bioRxiv directory

Armitage, A. D.; Taylor, A.; Sobczyk, M. K.; Baxter, L.; Greenfield, B. P. J.; Bates, H. J.; Wilson, F.; Jackson, A. C.; Ott, S.; Harrison, R.; Clarkson, J. P.

10.1101/182238 — pathology — Posted on 2017-09-30

17 Ocular and uteroplacental pathology in macaque congenital Zika virus infection

Mohr, E. L.; Block, L. N.; Newman, C. M.; Stewart, L. M.; Koenig, M.; Semler, M.; Breitbach, M. E.; Teixeira, L. B. C.; Zeng, X.; Weiler, A. M.; Barry, G. L.; Thoong, T. H.; Wiepz, G. J.; Dudley, D. M.; Simmons, H. A.; Mejia, A.; Morgan, T. K.; Salamat, M. S.; Kohn, S.; Antony, K. M.; Aliota, M. T.; Mohns, M. S.; Hayes, J. M.; Schultz-Darken, N.; Schotzko, M. L.; Peterson, E.; Capuano, S.; Osorio, J. E.; O'Connor, S. L.; Friedrich, T. C.; O'Connor, D. H.; Golos, T. G.

10.1101/195701 — pathology — Posted on 2017-09-30

18 Multiscale simulation of peripheral neural signaling

Lubba, C.; Le Guen, Y.; Jarvis, S.; Jones, N.; Cork, S.; Eftekhar, A.; Schultz, S. R.

10.1101/196451 — neuroscience — Posted on 2017-09-30

19 Comparing average network signals and neural mass signals in systems with low-synchrony

Tewarie, P.; Daffertshofer, A.; van Dijk, B. W.

10.1101/196113 — neuroscience — Posted on 2017-09-30

20 Multiphoton minimal inertia scanning for fast acquisition of neural activity signals

Schuck, R.; Go, M. A.; Garasto, S.; Reynolds, S.; Dragotti, P. L.; Schultz, S.

10.1101/196428 — neuroscience — Posted on 2017-09-30

21 Transcriptomic characterization of MRI contrast, focused on the T1-w/T2-w ratio in the cerebral cortex

Ritchie, J.; Pantazatos, S.; French, L.

10.1101/196386 — neuroscience — Posted on 2017-09-30

22 Conflict between heterozygote advantage and hybridincompatibility in haplodiploids (and sex chromosomes)

Ghenu, A.-H.; Blanckaert, A.; Butlin, R. K.; Kulmuni, J.; Bank, C.

10.1101/196469 — evolutionary biology — Posted on 2017-09-30

23 Phylofactorization - theory and challenges

Washburne, A.

10.1101/196378 — evolutionary biology — Posted on 2017-09-30

24 Effects of anthropogenic wildfire activity in low elevation Pacific island vegetation communities in French Polynesia

Newman, E. A.; Winkler, C. A.; Hembry, D. H.

10.1101/196352 — ecology — Posted on 2017-09-30

25 Response to Qian et al (2017): Daily and seasonal climate variations are both critical in the evolution of species’ elevational range size

Chan, W.-P.; Chen, I.-C.; Colwell, R. K.; Liu, W.-C.; Huang, C.-y.; Shen, S.-F.

10.1101/195248 — ecology — Posted on 2017-09-30

26 Somatic inactivating PTPRJ mutations and dysregulated pathways identified in canine melanoma by integrated comparative genomic analysis

Hendricks, W. P. D.; Zismann, V.; Sivaprakasam, K.; Legendre, C.; Poorman, K.; Tembe, W.; Kiefer, J.; Liang, W.; DeLuca, V.; Stark, M.; Ruhe, A.; Froman, R.; Duesbury, N.; Washington, M.; Aldrich, J.; Neff, M.; Huentelman, M.; Hayward, N.; Brown, K.; Thamm, D.; Post, G.; Khanna, C.; Davis, B.; Breen, M.; Sekulic, A.; Trent, J.

10.1101/196337 — cancer biology — Posted on 2017-09-30

27 Nucleation of multiple buckled structures in intertwined DNA double helices

Brahmachari, S.; Gunn, K. H.; Giuntoli, R. D.; Mondragon, A.; Marko, J. F.

10.1101/196345 — biophysics — Posted on 2017-09-30

28 Lancet: genome-wide somatic variant calling using localized colored DeBruijn graphs

Narzisi, G.; Corvelo, A.; Arora, K.; Bergmann, E.; Shah, M.; Musunuri, R.; Emde, A.-K.; Robine, N.; Vacic, V.; Zody, M. C.

10.1101/196311 — bioinformatics — Posted on 2017-09-30

29 Short-term stabilities of 21 amino acids in dried blood spots

Han, J.; Higgins, R.; Lim, M. D.; Lin, K.; Yang, J.; Borchers, C. H.

10.1101/196295 — biochemistry — Posted on 2017-09-30

30 A combinatorial approach for the synthesis of multi-phosphorylated peptides: new tool for studying phosphorylation patterns in proteins

Samarasimhareddy, M.; Mayer, D.; Metanis, N.; Veprintsev, D.; Hurevich, M.; Friedler, A.

10.1101/196444 — biochemistry — Posted on 2017-09-30

31 Preliminary results of models to predict areas in the Americas with increased likelihood of Zika virus transmission in 2017.

Asher, J.; Barker, C.; Chen, G.; Cummings, D.; Chinazzi, M.; Daniel-Wayman, S.; Fischer, M.; Ferguson, N.; Follman, D.; Halloran, M. E.; Johansson, M.; Kugeler, K.; Kwan, J.; Lessler, J.; Longini, I. M.; Merler, S.; Monaghan, A.; Pastore y Piontti, A.; Perkins, A.; Prevots, D. R.; Reiner, R.; Rossi, L.; Rodriguez-Barraquer, I.; Siraj, A. S.; Sun, K.; Vespignani, A.; Zhang, Q.

10.1101/187591 — epidemiology — Posted on 2017-09-29

32 The burden of dengue and chikungunya in southern coastal Ecuador: Epidemiology, clinical presentation, and phylogenetics from a prospective study in Machala in 2014 and 2015

Stewart-Ibarra, A. M.; Ryan, S. J.; Kenneson, A.; King, C. A.; Abbott, M.; Barbachano-Guerrero, A.; Beltran-Ayala, E.; Borbor-Cordova, M. J.; Cardenas, W.; Cueva, C.; Finkelstein, J. L.; Lupone, C. D.; Jarman, R. G.; Maljkovic Berry, I.; Mehta, S.; Polhemus, M.; Silva, M.; Endy, T. P.

10.1101/102004 — epidemiology — Posted on 2017-09-29

33 A Connectome Wide Functional Signature of Broad Risk for Mental Illness

Elliott, M. L.; Romer, A. L.; Knodt, A. R.; Hariri, A. R.

10.1101/196220 — neuroscience — Posted on 2017-09-29

34 CYK-4 functions independently of its centralspindlin partner ZEN-4 to cellularize oocytes in germline syncytia

Lee, K.-Y.; Green, R. A.; Gutierrez, E.; Gomez-Cavazos, J. S.; Kolotuev, I.; Wang, S.; Desai, A.; Groisman, A.; Oegema, K.

10.1101/196279 — cell biology — Posted on 2017-09-29

35 Discovery of global regulators of 3’ untranslated region processing in cancers with KAPAC

Gruber, A. J.; Schmidt, R.; Ghosh, S.; Martin, G.; Gruber, A. R.; van Nimwegen, E.; Zavolan, M.

10.1101/195958 — systems biology — Posted on 2017-09-29

36 Functional analyses of the CIF1-CIF2 complex in Trypanosoma brucei identify the structural motifs required for complex formation and cytokinesis

Hu, H.; Majneri, P.; Li, D.; Kurasawa, Y.; An, T.; Dong, G.; Li, Z.

10.1101/196238 — cell biology — Posted on 2017-09-29

37 A novel dimeric active site and regulation mechanism revealed by the crystal structure of iPLA2β

Malley, K. R.; Koroleva, O.; Miller, I.; Sanishvili, R.; Jenkins, C. M.; Gross, R. W.; Korolev, S.

10.1101/196097 — biochemistry — Posted on 2017-09-29

38 MicroRNAs from the parasitic plant Cuscuta campestris target host messenger RNAs

Shahid, S.; Kim, G.; Johnson, N. R.; Wafula, E.; Wang, F.; Coruh, C.; Bernal-Galeano, V.; Phifer, T.; dePamphilis, C. W.; Westwood, J. H.; Axtell, M.

10.1101/180497 — plant biology — Posted on 2017-09-29

39 Improving the Generation and Selection of Virtual Populations in Quantitative Systems Pharmacology Models

Rieger, T. R.; Allen, R. J.; Bystricky, L.; Chen, Y.; Colopy, G.; Cui, Y.; Gonzalez, A.; Liu, Y.; White, R.; Everett, R.; Banks, H. T.; Musante, C. J.

10.1101/196089 — pharmacology and toxicology — Posted on 2017-09-29

40 Cognitive deficits and increases in creatine precursors in a brain-specific knockout of the creatine transporter gene Slc6a8

Udobi, K. C.; Kokenge, A. N.; Hautman, E.; Ullo, G.; Coene, J.; Williams, M. T.; Vorhees, C. V.; Mabondzo, A.; Skelton, M. R.

10.1101/196063 — neuroscience — Posted on 2017-09-29

41 Transplanted Adult Neural Stem Cells Express Sonic Hedgehog In Vivo and Suppress White Matter Neuroinflammation After Experimental Traumatic Brain Injury

Sullivan, G. M.; Armstrong, R. C.

10.1101/196170 — neuroscience — Posted on 2017-09-29

42 How stimulation frequency and intensity impact on the long-lasting effects of coordinated reset stimulation

Manos, T.; Zeitler, M.; Tass, P.

10.1101/196188 — neuroscience — Posted on 2017-09-29

43 Defective synapse maturation and enhanced synaptic plasticity in Shank2-/- mice

Wegener, S.; Buschler, A.; Stempel, A. V.; Shoichet, S. A.; Manahan-Vaughan, D.; Schmitz, D.

10.1101/193078 — neuroscience — Posted on 2017-09-29

44 Spatial RNA proximities reveal a bipartite nuclear transcriptome and territories of differential density and transcription elongation rates

Morf, J.; Wingett, S. W.; Farabella, I.; Cairns, J.; Furlan-Magaril, M.; Liu, X.; Craig, F. F.; Andrews, S.; Marti-Renom, M. A.; Fraser, P.

10.1101/196147 — molecular biology — Posted on 2017-09-29

45 Prediction of the intestinal resistome by a novel 3D-based method

Ruppe, E.; Ghozlane, A.; Tap, J.; Pons, N.; Alvarez, A.-S.; Maziers, N.; Cuesta, T.; Hernando-Amado, S.; Martinez, J. L.; Coque, T.; Baquero, F.; F. Lanza, V.; Maiz, L.; Goulenok, T.; de Lastours, V.; Amor, N.; Fantin, B.; Wieder, I.; Andremont, A.; van Schaik, W.; Rogers, M.; Zhang, X.; Willems, R. J. L.; De Brevern, A. G.; Batto, J.-M.; Blottiere, H.; Leonard, P.; Lejard, V.; Letur, A.; Levenez, F.; Weiszer, K.; Haimet, F.; Dore, J.; Kennedy, S. P.; Ehrlich, S. D.

10.1101/196014 — microbiology — Posted on 2017-09-29

46 Employing single-stranded DNA donors for the high-throughput production of conditional knockout alleles in mice

Lanza, D. G.; Gaspero, A.; Lorenzo, I.; Liao, L.; Zheng, P.; Wang, Y.; Deng, Y.; Cheng, C.; Zhang, C.; Rasband, M. N.; Seavitt, J. R.; DeMayo, F. J.; Xu, J.; Dickinson, M. E.; Beaudet, A. L.; Heaney, J. D.

10.1101/195651 — genetics — Posted on 2017-09-29

47 Genetic pleiotropy between mood disorders, metabolic, and endocrine traits in a multigenerational pedigree

Kember, R. L.; Hou, L.; Ji, X.; Andersen, L. H.; Ghorai, A.; Estrella, L. N.; Almasy, L.; McMahon, F. J.; Brown, C. D.; Bucan, M.

10.1101/196055 — genetics — Posted on 2017-09-29

48 Estimating sampling completeness of interactions in quantitative bipartite ecological networks: incorporating variation in species specialisation

Macgregor, C. J.; Evans, D. M.; Pocock, M. J. O.

10.1101/195917 — ecology — Posted on 2017-09-29

49 Fast and Accurate Genomic Analyses using Genome Graphs

Rakocevic, G.; Semenyuk, V.; Spencer, J.; Browning, J.; Johnson, I.; Arsenijevic, V.; Nadj, J.; Ghose, K.; Suciu, M. C.; Ji, S.-G.; Demir, G.; Li, L.; Toptas, B. C.; Dolgoborodov, A.; Pollex, B.; Glotova, I.; Komar, P.; Li, Y.; Popovic, M.; Lee, W.-P.; Kallberg, M.; Jain, A.; Kural, D.

10.1101/194530 — bioinformatics — Posted on 2017-09-29

50 Discovery of global regulators of 3’ untranslated region processing in cancers with KAPAC

Gruber, A. J. J.; Schmidt, R.; Ghosh, S.; Martin, G.; Gruber, A. R.; van Nimwegen, E.; Zavolan, M.

10.1101/195958 — systems biology — Posted on 2017-09-29

51 indCAPS: A tool for designing screening primers for CRISPR/Cas9 mutagenesis events

Hodgens, C.; Nimchuk, Z.; Kieber, J.

10.1101/196121 — plant biology — Posted on 2017-09-29

52 Understanding Functional Roles of Native Pentose-Specific Transporters for Activating Dormant Pentose Metabolism in Yarrowia lipolytica

Ryu, S.; Trinh, C. T.

10.1101/195834 — physiology — Posted on 2017-09-29

53 Music training improves the ability to understand speech-in-noise in older adults

Zendel, B. R.; West, G. L.; Belleville, S.; Peretz, I.

10.1101/196030 — neuroscience — Posted on 2017-09-29

54 Induction and Relief of Curiosity Elicit Parietal and Frontal Activity

van Lieshout, L. L. F.; Vandenbroucke, A. R. E.; Müller, N. C. J.; Cools, R.; de Lange, F. P.

10.1101/195461 — neuroscience — Posted on 2017-09-29

55 Mapping nonapoptotic caspase activity with a transgenic reporter in mice

Nicholls, P.; Pack, T.; Urs, N.; Kumar, S.; Turu, G.; Calabrese, E.; Roberts, W.; Fan, P.; Ostapchenko, V.; Guzman, M.; Beraldo, F.; Prado, V.; Prado, M.; Spasojevic, I.; Snyder, J.; Dzirasa, K.; Johnson, G. A.; Caron, M.

10.1101/196105 — neuroscience — Posted on 2017-09-29

56 Experimental warming reduces the diversity and functional potential of the Sphagnum microbiome

Carrell, A. A.; Kolton, M.; Warren, M. J.; Pelletier, D. A.; Glass, J. B.; Kostka, J. E.; Hanson, P. J.; Weston, D. J.

10.1101/194761 — ecology — Posted on 2017-09-29

57 Karrikin-sensing protein KAI2 is a new player in regulating root growth patterns

Swarbreck, S. M.; Guerringue, Y.; Matthus, E.; Jamieson, F. J. C.; Davies, J. M.

10.1101/195891 — plant biology — Posted on 2017-09-29

58 State-Based Delay Representation and Its Transfer from a Game of Pong to Reaching and Tracking

Avraham, G.; Leib, R.; Pressman, A.; Simo, L. S.; Karniel, A.; Shmuelof, L.; Mussa-Ivaldi, F. A.; Nisky, I.

10.1101/195982 — neuroscience — Posted on 2017-09-29

59 Simultaneous representation of a spectrum of dynamically changing value estimates during decision making

Meder, D.; Kolling, N.; Verhagen, L.; Wittmann, M.; Scholl, J.; Madsen, K. H.; Hulme, O.; Behrens, T.; Rushworth, M.

10.1101/195842 — neuroscience — Posted on 2017-09-29

60 Parallel progress in perceived age and life expectancy

Steiner, U.; Aagaard Larsen, L.; Christensen, K.

10.1101/195990 — epidemiology — Posted on 2017-09-29

61 Nasal and aerosol shedding of infectious influenza virus - a community based study

Yan, J.; Grantham, M.; Pantelic, J.; Bueno de Mesquita, P. J.; Albert, B.; Liu, F.; Ehrman, S.; Milton, D. K.; EMIT Consortium,

10.1101/194985 — epidemiology — Posted on 2017-09-29

62 Spatial correlation as an early warning signal of regime shifts in a multiplex disease-behaviour network

Jentsch, P. C.; Bauch, C. T.

10.1101/195388 — epidemiology — Posted on 2017-09-29

63 Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak

Dellicour, S.; Baele, G.; Dudas, G.; Faria, N. R.; Pybus, O. G.; Suchard, M. A.; Rambaut, A.; Lemey, P.

10.1101/163691 — epidemiology — Posted on 2017-09-29

64 Metabolic characterization of menopause: cross-sectional and longitudinal evidence

Wang, Q.; Santos Ferreira, D. L.; Nelson, S. M.; Sattar, N.; Ala-Korpela, M.; Lawlor, D. A.

10.1101/195909 — epidemiology — Posted on 2017-09-29

65 Complexity of the Relationship between Life Expectancy and Overlap of Lifespans

Barthold Jones, J. A.; Lenart, A.; Baudisch, A.

10.1101/195867 — ecology — Posted on 2017-09-29

66 SAMSA2: A standalone metatranscriptome analysis pipeline

Westreich, S. T.; Treiber, M. L.; Mills, D. A.; Korf, I.; Lemay, D. G.

10.1101/195826 — bioinformatics — Posted on 2017-09-29

67 Structural network maturation of the preterm human brain

Zhao, T.; Mishra, V.; Jeon, T.; Ouyang, M.; Peng, Q.; Chalak, L.; Wisnowski, J. L.; Heyne, R.; Rollins, N.; Shu, N.; Huang, H.

10.1101/195800 — neuroscience — Posted on 2017-09-29

68 BldC delays entry into development to produce a sustained period of vegetative growth in Streptomyces venezuelae

Bush, M. J.; Al-Bassam, M. J.; Chandra, G.; Findlay, K.; Buttner, M. J.

10.1101/194126 — microbiology — Posted on 2017-09-29

69 PHENOS: a high-throughput and flexible tool for microorganism growth phenotyping on solid media

Barton, D. B. H.; Georghiou, D.; Dave, N.; Alghamdi, M.; Walsh, T.; Louis, E. J.; Foster, S. S.

10.1101/195784 — microbiology — Posted on 2017-09-29

70 Genome-wide association study of social relationship satisfaction: significant loci and correlations with psychiatric conditions

Warrier, V.; Bourgeron, T.; Baron-Cohen, S.

10.1101/196071 — genomics — Posted on 2017-09-29

71 Genome-wide association analysis identifies 26 novel loci for asthma, hay fever and eczema

Ek, W. E.; Rask-Andersen, M.; Karlsson, T.; Johansson, A.

10.1101/195933 — genetics — Posted on 2017-09-29

72 Desert Tortoises in the Genomic Age: Population Genetics and the Landscape

Shaffer, H. B.; McCartney-Melstad, E.; Ralph, P. L.; Bradburd, G.; Lundgren, E.; Vu, J.; Hagerty, B.; Sandmeier, F.; Weitzman, C.; Tracy, C. R.

10.1101/195743 — evolutionary biology — Posted on 2017-09-29

73 Activation of the Androgen Receptor gene by BORIS/CTCFL in prostate cancer cells

Hari-Gupta, Y.; Kita, G.-X.; Farrar, D.; Klenova, E.

10.1101/195875 — cancer biology — Posted on 2017-09-29

74 Reconstructing the Molecular Life History of Gliomas

Barthel, F.; Wesseling, P.; Verhaak, R.

10.1101/192369 — cancer biology — Posted on 2017-09-29

75 Evaluation of MRI sequences for quantitative T1 brain mapping

Tsialios, P.; Thrippleton, M.; Pernet, C.

10.1101/195859 — biophysics — Posted on 2017-09-29

76 Genome-Wide Characterization Of Differential Transcript Usage In Arabidopsis thaliana

Vaneechoutte, D.; Estrada, A. R.; Lin, Y.-C.; Loraine, A.; Vandepoele, K.

10.1101/136770 — plant biology — Posted on 2017-09-29

77 Embryonic and postnatal neurogenesis produce functionally distinct subclasses of dopaminergic neuron

Galliano, E.; Franzoni, E.; Breton, M.; Chand, A. N.; Byrne, D. J.; Murthy, V. N.; Grubb, M. S.

10.1101/196006 — neuroscience — Posted on 2017-09-29

78 EVOLUTIONARY ANALYSIS OF CANDIDATE NON-CODING ELEMENTS REGULATING NEURODEVELOPMENTAL GENES IN VERTEBRATES

Novo, F. J.

10.1101/150482 — evolutionary biology — Posted on 2017-09-29

79 Estimating Time Of HIV-1 Infection From Next-Generation Sequence Diversity

Puller, V.; Neher, R.; Albert, J.

10.1101/129387 — epidemiology — Posted on 2017-09-29

80 CRISPR-Based DNA Imaging in Living Cells Reveals Cell Cycle-Dependent Chromosome Dynamics

Ma, H.; Tu, L.-C.; Naseri, A.; Chung, Y.-C.; Grunwald, D.; Zhang, S.; Pederson, T.

10.1101/195966 — cell biology — Posted on 2017-09-29

81 Sinusoidal Voltage Protocols For Rapid Characterization Of Ion Channel Kinetics

Beattie, K. A.; Hill, A. P.; Bardenet, R.; Cui, Y.; Vandenberg, J. I.; Gavaghan, D. J.; de Boer, T. P.; Mirams, G. R.

10.1101/100677 — biophysics — Posted on 2017-09-29

82 Green microalga Trebouxia sp. produces strigolactone-related compounds

Smykalova, I.; Ludvikova, M.; Ondrackova, E.; Klejdus, B.; Bonhomme, S.; Kronusova, O.; Soukup, A.; Rozmos, M.; Guzow-Krzeminska, B.; Matusova, R.

10.1101/195883 — plant biology — Posted on 2017-09-29

83 Visual evidence accumulation behavior in unrestrained mice

Odoemene, O.; Nguyen, H.; Churchland, A. K.

10.1101/195792 — neuroscience — Posted on 2017-09-29

84 A multi-locus association analysis method integrating phenotype and expression data reveals multiple novel associations to flowering time variation in wild-collected Arabidopsis thaliana

Zan, Y.; Carlborg, O.

10.1101/195446 — genetics — Posted on 2017-09-29

85 High-throughput creation and functional profiling of eukaryotic DNA sequence variant libraries using CRISPR/Cas9

Guo, X.; Chavez, A.; Tung, A.; Chan, Y.; Cecchi, R.; Lopez Garnier, S.; Kaas, C.; Kelsic, E.; Schubert, M.; DiCarlo, J.; Collins, J.; Church, G.

10.1101/195776 — bioengineering — Posted on 2017-09-29

86 MTH1 deficiency selectively increases non-cytotoxic oxidative DNA damage in lung cancer cells: more bad news than good?

Abbas, H. H. K.; Alhamoudi, K. M. H.; Evans, M. D.; Jones, G. D. D.; Foster, S. S.

10.1101/195750 — cancer biology — Posted on 2017-09-28

87 EWS-FLI-1 creates a cell surface microenvironment conducive to IGF signaling by inducing pappalysin-1.

Jayabal, P.; Houghton, P. J.; Shiio, Y.

10.1101/195693 — cancer biology — Posted on 2017-09-28

88 Accessibility of the Shine-Dalgarno sequence dictates N-terminal codon bias in E. coli

Bhattacharyya, S.; Jacobs, W. M.; Adkar, B.; Yan, J.; Zhang, W.; Shakhnovich, E.

10.1101/195727 — biophysics — Posted on 2017-09-28

89 Zwitterionic hydrogels modulate the foreign body response in a modulus-dependent manner

Jansen, L. E.; Amer, L. D.; Chen, E. Y.-T.; Nguyen, T. V.; Saleh, L.; Emrick, T. S.; Liu, W. F.; Bryant, S. J.; Peyton, S.

10.1101/195719 — bioengineering — Posted on 2017-09-28

90 In vivo structures of the Helicobacter pylori cag type IV secretion system

Chang, Y.-W.; Shaffer, C. L.; Rettberg, L. A.; Ghosal, D.; Jensen, G. J.

10.1101/195685 — microbiology — Posted on 2017-09-28

91 Ascertainment bias can create the illusion of genetic health disparities

Kim, M. S.; Patel, K. P.; Teng, A. K.; Berens, A. J.; Lachance, J.

10.1101/195768 — genomics — Posted on 2017-09-28

92 Unexpected CRISPR off-target mutation pattern in vivo are not typicallygermline-like

Wei, Z.; He, F.; Chuai, G.; Ma, H.; Su, Z.; Liu, Q.

10.1101/193565 — genetics — Posted on 2017-09-28

93 Identification of genome-wide significant shared genomic segments in large extended Utah families at high risk for completed suicide

Coon, H.; Darlington, T. M.; Callor, W. B.; Ferris, E.; Fraser, A.; Yu, Z.; William, N.; Das, S. C.; Crowell, S. E.; Puzia, M.; Klein, M.; Docherty, A.; Jerominski, L.; Cannon, D. S.; Smith, K. R.; Keeshin, B.; Bakian, A. V.; Christensen, E.; Camp, N. J.; Gray, D.

10.1101/195644 — genetics — Posted on 2017-09-28

94 Integrating phylogenetic and network approaches to study gene family evolution: the case of the AGAMOUS family of floral genes

Carvalho, D. S.; Schnable, J. C.; Almeida, A. M. R.

10.1101/195669 — evolutionary biology — Posted on 2017-09-28

95 The fractional coalescent

Mashayekhi, S.; Beerli, P.

10.1101/195677 — evolutionary biology — Posted on 2017-09-28

96 Ecosystem functional response across precipitation extremes in a sagebrush steppe

Tredennick, A. T.; Kleinhesselink, A.; Taylor, J. B.; Adler, P.

10.1101/195594 — ecology — Posted on 2017-09-28

97 Microtubule regulation of integrin-based adhesions is mediated by myosin-IIA

Nishimura, Y.; Mohd Rafiq, N.; Plotnikov, S. V.; Zhang, Z.; Thiagarajan, V.; Natarajan, M.; Jones, G. E.; Kanchanawong, P.; Bershadsky, A. D.

10.1101/195495 — cell biology — Posted on 2017-09-28

98 Cell size-dependent regulation of Wee1 localization by Cdr2 cortical nodes

Allard, C. A. H.; Opalko, H. E.; Liu, K.-W.; Medoh, U.; Moseley, J. B.

10.1101/195628 — cell biology — Posted on 2017-09-28

99 Dietary xenoestrogens significantly alter cellular metabolism induced by palbociclib/letrozole combination cancer therapy

Warth, B.; Granados, A.; Huan, T.; Fang, M.; Forsberg, E. M.; Benton, H. P.; Goetz, L.; Johnson, C.; Siuzdak, G.

10.1101/188102 — cancer biology — Posted on 2017-09-28

100 Odonata diversity of the eastern region of Bangladesh with four new addition to the Bangladeshi dragonfly fauna

Khan, M. K.

10.1101/195438 — zoology — Posted on 2017-09-28

101 Fundamentals of rapid injection molding for microfluidic cell-based assays

Lee, U. N.; Su, X.; Guckenberger, D. J.; Dostie, A. M.; Zhang, T.; Berthier, E.; Theberge, A. B.

10.1101/194605 — bioengineering — Posted on 2017-09-28

102 Dramatic evolution of body length due to post-embryonic changes in cell size in a newly discovered close relative of C. elegans

Woodruff, G. C.; Phillips, P. C.

10.1101/181107 — evolutionary biology — Posted on 2017-09-28

103 Dephosphorylation of the NPR2 guanylyl cyclase contributes to inhibition of bone growth by fibroblast growth factor

Shuhaibar, L. C.; Robinson, J. W.; Shuhaibar, N. P.; Egbert, J. R.; Vigone, G.; Baena, V.; Kaback, D.; Yee, S.-P.; Feil, R.; Fisher, M. C.; Dealy, C. N.; Potter, L. R.; Jaffe, L. A.

10.1101/193847 — developmental biology — Posted on 2017-09-28

104 Mini-ring approach for high-throughput drug screenings in 3D tumor models

Phan, N.; Tofig, B.; Janzen, D.; Huang, J.; Memarzadeh, S.; Damoiseaux, R.; Soragni, A.

10.1101/138412 — cancer biology — Posted on 2017-09-28

105 Thalamocortical and Intracortical Laminar Connectivity Determines Sleep Spindle Properties

Krishnan, G. P.; Rosen, B. Q.; Chen, J.-Y.; Muller, L.; Sejnowski, T. J.; Cash, S. S.; Halgren, E.; Bazhenov, M.

