

Douglass, A. M.; Kucukdereli, H.; Ponserre, M.; Markovic, M.; Gründemann, J.; Strobel, C.; Alcala Morales, P. L.; Conzelmann, K.-K.; Lüthi, A.; Klein, R.

10.1101/145375 — neuroscience — Posted on 2017-06-02

1428 Orexin/Hypocretin Immunoreactivity In The Lateral Hypothalamus Is Reduced In Genetically Obese But Not In Diet-Induced Obese Mice

Gonzalez, J. A.; Prehn, J. H. M.

10.1101/145508 — neuroscience — Posted on 2017-06-02

1429 Objective (Real-World) Motion Responses In Scene Responsive Regions

Korkmaz Hacialihafiz, D.; Bartels, A.

10.1101/145573 — neuroscience — Posted on 2017-06-02

1430 Principled Multi-Omic Analysis Reveals Gene Regulatory Mechanisms Of Phenotype Variation

Hanson, C.; Cairns, J.; Wang, L.; Sinha, S.

10.1101/145607 — genomics — Posted on 2017-06-02

1431 Genetic Identification Of Brain Cell Types Underlying Schizophrenia

Skene, N. G.; Bryois, J.; Bakken, T. E.; Breen, G.; Crowley, J. J.; Gaspar, H.; Giusti-Rodriguez, P.; Hodge, R. D.; Miller, J. A.; Munoz-Manchado, A.; O'Donovan, M. C.; Owen, M. J.; Pardinas, A. F.; Ryge, J.; Walters, J. T. R.; Linnarsson, S.; Lein, E. S.; - Major Depressive Disorder Working Group of the PGC, ; Sullivan, P. F.; Hjerling-Leffler, J.

10.1101/145466 — genomics — Posted on 2017-06-02

1432 The Genomic Health Of Ancient Hominins

Berens, A. J.; Cooper, T. L.; Lachance, J.

10.1101/145193 — genomics — Posted on 2017-06-02

1433 An Intracellular Pathogen Response Pathway Promotes Proteostasis In C. elegans

Reddy, K. C.; Dror, T.; Sowa, J. N.; Panek, J.; Chen, K.; Lim, E. S.; Wang, D.; Troemel, E. R.

10.1101/145235 — genetics — Posted on 2017-06-02

1434 Contribution of trans regulatory eQTL to cryptic genetic variation in C. elegans

Snoek, B.; Sterken, M.; Bevers, R.; Volkers, R.; van't Hof, A.; Brenchley, R.; Riksen, J.; Cossins, A.; Kammenga, J.

10.1101/120147 — genetics — Posted on 2017-06-02

1435 Social Dilemma In The External Immune System Of The Red Flour Beetle? It Is A Matter Of Time

Gokhale, C. S.; Traulsen, A.; Joop, G.

10.1101/128397 — evolutionary biology — Posted on 2017-06-02

1436 Simulated Climate Change Affects How Biocrusts Modulate Infiltration And Desiccation Dynamics

Lafuente, A.; Berdugo, M.; Ladron de Guevara, M.; Gozalo, B.; Maestre, F. T.

10.1101/145318 — ecology — Posted on 2017-06-02

1437 Effective Online Bayesian Phylogenetics Via Sequential Monte Carlo With Guided Proposals

Fourment, M.; Claywell, B. C.; Dinh, V.; McCoy, C.; Matsen, F. A.; Darling, A. E.

10.1101/145219 — bioinformatics — Posted on 2017-06-02

1438 Haplotype And Repeat Separation In Long Reads

Tischler, G.

10.1101/145474 — bioinformatics — Posted on 2017-06-02

1439 KmerFinderJS: A Client-Server Method For Fast Species Typing Of Bacteria Over Slow Internet Connections

Bellod Cisneros, J. L.; Lund, O.

10.1101/145284 — bioinformatics — Posted on 2017-06-02

1440 Modelling Personality, Plasticity And Predictability In Shelter Dogs

Goold, C.; Newberry, R. C.

10.1101/145367 — animal behavior and cognition — Posted on 2017-06-02

1441 Post-mortem molecular profiling of three psychiatric disorders

Ramaker, R. C.; Bowling, K. M.; Lasseigne, B. N.; Hagenauer, M. H.; Hardigan, A. A.; Davis, N. S.; Gertz, J.; Cartagena, P. M.; Walsh, D. M.; Vawter, M. P.; Schatzberg, A. F.; Barchas, J. D.; Watson, S. J.; Bunney, B. G.; Akil, H.; Bunney, W. E.; Li, J. Z.; Cooper, S. J.; Myers, R. M.

10.1101/061416 — genomics — Posted on 2017-06-02

1442 pals-22, A Member Of An Expanded C. elegans Gene Family, Controls Silencing Of Repetitive DNA

Leyva-Diaz, E.; Stefanakis, N.; Carrera, I.; Glenwinkel, L.; Wang, G.; Driscoll, M.; Hobert, O.

10.1101/145094 — genetics — Posted on 2017-06-02

1443 Pathogen Dependent Phenotypic But No Genetic Correlation Between Sexual Activity And Immunity In Male Drosophila melanogaster Subjected To Differential Sexual Selection

Syed, Z. A.; Gupta, V.; Samant, M. A.; Dhiman, A.; Prasad, N. G.

10.1101/144311 — evolutionary biology — Posted on 2017-06-02

1444 Pleiotropic Chemoreceptors Facilitate The Maintenance Of Signal-Receptor Coupling In Pheromonal Communication

Zelle, K.; Liang, X.; Ben-Shahar, Y.

10.1101/124305 — genetics — Posted on 2017-06-02

1445 Demographic inference through approximate-Bayesian-computation skyline plots

Navascues, M.; Leblois, R.; Burgarella, C.

10.1101/112060 — evolutionary biology — Posted on 2017-06-02

1446 Large Meta-Analysis Provides Evidence For An Association Of Serum Vitamin D With Pulmonary Function

Xu, J.; Bartz, T. M.; Chittoor, G.; Eiriksdottir, G.; Manichaikul, A. W.; Sun, F.; Terzikhan, N.; Zhou, X.; Booth, S. L.; Brusselle, G. G.; de Boer, I. H.; Fornage, M.; Frazier-Wood, A. C.; Graff, M.; Gudnason, V.; Harris, T. B.; Hofman, A.; Hou, R.; Houston, D. K.; Jacobs, D. R.; Kritchevsky, S. B.; Latourelle, J.; Lemaitre, R. N.; Lutsey, P. L.; O'Connor, G.; Oelsner, E. C.; Pankow, J. S.; Psaty, B. M.; Rohde, R. R.; Rich, S. S.; Rotter, J. I.; Smith, L. J.; Stricker, B. H.; Voruganti, V. S.; Wang, T. J.; Zillikens, M. C.; Barr, R. G.; Dupuis, J.; Gharib, S. A.; Lahousse, L.; London, S. J.;

10.1101/144717 — epidemiology — Posted on 2017-06-02

1447 Senkyunolide A Protects Corticosterone-Induced Cell Apoptosis Via Modulating Protein Phosphatase 2A And α-Synuclein

Gong, S.; Zhang, J.; Guo, Z.; Fu, W.

10.1101/145326 — cell biology — Posted on 2017-06-02

1448 Beneficial Effects Of Ketogenic Diets For Cancer Patients - A Realist Review With Focus On Evidence And Confirmation

Klement, R. J.

10.1101/137950 — cancer biology — Posted on 2017-06-02

1449 Thermodynamic Projection Of The Antibody Interaction Network: The Fountain Energy Landscape Of Binding

Prechl, J.

10.1101/124503 — biophysics — Posted on 2017-06-02

1450 Slow conformational exchange and overall rocking motion in ubiquitin protein crystals

Kurauskas, V.; Izmailov, S. A.; Rogacheva, O. N.; Hessel, A.; Ayala, I.; Woodhouse, J.; Shilova, A.; Xue, Y.; Yuwen, T.; Coquelle, N.; Colletier, J.-P.; Skrynnikov, N. R.; Schanda, P.

10.1101/126813 — biophysics — Posted on 2017-06-02

1451 Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition

Audoux, J.; Philippe, N.; Chikhi, R.; Salson, M.; Gallopin, M.; Gabriel, M.; Le Coz, J.; Commes, T.; Gautheret, D.