10.1101/195552 — neuroscience — Posted on 2017-09-28

106 Selective Maintenance of Value Information Helps Resolve the Exploration/Exploitation Dilemma

Hallquist, M.; Dombrovski, A.

10.1101/195453 — neuroscience — Posted on 2017-09-28

107 Coupling of autonomic and central events during sleep boosts declarative memory consolidation

Naji, M.; Krishnan, G.; McDevitt, E. A.; Bazhenov, M.; Mednick, S. C.

10.1101/195586 — neuroscience — Posted on 2017-09-28

108 Gradual progression from sensory to task-related processing in cerebral cortex

Brincat, S. L.; Siegel, M.; von Nicolai, C.; Miller, E. K.

10.1101/195602 — neuroscience — Posted on 2017-09-28

109 Infant Transmitted/Founder HIV-1 Viruses from Peripartum Transmission are Neutralization Resistant to Paired Maternal Plasma

Kumar, A.; Smith, C. E. P.; Giorgi, E. E.; Eudailey, J.; Martinez, D. R.; Yusim, K.; Douglas, A. O.; Stamper, L.; McGuire, E.; LaBranche, C. C.; Montefiori, D. C.; Amouou, G. G. F.; Gao, F.; Permar, S. R.

10.1101/183368 — molecular biology — Posted on 2017-09-28

110 Improved Score Statistics for Meta-analysis in Single-variant and Gene-level Association Studies

Yang, J.; Chen, S.; Abecasis, G.; IAMDGC,

10.1101/195545 — genetics — Posted on 2017-09-28

111 Force dependence of filopodia adhesion: involvement of myosin II and formins

Alieva, N. O.; Efremov, A. K.; Hu, S.; Oh, D.; Chen, Z.; Natarajan, M.; Ong, H. T.; Jegou, A.; Romet-Lemonne, G.; Groves, J. T.; Sheetz, M. P.; Yan, J.; Bershadsky, A. D.

10.1101/195420 — cell biology — Posted on 2017-09-28

112 Widespread dysregulation of the circadian clock in human cancer

Shilts, J.; Chen, G.; Hughey, J.

10.1101/130765 — cancer biology — Posted on 2017-09-28

113 Odonata diversity of the eastern region of Bangladesh with four new addition to the Bangladeshi dragonfly fauna

Khan, M. K.

10.1101/195438 — zoology — Posted on 2017-09-28

114 Abundance and diversity of the fecal resistome in slaughter pigs and broilers in nine European countries

Munk, P.; Knudsen, B. E.; Lukjacenko, O.; Duarte, A. S. R.; Luiken, R. E. C.; Van Gompel, L.; Smit, L. A. M.; Schmitt, H.; Garcia, A. D.; Hansen, R. B.; Petersen, T. N.; Bossers, A.; Ruppe, E.; Graveland, H.; van Essen, A.; Gonzalez-Zorn, B.; Moyano, G.; Sanders, P.; Chauvin, C.; David, J.; Battisti, A.; Caprioli, A.; Dewulf, J.; Blaha, T.; Wadepohl, K.; Brandt, M.; Wasyl, D.; Skarzynska, M.; Zajac, M.; Daskalov, H.; Saatkamp, H. W.; Stärk, K. D. C.; Lund, O.; Hald, T.; Pamp, S. J.; Vigre, H.; Heederik, D.; Wagenaar, J.; Mevius, D.; Aarestrup, F. M.

10.1101/194647 — microbiology — Posted on 2017-09-28

115 Universal Panel Testing of Pancreatic Cancer Cases for Cancer Predisposition

Young, E. L.; Thompson, B. A.; Neklason, D. W.; Snow, A. K.; Firpo, M. A.; Werner, T.; Bell, R.; Sutherland, N. R.; Smith, K. R.; Berger, J.; Fraser, A.; Gammon, A.; Koptiuch, C.; Kohlmann, W. K.; Neumayer, L.; Goldgar, D. E.; Mulvihill, S. J.; Albright, L. A.; Tavtigian, S. V.

10.1101/195537 — genetics — Posted on 2017-09-28

116 Evolutionary rescue through partly heritable phenotypic variability

Carja, O.; Plotkin, J. B.

10.1101/092718 — evolutionary biology — Posted on 2017-09-28

117 On the dynamics of reproductive values and phenotypic traits in class-structured populations

Lion, S.

10.1101/155879 — evolutionary biology — Posted on 2017-09-28

118 Characterization of the Novel Mitochondrial Genome Replication Factor MiRF172 in Trypanosoma brucei

Amodeo, S.; Jakob, M.; Ochsenreiter, T.

10.1101/194811 — cell biology — Posted on 2017-09-28

119 MicroRNA miR-128 represses LINE-1 (L1) retrotransposition by downregulating the nuclear import factor TNPO1

Idica, A.; Sevrioukov, E.; Zisoulis, D.; Hamdorf, M.; Daugaard, I.; Kadandale, P.; Pedersen, I.

10.1101/195206 — cell biology — Posted on 2017-09-28

120 OpenEHR modeling for genomics in clinical practice

Mascia, C.; Uva, P.; Leo, S.; Zanetti, G.

10.1101/194720 — bioinformatics — Posted on 2017-09-28

121 Impact of spatial organization on a novel auxotrophic interaction among soil microbes

Jiang, X.; Zerfass, C.; Eichmann, R.; Asally, M.; Schaefer, P.; Soyer, O.

10.1101/195339 — systems biology — Posted on 2017-09-28

Lai, J.; Bartlett, E. L.

10.1101/193268 — neuroscience — Posted on 2017-09-28

123 Neonatal Zika virus infection causes epileptic seizures, viral persistence and long-term behavioral impairment

Souza, I. N. O.; Frost, P. S.; Franca, J. V.; Barbosa, J.; Neris, R. L. S.; Freitas, L.; Pinheiro, D. J. L. L.; Neves, G.; Chimelli, L.; De Felice, F. G.; Cavalheiro, E. A.; Ferreira, S. T.; Da Poian, A. T.; Assuncao-Miranda, I.; Figueiredo, C.; Clarke, J. R.

10.1101/195172 — neuroscience — Posted on 2017-09-28

124 Subtypes of functional brain connectivity as early markers of neurodegeneration in Alzheimer’s disease

Orban, P.; Tam, A.; Urchs, S.; Savard, M.; Madjar, C.; Badhwar, A.; Dansereau, C.; Vogel, J.; Shmuel, A.; Dagher, A.; Villeneuve, S.; Poirier, J.; Rosa-Neto, P.; Breitner, J.; Bellec, P.; Alzheimer's Disease Neuroimaging Initiative, ; PreventAD,

10.1101/195164 — neuroscience — Posted on 2017-09-28

125 Representational confusion: the plausible consequence of demeaning your data

Ramirez, F. M.

10.1101/195271 — neuroscience — Posted on 2017-09-28

126 Development of a high-throughput bead based assay system to measure HIV-1 specific immune signatures in clinical samples

Liechti, T.; Kadelka, C.; Ebner, H.; Friedrich, N.; Kouyos, R. D.; Gunthard, H. F.; Trkola, A.

10.1101/195362 — immunology — Posted on 2017-09-28

127 Acute condensin depletion causes genome decompaction without altering the level of global gene expression in Saccharomyces cerevisiae

Paul, M. R.; Markowitz, T. E.; Hochwagen, A.; Ercan, S.

10.1101/195487 — genomics — Posted on 2017-09-28

128 LFASS: Label-Free Automated Survival Scoring for High-Throughput Nematode Assays

Benedetto, A. E.; Bambade, T.; Au, C. S. S.; Tullet, J. M.; Dang, H.; Cetnar, K.; Cabreiro, F. G.; Gems, D.

10.1101/195347 — genetics — Posted on 2017-09-28

129 Phylogenetic Comparative Methods on Phylogenetic Networks with Reticulations

Bastide, P.; Solis-Lemus, C.; Kriebel, R.; Sparks, K. W.; Ane, C.

10.1101/194050 — evolutionary biology — Posted on 2017-09-28

130 Global Land Use Implications of Dietary Trends: A Tragedy of the Commons

Rizvi, S.; Pagnutti, C.; Bauch, C. T.; Anand, M.

10.1101/195396 — ecology — Posted on 2017-09-28

131 Interconnections accelerate collapse in a socio-ecological metapopulation

Dockstader, Z.; Bauch, C. T.; Anand, M.

10.1101/195412 — ecology — Posted on 2017-09-28

132 The HoxD Cluster is a Dynamic and Resilient TAD Boundary Controling the Segregation of Antagonistic Regulatory Landscapes

Rodriguez-Carballo, E.; Lopez-Delisle, L.; Zhan, Y.; Fabre, P.; Beccari, L.; El-Idrissi, I.; Nguyen Huynh, T. H.; Ozadam, H.; Dekker, J.; Duboule, D.

10.1101/193706 — developmental biology — Posted on 2017-09-28

133 Interferon-inducible miR-128 modulates HIV-1 replication by targeting TNPO3 mRNA

Pedersen, I.; Bochnakiem, A.; Zisoulis, D.; Idica, A.; Zhen, A.; KewalRamani, V.; Daugaard, I.; Hamdorf, M.; Kitchen, S.; Lee, K.

10.1101/195511 — cell biology — Posted on 2017-09-28

134 Distinct prophase arrest mechanisms in human male meiosis

Jan, S. Z.; Jongejan, A.; Korver, C. M.; van Daalen, S. K. M.; van Pelt, A. M. M.; Repping, S.; Hamer, G.

10.1101/195321 — cell biology — Posted on 2017-09-28

135 Development of an Intrinsic Skin Sensor for Blood Glucose Level with CRISPR-mediated Genome Editing in Epidermal Stem Cells

Yue, J.; Li, Y.; Gou, X.; Wu, X.

10.1101/195529 — cell biology — Posted on 2017-09-28

136 Mutational signatures reveal the role of RAD52 in p53-independent p21 driven genomic instability

Galanos, P.; Pappas, G.; Polyzos, A.; Kotsinas, A.; Svolaki, I.; Giakoumakis, N.; Glytsou, C.; Pateras, I.; Swain, U.; Souliotis, V.; Georgakilas, A.; Geacintov, N.; Scorrano, L.; Lukas, C.; Lukas, J.; Livneh, Z.; Lygerou, Z.; Sorensen, C. S.; Bartek, J.; Gorgoulis, V.

10.1101/195263 — cancer biology — Posted on 2017-09-28

137 A screen for combination therapies in BRAF/NRAS wild type melanoma identifies nilotinib plus MEK inhibitor as a synergistic combination

Ranzani, M.; Kemper, K.; Michaut, M.; Krijgsman, O.; Aben, N.; Iyer, V.; Wong, K.; Roumeliotis, T. I.; Del Castillo Velasco-Herrera, M.; Nsengimana, J.; Turner, G.; Thompson, N.; Shahrabi, A.; Sjoberg, M.; Rashid, M.; Speak, A. O.; Grinkevich, V.; Behan, F.; Tamborero, D.; Iorio, F.; van Dongen, S.; Bignell, G. R.; Alsinet, C.; Chen, S.; Supper, E.; Dutton-Regester, K.; Pritchard, A.; Wong, C.; Enright, A.; Newton-Bishop, J.; McDermott, U.; Hayward, N. K.; Choudhary, J. S.; Yusa, K.; Wessels, L.; Garnett, M. J.; Peeper, D.; Adams, D. J.

10.1101/195354 — cancer biology — Posted on 2017-09-28

138 ATRX, DAXX or MEN1 mutant pancreatic neuroendocrine tumors are a distinct alpha-cell signature subgroup

Chan, C.; Laddha, S.; Lewis, P.; Koletsky, M.; Robzyk, K.; Da Silva, E.; Torres, P.; Untch, B.; Bose, P.; Chan, T.; Klimstra, D.; Allis, C. D.; Tang, L.

10.1101/195214 — cancer biology — Posted on 2017-09-28

139 Massive expression of germ cell specific genes is a hallmark of cancer and a potential target for novel treatment development

Bruggeman, J. W.; Koster, J. J. B.; Repping, S.; Hamer, G.

10.1101/195305 — cancer biology — Posted on 2017-09-28

140 Insights into cerebral haemodynamics and oxygenation utilising in vivo mural cell imaging and mathematical modelling

Sweeney, P.; Walker-Samuel, S.; Shipley, R. J.

10.1101/195503 — biophysics — Posted on 2017-09-28

141 Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny

Jiang, Y.; Chen, H.; Zhou, Z.; Zhang, N. R.

10.1101/195230 — bioinformatics — Posted on 2017-09-28

142 Fitting mathematical models of biochemical pathways to steady state perturbation response data without simulating perturbation experiments

Santra, T.

10.1101/183194 — systems biology — Posted on 2017-09-28

143 Diminished dynamic cerebral autoregulatory capacity with forced oscillations in mean arterial pressure with elevated cardiorespiratory fitness

Labrecque, L.; Rahimaly, K.; Imhoff, S.; Paquette, M.; Le Blanc, O.; Malenfant, S.; Lucas, S. J.; Bailey, D. M.; Smirl, J. D.; Brassard, P.

10.1101/190405 — physiology — Posted on 2017-09-28

144 Posterior parietal cortex represents sensory stimulus history and is necessary for its effects on behavior

Akrami, A.; Kopec, C. D.; Diamond, M. E.; Brody, C. D.

10.1101/182246 — neuroscience — Posted on 2017-09-28

145 Hebbian Learning in a Random Network Captures Selectivity Properties of Prefrontal Cortex

Lindsay, G. W.; Rigotti, M.; Warden, M. R.; Miller, E. K.; Fusi, S.

10.1101/133025 — neuroscience — Posted on 2017-09-28

146 ABLE: an Activity-Based Level Set Segmentation Algorithm for Two-Photon Calcium Imaging Data

Reynolds, S.; Abrahamsson, T.; Schuck, R.; Sjöström, P. J.; Schultz, S. R.; Dragotti, P. L.

10.1101/190348 — neuroscience — Posted on 2017-09-28

147 A comprehensive characterization of cis-acting splicing-associated variants in human cancer

Shiraishi, Y.; Kataoka, K.; Chiba, K.; Okada, A.; Kogure, Y.; Tanaka, H.; Ogawa, S.; Miyano, S.

10.1101/162560 — genomics — Posted on 2017-09-28

148 Re-evaluating inheritance in genome evolution: widespread transfer of LINEs between species

Ivancevic, A.; Kortschak, D.; Bertozzi, T.; Adelson, D.

10.1101/106914 — evolutionary biology — Posted on 2017-09-28

149 Co-evolution of dispersal with social behaviour favours social polymorphism

Mullon, C.; Keller, L.; Lehmann, L.

10.1101/127316 — evolutionary biology — Posted on 2017-09-28

150 Parallel diversifications of Cremastosperma and Mosannona (Annonaceae), tropical rainforest trees tracking Neogene upheaval of the South American continent

Pirie, M. D.; Maas, P. J. M.; Wilschut, R.; Melchers-Sharrott, H.; Chatrou, L.

10.1101/141127 — evolutionary biology — Posted on 2017-09-28

151 The GENIUS Approach to Robust Mendelian Randomization Inference

Tchetgen Tchetgen, E.; Sun, B.; Walter, S.

10.1101/193953 — epidemiology — Posted on 2017-09-28

152 Extinction models of robustness for weighted ecological networks

Bane, M. S.; Pocock, M. J. O.; James, R.

10.1101/186577 — ecology — Posted on 2017-09-28

153 ChromoTrace: Reconstruction of 3D Chromosome Configurations by Super-Resolution Microscopy

Barton, C.; Morganella, S.; Oedegaard, O.; Alexander, S.; Ries, J.; Fitzgerald, T.; Ellenberg, J.; Birney, E.

10.1101/115436 — bioinformatics — Posted on 2017-09-28

154 Why Does the Neocortex Have Columns, A Theory of Learning the Structure of the World

Hawkins, J.; Ahmad, S.; Cui, Y.

10.1101/162263 — neuroscience — Posted on 2017-09-28

155 Quantifying ethical tradeoffs for vaccine efficacy trials during severe epidemics

Bellan, S. E.; Pulliam, J. R. C.; van der Graaf, R.; Fox, S. J.; Dushoff, J.; Meyers, L. A.

10.1101/193649 — epidemiology — Posted on 2017-09-28

156 Which are major players, canonical or non-canonical strigolactones?

Yoneyama, K.; Xie, X.; Yoneyama, K.; Kisugi, T.; Nomura, T.; Nakatani, Y.; Akiyama, K.; McErlean, C. S. P.

10.1101/195255 — plant biology — Posted on 2017-09-28

157 Interactions between immunotoxicants and parasite stress: implications for host health

Booton, R. D.; Yamaguchi, R.; Marshall, J. A. R.; Childs, D. Z.; Iwasa, Y.

10.1101/194142 — epidemiology — Posted on 2017-09-28

158 A cross-cultural study of sex-typicality and averageness: Correlation between frontal and lateral measures of human faces

Danel, D. P.; Varella Valentova, J.; Sanchez, O. R.; Leongomez, J. D.; Varella, M. A. C.; Kleisner, K.

10.1101/194662 — animal behavior and cognition — Posted on 2017-09-28

159 Method for identification of condition-associated public antigen receptor sequences

Pogorelyy, M. V.; Minervina, A. A.; Chudakov, D. M.; Mamedov, I. Z.; Lebedev, Y. B.; Mora, T.; Walczak, A. M.

10.1101/195057 — immunology — Posted on 2017-09-28

160 Behavioral diversity assisting obstacle navigation during group transportation in ant

Utsunomiya, S.; Takamatsu, A.

10.1101/194100 — animal behavior and cognition — Posted on 2017-09-28

161 The GENIUS Approach to Robust Mendelian Randomization Inference

Tchetgen Tchetgen, E.; Sun, B.; Walter, S.

10.1101/193953 — epidemiology — Posted on 2017-09-28

162 Classifying cancer genome aberrations by their mutually exclusive effects on transcription

Dayton, J. B.; Piccolo, S. R.

10.1101/122549 — genomics — Posted on 2017-09-27

163 Enriched pathogen diversity under host-type heterogeneity and immune-mediated competition

Martinez, P. P.; Woods, R. J.; Pascual, M.

10.1101/195065 — ecology — Posted on 2017-09-27

164 Individual nephron proteomes connect morphology and function in proteinuric kidney disease

Hoehne, M.; Frese, C.; Grahammer, F.; Dafinger, C.; Ciarimboli, G.; Butt, L.; Binz, J.; Hackl, M.; Rahmatollahi, M.; Kann, M.; Schneider, S.; Altintas, M.; Schermer, B.; Reinheckel, T.; Goebel, H.; Reiser, J.; Huber, T.; Kramann, R.; Seeger-Nukpezah, T.; Liebau, M.; Beck, B.; Benzing, T.; Beyer, A.; Rinschen, M.

10.1101/194795 — physiology — Posted on 2017-09-27

165 Inhaled nicotine equivalent to cigarette smoking disrupts systemic and uterine hemodynamics and induces cardiac arrhythmia in pregnant rats

Shao, X. M.; Lopez-Valdes, H. E.; Liang, J.; Feldman, J. L.

10.1101/195099 — pharmacology and toxicology — Posted on 2017-09-27

166 Chronic intermittent nicotine delivery with lung alveolar region-targeted aerosol technology produces circadian blood pharmacokinetics in rats resembling human smokers

Shao, X. M.; Liu, S.; Lee, E. S.; Fung, D.; Pei, H.; Liang, J.; Mudgway, R.; Zhang, J.; Feldman, J. L.; Zhu, Y.; Louie, S.; Xie, X. S.

10.1101/195123 — pharmacology and toxicology — Posted on 2017-09-27

167 Quaddles: A multidimensional 3D object set with parametrically-controlled and customizable features

Watson, M. R.; Voloh, B.; Naghizadeh, M.; Womelsdorf, T.

10.1101/194381 — neuroscience — Posted on 2017-09-27

168 Sub-threshold resonance organizes activity and optimizes learning in neural networks.

Roach, J. P.; Pidde, A.; Katz, E.; Wu, J.; Ognjanovski, N.; Aton, S. J.; Zochowski, M. R.

10.1101/195040 — neuroscience — Posted on 2017-09-27

169 Entering the era of conservation genomics: Cost-effective assembly of the African wild dog genome using linked long reads

Armstrong, E. E.; Taylor, R. W.; Prost, S.; Blinston, P.; van der Meer, E.; Madzikanda, H.; Mufute, O.; Mandisodza, R.; Steulpnagel, J.; Sillero-Zubiri, C.; Petrov, D.

10.1101/195180 — genomics — Posted on 2017-09-27

170 Intragenus variation in a Chemokine Receptor Gene (CCR5) in Homo

Hoover, K. C.

10.1101/195081 — genetics — Posted on 2017-09-27

171 Age at first birth in women is genetically associated with increased risk of schizophrenia

Ni, G.; Gratten, J.; Schizophrenia Working Group of the Psychiatric Gen, ; Wray, N. R.; Lee, S. H.

10.1101/194076 — genetics — Posted on 2017-09-27

172 The architecture and design of ecological null models

Ladau, J.

10.1101/195131 — ecology — Posted on 2017-09-27

173 Global analysis of specificity determinants in eukaryotic protein kinases

Bradley, D.; Vieitez, C.; Rajeeve, V.; Cutillas, P. R.; Beltrao, P.

10.1101/195115 — cell biology — Posted on 2017-09-27

174 PharmacoDB: an integrative database for mining in vitro anticancer drug screening studies

Smirnov, P.; Kofia, V.; Maru, A.; Freeman, M.; Ho, C.; El-Hachem, N.; Adam, G.-A.; Ba-alawi, W.; Safikhani, Z.; Haibe-Kains, B.

10.1101/195149 — bioinformatics — Posted on 2017-09-27

175 Conserved Neural Circuit Structure Across Drosophila Larval Development Revealed By Comparative Connectomics

Gerhard, S.; Andrade, I.; Fetter, R. D.; Cardona, A.; Schneider-Mizell, C. M.

10.1101/143727 — neuroscience — Posted on 2017-09-27

176 A neural decoder for learned vocal behavior

Arneodo, E. M.; Chen, S.; Gilja, V.; Gentner, T. Q.

10.1101/193987 — neuroscience — Posted on 2017-09-27

177 Systemic Markers of Adaptive and Innate Immunity Are Associated with COPD Severity and Spirometric Disease Progression

Halper-Stromberg, E.; Yun, J. H.; Parker, M. M.; Tal-Singer, R. M.; Gaggar, A.; Silverman, E. K.; Leach, S.; Bowler, R. P.; Castaldi, P. J.

10.1101/193920 — genomics — Posted on 2017-09-27

178 Fast Inference of Individual Admixture Coefficients Using Geographic Data

Caye, K.; Jay, F.; Michel, O.; Francois, O.

10.1101/080291 — evolutionary biology — Posted on 2017-09-27

179 The CLAVATA receptor FASCIATED EAR2 responds to different CLE peptides by signaling through different downstream effectors.

Je, B. I.; Xu, F.; Wu, Q.; Liu, L.; Meeley, R.; Jackson, D.

10.1101/194951 — plant biology — Posted on 2017-09-27

180 Assessing the quality of supplementary sensory feedback using a crossmodal congruency task

Blustein, D.; Wilson, A.; Sensinger, J.

10.1101/194977 — neuroscience — Posted on 2017-09-27

181 Neural coding of fine-grained object knowledge in perirhinal cortex

Price, A. R.; Bonner, M. F.; Peelle, J. E.; Grossman, M.

10.1101/194829 — neuroscience — Posted on 2017-09-27

182 Successful optimization of CRISPR/Cas9-mediated defined point mutation knock-in using allele-specific PCR assays in zebrafish

Prykhozhij, S. V.; Fuller, C.; Steele, S. L.; Veinotte, C. J.; Razaghi, B.; McMaster, C.; Shlien, A.; Malkin, D.; Berman, J. N.

10.1101/194936 — molecular biology — Posted on 2017-09-27

183 Traditional Norwegian Kveik Yeasts: Underexplored Domesticated Saccharomyces cerevisiae Yeasts

Preiss, R.; Tyrawa, C.; van der Merwe, G.

10.1101/194969 — microbiology — Posted on 2017-09-27

184 Kinetics of HIV-Specific CTL Responses Plays a Minimal Role in Determining HIV Escape Dynamics

Yang, Y.; Ganusov, V. V.

10.1101/194886 — immunology — Posted on 2017-09-27

185 Improved prediction of Bovine Leucocyte Antigens (BoLA) presented ligands by use of MS eluted ligands and in-vitro binding data; impact for the identification T cell epitopes

Nielsen, M.; Connelley, T.; Ternette, N.

10.1101/195016 — immunology — Posted on 2017-09-27

186 Mixed model association for biobank-scale data sets

Loh, P.-R.; Kichaev, G.; Gazal, S.; Schoech, A. P.; Price, A. L.

10.1101/194944 — genetics — Posted on 2017-09-27

187 Estimation of genetic correlation using linkage disequilibrium score regression and genomic restricted maximum likelihood

Ni, G.; Moser, G.; Schizophrenia Working Group of the Psychiatric Gen, ; Wray, N. R.; Lee, S. H.

10.1101/194019 — genetics — Posted on 2017-09-27

188 The distribution of crossovers, and the measure of total recombination

Veller, C.; Nowak, M.

10.1101/194837 — genetics — Posted on 2017-09-27

189 Inferring processes of community assembly from macroscopic patterns: the case for inclusive and mechanistic approaches

Pontarp, M.; Brannstrom, A.; Petchey, O.

10.1101/195008 — evolutionary biology — Posted on 2017-09-27

190 Enriched pathogen diversity under host-type heterogeneity and immune-mediated competition

Martinez, P. P.; Woods, R. J.; Pascual, M.

10.1101/195065 — ecology — Posted on 2017-09-27

191 Approximate Bayesian computation reveals the importance of repeated measurements for parameterising cell-based models of growing tissues

Kursawe, J.; Baker, R. E.; Fletcher, A. G.

10.1101/194712 — developmental biology — Posted on 2017-09-27

192 Spatially uniform establishment of chromatin accessibility in the early Drosophila embryo

Haines, J. E.; Eisen, M. B.

10.1101/195073 — developmental biology — Posted on 2017-09-27

193 Human replication licensing factor Cdt1 directly links mitotic kinetochores to spindle microtubules

Agarwal, S.; Smith, K.; Zhou, Y.; Suzuki, A.; McKenney, R.; Varma, D.

10.1101/194993 — cell biology — Posted on 2017-09-27

194 Stress granule-inducing eukaryotic translation initiation factor 4A inhibitors block influenza A virus replication

Slaine, P. D.; Kleer, M.; Smith, N.; Khaperskyy, D. A.; McCormick, C.

10.1101/194589 — microbiology — Posted on 2017-09-27

195 FENNEC - Functional Exploration of Natural Networks and Ecological Communities

Ankenbrand, M. J.; Hohlfeld, S. C. Y.; Foerster, F.; Keller, A.

10.1101/194308 — ecology — Posted on 2017-09-27

196 Transcriptional control by Sall4 in blastocysts facilitates lineage commitment of inner cell mass cells

Miller, A.; Gharbi, S.; Etienne-Dumeau, C.; Nishinakamura, R.; Hendrich, B.

10.1101/194852 — developmental biology — Posted on 2017-09-27

197 A system-wide approach to monitor responses to synergistic BRAF and EGFR inhibition in colorectal cancer cells

Ressa, A.; Bosdriesz, E.; de Ligt, J.; Mainardi, S.; Maddalo, G.; Prahallad, A.; Jager, M.; de la Fonteijne, L.; Fitzpatrick, M.; Groten, S.; Altelaar, A. F. M.; Bernards, R. R.; Cuppen, E.; Wessels, L.; Heck, A. J. R.

10.1101/194845 — cancer biology — Posted on 2017-09-27

198 Non-Elastic Remodeling of the 3D Extracellular Matrix by Cell-Generated Forces

Malandrino, A.; Mak, M.; Trepat, X.; Kamm, R. D.

10.1101/193458 — bioengineering — Posted on 2017-09-27

199 The role of traction in membrane curvature generation

Alimohamadi, H.; Vasan, R.; Hassinger, J. E.; Stachowiak, J.; Rangamani, P.

10.1101/157313 — biophysics — Posted on 2017-09-27

200 Adaptation to a Space-variant Visuomotor Delay can Cause Neglect-like Effects on Drawing Symmetry

Avraham, C.; Avraham, G.; Mussa-Ivaldi, F.; Nisky, I.

10.1101/193334 — neuroscience — Posted on 2017-09-27

201 Progesterone receptor maintains estrogen receptor gene expression by regulating DNA methylation in hormone-free breast cancer cells

Verde, G.; De Llobet, L. I.; Wright, R. H. G.; Quilez, J.; Peiro, S.; Le Dily, F.; Beato, M.