10.1101/122937 — bioinformatics — Posted on 2017-06-02

1452 Structural Basis For The Specific Recognition Of DSR By The YTH Domain Containing Protein Mmi1

Wu, B.; Xu, J.; Su, S.; Liu, H.; Gan, J.; Ma, J.

10.1101/145276 — biochemistry — Posted on 2017-06-02

1453 Whole-Ganglion Imaging Of Voltage In The Medicinal Leech Using A Double-Sided Microscope

Tomina, Y.; Wagenaar, D. A.

10.1101/145144 — neuroscience — Posted on 2017-06-02

1454 Energetic Costs Of Cellular And Therapeutic Control Of Stochastic mtDNA Populations

Hoitzing, H.; Gammage, P. A.; Minczuk, M.; Johnston, I. G.; Jones, N. S.

10.1101/145292 — cell biology — Posted on 2017-06-02

1455 Two sides of the same coin: monetary incentives concurrently improve and bias confidence judgments.

Lebreton, M.; Langdon, S.; Slieker, M. J.; Nooitgedacht, J. S.; Goudriaan, A. E.; Denys, D.; Luigjes, J.; van Holst, R. J.

10.1101/099382 — animal behavior and cognition — Posted on 2017-06-02

1456 Alkyl Gallates Display Elicitor Activities In Tobacco Plants

Goupil, P.; Benouaret, R.; Richard, C.

10.1101/145425 — plant biology — Posted on 2017-06-02

1457 Reconstructing Spatial Transport Distributions In The Nuclear Pore Complex From 2D Images -- How Reliable Is It?

Tu, L.-C.; Huisman, M.; Chung, Y.-C.; Smith, C.; Grunwald, D.

10.1101/145110 — cell biology — Posted on 2017-06-02

1458 Driver Pattern Identification Over The Gene Co-Expression Of Drug Response In Ovarian Cancer By Integrating High Throughput Genomics Data

Lu, X.; Lu, J.; Liao, B.; Li, K.

10.1101/145268 — bioinformatics — Posted on 2017-06-02

1459 Coding sequence of firefly luciferase reporter gene affects specific hyper expression in cpl1 mutant.

Koiwa, H.; Fukudome, A.

10.1101/145011 — plant biology — Posted on 2017-06-02

1460 Evidence for the temporal regulation of insect segmentation by a conserved set of developmental transcription factors

Clark, E.; Peel, A. D.

10.1101/145151 — developmental biology — Posted on 2017-06-02

1461 Short tandem repeats with massive variation and functional consequences across strains of Arabidopsis thaliana

Press, M. O.; McCoy, R. C.; Hall, A. N.; Akey, J. M.; Queitsch, C.

10.1101/145128 — genomics — Posted on 2017-06-01

1462 Detection Of Human Disease Conditions By Single-Cell Morpho-Rheological Phenotyping Of Whole Blood

Toepfner, N.; Herold, C.; Otto, O.; Rosendahl, P.; Jacobi, A.; Krater, M.; Stachele, J.; Menschner, L.; Herbig, M.; Ciuffreda, L.; Ranford-Cartwright, L.; Grzybek, M.; Coskun, U.; Reithuber, E.; Garriss, G.; Mellroth, P.; Henriques-Normark, B.; Tregay, N.; Suttorp, M.; Bornhauser, M.; Chilvers, E. R.; Berner, R.; Guck, J.

10.1101/145078 — biophysics — Posted on 2017-06-01

1463 Genetically modified human type II collagen for N- and C-terminal covalent tagging

Wieczorek, A.; Chan, C. K.; Kovacic, S.; Li, C.; Dierks, T.; Forde, N. R.

10.1101/145136 — biochemistry — Posted on 2017-06-01

1464 Clostridium difficile colonizes alternative nutrient niches during infection across distinct murine gut microbiomes

Jenior, M. L.; Leslie, J. L.; Young, V. B.; Schloss, P. D.

10.1101/092304 — microbiology — Posted on 2017-06-01

1465 Anatomical Predictors Of Recovery From Visual Neglect After Prism Adaptation Therapy

Lunven, M.; Rode, G.; Bourlon, C.; Duret, C.; Migliaccio, R.; Chevrillon, E.; Thiebaut de Schotten, M.; Bartolomeo, P.