10.1101/192567 — molecular biology — Posted on 2017-09-27

202 Characterization and Validation of a Novel Group of Type V, Class 2 Nucleases for in vivo Genome Editing

Begemann, M. B.; Gray, B. N.; January, E.; Singer, A.; Kesler, D. C.; He, Y.; Liu, H.; Guo, H.; Jordan, A.; Brutnell, T. P.; Mockler, T. C.; Oufattole, M.

10.1101/192799 — molecular biology — Posted on 2017-09-27

203 Gene transfers, like fossils, can date the Tree of Life

Davin, A. A.; Tannier, E.; Williams, T. A.; Boussau, B.; Daubin, V.; Szollosi, G. J.

10.1101/193813 — evolutionary biology — Posted on 2017-09-27

204 Radical changes persist longer in the absence of sex

Sharbrough, J.; Luse, M.; Boore, J. L.; Logsdon, J. M.; Neiman, M.

10.1101/049924 — evolutionary biology — Posted on 2017-09-27

205 Rats and axolotls share a common molecular signature after spinal cord injury enriched in collagen-1

Didangelos, A.; Bartus, K.; Tica, J.; Puglia, M.; Roschitzki, B.; Bradbury, E.

10.1101/184713 — pathology — Posted on 2017-09-27

206 Time-conditional properties of branches in coalescent gene trees

Platt, A.

10.1101/189209 — genetics — Posted on 2017-09-27

207 Proto-ribosome: a theoretical approach based on RNA relics

Demongeot, J.

10.1101/182055 — evolutionary biology — Posted on 2017-09-27

208 Biphasic, Switch-Like Isothermal DNA Amplification

Ozay, B.; Robertus, C. M.; Negri, J. L.; McCalla, S.

10.1101/169805 — bioengineering — Posted on 2017-09-27

209 A Rational Drug Combination Design to Inhibit Epithelial-Mesenchymal Transition in a Three-Dimensional Microenvironment

Barneh, F.; Mirzaie, M.; Nickchi, P.; Tan, T. Z.; Thiery, J. P.; Piran, M.; Salimi, M.; Goshadrou, F.; Aref, A. R.; Jafari, M.

10.1101/148767 — systems biology — Posted on 2017-09-27

210 History is written by the victors: the effect of the push of the past on the fossil record

Budd, G. E.; Mann, R. P.

10.1101/194753 — paleontology — Posted on 2017-09-27

211 MatClassRSA: A Matlab toolbox for M/EEG classification and visualization of proximity matrices

Wang, B. C.; Norcia, A. M.; Kaneshiro, B.

10.1101/194563 — neuroscience — Posted on 2017-09-27

212 Real Time Estimation of Population Receptive Fields Using Gradient Descent

Senden, M.

10.1101/194621 — neuroscience — Posted on 2017-09-27

213 MaxTiC: Fast Ranking Of A Phylogenetic Tree By Maximum Time Consistency With Lateral Gene Transfers

Chauve, C.; Rafiey, A.; Davin, A. A.; Scornavacca, C.; Veber, P.; Boussau, B.; Szollosi, G.; Daubin, V.; Tannier, E.

10.1101/127548 — evolutionary biology — Posted on 2017-09-27

214 Avoidance of toxic misfolding does not explain the sequence constraints of highly expressed proteins across organisms

Plata, G.; Vitkup, D.

10.1101/168963 — evolutionary biology — Posted on 2017-09-27

215 Otolith microchemistry identifies diadromous populations of Patagonian river fishes

Alo, D.; Correa, C.; Samaniego, H.; Krabbenhoft, C. A.; Turner, T. F.

10.1101/174656 — ecology — Posted on 2017-09-27

216 Uncoordinated centrosome duplication cycle underlies the instability of non-diploid states in mammalian somatic cells

Yaguchi, K.; Matsui, R.; Yamamoto, T.; Tsukada, Y.; Shibanuma, A.; Kamimura, K.; Koda, T.; Uehara, R.

10.1101/194746 — cell biology — Posted on 2017-09-27

217 Quantification of cellular distribution as Poisson process in 3D matrix using a multiview light-sheet microscope

Colomb, W.; Osmond, M.; Durfee, C.; Krebs, M. D.; Sarkar, S. K.

10.1101/194571 — biophysics — Posted on 2017-09-27

218 Fast and Accurate Genomic Analyses using Genome Graphs

Rakocevic, G.; Semenyuk, V.; Spencer, J.; Browning, J.; Johnson, I.; Arsenijevic, V.; Nadj, J.; Ghose, K.; Suciu, M. C.; Ji, S.-G.; Demir, G.; Li, L.; Toptas, B. C.; Dolgoborodov, A.; Pollex, B.; Komar, P.; Li, Y.; Popovic, M.; Lee, W.-P.; Kallberg, M.; Jain, A.; Kural, D.

10.1101/194530 — bioinformatics — Posted on 2017-09-27

219 A coarse-graining, ultrametric approach to resolve the phylogeny of prokaryotic strains with frequent recombination

Pang, T. Y.

10.1101/094599 — bioinformatics — Posted on 2017-09-27

220 The Generalized Data Model for Clinical Research

Danese, M. D.; Halperin, M.; Duryea, J.; Duryea, R.

10.1101/194597 — bioinformatics — Posted on 2017-09-27

221 Fundamentals of injection molding for microfluidic cell-based assays

Lee, U. N.; Su, X.; Guckenberger, D. J.; Dostie, A. M.; Zhang, T.; Berthier, E.; Theberge, A. B.

10.1101/194605 — bioengineering — Posted on 2017-09-27

222 A preliminary analysis of the association between perceived stigma and HIV-related pain

Wadley, A. L.; Pincus, T.; Evangeli, M.

10.1101/194191 — physiology — Posted on 2017-09-27

223 Allosteric Activation of p300 Autoacetylation by the Tumor Suppressor p53

Kaypee, S.; Ghosh, R.; Sahadevan, S. A.; Shasmal, M.; Ghosh, P.; Roy, N.; Sengupta, J.; Roy, S.; Kundu, T. K.

10.1101/194704 — molecular biology — Posted on 2017-09-27

224 Direct PCR offers a fast and reliable alternative to conventional DNA isolation methods for animal gut microbiomes

Videvall, E.; Strandh, M.; Engelbrecht, A.; Cloete, S.; Cornwallis, C. K.

10.1101/193664 — microbiology — Posted on 2017-09-27

225 Integrative Statistical Inferences for Drug Sensitivity Biomarkers in Cancer

Ullah, E.; Shama, S.; Al Muftah, N.; Thompson, I. R.; Rawi, R.; Mall, R.; Bensmail, H.

10.1101/194670 — genomics — Posted on 2017-09-27

226 Genome-wide interaction study of stress-sensitivity and its prediction of major depressive disorder in UK Biobank and Generation Scotland

Arnau Soler, A.; Thomson, P.; Adams, M.; Generation Scotland, ; Hayward, C.

10.1101/194290 — genetics — Posted on 2017-09-27

227 Genome-wide Association Study Links APOEϵ4 and BACE1 Variants with Plasma Amyloid β Levels

Chouraki, V.; van der Lee, S. J.; Grenier-Boley, B.; Simino, J.; Adams, H.; Tosto, G.; White, C.; Terzikhan, N.; Cruchaga, C.; Knol, M. J.; Li, S.; Schraen, S.; Grove, M. L.; Satizabal, C. L.; Amin, N.; Berr, C.; Younkin, S.; Alzheimer's Disease Neuroimaging Initiative, ; Gottesman, R. F.; Buee, L.; Beiser, A.; Knopman, D. S.; Uitterlinden, A.; DeCarli, C.; Bressler, J.; DeStefano, A.; Dartigues, J.-F.; Yang, Q.; Boerwinkle, E.; Tzourio, C.; Fornage, M.; Ikram, M. A.; Amouyel, P.; de Jager, P.; Reitz, C.; Mosley, T. H.; Lambert, J.-C.; Seshadri, S.; van Duijn, C.

10.1101/194266 — genetics — Posted on 2017-09-27

228 Genomic signature of experimental adaptation of Staphylococcus aureus to a natural combination of insect antimicrobial peptides

Makarova, O.; Johnston, P.; Rodriguez-Rojas, A.; el-Shazely, B.; Moreno-Morales, J.; Rolff, J.

10.1101/194738 — evolutionary biology — Posted on 2017-09-27

229 Bdellovibrio and like organisms bacterial predators are not equally distributed in peri-alpine lakes

Paix, B.; Jacquet, S.

10.1101/194688 — ecology — Posted on 2017-09-27

230 Goodness of fit checks for binomial N-mixture models

Knape, J.; Arlt, D.; Barraquand, F.; Berg, A.; Chevalier, M.; Pärt, T.; Ruete, A.; Zmihorski, M.

10.1101/194340 — ecology — Posted on 2017-09-27

231 Resolving ESCRT-III spirals at the intercellular bridge of dividing cells using 3D STORM imaging

Goliand, I.; Dadosh, T.; Elia, N.

10.1101/194613 — cell biology — Posted on 2017-09-27

232 GLP-1 receptor agonist ameliorates obesity-induced chronic kidney injury via restoring renal lipid and energy metabolism homeostasis: revealed by metabolomics

Wang, C.; Li, L.; Liu, S.; Liao, G.; Li, L.; Chen, Y.; Cheng, J.; Lu, Y.; Liu, J.

10.1101/194654 — biophysics — Posted on 2017-09-27

233 Reconstruction of developmental landscapes by optimal-transport analysis of single-cell gene expression sheds light on cellular reprogramming.

Schiebinger, G.; Shu, J.; Tabaka, M.; Cleary, B.; Subramanian, V.; Solomon, A.; Liu, S.; Lin, S.; Berube, P.; Lee, L.; Chen, J.; Brumbaugh, J.; Rigollet, P.; Hochedlinger, K.; Jaenisch, R.; Regev, A.; Lander, E.

10.1101/191056 — bioinformatics — Posted on 2017-09-27

234 A distributed algorithm to maintain and repair the trail networks of arboreal ants

Chandrasekhar, A.; Gordon, D. M.; Navlakha, S.

10.1101/194480 — bioinformatics — Posted on 2017-09-27

235 Hydrogel encapsulation of living organisms for long-term microscopy

Burnett, K.; Edsinger, E.; Albrecht, D. R.

10.1101/194282 — bioengineering — Posted on 2017-09-27

236 Evaluating Internal Model Strength and Performance of Myoelectric Prosthesis Control Strategies

Shehata, A. W.; Scheme, E. J.; Sensinger, J. W.

10.1101/194225 — bioengineering — Posted on 2017-09-27

237 Low cost and open source multi-fluorescence imaging system for teaching and research in biology and bioengineering

Nunez, I.; Matute, T.; Herrera, R.; Keymer, J.; Marzullo, T.; Rudge, T.; Federici, F.

10.1101/194324 — synthetic biology — Posted on 2017-09-27

238 Arabidopsis phenotyping through Geometric Morphometrics

Manacorda, C. A.; Asurmendi, S.

10.1101/194449 — plant biology — Posted on 2017-09-27

239 Genetic differences in the aryl hydrocarbon receptor and CYP1A2 affect susceptibility to developmental polychlorinated biphenyl exposure in mice: Relevance to studies of human neurological disorders

Klinefelter, K.; Hooven, M. K.; Bates, C.; Colter, B. T.; Dailey, A.; Infante, S. K.; Kania-Korwel, I.; Lehmler, H.-J.; Lopez-Juarez, A.; Ludwig, C. P.; Curran, C. P.

10.1101/194472 — pharmacology and toxicology — Posted on 2017-09-27

240 Using Temporal ICA to Selectively Remove Global Noise While Preserving Global Signal in Functional MRI Data

Glasser, M. F.; Coalson, T. S.; Bijsterbosch, J. D.; Harrison, S. J.; Harms, M. P.; Anticevic, A.; Van Essen, D. C.; Smith, S. M.

10.1101/193862 — neuroscience — Posted on 2017-09-27

241 The Complex Simplicity of the Brittle Star Nervous System

Zueva, O.; Khoury, M.; Heinzeller, T.; Mashanova, D.; Mashanov, V.

10.1101/194316 — neuroscience — Posted on 2017-09-27

242 New evidence of a rhythmic priming effect that enhances grammaticality judgments in children

Chern, A.; Tillmann, B.; Vaughan, C.; Gordon, R. L.

10.1101/193961 — neuroscience — Posted on 2017-09-27

243 Smart switching in feedforward control of grip force during manipulation of elastic objects

White, O.; Karniel, A.; Leib, R.; Papaxanthis, C.; Nisky, I.

10.1101/194407 — neuroscience — Posted on 2017-09-27

244 Olfactory fear conditioning non-specifically enhances glomerular odor responses and increases representational overlap of learned and neutral odors

Ross, J. M.; Fletcher, M. L.

10.1101/194415 — neuroscience — Posted on 2017-09-27

245 MACS - a new SPM toolbox for model assessment, comparison and selection

Soch, J.; Allefeld, C.

10.1101/194365 — neuroscience — Posted on 2017-09-27

246 Transcriptional development of phospholipid and lipoprotein metabolism in different intestinal regions of Atlantic salmon (Salmo salar) fry

Jin, Y.; Olsen, R. E.; Ostensen, M.-A.; Gillard, G. B.; Korsvoll, S. A.; Santi, N.; Gjuvsland, A. B.; Vik, J. O.; Torgersen, J. S.; Sandve, S. R.; Olsen, Y.

10.1101/194514 — molecular biology — Posted on 2017-09-27

247 Histone deacetylase inhibition reduces deleterious cytokine release induced by ingenol stimulation

Larragoite, E. T.; Martins, L. J.; Spivak, A. M.; Nell, R. A.; Planelles, V.

10.1101/193946 — microbiology — Posted on 2017-09-27

248 A universal, genome-wide guide finder for CRISPR/Cas9 targeting in microbial genomes

Spoto, M.; Fleming, E.; Oh, J.

10.1101/194241 — microbiology — Posted on 2017-09-27

249 Rare Variant Burden in Known Dystonia Genes in Population Controls and Sporadic Dystonia Patients

Cirulli Rogers, L.; Hickey, P.; Tracy, S.; Johnson, J.; Caffall, Z.; Tsukuyama, K.; Scott, B.; Stacy, M.; Calakos, N.

10.1101/194399 — genomics — Posted on 2017-09-27

250 Extreme heterogeneity of influenza virus infection in single cells

Russell, A. B.; Trapnell, C.; Bloom, J. D.

10.1101/193995 — genomics — Posted on 2017-09-27

251 High-resolution genome-wide functional dissection of transcriptional regulatory regions in human

Wang, X.; He, L.; Goggin, S.; Saadat, A.; Wang, L.; Claussnitzer, M.; Kellis, M.

10.1101/193136 — genomics — Posted on 2017-09-27

252 Gene transfers, like fossils, can date the Tree of Life

Davin, A. A.; Tannier, E.; Williams, T. A.; Boussau, B.; Daubin, V.; Szollosi, G. J.

10.1101/193813 — evolutionary biology — Posted on 2017-09-27

253 Small RNAs are trafficked from the epididymis to developing mammalian sperm

Sharma, U.; Sun, F.; Reichholf, B.; Herzog, V.; Ameres, S.; Rando, O.

10.1101/194522 — developmental biology — Posted on 2017-09-27

254 MeDEStrand: an improved method to infer genome-wide absolute methylation level from DNA enrichment experiment

Xu, J.; Liu, S.; Yin, P.; Bulun, S.; Dai, Y.

10.1101/194431 — bioinformatics — Posted on 2017-09-27

255 Profiling DNA Methylation Differences Between Inbred Mouse Strains on the Illumina Human Infinium MethylationEPIC Microarray

Gujar, H.; Liang, J. W.; Wong, N. C.; Mozhui, K.

10.1101/194464 — bioinformatics — Posted on 2017-09-27

256 A synthetic stroma-free germinal center niche using material-surface driven polyvalent signaling efficiently induces antigen-specific humoral immunity ex vivo

Roh, K.-H.; Wilson, H. K.; Pradhan, P.; Bai, K.; Bohannon, C. D.; Dale, G.; Leleux, J. A.; Jacob, J.; Roy, K.

10.1101/194456 — bioengineering — Posted on 2017-09-27

257 Hormonal regulation of women’s prosocial, but not sexual, responses to kinship cues

Holzleitner, I. J. J.; Hahn, A. C.; Fisher, C. I.; Lee, A. J.; O'Shea, K. J.; Jones, B. C.; DeBruine, L. M.

10.1101/192054 — animal behavior and cognition — Posted on 2017-09-27

258 Multivariate association between single-nucleotide polymorphisms in Alzgene linkage regions and structural changes in the brain: discovery, refinement and validation

Szefer, E.; Lu, D.; Nathoo, F.; Beg, M. F.; Graham, J.; Alzheimer's Disease Neuroimaging Initiative,

10.1101/088310 — neuroscience — Posted on 2017-09-26

259 ZINB-WaVE: A general and flexible method for signal extraction from single-cell RNA-seq data

Risso, D.; Perraudeau, F.; Gribkova, S.; Dudoit, S.; Vert, J.-P.

10.1101/125112 — bioinformatics — Posted on 2017-09-26

260 Exploring the phenotypic consequences of tissue specific gene expression variation inferred from GWAS summary statistics

Barbeira, A. N.; Dickinson, S. P.; Torres, J. M.; Bonazzola, R.; Zheng, J.; Torstenson, E. S.; Wheeler, H. E.; Shah, K. P.; Edwards, T.; Garcia, T.; GTEx Consortium, ; Nicolae, D.; Cox, N. J.; Im, H. K.

10.1101/045260 — genomics — Posted on 2017-09-26

261 Signatures of positive selection and local adaptation to urbanization in white-footed mice (Peromyscus leucopus)

Harris, S. E.; Munshi-South, J.

10.1101/038141 — evolutionary biology — Posted on 2017-09-26

262 Genetic Adaptation of C. elegans to Environment Changes I: Multigenerational Analysis of the Transcriptome

Celen, I.; Doh, J. H.; Sabanayagam, C.

10.1101/194506 — genomics — Posted on 2017-09-26

263 Learning And Transfer Of Working Memory Gating Policies

Bhandari, A.; Badre, D.

10.1101/144543 — neuroscience — Posted on 2017-09-26

264 Medial frontal theta is entrained to rewarded actions

Amarante, L. M.; Caetano, M. S.; Laubach, M.

10.1101/144550 — neuroscience — Posted on 2017-09-26

265 Polymorphic dynamics of ribosomal proteins gene expression during somatic cell reprogramming and their differentiation into specialized cells-types

Guthikonda, P. K.; Bharathan, S. P.; Rayabaram, J.; Sornapudi, T. R.; Yellaboina, S. R.; Velayudhan, S. R.; Kurukuti, S.

10.1101/114868 — developmental biology — Posted on 2017-09-26

266 Internal Protein Motions in Molecular Dynamics Simulations of Bragg and Diffuse X-ray Scattering

Wall, M.

10.1101/190496 — biophysics — Posted on 2017-09-26

267 Depth Dependent Nanomechanical Analysis of Extracellular Matrix in Multicell Spheroids.

Vyas, V.; Solomon, M.; D'Souza, G. G. M.; Huey, B. D.

10.1101/193516 — bioengineering — Posted on 2017-09-26

268 Cell-type heterogeneity in the zebrafish olfactory placode is generated from progenitors within preplacodal ectoderm

Aguillon, R.; Batut, J.; Dufourcq, P.; Madelaine, R.; Subramanian, A.; Schilling, T. F.; Blader, P.

10.1101/194175 — developmental biology — Posted on 2017-09-26

269 Name Conditioning in Event-Related Brain Potentials

Kotchoubey, B.; Pavlov, Y. G.

10.1101/194134 — neuroscience — Posted on 2017-09-26

270 A neural decoder for learned vocal behavior

Arneodo, E.; Chen, S.; Gilja, V.; Gentner, T. Q.

10.1101/193987 — neuroscience — Posted on 2017-09-26

271 Hippocampal atrophy and intrinsic brain network alterations relate to impaired capacity for mind wandering in neurodegeneration

O'Callaghan, C.; Shine, J.; Hodges, J.; Andrews-Hanna, J.; Irish, M.

10.1101/194092 — neuroscience — Posted on 2017-09-26

272 Impaired competence in flagellar mutants of Bacillus subtilis is connected to the regulatory network governed by DegU

Hoelscher, T.; Schiklang, T.; Dragos, A.; Dietel, A.-K.; Kost, C.; Kovacs, A. T.

10.1101/194027 — microbiology — Posted on 2017-09-26

273 Systemic Markers of Adaptive and Innate Immunity Are Associated with COPD Severity and Spirometric Disease Progression

Halper-Stromberg, E.; Yun, J. H.; Parker, M. M.; Tal-Singer, R. M.; Gaggar, A.; Silverman, E. K.; Leach, S.; Bowler, R. P.; Castaldi, P. J.

10.1101/193920 — genomics — Posted on 2017-09-26

274 Improved Prokaryotic Gene Prediction Yields Insights into Transcription and Translation Mechanisms on Whole Genome Scale

Lomsadze, A.; Gemayel, K.; Tang, S.; Borodovsky, M.

10.1101/193490 — genomics — Posted on 2017-09-26

275 Leveraging lung tissue transcriptome to uncover candidate causal genes in COPD genetic associations

Obeidat, M.; Lamontagne, M.; Berube, J.-C.; Cho, M. H.; Hobbs, B. D.; de Jong, K.; Boezen, H. M.; the International COPD Genetics Consortium, ; Nickle, D.; Hao, K.; Timens, W.; van den Berge, M.; Joubert, P.; Laviolette, M.; Sin, D. D.; Pare, P. D.; Bosse, Y.

10.1101/193938 — genomics — Posted on 2017-09-26

276 The contribution of common genetic risk variants for ADHD to a general factor of childhood psychopathology

Brikell, I.; Larsson, H.; Lu, Y.; Pettersson, E.; Chen, Q.; Kuja-Halkola, R.; Karlsson, R.; Lahey, B. B.; Lichtenstein, P.; Martin, J.

10.1101/193573 — genetics — Posted on 2017-09-26

277 Determinants of genetic structure of the Sub-Saharan parasitic wasp Cotesia sesamiae

Branca, A.; Le Ru, B. P.; Calatayud, P.-A.; Obonyo, J. O.; Musyoka, B.; Capdevielle-Dulac, C.; Kaiser-Arnauld, L.; Silvain, J.-F.; Gauthier, J.; Paillusson, C.; Gayral, P.; Herniou, E.; Dupas, S.

10.1101/194084 — evolutionary biology — Posted on 2017-09-26

278 Smallholder agriculture and the fate of a hyperdiverse tropical biota

Socolar, J. B.; Valderrama Sandoval, E. H.; Wilcove, D. S.

10.1101/192955 — ecology — Posted on 2017-09-26

279 Fitness effects and transmission of phoretic nematodes of the burying beetle, Nicrophorus vespilloides

Wang, Y.; Rozen, D.

10.1101/193714 — ecology — Posted on 2017-09-26

280 Effects of confinement on body mass and site fidelity of feral pigeons during the setting-up of pigeon houses.

Gasparini, J.; Dauphin, L.; Favreliere, J.; Frantz, A.; Jacquin, L.; Recapet, C.; Prevot, A.-C.

10.1101/194043 — ecology — Posted on 2017-09-26

281 Enhancers mapping uncovers phenotypic heterogeneity and evolution in patients with luminal breast cancer.

Patten, D.; Corleone, G.; Gyorffy, B.; Erdos, E.; Saiakhova, A.; Goddard, K.; Vingiani, A.; Shousha, S.; Pongor, L. S.; Hadjiminas, D.; Schiavon, G.; Barry, P.; Palmieri, C.; Coombes, C.; Scacheri, P.; Pruneri, G.; Magnani, L.

10.1101/193771 — cancer biology — Posted on 2017-09-26

282 A literature review at genome scale: improving clinical variant assessment

Cassa, C.; Jordan, D. M.; Adzhubei, I.; Sunyaev, S.

10.1101/193870 — bioinformatics — Posted on 2017-09-26

283 Gauss-power mixing distributions comprehensively describe stochastic variations in RNA-seq data

Awazu, A.; Tanabe, T.; Kamitani, M.; Tezuka, A.; Nagano, A. J.

10.1101/194118 — bioinformatics — Posted on 2017-09-26

284 A Logic-Based Dynamic Modeling Approach to Explicate the Evolution of the Central Dogma of Molecular Biology

Jafari, M.; Ansari-Pour, N.; Azimzadeh, S.; Mirzaie, M.

10.1101/103127 — systems biology — Posted on 2017-09-26

285 The virome of Drosophila suzukii, an invasive pest of soft fruit

Medd, N. C.; Fellous, S.; Waldron, F.; Nakai, M.; Xuereb, A.; Cross, J. V.; Obbard, D. J.

10.1101/190322 — microbiology — Posted on 2017-09-26

286 Lacking conservation genomics in the giant Galapagos tortoise

Loire, E.; Galtier, N.

10.1101/101980 — evolutionary biology — Posted on 2017-09-26

287 Non-canonical aberrant DNA hypermethylation in glioma

Fernandez, A.; Bayon, G. F.; Sierra, M. I.; Urdinguio, R. G.; Torano, E. G.; Garcia, M.; Carella, A.; Lopez, V.; Santamarina, P.; Belmonte, T.; Tejedor, J. R.; Cobo, I.; Menendez, P.; Mangas, C.; Ferrero, C.; Rodrigo, L.; Astudillo, A.; Ortea, I.; Cueto, S.; Rodriguez-Gonzalez, P.; Garcia Alonso, J. I.; Mollejo, M.; Melendez, B.; Dominguez, G.; Bonilla, F.; Fraga, M. F.

10.1101/193789 — cancer biology — Posted on 2017-09-26

288 Nanopore-based single molecule sequencing of the D4Z4 array responsible for facioscapulohumeral muscular dystrophy

Mitsuhashi, S.; Nakagawa, S.; Ueda, M. T.; Imanishi, T.; Frith, M. C.; Mitsuhashi, H.

10.1101/157040 — bioinformatics — Posted on 2017-09-26

289 netDx: Interpretable patient classification using integrated patient similarity networks

Pai, S.; Hui, S.; Isserlin, R.; Shah, M. A.; Kaka, H.; Bader, G. D.

10.1101/084418 — bioinformatics — Posted on 2017-09-26

290 Complex Dynamics From Simple Cognition: The Primary Ratchet Effect In Animal Culture

McElreath, M. B.; Boesch, C.; Kuehl, H.; McElreath, R.

10.1101/134247 — animal behavior and cognition — Posted on 2017-09-26

291 Seasonal influenza circulation patterns and projections for Sep 2017 to Sep 2018

Bedford, T.; Neher, R.

10.1101/191676 — evolutionary biology — Posted on 2017-09-26

292 DAFi: A Directed Recursive Filtering and Clustering Approach to Data-Driven Identification of Cell Populations from Polychromatic Flow Cytometry Data

Lee, A. J.; Chang, I.; Burel, J. G.; Lindestam Arlehamn, C. S.; Weiskopf, D.; Peters, B.; Sette, A.; Scheuermann, R. H.; Qian, Y.

10.1101/193912 — bioinformatics — Posted on 2017-09-26

293 Gene regulatory network inference from single-cell data using multivariate information measures

Chan, T. E.; Stumpf, M.; Babtie, A. C.

10.1101/082099 — systems biology — Posted on 2017-09-26

294 Award or Reward? Which comes first, NIH funding or research impact?

Parra, L. C.; Hirsch, L.

10.1101/193755 — scientific communication and education — Posted on 2017-09-26

295 Comprehensive, high-resolution binding energy landscapes reveal context dependencies of transcription factor binding

Le, D. D.; Shimko, T. C.; Aditham, A. K.; Keys, A. M.; Orenstein, Y.; Fordyce, P.

10.1101/193904 — biophysics — Posted on 2017-09-26

296 The mechano-chemistry of reverse transcriptase

Malik, O.; Khamis, H.; Rudnizky, S.; Kaplan, A.

10.1101/194159 — biophysics — Posted on 2017-09-26

297 Modeling the schizophrenias: subunit-specific NMDAR antagonism dissociates oscillatory signatures of frontal hypofunction and hippocampal hyperfunction

Pittman-Polletta, B. R.; Hu, K.; Kocsis, B.

10.1101/191882 — neuroscience — Posted on 2017-09-25

298 Effects of tDCS Dosage on Working Memory in Healthy Participants

Nikolin, S.; Martin, D.; Loo, C. K.; Boonstra, T. W.

10.1101/192419 — neuroscience — Posted on 2017-09-25

299 Architecture of mammalian centriole distal appendages accommodates distinct blade and matrix functional elements

Yang, T. T.; Chong, W. M.; Wang, W.-J.; Mazo, G.; Tanos, B.; Chen, Z.; Tran, M. N. T.; Chen, Y.-D.; Weng, R. R.; Huang, C.-E.; Jane, W.-N.; Tsou, M.-F. B.; Liao, J.-C.

10.1101/193474 — cell biology — Posted on 2017-09-25

300 Neural precursors of decisions that matter--an ERP study of deliberate and arbitrary choice

Maoz, U.; Yaffe, G.; Koch, C.; Mudrik, L.

10.1101/097626 — neuroscience — Posted on 2017-09-25

301 Phage mobility is a core determinant of phage-bacteria coexistence in biofilms

Simmons, M.; Drescher, K.; Nadell, C.; Bucci, V.

10.1101/086462 — microbiology — Posted on 2017-09-25

302 SETDB1 prevents TET2-dependent activation of IAP retroelements in naïve embryonic stem cells

Deniz, O.; de la Rica, L.; Cheng, K. C. L.; Spensberger, D.; Branco, M. R.

10.1101/193854 — genetics — Posted on 2017-09-25

303 Demography and selection shape transcriptomic divergence in field crickets

Blankers, T.; Vilaca, S.; Waurick, I.; Gray, D.; Hennig, M.; Mazzoni, C.; Mayer, F.; Berdan, E.

10.1101/193839 — evolutionary biology — Posted on 2017-09-25

304 Supervised machine learning reveals introgressed loci in the genomes of Drosophila simulans and D. sechellia

Schrider, D.; Ayroles, J.; Matute, D. R.; Kern, A. D.

10.1101/170670 — evolutionary biology — Posted on 2017-09-25

305 Dephosphorylation of the NPR2 guanylyl cyclase contributes to inhibition of bone growth by fibroblast growth factor

Shuhaibar, L. C.; Robinson, J. W.; Shuhaibar, N. P.; Egbert, J. R.; Vigone, G.; Baena, V.; Kaback, D.; Yee, S.-P.; Feil, R.; Fisher, M. C.; Dealy, C. N.; Potter, L. R.; Jaffe, L. A.

10.1101/193847 — developmental biology — Posted on 2017-09-25

306 Human olfactory cortex contributes to emotional and perceptual aspects of aversive associative learning and memory

You, Y.; Novak, L.; Clancy, K.; Li, W.

10.1101/193748 — neuroscience — Posted on 2017-09-25

307 Copy number heterogeneity, large origin tandem repeats, and interspecies recombination in HHV-6A and HHV-6B reference strains

Greninger, A.; Roychoudhury, P.; Makhsous, N.; Hanson, D.; Chase, J.; Krueger, G.; Xie, H.; Huang, M.-L.; Saunders, L.; Ablashi, D.; Koelle, D. M.; Cook, L.; Jerome, K. R.

10.1101/193805 — genomics — Posted on 2017-09-25

308 Why human papillomavirus acute infections matter

Alizon, S.; Murall, C. L.; Bravo, I. G.

10.1101/144576 — epidemiology — Posted on 2017-09-25

309 Sensory neuropathy-causing mutations in ATL3 cause aberrant ER membrane tethering

Krols, M.; Detry, S.; Asselbergh, B.; Almeida-Souza, L.; Kremer, A.; Lippens, S.; de Rycke, R.; De Winter, V.; Müller, F.-J.; Kurth, I.; McMahon, H. T.; Savvides, S. N.; Timmerman, V.; Janssens, S.

10.1101/192484 — cell biology — Posted on 2017-09-25

310 Continuous rearrangement of the postsynaptic gephyrin scaffolding domain: a super-resolution quantified and energetic approach

Rodriguez, P. C.; Almeida, L. G.; Triller, A.

10.1101/193698 — biophysics — Posted on 2017-09-25

311 Deep learning diffusion fingerprinting to detect brain tumour response to chemotherapy

Roberts, T. A.; Hipwell, B.; Agliardi, G.; d'Esposito, A.; Taylor, V.; Lythgoe, M. F.; Walker-Samuel, S.

10.1101/193730 — biophysics — Posted on 2017-09-25

312 PSGfinder: fast identification of genes under divergent positive selection using the dynamic windows method

Tuberosa, J.; Montoya-Burgos, J. I.

10.1101/193722 — bioinformatics — Posted on 2017-09-25

313 Developing an in silico minimum inhibitory concentration panel test for Klebsiella pneumoniae

Nguyen, M.; Brettin, T.; Long, S. W.; Olsen, R. J.; Musser, J. M.; Olson, R.; Shukla, M.; Stevens, R. L.; Xia, F.; Yoo, H.; Davis, J.

10.1101/193797 — bioinformatics — Posted on 2017-09-25

314 A duplex MIPs-based biological-computational cell lineage discovery platform

Tao, L.; Raz, O.; Marx, Z.; Biezuner, T.; Amir, S.; Milo, L.; Adar, R.; Onn, A.; Chapal-Ilani, N.; Berman, V.; Levy, R.; Oron, B.; Shapiro, E.

10.1101/191296 — systems biology — Posted on 2017-09-25

315 Cholecystokinin release triggered by presynaptic NMDA receptors produces LTP and sound-sound associative memory formation

Li, X.; Chen, X.; Wong, Y. T.; Wang, H.; Feng, H.; Zheng, X.; Feng, J.; Baibado, J. T.; Jesky, R.; Peng, Y.; Wang, Z.; Xie, H.; Sun, W.; Zhang, Z.; Zhang, X.; He, L.; Zhang, N.; Zhang, Z.; Tang, P.; Su, J.-F.; Hu, L.-L.; Liu, Q.; He, X.-B.; Tan, A.; Sun, X.; Li, M.; Wong, K.; Wang, X.; Guo, Y. P.; Xu, F.; He, J.

10.1101/188839 — neuroscience — Posted on 2017-09-25

316 A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae)

Schoville, S. D.; Chen, Y. H.; Andersson, M. N.; Benoit, J. B.; Bhandari, A.; Bowsher, J. H.; Brevik, K.; Cappelle, K.; Chen, M.-J. M.; Childers, A. K.; Childers, C.; Christiaens, O.; Clements, J.; Elpidina, E. N.; Engsontia, P.; Friedrich, M.; Garcia-Robles, I.; Gibbs, R. A.; Goswami, C.; Grapputo, A.; Gruden, K.; Grynberg, M.; Henrissat, B.; Jennings, E. C.; Jones, J. W.; Kalsi, M.; Khan, S. A.; Kumar, A.; Li, F.; Lombard, V.; Ma, X.; Martynov, A.; Miller, N. J.; Mitchell, R. F.; Munoz-Torres, M.; Muszewska, A.; Oppert, B.; Palli, S. R.; Panfilio, K. A.; Pauchet, Y.; Perkin, L. C.; Petek, M.

10.1101/192641 — genomics — Posted on 2017-09-25

317 Scikit-ribo: Accurate estimation and robust modeling of translation dynamics at codon resolution

Fang, H.; Huang, Y.-F.; Radhakrishnan, A.; Siepel, A.; Lyon, G. J.; Schatz, M. C.

10.1101/156588 — bioinformatics — Posted on 2017-09-25

318 ANTENNA, a Multi-Rank, Multi-Layered Recommender System for Inferring Reliable Drug-Gene-Disease Associations: Repurposing Diazoxide as a Targeted Anti-Cancer Therapy

Wang, A.; Lim, H.; Cheng, S.-Y.; Xie, L.

10.1101/192385 — bioinformatics — Posted on 2017-09-25

319 Strelka2: Fast and accurate variant calling for clinical sequencing applications

Kim, S.; Scheffler, K.; Halpern, A. L.; Bekritsky, M. A.; Noh, E.; Källberg, M.; Chen, X.; Beyter, D.; Krusche, P.; Saunders, C. T.

10.1101/192872 — bioinformatics — Posted on 2017-09-25

320 Blockwise Site Frequency Spectra for Inferring Complex Population Histories and Recombination

Beeravolu Reddy, C.; Hickerson, M. J.; Frantz, L. A. F.; Lohse, K.

10.1101/077958 — evolutionary biology — Posted on 2017-09-25

321 GFF3sort: a novel tool to sort GFF3 files for tabix indexing

Zhu, T.; Liang, C.; Meng, Z.; Guo, S.; Zhang, R.

10.1101/145938 — bioinformatics — Posted on 2017-09-25

322 Integrated pathogen load and dual transcriptome analysis of systemic host-pathogen interactions in severe malaria

Lee, H. J.; Walther, M.; Georgiadou, A.; Nwakanma, D.; Stewart, L. B.; Levin, M.; Otto, T. D.; Conway, D. J.; Coin, L. J.; Cunnington, A. J.

10.1101/193631 — systems biology — Posted on 2017-09-25

323 Spatial modeling of the membrane-cytosolic interface in protein kinase signal transduction

Giese, W.; Milicic, G.; Schröder, A.; Klipp, E.

10.1101/191940 — systems biology — Posted on 2017-09-25

324 CRISPR/Cas9 cleavages in budding yeast reveal templated insertions and strand-specific insertion/deletion profiles

Lemos, B. R.; Kaplan, A. C.; Bae, J. E.; Ferazzoli, A.; Kuo, J.; Anand, R. P.; Waterman, D. P.; Haber, J. E.

10.1101/193466 — molecular biology — Posted on 2017-09-25

325 Isolation of phosphate solubilizing Pseudomonas strains from apple rhizosphere in the Trans Himalayan region of Himachal Pradesh, India

Sharma, R.; Pal, J.; Kaur, M.

10.1101/193672 — microbiology — Posted on 2017-09-25

326 Sepsis: Partial least squares structural equation modelling (PLS-SEM) suggests a critical role for anti-inflammatory responses in clinical severity

Mukherjee, R.; Barman, P.; Thatoi, P.; Prusty, B.; Tripathy, R.; Das, B.; Ravindran, B.

10.1101/193615 — immunology — Posted on 2017-09-25

327 Coupling optogenetics and light-sheet microscopy to study signal transduction in vivo

Kaur, P.; Saunders, T. E.; Tolwinski, N. S.

10.1101/114686 — developmental biology — Posted on 2017-09-25

328 Non-invasive measurement of hepatic venous oxygen saturation (ShvO2) with quantitative susceptibility mapping in normal mouse liver and livers bearing colorectal metastases

Finnerty, E.; Ramasawmy, R.; O'Callaghan, J.; Connell, J.; Lythgoe, M. F.; Shmueli, K.; Thomas, D.; Walker-Samuel, S.

10.1101/193656 — biophysics — Posted on 2017-09-25

329 Development of noninvasive biomarkers of response to proteasome inhibitor therapy (ixazomib) by imaging disrupted protein homeostasis in mouse models of solid tumors

Zhu, Y.; Ramasawmy, R.; Johnson, S. P.; Taylor, V.; Gibb, A.; Pedley, R. B.; Chattopadhyay, N.; Lythgoe, M. F.; Golay, X.; Bradley, D.; Walker-Samuel, S.

10.1101/193623 — biophysics — Posted on 2017-09-25

330 Reprogramming, oscillations and transdifferentiation in epigenetic landscapes

Kaity, B.; Sarkar, R.; Chakrabarti, B.; Mitra, M. K.

10.1101/193599 — systems biology — Posted on 2017-09-25

331 Antibodies set boundaries limiting microbial metabolite penetration and the resultant mammalian host response

Uchimura, Y.; Fuhrer, T.; Li, H.; Lawson, M. A.; Zimmermann, M.; Gomez de Aguero, M.; Yilmaz, B.; Ronchi, F.; Sorribas, M.; Hapfelmeier, S.; Ganal-Vonarburg, S. C.; McCoy, K. D.; Sauer, U.; Macpherson, A. J.

10.1101/193581 — immunology — Posted on 2017-09-25

332 QuiXoT: quantification and statistics of high-throughput proteomics by stable isotope labelling

Trevisan-Herraz, M.; Jorge, I.; Bonzon-Kulichenko, E.; Navarro, P.; Vazquez, J.

10.1101/193607 — bioinformatics — Posted on 2017-09-25

333 Proteomic Characterization Of The Venom Of Five Bombus (Thoracobombus) Species

Barkan, N. P.; Bayazit, M. B.; Ozel Demiralp, F. D.

10.1101/193524 — pharmacology and toxicology — Posted on 2017-09-25

334 Synaptic co-transmission of acetylcholine and GABA regulates hippocampal states

Takacs, V. T.; Cserep, C.; Schlingloff, D.; Posfai, B.; Szonyi, A.; Sos, K. E.; Kornyei, Z.; Denes, A.; Gulyas, A. I.; Freund, T. F.; Nyiri, G.

10.1101/193318 — neuroscience — Posted on 2017-09-25

335 Cryptococcus neoformans can form titan-like cells in vitro in response to multiple signals that require the activation of several transduction pathways

Trevijano-Contador, N.; Rossi, S. A.; de Oliveira, H. C.; Llorente, I.; Correia, I.; Pla, J.; Zaballos, A.; Arino, J.; Zaragoza, O.

10.1101/193540 — microbiology — Posted on 2017-09-25

336 Extensive Regulatory Changes in Genes Affecting Vocal and Facial Anatomy Separate Modern Humans from Neanderthals and Denisovans

Gokhman, D.; Agranat-Tamir, L.; Housman, G.; Garcia-Perez, R.; Nissim-Rafinia, M.; Mallick, S.; Nieves-Colon, M.; Li, H.; Rohland, N.; Alpaslan-Roodenberg, S.; Novak, M.; Gu, H.; Ferrando-Bernal, M.; Gelabert, P.; Lipende, I.; Kondova, I.; Bontrop, R.; Quillen, E. E.; Meissner, A.; Stone, A. C.; Pusey, A. E.; Mjungu, D.; Kandel, L.; Liebergall, M.; Prada, M. E.; Vidal, J. M.; Prüfer, K.; Krause, J.; Yakir, B.; Pääbo, S.; Pinhasi, R.; Lalueza-Fox, C.; Reich, D.; Marques-Bonet, T.; Meshorer, E.; Carmel, L.

10.1101/106955 — genetics — Posted on 2017-09-25

337 Natural changes in light interact with circadian regulation at promoters to control gene expression in cyanobacteria

Piechura, J. R.; Amarnath, K.; O'Shea, E. K.

10.1101/193557 — bioinformatics — Posted on 2017-09-25

338 An automated model test system for systematic development and improvement of gene expression models

Reis, A. C.; Salis, H.

10.1101/193367 — synthetic biology — Posted on 2017-09-25

339 The importance of geometry in the corneal micropocket assay

Grogan, J. A.; Connor, A. J.; Pitt-Francis, J. M.; Maini, P. K.; Byrne, H. M.

10.1101/193433 — physiology — Posted on 2017-09-25

340 Layer-Specific Molecular Dynamics of PKMζ in Sensorimotor Cortex During Acquisition and Storage of Procedural Memory

Gao, P. P.; Goodman, J. H.; Sacktor, T. C.; Francis, J. T.

10.1101/193508 — neuroscience — Posted on 2017-09-25

341 Differential Impacts of Dietary Modification on Individual Metabolic Phenotypes and their Relationship to Blood Pressure: Evidence of Latent Dietary Responder Sub-phenotypes

Loo, R. L.; Zou, X.; Appel, L.; Nicholson, J.; Holmes, E.

10.1101/193359 — molecular biology — Posted on 2017-09-25

342 Prasinovirus attack of Ostreococcus is furtive by day but savage by night

Derelle, E.; Yau, S.; Moreau, H.; Grimsley, N. H.

10.1101/191478 — microbiology — Posted on 2017-09-25

343 Separating an allele associated with late flowering and slow maturation of Arabidopsis thaliana from population structure

Zan, Y.; Feng, X.; Ning, Z.; Xu, W.; Wan, Q.; Zeng, D.; Zeng, Z.; Liu, Y.; Shen, X.

10.1101/193417 — genetics — Posted on 2017-09-25

344 An experimental test of the mutation-selection balance model for the maintenance of genetic variance in fitness components

Sharp, N. P.; Agrawal, A. F.

10.1101/193425 — evolutionary biology — Posted on 2017-09-25

345 Expedited Assessment of Terrestrial Arthropod Diversity by Coupling Malaise Traps with DNA Barcoding

deWaard, J. R.; Levesque-Beaudin, V.; deWaard, S. L.; Ivanova, N. V.; McKeown, J. T. A.; Miskie, R.; Naik, S.; Perez, K.; Ratnasingham, S.; Sobel, C. N.; Sones, J. E.; Steinke, C.; Telfer, A. C.; Young, A. D.; Young, M. R.; Zakharov, E. V.; Hebert, P. D. N.

10.1101/192732 — ecology — Posted on 2017-09-25

346 Architecture of mammalian centriole distal appendages accommodates distinct blade and matrix functional elements

Yang, T. T.; Chong, W. M.; Wang, W.-J.; Mazo, G.; Tanos, B.; Chen, Z.; Tran, M. N. T.; Chen, Y.-D.; Weng, R. R.; Huang, C.-E.; Jane, W.-N.; Tsou, M.-F. B.; Liao, J.-C.

10.1101/193474 — cell biology — Posted on 2017-09-25

347 Depth Dependent Nanomechanical Analysis of Extracellular Matrix in Multicell Spheroids.

Vyas, V.; Solomon, M.; D'Souza, G. G. M.; Huey, B. D.

10.1101/193516 — bioengineering — Posted on 2017-09-25

348 PERFORMANCE OF AN AMBULATORY DRY-EEG DEVICE FOR AUDITORY CLOSED-LOOP STIMULATIONS IN THE HOME ENVIRONMENT

Debellemaniere, E.; Chambon, S.; Pinaud, C.; Thorey, V.; Leger, D.; Chennaoui, M.; Arnal, P. J.; Galtier, M. N.

10.1101/181529 — bioengineering — Posted on 2017-09-25

349 High concentrations of boric acid induce autophagy in cancer cell lines

Al-Ali, R.; Gonzalez-Sarmiento, R.

10.1101/193441 — cancer biology — Posted on 2017-09-25

350 A QM/MM Study of Biomimetic Catalysis of Diels-Adler reactions Using Cyclodextrins

Chen, W.; Sun, L.; Tang, Z.; Chang, C.-e.

10.1101/169565 — biophysics — Posted on 2017-09-24

351 RecBCD possesses strong coupling between DNA and nucleotide binding that may propel a stepping mechanism during translocation.

Gaydar, V.; Zananir, R.; Dvir, O.; Kaplan, A.; Henn, A.

10.1101/190215 — biochemistry — Posted on 2017-09-24

352 Insights into Hepatitis C Transmission in Young Persons who Inject Drugs: Results From a Dynamic Modeling Approach Informed by State-Level Public Health Surveillance Data

Gicquelais, R. E.; Foxman, B.; Coyle, J.; Eisenberg, M. C.

10.1101/193185 — epidemiology — Posted on 2017-09-24

353 Interphase Human Chromosome Exhibits Out of Equilibrium Glassy Dynamics

Shi, G.; Liu, L.; Hyeon, C.; Thirumalai, D.

10.1101/193375 — biophysics — Posted on 2017-09-24

354 In vivo, chromatin is a fluctuating polymer chain at equilibrium constrained by internal friction

Socol, M.; Wang, R.; Jost, D.; Carrivain, P.; Dahirel, V.; Zedek, A.; Normand, C.; Bystricky, K.; Victor, J.-M.; Gadal, O.; Bancaud, A.

10.1101/192765 — genetics — Posted on 2017-09-24

355 Efficient Multi-task chemogenomics for drug specificity prediction

Playe, B.; Azencott, C.-A.; Stoven, V.

10.1101/193391 — bioinformatics — Posted on 2017-09-24

356 Bcl11b is a Newly Identified Regulator of Vascular Smooth Muscle Phenotype and Arterial Stiffness

Valisno, J. A.; Elavalakanar, P.; Nicholson, C.; Singh, K.; Avram, D.; Cohen, R. A.; Mitchell, G. F.; Morgan, K. G.; Seta, F.

10.1101/193110 — physiology — Posted on 2017-09-24

357 Electrophysiological correlates of semantic dissimilarity reflect the comprehension of natural, narrative speech.

Broderick, M. P.; Anderson, A. J.; Di Liberto, G. M.; Crosse, M. J.; Lalor, E. C.

10.1101/193201 — neuroscience — Posted on 2017-09-24

358 2D:4D and spatial abilities: From rats to humans

Muller, N.; Campbell, S.; Nonaka, M.; Rost, T.; Pipa, G.; Konrad, B.; Steiger, A.; Czisch, M.; Fernandez, G.; Dresler, M.; Genzel, L.

10.1101/193342 — neuroscience — Posted on 2017-09-24

359 Effector-dependent response deterioration by stochastic transformations reveals mixed reference frames for decisions

Murdison, T. S.; Standage, D.; Lefevre, P.; Blohm, G.

10.1101/193235 — neuroscience — Posted on 2017-09-24

360 Perimenstrual Symptom Exacerbation in Borderline Personality Disorder: Evidence from Multilevel Models and the Carolina Premenstrual Assessment Scoring System

Eisenlohr-Moul, T.; Schmalenberger, K. M.; Owens, S.; Peters, J. R.; Dawson, D. N.; Girdler, S. S.

10.1101/192658 — neuroscience — Posted on 2017-09-24

361 Adaptation to a Space-variant Visuomotor Delay can Cause Neglect-like Effects on Drawing Symmetry

Avraham, C.; Avraham, G.; Mussa-Ivaldi, F.; Nisky, I.

10.1101/193334 — neuroscience — Posted on 2017-09-24

362 Daily activity and visual discrimination reflects the eye organization of weaver ant Oecophylla smaragdina (Insecta: Hymenoptera: Formicidae)

Mishra, M.; Bhadani, S.

10.1101/193243 — neuroscience — Posted on 2017-09-24

363 Predictive orientation remapping maintains a stable retinal percept

Murdison, T. S.; Blohm, G.; Bremmer, F.

10.1101/193250 — neuroscience — Posted on 2017-09-24

364 Systematic identification of cancer-specific MHC-binding peptides with RAVEN

Baldauf, M. C.; Gerke, J. S.; Kirschner, A.; Blaeschke, F.; Effenberger, M.; Schober, K.; Alba Rubio, R.; Kanaseki, T.; Kiran, M. M.; Dallmayer, M.; Musa, J.; Akpolat, N.; Akatli, A. N.; Rosman, F. C.; Ozen, O.; Sugita, S.; Hasegawa, T.; Sugimura, H.; Baumhoer, D.; Knott, M. M.; Sannino, G.; Marchetto, A.; Li, J.; Busch, D. H.; Feuchtinger, T.; Ohmura, S.; Orth, M. F.; Thiel, U.; Kirchner, T.; Grunewald, T. G.

10.1101/193276 — immunology — Posted on 2017-09-24

365 Human Ageing Genomic Resources: 2018 Update

Tacutu, R.; Thornton, D.; Johnson, E.; Budovsky, A.; Barardo, D.; Craig, T.; Lehmann, G.; Toren, D.; Fraifeld, V.; de Magalhaes, J. P.

10.1101/193326 — genomics — Posted on 2017-09-24

366 CUT&RUN: Targeted in situ genome-wide profiling with high efficiency for low cell numbers

Skene, P. J.; Henikoff, S.

10.1101/193219 — genomics — Posted on 2017-09-24

367 WHOLE GENOME BISULPHITE SEQUENCING USING THE ILLUMINA HISEQ X SYSTEM

Suzuki, M.; Liao, W.; Wos, F.; Johnston, A. D.; DeGrazia, J.; Ishii, J.; Bloom, T.; Zody, M. C.; Germer, S.; Greally, J. M.

10.1101/193193 — genomics — Posted on 2017-09-24

368 Evolutionary Transitions in Heritability and Individuality

Bourrat, P.

10.1101/192443 — evolutionary biology — Posted on 2017-09-24

369 A Mechanism of ATF5 Anti-Apoptotic Action that Promotes Leukemia Cells Survival

Persengiev, S.

10.1101/193292 — cancer biology — Posted on 2017-09-24

370 A duplex MIPs-based biological-computational cell lineage discovery platform

Tao, L.; Raz, O.; Marx, Z.; Biezuner, T.; Amir, S.; Milo, L.; Adar, R.; Onn, A.; Chapal-Ilani, N.; Berman, V.; Levy, R.; Oron, B.; Shapiro, E.

10.1101/191296 — systems biology — Posted on 2017-09-24

371 Comprehensive analysis of central carbon metabolism reveals multiple connections between nutrients, biosynthetic capacity, and cell morphology in Escherichia coli

Westfall, C. S.; Levin, P. A.

10.1101/191585 — microbiology — Posted on 2017-09-24

372 The Evolutionary Genomics of Grape (Vitis vinifera ssp. vinifera) Domestication

Zhou, Y.; Massonnet, M.; Sanjak, J.; Cantu, D.; Gaut, B. S.

10.1101/146373 — evolutionary biology — Posted on 2017-09-24

373 The genomic landscape at a late stage of stickleback speciation: high genomic divergence interspersed by small localized regions of introgression

Ravinet, M.; Yoshida, K.; Shigenobu, S.; Toyoda, A.; Fujiyama, A.; Kitano, J.

10.1101/190629 — evolutionary biology — Posted on 2017-09-24

374 Persistent one-way walking in a circular arena in Drosophila melanogaster Canton-S strain

Xiao, C.; Qiu, S.; Robertson, R. M.

10.1101/145888 — animal behavior and cognition — Posted on 2017-09-24

375 Evolution Of Pre-Copulatory And Post-Copulatory Strategies Of Inbreeding Avoidance And Associated Polyandry

Duthie, A. B.; Bocedi, G.; Germain, R. R.; Reid, J. M.

10.1101/136093 — evolutionary biology — Posted on 2017-09-24

376 Gene expression variability across cells and species shapes innate immunity

Hagai, T.; Chen, X.; Miragaia, R. J.; Gomes, T.; Rostom, R.; Kunowska, N.; Proserpio, V.; Donati, G.; Bossini-Castillo, L.; Naamati, G.; Emerton, G.; Trynka, G.; Kondova, I.; Denis, M.; Teichmann, S. A.

10.1101/137992 — evolutionary biology — Posted on 2017-09-24

377 Temperature-driven selection on metabolic traits increases the strength of an algal-grazer interaction in naturally warmed streams

Schaum, C. E.; Ffrench-Constant, R.; Lowe, C.; Olafsson, J. S.; Padfield, D.; Yvon-Durocher, G.; Students of Bio244 course,

10.1101/104513 — ecology — Posted on 2017-09-24

378 Re-evaluating functional landscape of the cardiovascular system during development

Takada, N.; Omae, M.; Sagawa, F.; Chi, N.; Endo, S.; Kozawa, S.; Sato, T. N.

10.1101/102723 — developmental biology — Posted on 2017-09-24

379 Microglia from offspring of dams with allergic asthma exhibit epigenomic alterations in genes dysregulated in autism

Vogel Ciernia, A.; Careaga, M.; LaSalle, J.; Ashwood, P.

10.1101/192997 — neuroscience — Posted on 2017-09-23

380 Filling Gaps in Bacterial Amino Acid Biosynthesis Pathways with High-throughput Genetics

Price, M.; Zane, G. M.; Kuehl, J. V.; Melnyk, R. A.; Wall, J. D.; Deutschbauer, A. M.; Arkin, A. P.

10.1101/192971 — microbiology — Posted on 2017-09-23

381 Extracting Evidence Fragments for Distant Supervision of Molecular Interactions

Burns, G. A.; Dasigi, P.; Hovy, E. H.

10.1101/192856 — bioinformatics — Posted on 2017-09-23

382 CRISPR/Cas9-mediated resistance to cauliflower mosaic virus

Liu, H.; Soyars, C.; Li, J.; Fei, Q.; He, G.; Peterson, B. A.; Meyers, B. C.; Nimchuk, Z. L.; Wang, X.

10.1101/191809 — plant biology — Posted on 2017-09-23

383 Long-term cardiovascular re-programming by short-term perinatal exposure to nicotine‘s main metabolite cotinine

Bastianini, S.; Lo Martire, V.; Silvani, A.; Zoccoli, G.; Berteotti, C.; Lagercrantz, H.; Arner, A.; Cohen, G.

10.1101/193003 — physiology — Posted on 2017-09-23

384 Predicting drug safety and communicating risk: benefits of a Bayesian approach

Lazic, S. E.; Edmunds, N.; Pollard, C. E.

10.1101/193169 — pharmacology and toxicology — Posted on 2017-09-23

385 Effective reserve: a latent variable to improve outcome prediction in stroke

Schirmer, M. D.; Etherton, M. R.; Dalca, A. V.; Giese, A.-K.; Cloonan, L.; Wu, O.; Golland, P.; Rost, N. S.

10.1101/192823 — neuroscience — Posted on 2017-09-23

386 Progesterone receptor maintains estrogen receptor gene expression by regulating DNA methylation in hormone-free breast cancer cells

Verde, G.; I De Llobet, L.; H.G.Wright, R.; Quilez, J.; Peiro, S.; Le Dily, F.; Beato, M.

10.1101/192567 — molecular biology — Posted on 2017-09-23

387 Contribution of the β-glucosidase BglC to the Onset of the Pathogenic Lifestyle of Streptomyces scabies

Jourdan, S.; Francis, I. M.; Deflandre, B.; Tenconi, E.; Riley, J.; Planckaert, S.; Tocquin, P.; Martinet, L.; Devreese, B.; Loria, R.; Rigali, S.