10.1101/144956 — neuroscience — Posted on 2017-06-01

1466 Experience-dependent plasticity in accessory olfactory bulb interneurons following male-male social interaction

Cansler, H. L.; Maksimova, M. A.; Meeks, J. P.

10.1101/127589 — neuroscience — Posted on 2017-06-01

1467 Ephemeral-Habitat Colonization And Neotropical Species Richness Of Caenorhabditis Nematodes

Ferrari, C.; Salle, R.; Callemeyn-Torre, N.; Jovelin, R.; Cutter, A. D.; Braendle, C.

10.1101/142190 — ecology — Posted on 2017-06-01

1468 Actin Impacts The Late Stages Of Prion Formation And Prion Propagation

Lyke, D. R.; Dorweiler, J. E.; Legan, E. R.; Wisniewski, B. T.; Davis, E. E.; Manogaran, A. L.

10.1101/145060 — cell biology — Posted on 2017-06-01

1469 Untangling The Gene-Epigenome Networks: Timing Of Epigenetic Regulation Of Gene Expression In Acquired Cetuximab Resistance

Stein-O'Brien, G.; Kagohara, L. T.; Li, S.; Thakar, M.; Ranaweera, R.; Ozawa, H.; Cheng, H.; Considine, M.; Favorov, A.; Danilova, L.; Califano, J.; Izumchenko, E.; Gaykalova, D. A.; Chung, C. H.; Fertig, E. J.

10.1101/136564 — cancer biology — Posted on 2017-06-01

1470 Causal Modeling Dissects Tumour-Microenvironment Interactions In Breast Cancer

Chlon, L.; Markowetz, F.

10.1101/144832 — bioinformatics — Posted on 2017-06-01

1471 Comparison Of The Human Gastric Microbiota In Hypochlorhydric States Arising As A Result Of Helicobacter pylori-Induced Atrophic Gastritis, Autoimmune Atrophic Gastritis And Proton Pump Inhibitor Use

Parsons, B. N.; Ijaz, U. Z.; D'Amore, R.; Burkitt, M.; Eccles, R.; Lenzi, L.; Duckworth, C. A.; Moore, A. R.; Tiszlavicz, L.; Varro, A.; Hall, N.; Pritchard, D. M.

10.1101/144907 — microbiology — Posted on 2017-06-01

1472 Receptor Uptake Arrays For Vitamin B12, Siderophores And Glycans Shape Bacterial Communities

Frank, S. A.

10.1101/144691 — microbiology — Posted on 2017-06-01

1473 Genomic And Transcriptomic Profiling Of Nematode Parasites Surviving After Vaccine Exposure

Salle, G.; Laing, R.; Cotton, J. A.; Maitland, K.; Martinelli, A.; Holroyd, N.; Tracey, A.; Berriman, M.; Smith, D. W.; Newlands, G. F. J.; Hanks, E.; Devaney, E.; Britton, C.

10.1101/144980 — genomics — Posted on 2017-06-01

1474 Genome Sequencing Links Persistent Outbreak Of Legionellosis In Sydney To An Emerging Clone Of Legionella pneumophila ST211

Timms, V. J.; Rockett, R.; Bachmann, N. L.; Martinez, E.; Wang, Q.; Chen, S. C.- A.; Jeoffreys, N.; Howard, P. J.; Smith, A.; Adamson, S.; Gilmour, R.; Sheppeard, V.; Sintchenko, V.

10.1101/144790 — genomics — Posted on 2017-06-01

1475 DNA Metabarcoding For High-Throughput Monitoring Of Estuarine Macrobenthic Communities

Lobo, J.; Shokralla, S.; Costa, M. H.; Hajibabaei, M.; Costa, F. O.

10.1101/117168 — genetics — Posted on 2017-06-01

1476 Using Citizen Science Monitoring Data In Species Distribution Models To Inform Isotopic Assignment Of Migratory Connectivity In Wetland Birds

Fournier, A. M. V.; Drake, K. L.; Tozer, D. C.

10.1101/144527 — ecology — Posted on 2017-06-01

1477 Dual Function For Tango1 In Secretion Of Bulky Cargo And In ER-Golgi Morphology

Rios-Barrera, L. D.; Sigurbjornsdottir, S.; Baer, M.; Leptin, M.

10.1101/144923 — cell biology — Posted on 2017-06-01

1478 Paracrine Activin-A Signaling Promotes Melanoma Growth And Metastasis Through Immune Evasion

Donovan, P.; Dubey, O. A.; Kallioinen, S.; Rogers, K. W.; Muehlethaler, K.; Mueller, P.; Rimoldi, D.; Constam, D. B.

10.1101/144857 — cancer biology — Posted on 2017-06-01

1479 Contextual Tumor Suppressor Function Of T Cell Death-Associated Gene 8 (TDAG8) In Hematological Malignancies

Justus, C. R.; Sanderlin, E. J.; Dong, L.; Sun, A.; Chi, J.-T.; Lertpiriyapong, K.; Yang, L. V.

10.1101/144725 — cancer biology — Posted on 2017-06-01

1480 Mesoscopic Model For DNA G-Quadruplex Unfolding

Bergues-Pupo, A. E.; Gutierrez, I.; Arias-Gonzalez, J. R.; Falo, F.; Fiasconaro, A.

10.1101/144931 — biophysics — Posted on 2017-06-01

1481 Structural Propensity Database Of Proteins

Tamiola, K.; Heberling, M. M.; Domanski, J.

10.1101/144840 — biophysics — Posted on 2017-06-01

1482 Molecular Basis For The Specific And Multivariate Recognitions Of RNA Substrates By Human hnRNPA2/B1

Wu, B.; Su, S.; Patil, D. P.; Liu, H.; Gan, J.; Jaffrey, S. R.; Ma, J.

10.1101/144345 — biochemistry — Posted on 2017-06-01

1483 Beyond the labeled line: variation in visual reference frames from intraparietal cortex to frontal eye fields and the superior colliculus

Caruso, V. C.; Pages, D. S.; Sommer, M.; Groh, J. M.

10.1101/124628 — neuroscience — Posted on 2017-06-01

1484 Distal axotomy enhances retrograde presynaptic excitability onto injured pyramidal neurons via trans-synaptic signaling

Nagendran, T.; Larsen, R. S.; Bigler, R. L.; Frost, S. B.; Philpot, B. D.; Nudo, R. J.; Taylor, A. M.

10.1101/065391 — neuroscience — Posted on 2017-06-01

1485 Reinforcement of conspecific sperm precedence weakens sexual selection in sympatric populations of Drosophila

Castillo, D. M.; Moyle, L. C.

10.1101/071886 — evolutionary biology — Posted on 2017-06-01

1486 Dengue virus hijacks a noncanonical oxidoreductase function of a cellular oligosaccharyltransferase complex

Lin, D. L.; Cherepanova, N. A.; Bozzacco, L.; MacDonald, M. R.; Gilmore, R.; Tai, A. W.

10.1101/130914 — microbiology — Posted on 2017-06-01

1487 Identifying cis-mediators for trans-eQTLs across many human tissues using genomic mediation analysis

Yang, F.; Wang, J.; - the GTEx consortium, ; Pierce, B. L.; Chen, L. S.

10.1101/078683 — genomics — Posted on 2017-06-01

1488 Cyclin G And The Polycomb Repressive Complexes PRC1 And PR-DUB Cooperate For Developmental Stability

Dardalhon-Cumenal, D.; Deraze, J.; Dupont, C. A.; Ribeiro, V.; Coleno-Costes, A.; Pouch, J.; Le Crom, S.; Thomassin-Bourrel, H.; Debat, V.; Randsholt, N. B.; Peronnet, F.

10.1101/144048 — developmental biology — Posted on 2017-06-01

1489 SATORI: A System for Ontology-Guided Visual Exploration of Biomedical Data Repositories

Lekschas, F.; Gehlenborg, N.

10.1101/046755 — bioinformatics — Posted on 2017-06-01

1490 On the study of evolutionary predictability using historical reconstruction

Venkataram, S.; Sellis, D.; Petrov, D. A.