10.1101/192591 — microbiology — Posted on 2017-09-23

388 A common pattern of DNase-I footprinting throughout the human mtDNA unveils clues for a chromatin-like organization

Blumberg, A.; Danko, C. G.; Kundaje, A.; Mishmar, D.

10.1101/193037 — genomics — Posted on 2017-09-23

389 Multi-platform discovery of haplotype-resolved structural variation in human genomes

Chaisson, M. J. P.; Sanders, A. D.; Zhao, X.; Malhotra, A.; Porubsky, D.; Rausch, T.; Gardner, E. J.; Rodriguez, O.; Guo, L.; Collins, R. L.; Fan, X.; Wen, J.; Handsaker, R. E.; Fairley, S.; Kronenberg, Z. N.; Kong, X.; Hormozdiari, F.; Lee, D.; Wenger, A. M.; Hastie, A.; Antaki, D.; Audano, P.; Brand, H.; Cantsilieris, S.; Cao, H.; Cerveira, E.; Chen, C.; Chen, X.; Chin, C.-S.; Chong, Z.; Chuang, N. T.; Church, D. M.; Clarke, L.; Farrell, A.; Flores, J.; Galeev, T.; David, G.; Gujral, M.; Guryev, V.; Haynes-Heaton, W.; Korlach, J.; Kumar, S.; Kwon, J. Y.; Lee, J. E.; Lee, J.; Lee, W.-P.; Lee,

10.1101/193144 — genomics — Posted on 2017-09-23

390 Genetic validation of bipolar disorder identified by automated phenotyping using electronic health records

Chen, C.-Y.; Lee, P.; Castro, V.; Minnier, J.; Charney, A.; Stahl, E.; Ruderfer, D.; Murphy, S.; Gainer, V.; Cai, T.; Jones, I.; Pato, C.; Pato, M.; Landen, M.; Sklar, P.; Perlis, R.; Smoller, J.

10.1101/193011 — genetics — Posted on 2017-09-23

391 Strelka2: Fast and accurate variant calling for clinical sequencing applications

Kim, S.; Scheffler, K.; Halpern, A. L.; Bekritsky, M. A.; Noh, E.; Källberg, M.; Chen, X.; Beyter, D.; Krusche, P.; Saunders, C. T.

10.1101/192872 — bioinformatics — Posted on 2017-09-23

392 miRNAgFree: prediction and profiling of novel microRNAs without genome assembly

Aparicio, E. L.; Rueda, A.; Fromm, B.; Gomez-Martin, C.; Lebron, R.; Oliver, J. L.; Marchal, J. A.; Kotsyfakis, M.; Hackenberg, M.

10.1101/193094 — bioinformatics — Posted on 2017-09-23

393 Biosensor libraries harness large classes of binding domains for allosteric transcription regulators

Juarez, J. F.; Lecube-Azpeitia, B.; Brown, S. L.; Church, G. M.

10.1101/193029 — synthetic biology — Posted on 2017-09-23

394 A plasmid-based Escherichia coli gene expression system with cell-to-cell variation below the extrinsic noise limit

Hensel, Z.

10.1101/192963 — synthetic biology — Posted on 2017-09-23

395 Characterization and Validation of a Novel Group of Type V, Class 2 Nucleases for in vivo Genome Editing

Begemann, M. B.; Gray, B. N.; January, E.; Singer, A.; Kelser, D. C.; He, Y.; Liu, H.; Guo, H.; Jordan, A.; Brutnell, T. P.; Mockler, T. C.; Oufattole, M.

10.1101/192799 — molecular biology — Posted on 2017-09-23

396 Structure and function of the intermembrane space domain of mammalian FoF1 ATP synthase

Fischer, N.; Beilsten-Edmands, V.; Chorev, D.; Hauer, F.; Jiko, C.; Shimada, S.; Shinzawa-Itoh, K.; Robinson, C.; Stark, H.; Gerle, C.

10.1101/193045 — biophysics — Posted on 2017-09-23

397 Image-based profiling can discriminate the effects of inhibitors on signaling pathways under differential ligand stimulation

Tanabe, K.; Henmi, Y.; Satake, M.

10.1101/190637 — pharmacology and toxicology — Posted on 2017-09-22

398 HyperTRIBE: Upgrading TRIBE with enhanced editing

Xu, W.; Rahman, R.; Rosbash, M.

10.1101/156828 — molecular biology — Posted on 2017-09-22

399 A near complete haplotype-phased genome of the dikaryotic wheat stripe rust fungus Puccinia striiformis f. sp. tritici reveals high inter-haplome diversity

Schwessinger, B.; Sperschneider, J.; Cuddy, W.; Miller, M.; Garnica, D.; Taylor, J.; Dodds, P.; Figueroa, M.; Robert, P.; Rathjen, J.

10.1101/192435 — microbiology — Posted on 2017-09-22

400 Paternal-age-related de novo mutations and risk for five disorders

Taylor, J.; Debost, J.-C. P. G.; Morton, S. U.; Wigdor, E. M.; Heyne, H. O.; Lal, D.; Howrigan, D. P.; Bloemendal, A.; Larsen, J. T.; Kosmicki, J. A.; Weiner, D. J.; Pediatric Cardiac Genomics Consortium, ; Homsy, J.; Seidman, J. G.; Seidman, C. E.; Agerbo, E.; McGrath, J. J.; Mortensen, P. B.; Petersen, L.; Daly, M. J.; Robinson, E. B.

10.1101/192740 — genetics — Posted on 2017-09-22

401 A persistent lack of International representation on editorial boards in environmental biology

Espin, J.; Palmas-Perez, S.; Carrasco-Rueda, F.; Riemer, K.; Allen, P.; Berkebile, N.; Hecht, K.; Kastner-Wilcox, R. K.; Nunez-Regueiro, M.; Prince, C.; Rios-Marin, M. C.; Ross, E. P.; Sangha, B.; Tyler, T.; Ungvari-Martin, J.; Villegas, M.; Cataldo, T.; Bruna, E.

10.1101/131292 — scientific communication and education — Posted on 2017-09-22

402 The burden of dengue and chikungunya in southern coastal Ecuador: Epidemiology, clinical presentation, and phylogenetics from a prospective study in Machala in 2014 and 2015

10.1101/102004 — epidemiology — Posted on 2017-09-22

403 Social-Ecological Factors And Preventive Actions Decrease The Risk Of Dengue Infection At The Household-Level: Results From A Prospective Dengue Surveillance Study In Machala, Ecuador

Kenneson, A.; Beltran-Ayala, E.; Borbor-Cordova, M. J.; Polhemus, M. E.; Ryan, S.; Endy, T. P.; Stewart-Ibarra, A.

10.1101/136382 — epidemiology — Posted on 2017-09-22

404 Bacterial Colonization Stimulates A Complex Physiological Response In The Immature Human Intestinal Epithelium

Hill, D. R.; Huang, S.; Nagy, M. S.; Yadagiri, V. K.; Fields, C.; Mukherjee, D.; Bons, B.; Dedhia, P. H.; Chin, A. M.; Tsai, Y.-H.; Thodla, S.; Schmidt, T. M.; Walk, S.; Young, V. B.; Spence, J. R.

10.1101/144568 — developmental biology — Posted on 2017-09-22

405 Done in 100 ms: Path-dependent visuomotor transformation in the human upper limb

Gu, C.; Pruszynski, J. A.; Gribble, P. L.; Corneil, B. D.

10.1101/192880 — neuroscience — Posted on 2017-09-22

406 UniProt Genomic Mapping for Deciphering Functional Effects of Missense Variants

McGarvey, P.; Nightingale, A.; Luo, J.; Huang, H.; Martin, M.-J.; Wu, C.; UniProt Consortium,

10.1101/192914 — genomics — Posted on 2017-09-22

407 Chromatin accessibility profiling uncovers genetic- and T2D disease state-associated changes in cis-regulatory element use in human islets

Khetan, S.; Kursawe, R.; Youn, A.; Lawlor, N.; Marquez, E.; Ucar, D.; Stitzel, M. L.

10.1101/192922 — genomics — Posted on 2017-09-22

408 Spillover effects of a combined water, sanitation, and handwashing intervention in rural Bangladesh: a randomized controlled trial

Benjamin-Chung, J.; Amin, N.; Ercumen, A.; Arnold, B. F.; Hubbard, A. E.; Unicomb, L.; Rahman, M.; Luby, S. P.; Colford, J. M.

10.1101/191726 — epidemiology — Posted on 2017-09-22

409 The Asian tiger mosquito, Aedes albopictus (Skuse, 1894), a vector of dengue, chikungunya and zika, reaches Portugal

Marabuto, E.; Rebelo, M. T.

10.1101/192575 — epidemiology — Posted on 2017-09-22

410 Modeling Epidemics: A Primer and Numerus Software Implementation

Getz, W. M.; Salter, R.; Muellerklein, O.; Yoon, H. S.; Tallam, K.

10.1101/191601 — epidemiology — Posted on 2017-09-22

411 Quantifying Seasonal and Diel Variation in Anopheline and Culex Human Biting Rates in Southern Ecuador

Ryan, S. J.; Lippi, C. A.; Boersch-Supan, P. H.; Heydari, N.; Silva, M.; Adrian, J.; Noblecilla, L. F.; Ayala, E. B.; Encalada, M. D.; Larsen, D. A.; Krisher, J. T.; Krisher, L.; Fregosi, L.; Stewart-Ibarra, A. M.

10.1101/192773 — epidemiology — Posted on 2017-09-22

412 NECAPs are negative regulators of the AP2 clathrin adaptor complex

Beacham, G. M.; Partlow, E. A.; Lange, J. J.; Hollopeter, G.

10.1101/192898 — cell biology — Posted on 2017-09-22

413 A high-throughput fluorescent indicator displacement assay and principal component/cluster data analysis for determination of ligand-nucleic acid structural selectivity

del Villar-Guerra, R.; Gray, R. D.; Trent, J. O.; Chaires, J.

10.1101/192849 — biophysics — Posted on 2017-09-22

414 Two rsaM homologues encode central regulatory elements modulating quorum sensing expression in Burkholderia thailandensis

Deziel, E.; Le Guillouzer, S.; Groleau, M.-C.

10.1101/192625 — microbiology — Posted on 2017-09-22

415 Integrative genomics analysis identifies ACVR1B as a candidate causal gene of emphysema distribution in non-alpha 1-antitrypsin deficient smokers

Boueiz, A.; Chase, R.; Lamb, A.; Lee, S.; Naing, Z. Z. C.; Cho, M. H.; Parker, M. M.; Hersh, C. P.; Crapo, J. D.; Stergachis, A. B.; Tal-Singer, R.; DeMeo, D. L.; Silverman, E. K.; Castaldi, P. J.

10.1101/189100 — genomics — Posted on 2017-09-22

416 Integrated analysis sheds light on evolutionary trajectories of young transcription start sites in the human genome

Li, C.; Lenhard, B.; Luscombe, N. M.

10.1101/192757 — genomics — Posted on 2017-09-22

417 Paternal-age-related de novo mutations and risk for five disorders

10.1101/192740 — genetics — Posted on 2017-09-22

418 Sodium valproate rescues expression of TRANK1 in iPSC-derived neural cells that carry a genetic variant associated with serious mental illness

Jiang, X.; Detera-Wadleigh, S. D.; Akula, N.; Mallon, B. S.; Hou, L.; Xiao, T.; Felsenfeld, G.; Gu, X.; McMahon, F. J.

10.1101/192815 — genetics — Posted on 2017-09-22

419 Eco-evolutionary dynamics and collective dispersal: implications for salmon metapopulation robustness

Yeakel, J. D.; Gibert, J. P.; Westley, P. A. H.; Moore, J. W.

10.1101/192807 — ecology — Posted on 2017-09-22

420 Combining radiomics and mathematical modeling to elucidate mechanisms of resistance to immune checkpoint blockade in non-small cell lung cancer

Saeed-Vafa, D.; Bravo, R.; Dean, J. A.; El-Kenawi, A.; Mon Pere, N.; Strobl, M.; Daniels, C.; Stringfield, O.; Damaghi, M.; Tunali, I.; Brown, L.; Curtin, L.; Nichol, D.; Peck, H.; Gillies, R. J.; Gallaher, J.

10.1101/190561 — cancer biology — Posted on 2017-09-22

421 A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae)

Schoville, S. D.; Chen, Y. H.; Andersson, M. N. N.; Benoit, J. B.; Bhandari, A.; Bowsher, J. H.; Brevik, K.; Cappelle, K.; Chen, M.-J. M.; Childers, A. K.; Childers, C.; Christiaens, O.; Clements, J.; Elpidina, E. N.; Engsontia, P.; Friedrich, M.; Garcia-Robles, I.; Goswami, C.; Grapputo, A.; Gruden, K.; Grynberg, M.; Henrissat, B.; Jennings, E. C.; Jones, J. W.; Kalsi, M.; Khan, S. A. A.; Kumar, A.; Li, F.; Lombard, V.; Ma, X.; Martynov, A.; Miller, N. J.; Mitchell, R. F.; Munoz-Torres, M.; Muszewska, A.; Oppert, B.; Palli, S. R.; Panfilio, K. A.; Pauchet, Y.; Perkin, L. C.; Petek, M.; Poelch

10.1101/192641 — genomics — Posted on 2017-09-22

422 The geometry of heterosis

Fievet, J. B.; Nidelet, T.; Dillmann, C.; de Vienne, D.

10.1101/170902 — systems biology — Posted on 2017-09-22

423 Spring flowering habit in field pennycress (Thlaspi arvense) has arisen multiple independent times

Dorn, K. M.; Johnson, E. B.; Daniels, E.; Wyse, D.; Marks, M. D.

10.1101/174920 — plant biology — Posted on 2017-09-22

424 Genetic Identification of Novel Separase regulators in Caenorhabditis elegans

Melesse, M.; Sloan, D. E.; Benthal, J. T.; Caylor, Q.; Gosine, K.; Bai, X.; Bembenek, J. N.

10.1101/191452 — genetics — Posted on 2017-09-22

425 Environmental cholera (Vibrio cholerae) dynamics in an estuarine system in southern coastal Ecuador

Ryan, S. J.; Stewart-Ibarra, A. M.; Ordonez, E.; Chu, W.; Finkelstein, J. L.; King, C. A.; Escobar, L. E.; Lupone, C.; Heras, F.; Tauzer, E.; Waggoner, E.; James, T. G.; Cardenas, W.; Polhemus, M.

10.1101/110189 — epidemiology — Posted on 2017-09-22

426 The social and spatial ecology of dengue presence and burden during an outbreak in Guayaquil, Ecuador, 2012

Lippi, C. A.; Stewart-Ibarra, A. M.; Munoz, A. G.; Borbor-Cordova, M. J.; Mejia, R.; Rivero, K.; Castillo, K.; Cardenas, W. B.; Ryan, S. J.

10.1101/112185 — epidemiology — Posted on 2017-09-22

427 Social behavior in bees influences the abundance of Sodalis (Enterobacteriaceae) symbionts

Rubin, B. E.; Sanders, J. G.; Turner, K. M.; Pierce, N. E.; Kocher, S. D.

10.1101/192617 — microbiology — Posted on 2017-09-22

428 A high throughput screen for active human transposable elements

Kvikstad, E. M.; Piazza, P.; Taylor, J. C.; Lunter, G.

10.1101/192708 — genomics — Posted on 2017-09-22

429 Mechanisms of improved specificity of engineered Cas9s revealed by single molecule analysis

Singh, D.; Wang, Y.; Mallon, J.; Yang, O.; Fei, J.; Poddar, A.; Ceylan, D.; Bailey, S.; Ha, T.

10.1101/192724 — biophysics — Posted on 2017-09-22

430 Compact Standalone Platform for Neural Recording with Real-Time Spike Sorting and Data Logging

Luan, S.; Williams, I.; Maslik, M.; Liu, Y.; de Carvalho, F.; Jackson, A.; Quian Quiroga, R.; Constandinou, T. G.

10.1101/186627 — bioengineering — Posted on 2017-09-22

431 Interaction Between Host MicroRNAs and the Gut Microbiota in Colorectal Cancer

Yuan, C.; Burns, M.; Subramanian, S.; Blekhman, R.

10.1101/192401 — systems biology — Posted on 2017-09-22

432 Promoter architecture determines co-translational regulation of mRNA

Espinar Calvo, M. L.; Schikora Tamarit, M. A.; Domingo Espinos, J.; Carey, L. B.

10.1101/192195 — systems biology — Posted on 2017-09-22

433 Cold-hearted bats: Cardiac function and metabolism of small bats during torpor at subzero temperatures

Currie, S. E.; Stawski, C.; Geiser, F.

10.1101/192526 — physiology — Posted on 2017-09-22

434 Image-based profiling can discriminate the effects of inhibitors on signaling pathways under differential ligand stimulation

Tanabe, K.; Henmi, Y.; Satake, M.

10.1101/190637 — pharmacology and toxicology — Posted on 2017-09-22

435 Effects of tDCS Dosage on Working Memory in Healthy Participants

Nikolin, S.; Martin, D.; Loo, C. K.; Boonstra, T. W.

10.1101/192419 — neuroscience — Posted on 2017-09-22

436 Auditory brainstem responses to continuous natural speech in human listeners

Maddox, R. K.; Lee, A. K. C.

10.1101/192070 — neuroscience — Posted on 2017-09-22

437 Stimulus familiarity and expectation jointly modulate neural activity in the visual ventral stream

Manahova, M. E.; Mostert, P.; Kok, P.; Schoffelen, J.-M.; de Lange, F. P.

10.1101/192518 — neuroscience — Posted on 2017-09-22

438 Dynamical modulation of theta-gamma coupling during REM sleep

Bandarabadi, M.; Boyce, R.; Herrera, C. G.; Bassetti, C.; Williams, S.; Schindler, K.; Adamantidis, A.

10.1101/169656 — neuroscience — Posted on 2017-09-22

439 Dysconnection of right parietal and frontal cortex in neglect syndrome

Dietz, M. J.; Nielsen, J. F.; Roepstorff, A.; Garrido, M. I.

10.1101/192583 — neuroscience — Posted on 2017-09-22

440 A near complete haplotype-phased genome of the dikaryotic wheat stripe rust fungus Puccinia striiformis f. sp. tritici reveals high inter-haplome diversity

Schwessinger, B.; Sperschneider, J.; Cuddy, W.; Miller, M.; Garnica, D.; Taylor, J.; Doods, P.; Park, R.; Figueroa, M.; Rathjen, J.

10.1101/192435 — microbiology — Posted on 2017-09-22

441 The genomic landscape at a late stage of stickleback speciation: high genomic divergence interspersed by small localized regions of introgression

Kitano, J.; Ravinet, M.; Yoshida, K.; Toyoda, A.; Fujiyama, A.; Shigenobu, S.

10.1101/190629 — evolutionary biology — Posted on 2017-09-22

442 R2ucare: An R package to perform goodness-of-fit tests for capture-recapture models

Gimenez, O.; Lebreton, J.-D.; Choquet, R.; Pradel, R.

10.1101/192468 — ecology — Posted on 2017-09-22

443 Actin enhances ER-mitochondrial calcium transfer and IMM constriction during mitochondrial division

Chakrabarti, R.; Ji, W.-K.; Stan, R. V.; de Juan-Sanz, J.; Ryan, T. A.; Higgs, H. N.

10.1101/192674 — cell biology — Posted on 2017-09-22

444 Drosophila larval brain neoplasms present tumour-type dependent genome instability

Rossi, F.; Stephan-Otto Attolini, C.; Mosquera, J. L.; Gonzalez, C.

10.1101/192492 — cancer biology — Posted on 2017-09-22

445 Population-level distribution and putative immunogenicity of cancer neoepitopes

Wood, M. A.; Paralkar, M.; Paralkar, M. P.; Nguyen, A.; Struck, A. J.; Ellrott, K.; Margolin, A.; Nellore, A.; Thompson, R. F.

10.1101/192716 — cancer biology — Posted on 2017-09-22

446 ANTENNA, a Multi-Rank, Multi-Layered Recommender System for Inferring Reliable Drug-Gene-Disease Associations: Repurposing Diazoxide as a Targeted Anti-Cancer Therapy

Wang, A.; Lim, H.; Cheng, S.-Y.; Xie, L.

10.1101/192385 — bioinformatics — Posted on 2017-09-22

447 Deep-learning based hologram classification for molecular diagnostics

Kim, S.-J.; Zhao, B.; Im, H.; Min, J.; Choi, N.; Castro, C. M.; Weissleder, R.; Lee, H.; Lee, K.

10.1101/192559 — bioengineering — Posted on 2017-09-22

448 Molecular basis for the maintenance of lipid asymmetry in the outer membrane of Escherichia coli

Yeow, J.; Tan, K. W.; Holdbrook, D. A.; Chong, Z.-S.; Marzinek, J. K.; Bond, P. J.; Chng, S.-S.

10.1101/192500 — biochemistry — Posted on 2017-09-22

449 Aging Of Antiviral CD8+ Memory T Cells Fosters Increased Survival, Metabolic Adaptations And Lymphoid Tissue Homing

Davenport, B.; Eberlein, J.; van der Heide, V.; Jhun, K.; Nguyen, T.; Victorino, F.; Trotta, A.; Chipuk, J.; Yi, Z.; Zhang, W.; Clambey, E.; Scott, D. K.; Homann, D.

10.1101/191932 — immunology — Posted on 2017-09-22

450 Food environments and obesity: cannot see the fat for the restaurants?

Speakman, J.; Mazidi, M.

10.1101/188177 — epidemiology — Posted on 2017-09-22

451 The geometry of heterosis

Fievet, J. B.; Nidelet, T.; Dillmann, C.; de Vienne, D.

10.1101/170902 — systems biology — Posted on 2017-09-22

452 Enabling Precision Medicine via standard communication of NGS provenance, analysis, and results

Alterovitz, G.; Dean, D. A.; Goble, C.; Crusoe, M. R.; Soiland-Reyes, S.; Bell, A.; Hayes, A.; King, C. H. S.; Johanson, E.; Thompson, E. E.; Donaldson, E.; Tsang, H. S.; Goecks, J.; Almeida, J. S.; Guo, L.; Walderhaug, M.; Walsh, P.; Kahsay, R.; Bloom, T.; Lai, Y.; Simonyan, V.; Mazumder, R.

10.1101/191783 — scientific communication and education — Posted on 2017-09-22

453 Disparate patterns of thermal adaptation between life stages in temperate vs. tropical Drosophila melanogaster

Lockwood, B. L.; Gupta, T.; Scavotto, R.

10.1101/120360 — evolutionary biology — Posted on 2017-09-22

454 Analysis of multistage in vitro fertilization data with mixed multilevel outcomes using joint modelling approaches

Wilkinson, J.; Vail, A.; Roberts, S. A.

10.1101/173534 — epidemiology — Posted on 2017-09-22

455 Shaping Epigenetic Memory via Genomic Bookmarking

Michieletto, D.; Chiang, M.; Coli, D.; Papantonis, A.; Orlandini, E.; Cook, P. R.; Marenduzzo, D.

10.1101/184598 — biophysics — Posted on 2017-09-22

456 HIV disrupts CD34+ progenitors involved in T-cell differentiation

Tsukamoto, T.

10.1101/142539 — microbiology — Posted on 2017-09-22

457 Automated collection of pathogen-specific diagnostic data for real-time syndromic epidemiological studies

Meyers, L.; Ginocchio, C. C.; Faucett, A. N.; Nolte, F. S.; Gesteland, P. H.; Leber, A.; Janowiak, D.; Donovan, V.; Dien Bard, J.; Spitzer, S.; Stellrecht, K. A.; Salimnia, H.; Selvarangan, R.; Juretschko, S.; Daly, J. A.; Wallentine, J. C.; Lindsey, K.; Moore, F.; Reed, S. L.; Aguero-Rosenfeld, M.; Fey, P. D.; Storch, G. A.; Melnick, S. J.; Robinson, C. C.; Meredith, J. F.; Cook, C. V.; Nelson, R. K.; Jones, J. D.; Scarpino, S. V.; Althouse, B. M.; Ririe, K. M.; Malin, B. A.; Poritz, M. A.

10.1101/157156 — epidemiology — Posted on 2017-09-22

458 Sensitive and robust assessment of ChIP-seq read distribution using a strand-shift profile

Nakato, R.; Shirahige, K.

10.1101/165050 — bioinformatics — Posted on 2017-09-22

459 Deep transcriptome annotation suggests that small and large proteins encoded in the same genes often cooperate

Samandi, S.; Roy, A. V.; Delcourt, V.; Lucier, J.-F.; Gagnon, J.; Beaudoin, M. C.; Vanderperre, B.; Breton, M.-A.; Jacques, J.-F.; Brunelle, M.; Motard, J.; Gagnon-Arsenault, I.; Fournier, I.; Ouangraoua, A.; Hunting, D. J.; Cohen, A. A.; Landry, C. R.; Scott, M. S.; Roucou, X.

10.1101/142992 — biochemistry — Posted on 2017-09-22

460 Stage-specific ISG expression reveals functional convergence of type I and II IFNs in SIV infection

Echebli, N.; Tchitchek, N.; Dupuy, S.; Bruel, T.; Pereira Bittencourt Passaes, C.; Bosquet, N.; Le Grand, R.; Bourgeois, C.; Favier, B.; Cheynier, R.; Lambotte, O.; Vaslin, B.

10.1101/192021 — immunology — Posted on 2017-09-22

461 The neurobiology of agrammatic sentence comprehension: a lesion study

Rogalsky, C.; LaCroix, A. N.; Chen, K.-H.; Anderson, S. W.; Damasio, H.; Love, T.; Hickok, G.

10.1101/192245 — neuroscience — Posted on 2017-09-22

462 Single Cell RNA Sequencing of stem cell-derived retinal ganglion cells.

Daniszewski, M.; Senabouth, A.; Nguyen, Q.; Crombie, D. E.; Lukowski, S. W.; Kulkarni, T.; Zack, D. J.; Pebay, A.; Powell, J. E.; Hewitt, A.

10.1101/191395 — genomics — Posted on 2017-09-22

463 Natural selection on plasticity of thermal traits in a highly seasonal environment

Bacigalupe, L. D.; Barria, A. M.; Gonzalez-Mendez, A.; Ruiz-Aravena, M.; Gaitan-Espitia, J. D.; Trinder, M.; Sinervo, B.

10.1101/191825 — evolutionary biology — Posted on 2017-09-22

464 Propagating actomyosin-generated force to intercellular junction

Tang, V. W.

10.1101/191965 — cell biology — Posted on 2017-09-22

465 Compact Standalone Platform for Neural Recording with Real-Time Spike Sorting and Data Logging

Luan, S.; Williams, I.; Maslik, M.; Liu, Y.; de Carvalho, F.; Jackson, A.; Quian Quiroga, R.; Constandinou, T. G.

10.1101/186627 — bioengineering — Posted on 2017-09-22

466 MICCS: A Fully Programmable Multipurpose Integrated Cell Culture System

Kassis, T.; Perez, P. M.; Yang, C. J. W.; Soenksen, L. R.; Trumper, D. L.; Griffith, L. G.

10.1101/192047 — bioengineering — Posted on 2017-09-22

467 Selection bias in instrumental variable analyses

Hughes, R. A.; Davies, N. M.; Davey Smith, G.; Tilling, K.

10.1101/192237 — epidemiology — Posted on 2017-09-22

468 The hidden spatial dimension of alpha: 10 Hz perceptual echoes propagate as periodic travelling waves in the human brain.

Lozano-Soldevilla, D.; VanRullen, R.

10.1101/190595 — neuroscience — Posted on 2017-09-21

469 An "invisible" ubiquitin conformation is required for efficient phosphorylation by PINK1

Gladkova, C.; Schubert, A. F.; Wagstaff, J. L.; Pruneda, J. N.; Freund, S. M. V.; Komander, D.

10.1101/189027 — molecular biology — Posted on 2017-09-21

470 Conventional and hyperspectral time-series imaging of maize lines widely used in field trials

Liang, Z.; Pandey, P.; Stoerger, V.; Xu, Y.; Qiu, Y.; Ge, Y.; Schnable, J. C.

10.1101/169045 — plant biology — Posted on 2017-09-21

471 High Ambient Temperature Facilitates The Acquisition Of 3,4-Methylenedioxymethamphetamine (MDMA) Self-Administration

Aarde, S. M.; Huang, P.-K.; Taffe, M. A.

10.1101/123828 — pharmacology and toxicology — Posted on 2017-09-21

472 Working Memory Load Modulates Neuronal Coupling

Pinotsis, D. A.; Buschman, T. J.; Miller, E. K.

10.1101/192336 — neuroscience — Posted on 2017-09-21

473 A random dot kinematogram for online visual psychophysics

Rajananda, S.; Lau, H.; Odegaard, B.

10.1101/192377 — neuroscience — Posted on 2017-09-21

474 Salient Experiences are Represented by Unique Transcriptional Signatures in the Brain

Mukherjee, D.; Ignatowska-Jankowska, B. M.; Itskovits, E.; Gonzales, B. J.; Turm, H.; Izakson, L.; Haritan, D.; Bleistein, N.; Cohen, C.; Amit, I.; Shay, T.; Grueter, B.; Zaslaver, A.; Citri, A.

10.1101/192278 — neuroscience — Posted on 2017-09-21

475 A Robust Targeted Sequencing Approach For Low Input And Variable Quality DNA From Clinical Samples

So, A.; Vilborg, A.; Bouhlal, Y.; Koehler, R.; Grimes, S.; Pouliot, Y.; Mendoza, D.; Goodsaid, F.; Lucero, M.; De La Vega, F. M.; Ji, H. P.

10.1101/123117 — genomics — Posted on 2017-09-21

476 The Parasite Extinction Assessment & Red List: an open-source, online biodiversity database for neglected symbionts

Carlson, C. J.; Muellerklein, O. C.; Phillips, A. J.; Burgio, K. R.; Castaldo, G.; Cizauskas, C. A.; Cumming, G. S.; Dallas, T. A.; Dona, J.; Harris, N.; Jovani, R.; Miao, Z.; Proctor, H.; Yoon, H. S.; Getz, W. M.

10.1101/192351 — ecology — Posted on 2017-09-21

477 A mechanistic perspective of ecological networks highlights the contribution of alternative interaction strategies

Kiziridis, D.; Boddy, L.; Eastwood, D. C.; Yuan, C.; Fowler, M. S.

10.1101/192260 — ecology — Posted on 2017-09-21

478 Transfer Learning from Markov models leads to efficient sampling of related systems

Sultan, M. M.; Pande, V.

10.1101/158592 — biophysics — Posted on 2017-09-21

479 A pan-cancer landscape of interactions between solid tumors and infiltrating immune cell populations

Tamborero, D.; Rubio-Perez, C.; Muinos, F.; Sabarinathan, R.; Piulats, J. M. M.; Muntasell, A.; Dientsmann, R.; Lopez-Bigas, N.; Gonzalez-Perez, A.

10.1101/192286 — bioinformatics — Posted on 2017-09-21

480 hichipper: A preprocessing pipeline for assessing library quality and DNA loops from HiChIP data

Lareau, C.; Aryee, M.

10.1101/192302 — bioinformatics — Posted on 2017-09-21

481 Optimizing scoring function of dynamic programming of pairwise profile alignment using derivative free neural network

Yamada, K. D.

10.1101/182493 — bioinformatics — Posted on 2017-09-21

482 Spatial modeling of the membrane-cytosolic interface in protein kinase signal transduction

Giese, W.; Milicic, G.; Schröder, A.; Klipp, E.

10.1101/191940 — systems biology — Posted on 2017-09-21

483 Quantitative PCR assays for detection of five Alaskan fish species: Lota lota, Salvelinus alpinus, Salvelinus malma, Thymallus arcticus, and Cottus cognatus from environmental DNA

Rodgers, T. W.; Olson, J. R.; Klobucar, S. L.; Mock, K. E.

10.1101/116053 — zoology — Posted on 2017-09-21

484 Distinguishing among modes of convergent adaptation using population genomic data

Lee, K. M.; Coop, G.

10.1101/119578 — evolutionary biology — Posted on 2017-09-21

485 Streamlined histone-based fluorescence lifetime imaging microscopy reveals ATM regulation of chromatin compaction

Sherrard, A.; Bishop, P.; Panagi, M.; Villagomez, M. B.; Alibhai, D.; Kaidi, A.

10.1101/191890 — cell biology — Posted on 2017-09-21

486 gene2drug: a Computational Tool for Pathway-based Rational Drug Repositioning

Napolitano, F.; Carrella, D.; Mandriani, B.; Pisonero, S.; Sirci, F.; Medina, D.; Brunetti-Pierri, N.; di Bernardo, D.

10.1101/192005 — bioinformatics — Posted on 2017-09-21

487 Grip force adjustments reflect prediction of dynamic consequences in varying gravitoinertial fields

White, O.; Thonnard, J.-L.; Lefevre, P.; Hermsdorfer, J.

10.1101/190983 — neuroscience — Posted on 2017-09-21

488 Rictor/TORC2 mediates gut-to-brain signaling in the regulation of phenotypic plasticity in C. elegans

O'Donnell, M.; Chao, P.-H.; Kammenga, J.; Sengupta, P.

10.1101/189613 — neuroscience — Posted on 2017-09-21

489 Actin assembly-inducing protein ActA promotes FcγRIa-mediated Listeria internalization

Perelman, S. S.; Abrams, M. E.; Alto, N. M.

10.1101/175117 — microbiology — Posted on 2017-09-21

490 The Gram-positive model organism Bacillus subtilis does not form detectable cardiolipin-specific lipid domains

Pogmore, A.-R.; Seistrup, K. H.; Strahl, H.

10.1101/190306 — microbiology — Posted on 2017-09-21

491 Maternal depression and child behaviours: sex-dependent mediation by glucocorticoid receptor gene methylation in a longitudinal study from pregnancy to age 5 years

Hill, J.; Pickles, A.; Wright, N.; Quinn, J. P.; Murgatroyd, C.; Sharp, H.

10.1101/187351 — genetics — Posted on 2017-09-21

492 De novo damaging coding mutations are strongly associated with obsessive-compulsive disorder and overlap with autism

Cappi, C.; Oliphant, M. E.; Peter, Z.; Zai, G.; Sullivan, C. A.; Gupta, A. R.; Hoffman, E. J.; Virdee, M.; Willsey, A. J.; Shavitt, R. G.; Miguel, E. C.; Kennedy, J. L.; Richter, M. A.; Fernandez, T. V.

10.1101/127712 — genetics — Posted on 2017-09-21

493 An Interpretable Framework for Clustering Single-Cell RNA-Seq Datasets

Zhang, J. M.; Fan, J.; Fan, H. C.; Rosenfeld, D.; Tse, D. N.

10.1101/191254 — bioinformatics — Posted on 2017-09-21

494 A duplex MIPs-based biological-computational cell lineage discovery platform

Tao, L.; Raz, O.; Marx, Z.; Biezuner, T.; Amir, S.; Milo, L.; Adar, R.; Onn, A.; Chapal-Ilani, N.; Berman, V.; Levy, R.; Oron, B.; Shapiro, E.

10.1101/191296 — systems biology — Posted on 2017-09-21

495 Distributed and dynamic intracellular organization of extracellular information

Granados, A. A.; Pietsch, J. M.; Cepeda-Humerez, S.; Tkacik, G.; Swain, P. S.

10.1101/192039 — systems biology — Posted on 2017-09-21

496 Enabling Precision Medicine via standard communication of NGS provenance, analysis, and results

Alterovitz, G.; Dean, D. A.; Goble, C.; Crusoe, M. R.; Soiland-Reyes, S.; Bell, A.; Hayes, A.; King, C. H. H.; Johanson, E.; Thompson, E. E.; Donaldson, E.; Tsang, H. S.; Goecks, J.; Almeida, J. S.; Guo, L.; Walderhaug, M.; Walsh, P.; Kahsay, R.; Bloom, T.; Lai, Y.; Simonyan, V.; Mazumder, R.

10.1101/191783 — scientific communication and education — Posted on 2017-09-21

497 Modeling the schizophrenias: subunit-specific NMDAR antagonism dissociates oscillatory signatures of frontal hypofunction and hippocampal hyperfunction

Pittman-Polletta, B. R.; Hu, K.; Kocsis, B.

10.1101/191882 — neuroscience — Posted on 2017-09-21

498 Brief optogenetic inhibition of rat lateral or ventrolateral periaqueductal gray augments the acquisition of Pavlovian fear conditioning.

Assareh, N.; Bagley, E.; Carrive, P.; McNally, G. P.

10.1101/191841 — neuroscience — Posted on 2017-09-21

499 Changes in alpha activity reveal that social opinion modulates attention allocation during face processing

Heyselaar, E.; Mazaheri, A.; Hagoort, P.; Segaert, K.

10.1101/191916 — neuroscience — Posted on 2017-09-21

500 Untuned But Not Irrelevant: The Role of Untuned Neurons In Sensory Information Coding

Zylberberg, J.

10.1101/134379 — neuroscience — Posted on 2017-09-21

501 Clofazimine targets essential nucleoid associated protein, mycobacterial integration host factor (mIHF), in Mycobacterium tuberculosis

Shi, W.; Zhang, S.; Feng, J.; Cui, P.; Zhang, W.; Zhang, Y.

10.1101/192161 — microbiology — Posted on 2017-09-21

502 A novel strategy to express different antigens from one modified vaccinia Ankara vaccine vector

Lauer, K. B.; Mc Kenzie, E. A.; Hall, Y.; Gowda, C. P. C.; Klapper, P.; Vallely, P. J.; Borrow, R.; Carroll, M. W.; Blanchard, T. J.

10.1101/191924 — immunology — Posted on 2017-09-21

503 Pinaceae show elevated rates of gene duplication and gene loss that are robust to incomplete gene annotation

Casola, C.; Koralewski, T. E.

10.1101/192203 — genomics — Posted on 2017-09-21

504 Quantitating Translational Control: mRNA Abundance-Dependent and Independent Contributions and the mRNA Sequences That Specify Them

Li, J. J.; Chew, G.-L.; Biggin, M. D.

10.1101/116913 — genomics — Posted on 2017-09-21

505 Neolithization of North Africa involved the migration of people from both the Levant and Europe

Fregel, R.; Mendez, F. L.; Bokbot, Y.; Martin-Socas, D.; Camalich-Massieu, M. D.; Avila-Arcos, M. C.; Underhill, P. A.; Shapiro, B.; Wojcik, G. L.; Rasmussen, M.; Soares, A. E. R.; Kapp, J.; Sockell, A.; Rodriguez-Santos, F. J.; Mikdad, A.; Santana, J.; Trujillo-Mederos, A.; Bustamante, C. D.

10.1101/191569 — genetics — Posted on 2017-09-21

506 Long-lived rodents reveal signatures of positive selection in genes associated with lifespan and eusociality

Sahm, A.; Bens, M.; Szafranski, K.; Holtze, S.; Groth, M.; Goerlach, M.; Calkhoven, C.; Mueller, C.; Schwab, M.; Kestler, H. A.; Cellerino, A.; Burda, H.; Hildebrandt, T.; Dammann, P.; Platzer, M.

10.1101/191999 — evolutionary biology — Posted on 2017-09-21

507 BipartGraph: An interactive application to plotbipartite ecological networks

Garcia-Algarra, J.; Pastor, J. M. M.; Mouronte, M. L.; Galeano, J.

10.1101/192013 — ecology — Posted on 2017-09-21

508 The kinases PIG-1 and PAR-1 act in redundant pathways to regulate asymmetric division in the EMS blastomere of C. elegans.

Liro, M. J.; Morton, D. G.; Rose, L. S.

10.1101/191866 — developmental biology — Posted on 2017-09-21

509 DNAJB1-PRKACA fusion kinase drives tumorigenesis and interacts with β-catenin and the liver regenerative response.

Kastenhuber, E. R.; Lalazar, G.; Tschaharganeh, D. F.; Houlihan, S. L.; Baslan, T.; Chen, C.-C.; Requena, D.; Tian, S.; Bosbach, B.; Wilkinson, J. E.; Simon, S. M.; Lowe, S. W.

10.1101/192104 — cancer biology — Posted on 2017-09-21

510 gene2drug: a Computational Tool for Pathway-based Rational Drug Repositioning

di Bernardo, D.; Napolitano, F.; Carrella, D.; Mandriani, B.; Pisonero, S.; Sirci, F.; Medina, D.; Brunetti-Pierri, N.

10.1101/192005 — bioinformatics — Posted on 2017-09-21

511 Updating the 97% identity threshold for 16S ribosomal RNA OTUs

Edgar, R. C.

10.1101/192211 — bioinformatics — Posted on 2017-09-21

512 Prediction of residue-residue contacts in CASP12 targets from its predicted tertiary structures

Agrawal, P.; Singh, S.; Nagpal, G.; Sethi, D.; Raghava, G. P. S.

10.1101/192120 — bioinformatics — Posted on 2017-09-21

513 A space and time-efficient index for the compacted colored de Bruijn graph

Almodaresi, F.; Sarkar, H.; Patro, R.

10.1101/191874 — bioinformatics — Posted on 2017-09-21

514 vU-net: accurate cell edge segmentation in time-lapse fluorescence live cell images based on convolutional neural network

Wang, C.; Zhang, X.; Chen, Y.; Lee, K.

10.1101/191858 — bioinformatics — Posted on 2017-09-21

515 Cortical Connectivity In A Macaque Model Of Congenital Blindness

Magrou, L.; Barone, P.; Markov, N. T.; Killackey, H.; Giroud, P.; Berland, M.; Knoblauch, K.; Dehay, C.; Kennedy, H.

10.1101/188888 — neuroscience — Posted on 2017-09-21

516 Trendy: Segmented regression analysis of expression dynamics for high-throughput ordered profiling experiments

Bacher, R.; Leng, N.; Chu, L.-F.; Thomson, J.; Kendziorski, C.; Stewart, R.

10.1101/185413 — genomics — Posted on 2017-09-21

517 Post-fire Quercus alba fitness in a stressed plant community

Milla, K.

10.1101/189829 — ecology — Posted on 2017-09-21

518 Role of midbody remnant in meiosis II creating tethered polar bodies

McDougall, A.; Hebras, C.; Pruliere, G.; Burgess, D.; Costache, V.; Dumollard, R.; Chenevert, J.

10.1101/191981 — developmental biology — Posted on 2017-09-21

519 Structure-kinetic-thermodynamic relationships for peptide secondary structure formation identified from transition network properties

Rudzinski, J. F.; Bereau, T.

10.1101/183053 — biophysics — Posted on 2017-09-21

520 Phasor based single-molecule localization microscopy in 3D (pSMLM-3D): an algorithm for MHz localization rates using standard CPUs

Martens, K.; Bader, A. N.; Baas, S.; Rieger, B.; Hohlbein, J.

10.1101/191957 — biophysics — Posted on 2017-09-21

521 Stochastic Resonance Mediates the State-Dependent Effect of Periodic Stimulation on Cortical Alpha Oscillations

Lefebvre, J.; Hutt, A.; Frohlich, F.

10.1101/191577 — bioinformatics — Posted on 2017-09-21

522 Sensorimotor Processing In The Basal Ganglia Leads To Transient Beta Oscillations During Behavior

Mirzaei, A.; Kumar, A.; Leventhal, D.; Mallet, N.; Aertsen, A.; Berke, J.; Schmidt, R.

10.1101/136879 — neuroscience — Posted on 2017-09-21

523 Pseudomonas aeruginosa type IV minor pilins and PilY1 regulate virulence by modulating FimS-AlgR activity

Marko, V. A.; Kilmury, S. L. N.; MacNeil, L. T.; Burrows, L. L.

10.1101/192062 — microbiology — Posted on 2017-09-21

524 USA300 MRSA lineages persist on multiple body sites following infection

Read, T. D.; Petit, R. A.; Yin, Z.; Montgomery, T.; McNulty, M. C.; David, M. Z.

10.1101/192096 — microbiology — Posted on 2017-09-21

525 Conserved microRNA targeting reveals preexisting gene dosage sensitivities that shaped amniote sex chromosome evolution

Naqvi, S.; Bellott, D. W.; Lin, K. S.; Page, D. C.

10.1101/118729 — genetics — Posted on 2017-09-21

526 A critical re-evaluation of multilocus sequence typing (MLST) efforts in Wolbachia

Bleidorn, C.; Gerth, M.

10.1101/133710 — evolutionary biology — Posted on 2017-09-21

527 Comparative analysis of 24 chloroplast genomes yields highly informative genetic markers for the Brazil nut family (Lecythidaceae)

Thomson, A. M.; Vargas, O. M.; Dick, C. W.

10.1101/192112 — evolutionary biology — Posted on 2017-09-21

528 Spatial and temporal translocation of PKCα in single endothelial cell in response to focal mechanical stimulus

Arai, M.; Sera, T.; Hasegawa, T.; Kudo, S.

10.1101/191833 — cell biology — Posted on 2017-09-21

529 Postmitotic Nuclear Pore Assembly Proceeds By Radial Dilation Of Small ER Membrane Openings

Otsuka, S.; Steyer, A. M.; Schorb, M.; Heriche, J.-K.; Hossain, M. J.; Sethi, S.; Kueblbeck, M.; Schwab, Y.; Beck, M.; Ellenberg, J.

10.1101/141150 — cell biology — Posted on 2017-09-21

530 The whole diagram of the discovered host immunological pathways

Hu, W.

10.1101/006965 — immunology — Posted on 2017-09-21

531 ER-positive breast cancer cells are poised for RET-mediated endocrine resistance

Horibata, S.; Rice, E. J.; Zheng, H.; Anguish, L. J.; Coonrod, S.; Danko, C. G.

10.1101/098848 — cancer biology — Posted on 2017-09-21

532 Subfunctionalization versus neofunctionalization after whole-genome duplication

Sandve, S. R.; Rohlfs, R. V.; Hvidsten, T. R.

10.1101/190090 — evolutionary biology — Posted on 2017-09-21

533 A Dynamic Bayesian Observer Model Reveals Origins of Bias in Visual Path Integration

Lakshminarasimhan, K. J.; Petsalis, M.; Park, H.; DeAngelis, G. C.; Pitkow, X.; Angelaki, D. E.

10.1101/191817 — neuroscience — Posted on 2017-09-20

534 BioSankey: Visualizing microbial communities and gene expression data over time

Platzer, A.; Polzin, J.; Han, P. P.; Rembart, K.; Nussbaumer, T.

10.1101/191767 — bioinformatics — Posted on 2017-09-20

535 Impaired hippocampal representation of place in the Fmr1-knockout mouse model of Fragile X syndrome

Arbab, T.; Pennartz, C. M.; Battaglia, F. P.

10.1101/191775 — animal behavior and cognition — Posted on 2017-09-20

536 Memory entrainment by visually evoked theta-gamma coupling in the human brain

Köster, M.; Martens, U.; Gruber, T.

10.1101/191189 — neuroscience — Posted on 2017-09-20

537 A simplified electronic circuit for combined single-cell stimulation and recording using loose cell-attached electrodes

Strowbridge, B. W.; Pressler, R. T.

10.1101/191718 — neuroscience — Posted on 2017-09-20

538 Catecholaminergic modulation of the avoidance of cognitive control

Frobose, M. I.; Swart, J. C.; Cook, J. L.; Geurts, D. E.; den Ouden, H. E.; Cools, R.

10.1101/191015 — neuroscience — Posted on 2017-09-20

539 Acute Social Stress Engages Synergistic Activity of Stress Mediators in the VTA to Promote Pavlovian Reward Learning

Morikawa, H.; Tovar-Diaz, J.; Pomrenze, M. B.; Pahlavan, B.; Kan, R.; Drew, M.

10.1101/191148 — neuroscience — Posted on 2017-09-20

540 Experience-dependent neuroplasticity of the developing hypothalamus: integrative epigenomic approaches

Vogel Ciernia, A.; Laufer, B. I.; Dunaway, K. W.; Mordaunt, C. E.; Coulson, R. L.; Totah, T. S.; Stolzenberg, D. S.; Frahm, J. C.; Singh-Taylor, A.; Baram, T. Z.; LaSalle, J. M.; Yasui, D. H.

10.1101/191791 — neuroscience — Posted on 2017-09-20

541 Tolerance of chronic HDACi-administration used for treatment of neurological and visceral disease including lung pathogenesis.

Alam, M. S.; Cooper, B.; Haldar, K.

10.1101/191635 — neuroscience — Posted on 2017-09-20

542 A Sequel to Sanger: Amplicon Sequencing That Scales

Hebert, P. D.; Braukmann, T. W.; Prosser, S. W.; Ratnasingham, S.; deWaard, J. R.; Ivanova, N. V.; Janzen, D. H.; Hallwachs, W.; Naik, S.; Sones, J. E.; Zakharov, E. V.

10.1101/191619 — molecular biology — Posted on 2017-09-20

543 Identification of environmental and genetic factors important for Cryptococcus neoformans titan cell formation using new in vitro inducing conditions

Hommel, B.; Mukaremera, L.; Cordero, R. J. B.; Desjardins, C. A.; Sturny-Leclere, A.; Perfect, J.; Fraser, J. A.; Casadevall, A.; Cuomo, C. A.; Dromer, F.; Nielsen, K.; Alanio, A.

10.1101/191668 — microbiology — Posted on 2017-09-20

544 Pervasive epistasis in cell proliferation pathways modulates neurodevelopmental defects of autism-associated 16p11.2 deletion

Iyer, J.; Singh, M. D.; Jensen, M.; Patel, P.; Pizzo, L.; Huber, E.; Koerselman, H.; Weiner, A. T.; Lepanto, P.; Vadodaria, K.; Kubina, A.; Wang, Q.; Talbert, A.; Yennawar, S.; Badano, J.; Manak, J. R.; Rolls, M. M.; Krishnan, A.; Girirajan, S.

10.1101/185355 — genomics — Posted on 2017-09-20

545 Genetic drivers of repeat expansion disorders localize to 3-D chromatin domain boundaries

Sun, J.; Zhou, L.; Emerson, D. J.; Gilgenast, T. G.; Titus, K.; Beagan, J. A.; Phillips-Cremins, J. E.

10.1101/191213 — genomics — Posted on 2017-09-20

546 Sweeping genomic remodeling through repeated selection of alternatively adapted haplotypes occurs in the first decades after marine stickleback colonize new freshwater ponds

Bassham, S.; Catchen, J.; Lescak, E.; von Hippel, F. A.; Cresko, W. A.

10.1101/191627 — evolutionary biology — Posted on 2017-09-20

547 The whole-genome panorama of cancer drivers

Sabarinathan, R.; Pich, O.; Martincorena, I.; Rubio-Perez, C.; Juul, M.; Wala, J.; Schumacher, S.; Shapira, O.; Sidiropoulos, N.; Waszak, S.; Tamborero, D.; Mularoni, L.; Rheinbay, E.; Hornshoj, H.; Deu-Pons, J.; Muinos, F.; Bertl, J.; Guo, Q.; Weischenfeldt, J.; Korbel, J. O.; Getz, G.; Campbell, P. J.; Pedersen, J. S.; Beroukhim, R.; Perez-Gonzalez, A.; Lopez-Bigas, N.; PCAWG Drivers and Functional Interpretation Group, ; ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Net,

10.1101/190330 — cancer biology — Posted on 2017-09-20

548 Single-molecule diffusometry reveals the nucleotide-dependent oligomerization pathways of Nicotiana tabacum Rubisco activase

Wang, Q.; Serban, A. J.; Wachter, R. M.; Moerner, W. E.

10.1101/191742 — biophysics — Posted on 2017-09-20

549 MuClone: Somatic mutation detection and classification through probabilistic integration of clonal population structure

Dorri, F.; Jewell, S.; Bouchard-Cote, A.; Shah, S.

10.1101/191759 — bioinformatics — Posted on 2017-09-20

550 Neuronal rhythms orchestrate cell assembles to distinguish perceptual categories

Moazami Goudarzi, M.; Cromer, J.; Roy, J.; Miller, E. K.

10.1101/191247 — animal behavior and cognition — Posted on 2017-09-20

551 Notes On Synthesis Of Perdeutero-5-13C,5,5,5-Trifluoroisoleucine VI

Naugler, D.; Prosser, R. S.

10.1101/140681 — molecular biology — Posted on 2017-09-20

552 Binge-like Acquisition of α-pyrrolidinopentiophenone (α-PVP) Self-Administration in Female Rats

Javadi-Paydar, M.; Grant, Y.; Vandewater, S. A.; Creehan, K. M.; Nguyen, J. D.; Dickerson, T. J.; Taffe, M. A.

10.1101/191155 — neuroscience — Posted on 2017-09-20

553 How Sample Size Influences The Replicability Of Task-Based fMRI

Turner, B. O.; Paul, E. J.; Miller, M. B.; Barbey, A. K.

10.1101/136259 — neuroscience — Posted on 2017-09-20

554 Genetic Identification of Novel Separase regulators in Caenorhabditis elegans

Melesse, M.; Sloan, D. E.; Benthal, J. T.; Caylor, Q.; Gosine, K.; Bai, X.; Bembenek, J. N.

10.1101/191452 — genetics — Posted on 2017-09-20

555 Variable rates of scent evolution in functionally distinct organs of the NA Sarraceniaceae.

Ho, W.; Kutz, N.; Ng, J.; Riffell, J.

10.1101/079947 — evolutionary biology — Posted on 2017-09-20

556 Thoracolumbar intervertebral disc area morphometry in elderly Chinese men and women: radiographic quantifications at baseline and changes at year-4 follow-up

Wang, J.-Q.; Kaplar, Z.; Griffith, J. F.; Deng, M.; Leung, J. C. S.; Kwok, A. W. L.; Kwok, T.; Leung, P. C.; Wang, Y.-X.

10.1101/139402 — epidemiology — Posted on 2017-09-20

557 Targeting histone deacetylase activity to arrest cell growth and promote neural differentiation in Ewing sarcoma

Souza, B. K.; Lopez, P. L. d. C.; Menegotto, P. R.; Vieira, I. A.; Kersting, N.; Abujamra, A. L.; Brunetto, A. T.; Brunetto, A. L.; Gregianin, L.; de Farias, C. B.; Thiele, C. J.; Roesler, R.

10.1101/191700 — cancer biology — Posted on 2017-09-20

558 Dephosphorylation is the Mechanism of Fibroblast Growth Factor Inhibition of Guanylyl Cyclase-B

Robinson, J. W.; Egbert, J. R.; Davydova, J.; Schmidt, H.; Jaffe, L. A.; Potter, L. R.

10.1101/191684 — biochemistry — Posted on 2017-09-20

559 Competing effects of indirect protection and clustering on the power of cluster-randomized controlled vaccine trials

Hitchings, M. D. T.; Lipsitch, M.; Bellan, S.

10.1101/191163 — epidemiology — Posted on 2017-09-20

560 Quantification of anti-parasite and anti-disease immunity to malaria as a function of age and exposure

Rodriguez-Barraquer, I.; Arinaitwe, E.; Jagannathan, P.; Kamya, M.; Rosenthal, P.; Rek, J.; Dorsey, G.; Nankabirwa, J.; Staedke, S. G.; Kilama, M.; Drakeley, C.; Ssewanyan, I.; Smith, D. L.; Greenhouse, B.

10.1101/191197 — epidemiology — Posted on 2017-09-20

561 Forecasting biodiversity in breeding birds using best practices

Harris, D. J.; Taylor, S.; White, E. P.

10.1101/191130 — ecology — Posted on 2017-09-20

562 LDJump: Estimating Variable Recombination Rates from Population Genetic Data

Hermann, P.; Heissl, A.; Tiemann-Boege, I.; Futschik, A.

10.1101/190876 — bioinformatics — Posted on 2017-09-20

563 Psychophysiological Interactions in a Visual Checkerboard Task: Reproducibility, Reliability, and the Effects of Deconvolution

Di, X.; Biswal, B. B.

10.1101/133454 — neuroscience — Posted on 2017-09-20

564 High-Throughput Identification of Genetic Variation Impact on pre-mRNA Splicing Efficiency

Adamson, S. I.; Zhan, L.; Graveley, B. R.

10.1101/191122 — genomics — Posted on 2017-09-20

565 Cyclin A2 localises in the cytoplasm at the S/G2 transition to activate Plk1

Silva Cascales, H.; Burdova, K.; Mullers, E.; Stoy, H.; von Morgen, P.; Macurek, L.; Lindqvist, A.

10.1101/191437 — cell biology — Posted on 2017-09-20

566 LRSDAY: Long-read sequencing data analysis for yeasts

Yue, J.-X.; Liti, G.

10.1101/184572 — bioinformatics — Posted on 2017-09-20

567 PyFolding: An open-source software package for graphing, analysis and simulation of thermodynamic and kinetic models of protein folding

Lowe, A. R.; Perez-Riba, A.; Itzhaki, L. S.; Main, E.

10.1101/191593 — biochemistry — Posted on 2017-09-20

568 High Peak Density Artifacts in Fourier Transform Mass Spectra and their Effects on Data Analysis

Mitchell, J. M.; Flight, R. M.; Wang, Q.; Kang, W.-Y.; Higashi, R. M.; Fan, T. W.-M.; Lane, A. N.; Moseley, H. N. B.

10.1101/191205 — systems biology — Posted on 2017-09-20

569 Acute and chronic toxicity assessment of benzylpenicillin G residue in cooked meat

Cui, C.; Zhang, X.; Cai, Y.; Lu, S.; Hui, Q.; Liu, X.; Hu, P.; Liu, L.; Shi, F.; Ahmad, W.; Liu, Y.; Zhao, K.; Zhai, F.; Zhang, H.; Xiang, Y.; Li, Y.; Ren, H.; Xiao, P.; Wang, Y.; Liu, Z.