10.1101/001016 — evolutionary biology — Posted on 2017-06-01

1491 Genome-Enabled Insights Into The Ecophysiology Of The Comammox Bacterium Candidatus Nitrospira nitrosa

Camejo, P. Y.; Santo Domingo, J.; McMahon, K. D.; Noguera, D. R.

10.1101/144600 — microbiology — Posted on 2017-06-01

1492 Meta-Analysis Of Sequence-Based Association Studies Across Three Cattle Breeds Reveals 25 QTL For Fat And Protein Percentages In Milk At Nucleotide Resolution

Pausch, H.; Emmerling, R.; Gredler-Grandl, B.; Fries, R.; Daetwyler, H. D.; Goddard, M. E.

10.1101/143404 — genomics — Posted on 2017-06-01

1493 Interphase-Arrested Drosophila Embryos Initiate Mid-Blastula Transition At A Low Nuclear-Cytoplasmic Ratio

Strong, I.; Yuan, K.; O'Farrell, P. H.

10.1101/143719 — developmental biology — Posted on 2017-06-01

1494 Reproducible Bioconductor Workflows Using Browser-Based Interactive Notebooks And Containers

Almugbel, R.; Hung, L.-H.; Hu, J.; Almutairy, A. M.; Ortogero, N. E.; Tamta, Y.; Yeung, K. Y.

10.1101/144816 — bioinformatics — Posted on 2017-06-01

1495 Seeing through moving eyes - microsaccadic information sampling provides Drosophila hyperacute vision

Juusola, M.; Dau, A.; Song, Z.; Solanki, N.; Rien, D.; Jaciuch, D.; Dongre, S.; Blanchard, F.; de Polavieja, G. G.; Hardie, R. C.; Takalo, J.

10.1101/083691 — neuroscience — Posted on 2017-06-01

1496 Individual movement variability magnitudes are predicted by cortical neural variability

Haar, S.; Donchin, O.; Dinstein, I.

10.1101/097824 — neuroscience — Posted on 2017-06-01

1497 Beyond Autoantibodies: Biological Roles Of Human Autoreactive B Cells In Rheumatoid Arthritis Revealed By Whole Transcriptome Profiling

Mahendra, A.; Yang, X.; Abnouf, S.; Park, D.; Soomro, S.; Adolacion, J. R. T.; Roszik, J.; Coarfa, C.; Romain, G.; Wanzeck, K.; Bridges, S. L.; Aggarwal, A.; Qiu, P.; Agarwal, S. K.; Mohan, C.; Varadarajan, N.

10.1101/144121 — immunology — Posted on 2017-06-01

1498 A simulation-based evaluation of STRUCTURE software for exploring the introduction routes of invasive species

Lombaert, E.; Guillemaud, T.; Deleury, E.

10.1101/094029 — evolutionary biology — Posted on 2017-06-01

1499 A Varroa Destructor Protein Atlas Reveals Molecular Underpinnings Of Developmental Transitions And Sexual Differentiation

McAfee, A.; Chan, Q. W. T.; Evans, J.; Foster, L. J.

10.1101/144808 — developmental biology — Posted on 2017-06-01

1500 Crowding-induced transcriptional bursts dictate nucleosome and polymerase density profiles along genes

van den Berg, A. A.; Depken, M.

10.1101/065268 — biophysics — Posted on 2017-06-01

1501 Software For The Integration Of Multi-Omics Experiments In Bioconductor

Ramos, M.; Schiffer, L.; Re, A.; Azhar, R.; Basunia, A.; Rodriguez Cabrera, C.; Chan, T.; Chapman, P.; Davis, S.; Gomez-Cabrero, D.; Culhane, A. C.; Haibe-Kains, B.; Hansen, K.; Kodali, H.; Louis, M. S.; Mer, A. S.; Riester, M.; Morgan, M.; Carey, V.; Waldron, L.

10.1101/144774 — bioinformatics — Posted on 2017-06-01

1502 Recency Order Judgments In Short Term Memory: Replication And Extension Of Hacker (1980)

Singh, I.; Howard, M. W.

10.1101/144733 — animal behavior and cognition — Posted on 2017-06-01

Archive, 2017-06