10.1101/191346 — pharmacology and toxicology — Posted on 2017-09-20

570 Functional Brain Network Estimation with Time Series Self-scrubbing

Li, W.; Qiao, L.; Wang, Z.; Shen, D.

10.1101/191262 — neuroscience — Posted on 2017-09-20

571 LRP1 Regulates Peroxisome Biogenesis and Cholesterol Homeostasis in Oligodendrocytes and is Required in CNS Myelin Development and Repair

Lin, J.-P.; Mironova, Y. A.; Shrager, P.; Giger, R. J.

10.1101/189563 — neuroscience — Posted on 2017-09-20

572 Genomic imprinting mediates dosage compensation in a young plant XY system

Muyle, A.; Zemp, N.; Fruchard, C.; Cegan, R.; Vrana, J.; Deschamps, C.; Tavares, R.; Picard, F.; Hobza, R.; Widmer, A.; Marais, G.

10.1101/179044 — evolutionary biology — Posted on 2017-09-20

573 Fibroblasts and alectinib switch the evolutionary games that non-small cell lung cancer plays

Kaznatcheev, A.; Peacock, J.; Basanta, D.; Marusyk, A.; Scott, J. G.

10.1101/179259 — cancer biology — Posted on 2017-09-20

574 Targeting temporal dynamics of microenvironmental factors halts tumor migration and alleviates effects of dynamic tumor heterogeneity

Singh, M.; Tian, X.-J.; Donnenberg, V. S.; Watson, A. M.; Zhang, J.; Stabile, L. P.; Watkins, S. C.; Xing, J.; Sant, S.

10.1101/191221 — cancer biology — Posted on 2017-09-20

575 Lipid-Uptake Pathways and Lipid-Protein interactions in P-glycoprotein Revealed by Coarse-Grained Molecular Dynamics Simulations

Barreto-Ojeda, E.; Corradi, V.; Gu, R.-X.; Tieleman, D. P.

10.1101/191239 — biochemistry — Posted on 2017-09-20

576 Non-canonical circadian oscillations in Drosophila S2 cells drive gene-expression cycles coupled to metabolic oscillations

Rey, G.; Milev, N. B.; Valekunja, U. K.; Ch, R.; Ray, S.; Silva Dos Santos, M.; Nagy, A. D.; Antrobus, R.; MacRae, J. I.; Reddy, A. B.

10.1101/191338 — systems biology — Posted on 2017-09-20

577 Ranking quantitative resistance to Septoria tritici blotch in elite wheat cultivars using automated image analysis

Karisto, P.; Hund, A.; Yu, K.; Anderegg, J.; Walter, A.; Mascher, F.; McDonald, B. A.; Mikaberidze, A.

10.1101/129353 — plant biology — Posted on 2017-09-20

578 Controlling striatal function via anterior frontal cortex stimulation

van Holstein, M; Froböse, M; O'Shea, J; Aarts, E; Cools, R

10.1101/191361 — neuroscience — Posted on 2017-09-20

579 TMS SMART - Scalp Mapping of Annoyance Ratings and Twitches caused by Transcranial Magnetic Stimulation

Meteyard, L.; Holmes, N.

10.1101/191320 — neuroscience — Posted on 2017-09-20

580 Enhanced food-related responses in the ventral medial prefrontal cortex in orexin-deficient narcolepsy patients

van Holst, R. J.; Janssen, L. K.; van Mierlo, P.; Lammers, G. J.; Cools, R.; Overeem, S.; Aarts, E.

10.1101/191544 — neuroscience — Posted on 2017-09-20

581 Whole-brain vasculature reconstruction at the single capillary level

Di Giovanna, A. P.; Tibo, A.; Silvestri, L.; Muellenbroich, M. C.; Costantini, I.; Allegra Mascaro, A. L.; Sacconi, L.; Frasconi, P.; Pavone, F. S.

10.1101/191502 — neuroscience — Posted on 2017-09-20

582 Binding language: Structuring sentences through precisely timed oscillatory mechanisms

Segaert, K.; Mazaheri, A.; Hagoort, P.

10.1101/191494 — neuroscience — Posted on 2017-09-20

583 Urinary candidate biomarkers in an experimental autoimmune myocarditis rat model

Zhao, M.; Wu, J.; Li, X.; Gao, Y.

10.1101/191379 — molecular biology — Posted on 2017-09-20

584 Genetic diversity and mother-child overlap of the gut associated microbiota determined by reduced genome sequencing

Ravi, A.; Avershina, E.; Angell, I. L.; Ludvigsen, J.; Manohar, P.; Padmanaban, S.; Nachimuthu, R.; Rudi, K.

10.1101/191445 — microbiology — Posted on 2017-09-20

585 Proteomic identification of Axc, a novel beta-lactamase with carbapenemase activity in a meropenem-resistant clinical isolate of Achromobacterxylosoxidans

Fleurbaaij, F.; Henneman, A. A.; Corver, J.; Knetsch, C. W.; Smits, W. K.; Nauta, S. T.; Giera, M.; Dragan, I.; Kumar, N.; Lawley, T. D.; Verhoeven, A.; van Leeuwen, H. C.; Kuijper, E.; Hensbergen, P.

10.1101/191403 — microbiology — Posted on 2017-09-20

586 Pharmacodynamic Considerations of Collateral Sensitivity in Design of Antibiotic Treatment Regimen

Udekwu, K. I.; Weiss, H.

10.1101/189381 — microbiology — Posted on 2017-09-20

587 Wine yeast phenomics: a standardized fermentation method for assessing quantitative traits of Saccharomyces cerevisiae strains in enological conditions.

Peltier, E.; Bernard, M.; Trujillo, M.; Prodhomme, D.; Barbe, J.-C.; Gibon, Y.; Marullo, P.

10.1101/191353 — microbiology — Posted on 2017-09-20

588 Comprehensive analysis of central carbon metabolism reveals multiple connections between nutrients, biosynthetic capacity, and cell morphology in Escherichia coli

Westfall, C. S.; Levin, P.

10.1101/191585 — microbiology — Posted on 2017-09-20

589 Evaluating the Role of Cell-free Fetal DNA in Inflammation and Spontaneous Preterm Birth.

van Boeckel, S. R.; MacPherson, H.; Davidson, D. J.; Norman, J. E.; Stock, S. J.

10.1101/191528 — immunology — Posted on 2017-09-20

590 Superior stimulation of female fecundity by subordinate males provides a mechanism for telegony

Pascoal, S.; Jarrett, B. J.; Evans, E.; Kilner, R. M.

10.1101/191510 — evolutionary biology — Posted on 2017-09-20

591 Nano-scale size holes in ER sheets provide an alternative to tubules for highly-curved membranes

Schroeder, L. K.; Barentine, A. E. S.; Schweighofer, S.; Baddeley, D.; Bewersdorf, J.; Bahmanyar, S.

10.1101/191536 — cell biology — Posted on 2017-09-20

592 A molecular model of the mitochondrial genome segregation machinery in Trypanosoma brucei

Hoffmann, A.; Käser, S.; Jakob, M.; Amodeo, S.; Peitsch, C.; Tyc, J.; Vaughan, S.; Zuber, B.; Schneider, A.; Ochsenreiter, T.

10.1101/188987 — cell biology — Posted on 2017-09-20

593 Lipid-protein interactions are unique fingerprints for membrane proteins

Corradi, V.; Mendez-Villuendas, E.; Ingolfsson, H.; Gu, R.-X.; Siuda, I.; Melo, M. N.; Moussatova, A.; Degagne, C.; Sejdiu, B. I.; Singh, G.; Wassenaar, T.; Magnero, K. H. D.; Marrink, S. J.; Tieleman, D. P.

10.1101/191486 — biophysics — Posted on 2017-09-20

594 MEBS, a software platform to evaluate large (meta)genomic collections according to their metabolic machinery: unraveling the sulfur cycle

De Anda, V.; Zapata-Penasco, I.; Poot Hernandez, A. C.; Fruns, L. E.; Contreras Moreira, B.; Souza, V.

10.1101/191288 — bioinformatics — Posted on 2017-09-20

595 The Role Of Circle Of Willis Anatomy Variations In Cardio-embolic Stroke - A Patient-specific Simulation Based Study.

Mukherjee, D.; Jani, N. D.; Narvid, J.; Shadden, S. C.

10.1101/190579 — bioengineering — Posted on 2017-09-20

596 A Cdk9-PP1 kinase-phosphatase switch regulates the elongation-termination transition of RNA polymerase II

Parua, P. K.; Booth, G. T.; Sanso, M.; Benjamin, B.; Tanny, J. C.; Lis, J. T.; Fisher, R. P.

10.1101/190488 — molecular biology — Posted on 2017-09-20

597 Genomic footprints of activated telomere maintenance mechanisms in cancer

Sieverling, L.; Hong, C.; Koser, S. D.; Ginsbach, P.; Kleinheinz, K.; Hutter, B.; Braun, D. M.; Cortes-Ciriano, I.; Xi, R.; Kabbe, R.; Park, P. J.; Eils, R.; Schlesner, M.; Rippe, K.; Jones, D. T. W.; Brors, B.; Feuerbach, L.

10.1101/157560 — genomics — Posted on 2017-09-20

598 Frequent lack of repressive capacity of promoter DNA methylation identified through genome-wide epigenomic manipulation

Ford, E. E.; Grimmer, M. R.; Stolzenburg, S.; Bogdanovic, O.; de Mendoza, A.; Farnham, P. J.; Blancafort, P.; Lister, R.

10.1101/170506 — genomics — Posted on 2017-09-20

599 RecBCD possesses strong coupling between DNA and nucleotide binding that may propel a stepping mechanism during translocation.

Gaydar, V.; Zananir, R.; Dvir, O.; Kaplan, A.; Henn, A.

10.1101/190215 — biochemistry — Posted on 2017-09-20

600 Flexibility to contingency changes distinguishes habitual and goal-directed strategies in humans

Lee, J. J.; Keramati, M.

10.1101/107078 — animal behavior and cognition — Posted on 2017-09-20

601 Interactions and collider bias in case-only gene-environment data

Balazard, F.; Le Fur, S.; Bougneres, P.; Valleron, A.-J.; the Isis-Diab collaborative group,

10.1101/124560 — epidemiology — Posted on 2017-09-20

602 A flexible ontology for inference of emergent whole cell function from relationships between subcellular processes

Hansen, J.; Meretzky, D.; Woldesenbet, S.; Stolovitzky, G.; Iyengar, R.

10.1101/112201 — systems biology — Posted on 2017-09-19

603 Modelling firing regularity in the ventral cochlear nucleus: mechanisms, and effects of stimulus level and synaptopathy

Goodman, D. F. M.; Winter, I. M.; Leger, A. C.; de Cheveigne, A.; Lorenzi, C.

10.1101/121707 — neuroscience — Posted on 2017-09-19

604 Disease implications of animal social networkstructure: a synthesis across social systems

Sah, P.; Mann, J.; Bansal, S.

10.1101/106633 — epidemiology — Posted on 2017-09-19

605 Skip-mers: increasing entropy and sensitivity to detect conserved genic regions with simple cyclic q-grams

Clavijo, B. J.; Garcia Accinelli, G.; Yanes, L.; Barr, K.; Wright, J.

10.1101/179960 — bioinformatics — Posted on 2017-09-19

606 Progressive change in killer-like receptor and GPR56 expression defines cytokine production of human CD4+ T memory cells

Truong, K.-L.; Schlickeiser, S.; Vogt, K.; Boes, D.; Schumann, J.; Appelt, C.; Streitz, M.; Grütz, G.; Meisel, C.; Tomiuk, S.; Polansky, J.; Pascher, A.; Sauer, I.; Gerlach, U.; Sawitzki, B.

10.1101/191007 — immunology — Posted on 2017-09-19

607 Functional Modeling of Plant Growth Dynamics

Xu, Y.; Qiu, Y.; Schnable, J.

10.1101/190967 — plant biology — Posted on 2017-09-19

608 Psychophysiological Interactions in a Visual Checkerboard Task: Reproducibility, Reliability, and the Effects of Deconvolution

Di, X.; Biswal, B. B.

10.1101/133454 — neuroscience — Posted on 2017-09-19

609 The Genomic History Of Southeastern Europe

Mathieson, I.; Alpaslan Roodenberg, S.; Posth, C.; Szecsenyi-Nagy, A.; Rohland, N.; Mallick, S.; Olalde, I.; Broomandkhoshbacht, N.; Candilio, F.; Cheronet, O.; Fernandes, D.; Ferry, M.; Gamarra, B.; Gonzalez Fortes, G.; Haak, W.; Harney, E.; Jones, E.; Keating, D.; Krause-Kyora, B.; Kucukkalipci, I.; Michel, M.; Mittnik, A.; Nägele, K.; Novak, M.; Oppenheimer, J.; Patterson, N.; Pfrengle, S.; Sirak, K.; Stewardson, K.; Vai, S.; Alexandrov, S.; Alt, K. W.; Andreescu, R.; Antonovic, D.; Ash, A.; Atanassova, N.; Bacvarov, K.; Balazs Gusztav, M.; Bocherens, H.; Bolus, M.; Boroneant, A.; B

10.1101/135616 — genetics — Posted on 2017-09-19

610 Stability of subsystem solutions in agent-based models

Perc, M.

10.1101/191106 — evolutionary biology — Posted on 2017-09-19

611 Using Mobile Phones As Acoustic Sensors For High-Throughput Mosquito Surveillance

Mukundarajan, H.; Hol, F. J. H.; Castillo, E. A.; Newby, C.; Prakash, M.

10.1101/120519 — ecology — Posted on 2017-09-19

612 Loss of generalist plant species and functional diversity decreases the robustness of a seed dispersal network

Bastazini, V. A. G.; Debastiani, V. J.; Azambuja, B. O.; Guimaraes, P. R.; Pillar, V. D.

10.1101/187179 — ecology — Posted on 2017-09-19

613 Structured illumination to spatially map chromatin motions

Bonin, K.; Smelser, A.; Salvador-Moreno, N.; Holzwarth, G.; Wang, K.; Levi, P.; Vidi, P.-A.

10.1101/191098 — cell biology — Posted on 2017-09-19

614 Testing the moderation of quantitative gene by environment interactions in unrelated individuals

Tahmasbi, R.; Evans, L. M.; Turkheimer, E.; Keller, M. C.

10.1101/191080 — bioinformatics — Posted on 2017-09-19

615 Bayesian inference and simulation approaches improve the assessment of Elo-scores in the analysis of social behaviour

Goffe, A. S.; Fischer, J.; Sennhenn-Reulen, H.

10.1101/160671 — animal behavior and cognition — Posted on 2017-09-19

616 The Cell-Cycle Transcriptional Network Generates and Transmits a Pulse of Transcription Once Each Cell Cycle

Cho, C.-Y.; Kelliher, C. M.; Haase, S. B.

10.1101/190686 — systems biology — Posted on 2017-09-19

617 The partial duplication of an E3-ligase gene in Triticeaespecies mediates resistance to powdery mildew fungi

Rajaraman, J.; Douchkov, D.; Lueck, S.; Hensel, G.; Nowara, D.; Pogoda, M.; Rutten, T.; Meitzel, T.; Hoefle, C.; Hueckelhoven, R.; Klinkenberg, J.; Trujillo, M.; Bauer, E.; Schmutzer, T.; Himmelbach, A.; Mascher, M.; Lazzari, B.; Stein, N.; Kumlehn, J.; Schweizer, P.

10.1101/190728 — plant biology — Posted on 2017-09-19

618 Effects of regional differences on the urinary proteomes of healthy Chinese individuals

Wu, J.; Qin, W.; Pan, L.; Zhang, F.; Wang, X.; Zhang, B.; Shan, G.; Gao, Y.

10.1101/190710 — physiology — Posted on 2017-09-19

619 Loss of bone marrow cells including CD34+ cells following CCR5-tropic HIV-1 infection of humanized NOD/SCID/JAK3null mice and partial protection of those cells by a promotor-targeting shRNA

Tsukamoto, T.

10.1101/190702 — microbiology — Posted on 2017-09-19

620 Superior ab initio Identification, Annotation and Characterisation of TEs and Segmental Duplications from Genome Assemblies.

ZENG, L.; Kortschak, R. D.; Raison, J. M.; Bertozzi, T.; Adelson, D. L.

10.1101/190694 — bioinformatics — Posted on 2017-09-19

621 Precopulatory behavior and sexual conflict in the desert locust

Golov, Y.; Rillich, J.; Harari, A.; Ayali, A.

10.1101/190793 — animal behavior and cognition — Posted on 2017-09-19

622 Gene synthesis allows biologists to source genes from farther away in the tree of life

Kunjapur, A.; Pfingstag, P.; Thompson, N. C.

10.1101/190868 — synthetic biology — Posted on 2017-09-19

623 The foraging perspective on economic choice

Hayden, B.

10.1101/190991 — neuroscience — Posted on 2017-09-19

624 Microglia remodel synapses by presynaptic trogocytosis and spine head filopodia induction

Weinhard, L.; Neniskyte, U.; di Bartolomei, G.; Bolasco, G.; Machado, P.; Schieber, N.; Exiga, M.; Vadisiute, A.; Raggioli, A.; Schertel, A.; Schwab, Y.; Gross, C. T.

10.1101/190975 — neuroscience — Posted on 2017-09-19

625 Decoupling of the nuclear division cycle and cell size control in the coenocytic cycle of the ichthyosporean Sphaeroforma arctica

Ondracka, A.; Ruiz-Trillo, I.

10.1101/190900 — microbiology — Posted on 2017-09-19

626 Cryo-EM reconstruction of AlfA from Bacillus subtilis reveals the structure of a simplified actin-like filament at 3.4 A resolution

Szewczak-Harris, A.; Löwe, J.

10.1101/190744 — microbiology — Posted on 2017-09-19

627 A novel combination of cyclophosphamide and anti-ICOS mAb prevents tumor growth by affecting regulatory T cells in mice with a human immune system

Burlion, A.; Ramos, R.; Sendeyo, K.; Corneau, A.; Caux, C.; Piaggio, E.; Caux, C.; marodon, g.

10.1101/191031 — immunology — Posted on 2017-09-19

628 Accurate Genomic Prediction Of Human Height

Lello, L.; Avery, S. G.; Tellier, L.; Vazquez, A.; de los Campos, G.; Hsu, S. D. H.

10.1101/190124 — genomics — Posted on 2017-09-19

629 Integration of human pancreatic islet genomic data refines regulatory mechanisms at Type 2 Diabetes susceptibility loci

Thurner, M.; van de Bunt, M.; Gaulton, K.; Barrett, A.; Bennett, A. J.; Torres, J. M.; Nylander, V.; Mahajan, A.; Bell, C. G.; Lowe, R.; Beck, S.; Rakyan, V. K.; Gloyn, A. L.; McCarthy, M. I.

10.1101/190892 — genomics — Posted on 2017-09-19

630 Psychosis and the level of mood incongruence in Bipolar Disorder are related to genetic liability for Schizophrenia

Allardyce, J.; Leonenko, G.; Hamshere, M.; Pardinas, A.; Forty, L.; Knott, S.; Gordon-Smith, K.; Porteous, D.; Hayward, C.; Di Florio, A.; Jones, L.; McIntosh, A.; Owen, M. J.; Holmans, P.; Walters, J.; Craddock, N.; Jones, I.; O'Donovan, M. C.; Escott-Price, V.

10.1101/160119 — genetics — Posted on 2017-09-19

631 Genome-scale transcriptional regulatory network models of psychiatric and neurodegenerative disorders

Pearl, J. R.; Bergey, D. E.; Funk, C. C.; Basu, B.; Oshone, R.; Shannon, P.; Hood, L.; Price, N. D.; Colantuoni, C.; Ament, S. A.

10.1101/190959 — genetics — Posted on 2017-09-19

632 Evolutionary rate shifts suggest species-specific adaptation events in HIV-1 and SIV

Gelbart, M.; Stern, A.

10.1101/190769 — evolutionary biology — Posted on 2017-09-19

633 Effects of multiple sources of genetic drift on pathogen variation within hosts

Kennedy, D.; Dwyer, G.

10.1101/190918 — evolutionary biology — Posted on 2017-09-19

634 The gateway into Remote Oceania: new insights from genome-wide data

Pugach, I.; Duggan, A. T.; Merriwether, D. A.; Friedlaender, F. R.; Friedlaender, J. S.; Stoneking, M.

10.1101/190843 — evolutionary biology — Posted on 2017-09-19

635 C. elegans DBL-1/BMP Regulates Lipid Accumulation via Interaction with Insulin Signaling

Clark, J.; Meade, M.; Ranepura, G.; Hall, D. H.; Savage-Dunn, C.

10.1101/191049 — cell biology — Posted on 2017-09-19

636 The Early Diagnosis in Lung Cancer by the Detection of Circulating Tumor DNA

Tian, G.; Li, X.; Xie, Y.; Xu, F.; Yu, D.; Cao, F.; Wang, X.; Yu, F.; Zhong, W.; Lu, S.; Tu, X.; Yao, X.; He, J.; Liu, C.

10.1101/189340 — cancer biology — Posted on 2017-09-19

637 Curated compendium of human transcriptional biomarker data

Golightly, N. P.; Bischoff, A. I.; Bell, A.; Hollingsworth, P. D.; Piccolo, S. R.

10.1101/191064 — cancer biology — Posted on 2017-09-19

638 Recentrifuge: robust comparative analysis and contamination removal for metagenomic data

Marti, J. M.

10.1101/190934 — bioinformatics — Posted on 2017-09-19

639 Efficient management and analysis of large-scale genome-wide data with two R packages: bigstatsr and bigsnpr

Prive, F.; Aschard, H.; Blum, M. G. B.

10.1101/190926 — bioinformatics — Posted on 2017-09-19

640 Transition metal binding selectivity in proteins and its correlation with the phylogenomic classification of the cation diffusion facilitator protein family

Barber-Zucker, S.; Shaanan, B.; Zarivach, R.

10.1101/164509 — biochemistry — Posted on 2017-09-19

641 Biogenesis of a mitochondrial DNA inheritance machinery in the mitochondrial outer membrane

Schneider, A.; Käser, S.; Willemin, M.; Schnarwiler, F.; Schimanski, B.; Poveda Huertes, D.; Oeljeklaus, S.; Warscheid, B.; Meisinger, C.

10.1101/190751 — biochemistry — Posted on 2017-09-19

642 From word models to executable models of signaling networks using automated assembly

Gyori, B. M.; Bachman, J. A.; Subramanian, K.; Muhlich, J. L.; Galescu, L.; Sorger, P. K.

10.1101/119834 — systems biology — Posted on 2017-09-19

643 Brain-behavior patterns define a dimensional biotype in medication-naïve adults with attention-deficit hyperactivity disorder

Lin, H.-Y.; Cocchi, L.; Zalesky, A.; Lv, J.; Perry, A.; Tseng, W.-Y. I.; Kundu, P.; Breakspear, M.; Gau, S. S.-F.

10.1101/190660 — neuroscience — Posted on 2017-09-19

644 Untangling Sequences: Behavior vs. External Causes

Ahmad, S.; Hawkins, J.

10.1101/190678 — neuroscience — Posted on 2017-09-19

645 A Cdk9-PP1 switch regulates the elongation-termination transition of RNA polymerase II

Parua, P. K.; Booth, G. T.; Sanso, M.; Benjamin, B.; Tanny, J. C.; Lis, J. T.; Fisher, R. P.

10.1101/190488 — molecular biology — Posted on 2017-09-19

646 Cdk9 regulates a promoter-proximal checkpoint to modulate RNA Polymerase II elongation rate

Booth, G. T.; Parua, P. K.; Sanso, M.; Fisher, R. P.; Lis, J. T.

10.1101/190512 — molecular biology — Posted on 2017-09-19

647 MULTILOCUS SEQUENCE TYPING REVEALS A UNIQUE CO-DOMINANT POPULATION STRUCTURE OF CRYPTOCOCCUS NEOFORMANS VAR. GRUBII IN VIETNAM

Lam, T. T.; Phan, T. H.; Rattanavong, S.; Nguyen, T. M.; Duong, A. V.; Dacon, C.; Hoang, T. N.; Nguyen, L. P. H.; Tran, C. T. H.; Davong, V.; Nguyen, C. V. V.; Thwaites, G. E.; Boni, M. F.; Dance, D.; Ashton, P. M.; Day, J. N.

10.1101/190785 — molecular biology — Posted on 2017-09-19

648 The Cryptococcus neoformans Titan cell is an inducible and regulated morphotype underlying pathogenesis

Dambuza, I. M.; Drake, T.; Chapuis, A.; Taylor-Smith, L.; LeGrave, N.; Rasmussen, T.; Fisher, M. C.; Bicanic, T.; Harrison, T. S.; Jaspars, M.; May, R. C.; Brown, G. D.; Yuecel, R.; MacCallum, D. M.; Ballou, E. R.

10.1101/190587 — microbiology — Posted on 2017-09-19

649 Evolution with a seed bank: the population genetic consequences of microbial dormancy

Shoemaker, W. R.; Lennon, J. T.

10.1101/156356 — microbiology — Posted on 2017-09-19

650 Framework For Quality Assessment Of Whole Genome, Cancer Sequences

Whalley, J. P.; Buchhalter, I.; Rheinbay, E.; Raine, K. M.; Kleinheinz, K.; Stobbe, M. D.; Werner, J.; Beltran, S.; Gut, M.; Huebschmann, D.; Hutter, B.; Livitz, D.; Perry, M.; Rosenberg, M.; Saksena, G.; Trotta, J.-R.; Eils, R.; Korbel, J.; Gerhard, D. S.; Campbell, P.; Getz, G.; Schlesner, M.; Gut, I. G.; PCAWG-Tech, ; PCAWG-QC, ; PCAWG Network,

10.1101/140921 — genomics — Posted on 2017-09-19

651 Despite reproductive interference, the net outcome of reproductive interactions among spider mite species is not necessarily costly

Clemente, S. H.; Santos, I.; Ponce, A. R.; Rodrigues, L. R.; Varela, S. A. M.; Magalhaes, S.

10.1101/113274 — ecology — Posted on 2017-09-19

652 Regulator of calcineurin-2 is a ciliary protein with a role in cilia length control.

Stevenson, N.; Bergen, D.; Xu, A.; Wyatt, E.; Henry, F.; McCaughey, J.; Vuolo, L.; Hammond, C.; Stephens, D.

10.1101/188946 — cell biology — Posted on 2017-09-19

653 Simultaneously measuring image features and resolution in live-cell STED images

Barentine, A. E. S.; Schroeder, L. K.; Graff, M.; Baddeley, D.; Bewersdorf, J.

10.1101/190652 — cell biology — Posted on 2017-09-19

654 Effects of mechanical loading on cortical defect repair using a novel mechanobiological model of bone healing

Liu, C.; Carrera, R.; Flamini, V.; Kenny, L.; Cabahug-Zuckerman, P.; George, B.; Hunter, D.; Liu, B.; Singh, G.; Leucht, P.; Mann, K. A.; Helms, J. A.; Castillo, A. B.

10.1101/190819 — bioengineering — Posted on 2017-09-19

655 Out-of-Register Aβ42 Assemblies as Models for Neurotoxic Oligomers and Fibrils

Xi, W.; Vanderford, E.; Hansmann, U.

10.1101/190835 — biochemistry — Posted on 2017-09-19

656 Genetic differences in the behavioral organization of binge eating, conditioned food reward, and compulsive-like eating in C57BL/6J and DBA/2J strains

Babbs, R. K.; Kelliher, J. C.; Scotellaro, J. L.; Yazdani, N.; Ruan, Q. T.; Mulligan, M. K.; Bryant, C. D.

10.1101/190827 — animal behavior and cognition — Posted on 2017-09-19

657 An interaction between cancer progression and social environment in Drosophila

Dawson, E.; Bailly, T.; Dos Santos, J.; Moreno, C.; Devilliers, M.; Maroni, B.; Sueur, C.; Casali, A.; Ujvari, B.; Thomas, F.; Montagne, J.; Mery, F.

10.1101/143560 — animal behavior and cognition — Posted on 2017-09-19

658 Retrosplenial cortex and its role in spatial cognition

Mitchell, A. S.; Czajkowski, R.; Zhang, N.; Jeffery, K.; Nelson, A.

10.1101/190801 — animal behavior and cognition — Posted on 2017-09-19

659 Heterogeneous chromatin mobility derived from chromatin states is a determinant of genome organisation in S. cerevisiae

Sewitz, S. A.; Fahmi, Z.; Aljebali, L.; Bancroft, J.; Brustolini, O. J. B.; Saad, H.; Goiffon, I.; Varnai, C.; Wingett, S.; Wong, H.; Javierre, B.-M.; Schoenfelder, S.; Andrews, S.; Oliver, S. G.; Fraser, P.; Bystricky, K.; Lipkow, K.

10.1101/106344 — systems biology — Posted on 2017-09-19

660 Using spatiotemporal source separation to identify prominent features in multichannel data without sinusoidal filters

Cohen, M. X.

10.1101/190470 — neuroscience — Posted on 2017-09-19

661 CA2 Neuronal Activity Controls Hippocampal Oscillations and Social Behavior

Alexander, G.; Brown, L.; Farris, S.; Lustberg, D.; Pantazis, C.; Gloss, B.; Plummer, N.; Riddick, N.; Moy, S.; Jensen, P.; Dudek, S.

10.1101/190504 — neuroscience — Posted on 2017-09-19

662 Limitations of compensatory plasticity: the organization of the primary sensorimotor cortex in foot-using bilateral upper limb dysplasics

Striem-Amit, E.; Vannuscorps, G.; Caramazza, A.

10.1101/190462 — neuroscience — Posted on 2017-09-19

663 A blood-based signature of cerebral spinal fluid Aβ1-42 status

Goudey, B.; Fung, B. J.; Schrieber, C.; Faux, N. G.

10.1101/190207 — neuroscience — Posted on 2017-09-19

664 Structural priming is supported by different components of non-declarative memory: Evidence from priming across the lifespan

Heyselaar, E.; Wheeldon, L.; Segaert, K.

10.1101/190355 — neuroscience — Posted on 2017-09-19

665 Harnessing the adaptive potential of mechanoresponsive proteins to overwhelm pancreatic cancer dissemination and invasion

Surcel, A.; Schiffhauer, E. S.; Thomas, D.; Zhu, Q.; DiNapoli, K.; Herbig, M.; Otto, O.; Guck, J.; Jaffee, E.; Iglesias, P.; Anders, R.; Robinson, D.

10.1101/190553 — cancer biology — Posted on 2017-09-19

666 RNA binding and HEPN nuclease activation are decoupled in CRISPR-Cas13a

Tambe, A.; East-Seletsky, A.; Knott, G. J.; Doudna, J. A.; O'Connell, M. R.

10.1101/190603 — biochemistry — Posted on 2017-09-19

667 Big trouble with little inserts: boundaries in metagenomic screenings using lacZα based vectors

Alves, L. d. F.; Borelli, T. C.; Westmann, C. A.; Silva-Rocha, R.; Guazzaroni, M.-E.

10.1101/190520 — molecular biology — Posted on 2017-09-19

668 Integration of anatomy ontologies and Evo-Devo using structured Markov chains suggests a new framework for modeling discrete phenotypic traits

Tarasov, S.

10.1101/188672 — evolutionary biology — Posted on 2017-09-19

669 Functional genomics of lipid metabolism in the oleaginous yeast Rhodosporidium toruloides

Coradetti, S.; Pinel, D.; Geiselman, G.; Ito, M.; Mondo, S.; Reilly, M.; Cheng, Y.-F.; Bauer, S.; Grigoriev, I.; Gladden, J.; Simmons, B.; Brem, R.; Arkin, A.; Skerker, J.

10.1101/190546 — systems biology — Posted on 2017-09-19

670 Diminished dynamic cerebral autoregulatory capacity with forced oscillations in mean arterial pressure with elevated cardiorespiratory fitness

Labrecque, L.; Rahimaly, K.; Imhoff, S.; Paquette, M.; Le Blanc, O.; Malenfant, S.; Lucas, S. J.; Bailey, D. M.; Smirl, J. D.; Brassard, P.

10.1101/190405 — physiology — Posted on 2017-09-19

671 Progression of regional grey matter atrophy in multiple sclerosis

Eshaghi, A.; Marinescu, R. V.; Young, A. L.; Firth, N. C.; Prados, F.; Cardoso, M. J.; Tur, C.; De Angelis, F.; Cawley, N.; Brownlee, W.; De Stefano, N.; Stromillo, M. L.; Battaglini, M.; Ruggieri, S.; Gasperini, C.; Filippi, M.; Rocca, M. A.; Rovira, A.; Sastre-Garriga, J.; Geurts, J.; Vrenken, H.; Wottschel, V.; Leurs, C. E.; Uitdehaag, B.; Pirpamer, L.; Enzinger, C.; Ourselin, S.; Wheeler-Kingshott, C. A. G.; Chard, D.; Thompson, A. J.; Barkhof, F.; Alexander, D. C.; Ciccarelli, O.

10.1101/190116 — neuroscience — Posted on 2017-09-19

672 The hidden spatial dimension of alpha: 10 Hz perceptual echoes propagate as periodic travelling waves in the human brain.

VanRullen, R.; Lozano-Soldevilla, D.

10.1101/190595 — neuroscience — Posted on 2017-09-19

673 Recent African gene flow responsible for excess of old rare genetic variation in Great Britain

Platt, A.; Hey, J.

10.1101/190066 — genomics — Posted on 2017-09-19

674 An Algorithmic Information Calculus for Causal Discovery and Reprogramming Systems

Zenil, H.; Kiani, N. A.; Marabita, F.; Deng, Y.; Elias, S.; Schmidt, A.; Ball, G.; Tegner, J.

10.1101/185637 — systems biology — Posted on 2017-09-18

675 Activated CD8 T cells express two distinct P-Selectin Ligands

Carlow, D. A.; Tra, M. C.; Ziltener, H. J.

10.1101/167957 — immunology — Posted on 2017-09-18

676 The Emergence of Egalitarianism in a Model of Early Human Societies

Calmettes, G.; Weiss, J.

10.1101/166116 — evolutionary biology — Posted on 2017-09-18

677 ABLE: an Activity-Based Level Set Segmentation Algorithm for Two-Photon Calcium Imaging Data

Reynolds, S.; Abrahamsson, T.; Schuck, R.; Sjöström, P. J.; Schultz, S. R.; Dragotti, P. L.

10.1101/190348 — neuroscience — Posted on 2017-09-18

678 Accurate Genomic Prediction Of Human Height

Lello, L.; Avery, S. G.; Tellier, L.; Vazquez, A.; de los Campos, G.; Hsu, S. D. H.

10.1101/190124 — genomics — Posted on 2017-09-18

679 Differential distribution of Neandertal genomic signatures in human mitochondrial haplogroups

Ferreira, R. C.; Rodrigues, C. R.; Broach, J. R.; Briones, M. R.

10.1101/190363 — genomics — Posted on 2017-09-18

680 Receptor-mediated Drp1 oligomerization on endoplasmic reticulum

Ji, W.-K.; Chakrabarti, R.; Fan, X.; Schoenfeld, L.; Strack, S.; Higgs, H. N.

10.1101/190538 — cell biology — Posted on 2017-09-18

681 Deep Learning based multi-omics integration robustly predicts survival in liver cancer

Chaudhary, K.; Poirion, O. B.; Lu, L.; Garmire, L. X.

10.1101/114892 — bioinformatics — Posted on 2017-09-18

682 Ventral hippocampal CA1 and CA3 differentially mediate learned approach-avoidance conflict processing

Schumacher, A.; Villaruel, F.; Riaz, S.; Lee, A. C. H.; Ito, R.

10.1101/180513 — neuroscience — Posted on 2017-09-18

683 Global determinants of navigation ability

Coutrot, A.; Silva, R.; Manley, E.; de Cothi, W.; Sami, S.; Bohbot, V.; Wiener, J.; Hölscher, C.; Dalton, R. C.; Hornberger, M.; Spiers, H.

10.1101/188870 — neuroscience — Posted on 2017-09-18

684 Integrated analysis of patterns of DNA breaks reveals break formation mechanisms and their population distribution during replication stress

Zhu, Y.; Biernacka, A.; Pardo, B.; Forey, R.; Dojer, N.; Yousefi, R.; Nde Kengne, J. B.; Fongang, B.; Mitra, A.; Li, J.; Skrzypczak, M.; Kudlicki, A.; Pasero, P.; Ginalski, K.; Rowicka, M.

10.1101/171439 — genomics — Posted on 2017-09-18

685 Snord116-dependent diurnal rhythm of DNA methylation in mouse cortex

Coulson, R.; Yasui, D.; Dunaway, K.; Laufer, B.; Vogel-Ciernia, A.; Mordaunt, C.; Totah, T.; LaSalle, J.

10.1101/184788 — genomics — Posted on 2017-09-18

686 Pervasive contingency and entrenchment in a billion years of Hsp90 evolution

Starr, T. N.; Flynn, J. M.; Mishra, P.; Bolon, D. N. A.; Thornton, J. W.

10.1101/189803 — evolutionary biology — Posted on 2017-09-18

687 Immune Loss as a Driver of Coexistence During Host-Phage Coevolution

Weissman, J. L.; Holmes, R.; Barrangou, R.; Moineau, S.; Fagan, W. F.; Levin, B. R.; Johnson, P. L.

10.1101/105908 — ecology — Posted on 2017-09-18

688 Loss of MECP2 leads to induction of p53 and cell senescence

Lowry, W. E.; Ohashi, M.; Lee, P.; Fu, K.; Vargas, B.; Allen, D. E.; Korsakova, E.; Cinkornpumin, J. K.; Salas, C.; Park, J. C.; Germanguz, I.; Chronis, K.; Kuoy, E.; Tran, S.; Xiao, X.; Pellegrini, M.; Plath, K.

10.1101/130401 — developmental biology — Posted on 2017-09-18

689 Intratumor Heterogeneity and Circulating Tumor Cell Clusters

Ahmed, Z.; Gravel, S.

10.1101/113480 — cancer biology — Posted on 2017-09-18

690 In silico mechanobiochemical modeling of morphogenesis in cell monolayers

Yuan, H.; Marzban, B.

10.1101/189175 — biophysics — Posted on 2017-09-18

691 An extensive enhancer-promoter map generated by genome-scale analysis of enhancer and gene activity patterns

Hait, T. A.; Amar, D.; Shamir, R.; Elkon, R.

10.1101/190231 — bioinformatics — Posted on 2017-09-18

692 A Yeast Global Genetic Screen Reveals that Metformin Induces an Iron Deficiency-Like State

Stynen, B.; Abd-Rabbo, D.; Kowarzyk, J.; Miller-Fleming, L.; Ralser, M.; Michnick, S.

10.1101/190389 — systems biology — Posted on 2017-09-18

693 Identifying structural variants using linked-read sequencing data

Elyanow, R.; Wu, H.-T.; Raphael, B. J.

10.1101/190454 — genomics — Posted on 2017-09-18

694 Modified penetrance of coding variants by cis-regulatory variation shapes human traits

Castel, S. E.; Cervera, A.; Mohammadi, P.; Aguet, F.; Reverter, F.; Wolman, A.; Guigo, R.; Vasileva, A.; Lappalainen, T.

10.1101/190397 — genetics — Posted on 2017-09-18

695 Deciphering cell lineage specification during male sex determination with single-cell RNA sequencing

Stevant, I.; Neirijnck, Y.; Borel, C.; Escoffier, J.; Smith, L. B.; Antonarakis, S. E.; Dermitzakis, E. T.; Nef, S.

10.1101/190264 — developmental biology — Posted on 2017-09-18

696 Time-conditional properties of branches in coalescent gene trees

Platt, A.

10.1101/189209 — genetics — Posted on 2017-09-18

697 Two diseases, same person: moving towards a combined HIV and TB continuum of care

Granich, R.; Gupta, S.

10.1101/186833 — epidemiology — Posted on 2017-09-18

698 Sociodemographic patterning in the oral microbiome of a diverse sample of New Yorkers

Renson, A.; Jones, H. E.; Beghini, F.; Segata, N.; Zolnik, C.; Usyk, M.; Thorpe, L.; Burk, R.; Waldron, L. D.; Dowd, J. B.

10.1101/189225 — epidemiology — Posted on 2017-09-18

699 Preliminary results of models to predict areas in the Americas with increased likelihood of Zika virus transmission in 2017.

10.1101/187591 — epidemiology — Posted on 2017-09-18

700 A brain wide circuit model of heat evoked swimming behavior in larval zebrafish

Haesemeyer, M.; Robson, D. N.; Li, J. M.; Schier, A. F.; Engert, F.

10.1101/190447 — neuroscience — Posted on 2017-09-18

701 An "invisible" ubiquitin conformation is required for efficient phosphorylation by PINK1

Gladkova, C.; Schubert, A. F.; Wagstaff, J. L.; Pruneda, J. N.; Freund, S. M. V.; Komander, D.

10.1101/189027 — molecular biology — Posted on 2017-09-18

702 Methods matter: Influential purification and analysis parameters for intracellular parasite metabolomics

Carey, M. A.; Covelli, V.; Brown, A.; Cooper, J. G.; Guler, J. L.

10.1101/190421 — microbiology — Posted on 2017-09-18

703 The differentially expressed translationally controlled tumor proteins TCTP1 and TCTP2 in Trypanosoma brucei

Jojic, B.; Amodeo, S.; Ochsenreiter, T.

10.1101/190314 — microbiology — Posted on 2017-09-18

704 Genetic interactions between the chromosome axis-associated protein Hop1 and homologous recombination determinants in Schizosaccharomyces pombe

Brown, S. D.; Jarosinska, O. D.; Lorenz, A.

10.1101/190439 — genetics — Posted on 2017-09-18

705 Coalescent theory of migration network motifs

Alcala, N.; Goldberg, A.; Ramakrishnan, U.; Rosenberg, N. A.

10.1101/190249 — genetics — Posted on 2017-09-18

706 Symbiodinium functional diversity and clade specificity under global change stressors

Davies, S. W.; Ries, J. B.; Marchetti, A.; Granzotti, R.; Castillo, K. D.

10.1101/190413 — ecology — Posted on 2017-09-18

707 k-mer Distributions of Aminoacid Sequences are Optimised Across the Proteome

Morozov, A. A.

10.1101/190280 — bioinformatics — Posted on 2017-09-18

708 Effect of vertical slit turbulence on metabolism and swimming behavior of juvenile grass carp (ctenopharyngodon idella)

Yuan, X.; Jiang, Q.; Meng, X.; Tu, Z.; Zhou, Y.; Huang, Y.

10.1101/190272 — animal behavior and cognition — Posted on 2017-09-18

709 The virome of Drosophila suzukii, an invasive pest of soft fruit

Medd, N. C.; Fellous, S.; Nakai, M.; Xuereb, A.; Cross, J. V.; Obbard, D. J.

10.1101/190322 — microbiology — Posted on 2017-09-18

710 Gene-level differential analysis at transcript-level resolution

Yi, L.; Pimentel, H.; Bray, N. L.; Pachter, L.

10.1101/190199 — bioinformatics — Posted on 2017-09-18

711 METHimpute: Imputation-guided construction of complete methylomes from WGBS data

Taudt, A. S.; Roquis, D.; Vidalis, A.; Wardenaar, R.; Johannes, F.; Colome Tatche, M.

10.1101/190223 — bioinformatics — Posted on 2017-09-18

Cheng, P.; Li, H.; Yuan, L.; Li, H.; Xi, L.; Zhang, J.; Liu, J.; Wang, Y.; Zhao, H.; Zhao, H.; Han, S.

10.1101/190173 — plant biology — Posted on 2017-09-18

713 A unified theory of distraction in human perceptual, cognitive and economic decision-making

Li, V.; Michael, E.; Balaguer, J.; Herce Castanon, S.; Summerfield, C.

10.1101/160143 — neuroscience — Posted on 2017-09-18

714 Understanding short-term interactions between arousal and attention in infants and children: applying the Aston-Jones framework.

Wass, S.

10.1101/190108 — neuroscience — Posted on 2017-09-18

715 A nearly optimal sequential testing approach to permutation-based association testing

Hecker, J.; Ruczinski, I.; Coull, B.; Lange, C.

10.1101/186361 — genetics — Posted on 2017-09-18

716 Association between alcohol consumption and Alzheimer’s disease: A Mendelian Randomization Study

Andrews, S. J.; Anstey, K. J.

10.1101/190165 — genetics — Posted on 2017-09-18

717 Pervasive contingency and entrenchment in a billion years of Hsp90 evolution

Starr, T. N.; Flynn, J. M.; Mishra, P.; Bolon, D. N. A.; Thornton, J. W.

10.1101/189803 — evolutionary biology — Posted on 2017-09-18

718 Negative frequency-dependent selection is frequently confounding

Brisson, D.

10.1101/113324 — evolutionary biology — Posted on 2017-09-18

719 Flexible, Cluster-Based Analysis of the Electronic Medical Record of Sepsis with Composite Mixture Models

Mayhew, M. B.; Petersen, B. K.; Sales, A. P.; Greene, J. D.; Liu, V. X.; Wasson, T. S.

10.1101/160465 — bioinformatics — Posted on 2017-09-18

720 An extensive enhancer-promoter map generated by genome-scale analysis of enhancer and gene activity patterns

Hait, T. A.; Amar, D.; Shamir, R.; Elkon, R.

10.1101/190231 — bioinformatics — Posted on 2017-09-18

721 A closer look at cross-validation for assessing the accuracy of gene regulatory networks and models

Tabe-Bordbar, S.; Emad, A.; Zhao, S. D.; Sinha, S.

10.1101/190157 — bioinformatics — Posted on 2017-09-18

722 Inferring demographic parameters in bacterial genomic data using Bayesian and hybrid phylogenetic methods

Duchene, S.; Duchene, D.; Geoghegan, J.; Dyson, Z. A.; Hawkey, J.; Holt, K. E.

10.1101/190041 — bioinformatics — Posted on 2017-09-18

723 Influence of fecal collection conditions and 16S rRNA gene sequencing protocols at two centers on human gut microbiota analysis

Penington, J. S.; Penno, M. A. S.; Ngui, K. M.; Ajami, N. J.; Roth-Schulze, A. J.; Wilcox, S. A.; Bandala-Sanchez, E.; Wentworth, J. M.; Barry, S. C.; Brown, C. Y.; Couper, J. J.; Petrosino, J. F.; Papenfuss, A. T.; Harrison, L. C.; The ENDIA Study Group,

10.1101/175877 — bioinformatics — Posted on 2017-09-18

724 RecBCD possesses strong coupling between DNA and nucleotides binding that may propel stepping mechanism during translocation

Gaydar, V.; Zananir, R.; Dvir, O.; Kaplan, A.; Henn, A.

10.1101/190215 — biochemistry — Posted on 2017-09-18

725 An interaction between cancer progression and social environment in Drosophila

Dawson, E.; Bailly, T.; Dos Santos, J.; Moreno, C.; Devilliers, M.; Maroni, B.; Sueur, C.; Casali, A.; Ujvari, B.; Thomas, F.; Montagne, J.; Mery, F.

10.1101/143560 — animal behavior and cognition — Posted on 2017-09-18

726 Neural Computations Underpinning The Strategic Management Of Influence In Advice Giving

Hertz, U.; Palminteri, S.; Brunetti, S.; Olesen, C.; Frith, C.; Bahrami, B.

10.1101/121947 — neuroscience — Posted on 2017-09-18

727 Canvas SPW: Calling De Novo Copy Number Variants In Pedigrees

Ivakhno, S.; Roller, E.; Colombo, C.; Tedder, P.; Cox, A. J.

10.1101/121939 — bioinformatics — Posted on 2017-09-18

728 Single-cell transcriptomic profiling of progenitors of the oligodendrocyte lineage reveals transcriptional convergence during development

Marques, S.; Vanichkina, D.; van Bruggen, D.; Floriddia, E.; Munguba, H.; Varemo, L.; Giacomello, S.; Mendanha Falcao, A.; Meijer, M.; Samudyata, S.; Codeluppi, S.; Bjorklund, A.; Linnarsson, S.; Hjerling-Leffler, J.; Taft, R.; Castelo-Branco, G.

10.1101/186445 — neuroscience — Posted on 2017-09-17

729 Correlative live and super-resolution imaging reveals the dynamic structure of replication domains

Xiang, W.; Roberti, M. J.; Heriche, J.-K.; Huet, S.; Alexander, S.; Ellenberg, J.

10.1101/189373 — cell biology — Posted on 2017-09-17

730 Nonlinear dynamical shaping of the fitness landscape of an evolving tumor to combat competitive release

West, J.; Ma, Y.; Newton, P. K.

10.1101/190140 — cancer biology — Posted on 2017-09-17

731 The Chromosomal Basis of Species Initiation: Prdm9 as an Anti-Speciation Gene

Forsdyke, D. R.

10.1101/170860 — evolutionary biology — Posted on 2017-09-17

732 A more accurate account of the effect of k-space sampling and signal decay on the effective spatial resolution in functional MRI

Chaimow, D.; Shmuel, A.

10.1101/097154 — neuroscience — Posted on 2017-09-17

733 The brain compass: a perspective on how self-motion updates the head direction cell attractor

Laurens, J.; Angelaki, D.

10.1101/189464 — neuroscience — Posted on 2017-09-17

734 COREMIC: a web-tool to search for a root-zone associated CORE MICrobiome

Rodrigues, R. R.; Rodgers, N.; Wu, X.; Williams, M. A.

10.1101/147009 — microbiology — Posted on 2017-09-17

735 Unique ATP-cone-driven allosteric regulation of ribonucleotide reductase via the radical-generating subunit

Rozman Grinberg, I.; Lundin, D.; Hasan, M.; Crona, M.; Jonna, V. R.; Loderer, C.; Sahlin, M.; Markova, N.; Borovok, I.; Berggren, G.; Hofer, A.; Logan, D. T.; Sjöberg, B.-M.

10.1101/190033 — biochemistry — Posted on 2017-09-17

736 Simulating the Idling Behavior of Escherichia Coli

Weidner, H.

10.1101/189878 — systems biology — Posted on 2017-09-17

737 On mechanisms of Transcranial Magnetic Stimulation (TMS): How brain state and baseline performance level determine behavioral effects of TMS

Silvanto, J.; Bona, S.; Cattaneo, Z.

10.1101/189969 — neuroscience — Posted on 2017-09-17

738 Indexing sensory plasticity: Evidence for distinct Predictive Coding and Hebbian Learning mechanisms in the cerebral cortex

Spriggs, M. J.; Sumner, R. L.; McMillan, R. L.; Moran, R. J.; Kirk, I. J.; Muthukumaraswamy, S. D.

10.1101/189944 — neuroscience — Posted on 2017-09-17

739 Isolation and identification of enteroviruses from sewage and sewage-contaminated water samples from Ibadan, Nigeria, 2012-2013.

Adeniji, J. A.; Adewale, A. O.; FALEYE, T. O. C.; Adewumi, M. O. O.

10.1101/189902 — microbiology — Posted on 2017-09-17

740 Mitotic systemic genomic instability in yeast

Sampaio, N. M. V.; Rodrigues Prause, A.; Ajith, V. P.; Gurol, T. M.; Chapman, M. J.; Malc, E. P.; Chakraborty, P.; Duarte, F. M.; Aguirre, G. M.; Tizei, P. A.; Pereira, G. A. G.; Mieczkowski, P. A.; Nishant, K. T.; Argueso, J. L.

10.1101/161869 — genetics — Posted on 2017-09-17

741 DeepLung: 3D Deep Convolutional Nets for Automated Pulmonary Nodule Detection and Classification

Zhu, W.; Liu, C.; Fan, W.; Xie, X.

10.1101/189928 — bioinformatics — Posted on 2017-09-17

742 What’s Up: an assessment of Causal Inference in the Perception of Verticality

de Winkel, K. N.; Katliar, M.; Diers, D.; Buelthoff, H. H.

10.1101/189985 — neuroscience — Posted on 2017-09-17

743 Functional Difference of Mitochondrial Genome and Its Association with Traits of Common Complex Diseases in Humans

Cho, Y. M.; Park, K. S.; Pak, Y.; Tanaka, M.; Lee, H. K.

10.1101/189845 — genetics — Posted on 2017-09-17

744 Insights into Origin and Evolution of α-proteobacterial Gene Transfer Agents

Shakya, M.; Soucy, S. M.; Zhaxybayeva, O.

10.1101/189738 — evolutionary biology — Posted on 2017-09-17

745 In-depth characterization of the cisplatin mutational signature in a human cell line and in esophageal and liver tumors

Boot, A.; Huang, M.; Ng, A. W. T.; Kawakami, Y.; Chayama, K.; Teh, B. T.; Nakagawa, H.; Rozen, S. G.

10.1101/189233 — cancer biology — Posted on 2017-09-17

746 Unique ATP-cone-driven allosteric regulation of ribonucleotide reductase via the radical-generating subunit

Rozman Grinberg, I.; Lundin, D.; Hasan, M.; Crona, M.; Jonna, V. R.; Loderer, C.; Sahlin, M.; Markova, N.; Borovok, I.; Berggren, G.; Hofer, A.; Logan, D. T.; Sjöberg, B.-M.

10.1101/190033 — biochemistry — Posted on 2017-09-17

747 Comparative and population genomics landscape of Phellinus noxius: a hypervariable fungus causing root rot in trees

Chung, C.-L.; Lee, T. J.; Akiba, M.; Lee, H.-H.; Kuo, T.-H.; Liu, D.; Ke, H.-M.; Yokoi, T.; Roa, M. B.; Lu, M. J.; Chang, Y.-Y.; Ann, P.-J.; Tsai, J.-N.; Chen, C.-Y.; Tzean, S.-S.; Ota, Y.; Hattori, T.; Sahashi, N.; Liou, R.-F.; Kikuchi, T.; Tsai, I. J.

10.1101/132712 — genomics — Posted on 2017-09-17

748 Inter-Chromosomal Linkage Reveals Errors in the 1000 Genomes Dataset

Mafessoni, F.; Prasad B, R.; Groop, L.; Hansson, O.; Pruefer, K.

10.1101/189670 — genomics — Posted on 2017-09-17

749 Fine-scale landscape genomics helps explain the slow spread of Wolbachia through the Aedes aegypti population in Cairns, Australia

Schmidt, T. L.; Filipovic, I.; Hoffmann, A. A.; Rasic, G.

10.1101/103598 — ecology — Posted on 2017-09-17

750 Applying expression profile similarity for discovery of patient-specific functional mutations

Meng, G.

10.1101/172015 — bioinformatics — Posted on 2017-09-17

751 Multivariate Pattern Connectivity

Anzellotti, S.; Caramazza, A.; Saxe, R.

10.1101/046151 — neuroscience — Posted on 2017-09-16

752 Normalization of the microbiota in patients after treatment for colonic lesions

Sze, M. A.; Baxter, N. T.; Ruffin, M. T.; Rogers, M. A.; Schloss, P. D.

10.1101/138222 — microbiology — Posted on 2017-09-16

753 Generalised Complementarity Analysis: identifying the most preciousplaces for the conservation of Species, Functional and PhylogeneticDiversity

Nipperess, D. A.

10.1101/189837 — ecology — Posted on 2017-09-16

754 Post-fire Quercus alba fitness in a stressed plant community

Milla, K.

10.1101/189829 — ecology — Posted on 2017-09-16

755 Dynamic and Depth Dependent Nanomechanical Properties of Dorsal Ruffles in Live Cells and Biopolymeric Hydrogels

Vyas, V.; Solomon, M.; D'Souza, G. G. M.; Huey, B. D.

10.1101/189852 — biophysics — Posted on 2017-09-16

756 Phylogeny-corrected identification of microbial gene families relevant to human gut colonization

Bradley, P. H.; Nayfach, S.; Pollard, K. S.

10.1101/189795 — bioinformatics — Posted on 2017-09-16

757 Evolution and Engineering of Allosteric Regulation in Protein Kinases

Pincus, D.; Pandey, J.; Creixell, P.; Resnekov, O.; Reynolds, K. A.

10.1101/189761 — systems biology — Posted on 2017-09-16

758 Ancient exapted transposable elements drive nuclear localisation of lncRNAs

Carlevaro-Fita, J.; Das, M.; Polidori, T.; Navarro, C.; Johnson, R.

10.1101/189753 — genomics — Posted on 2017-09-16

759 Leaf shedding as a bacterial defense in Arabidopsis cauline leaves

Patharkar, O. R.; Gassmann, W.; Walker, J. C.

10.1101/189720 — genetics — Posted on 2017-09-16

760 Large-Scale Analysis of Disease Pathways in the Human Interactome

Agrawal, M.; Zitnik, M.; Leskovec, J.

10.1101/189787 — bioinformatics — Posted on 2017-09-16

761 Visual pathways from the perspective of cost functions and multi-task deep neural networks

Scholte, H. S.; Losch, M. M.; Ramakrishnan, K.; de Haan, E.; Bohte, S.

10.1101/146472 — neuroscience — Posted on 2017-09-16

762 Anion-conducting channelrhodopsins with tuned spectra and modified kinetics engineered for optogenetic manipulation of behavior

Wietek, J.; Rodriguez-Rozada, S.; Tutas, J.; Tenedini, F.; Grimm, C.; Oertner, T.; Soba, P.; Hegemann, P.; Wiegert, J. S.

10.1101/156422 — neuroscience — Posted on 2017-09-16

763 A Comprehensive Cloud Framework for Accurate and Reliable Human Connectome Estimation and Meganalysis

Kiar, G.; Bridgeford, E.; Chandrashekhar, V.; Mhembere, D.; Burns, R.; Gray Roncal, W.; Vogelstein, J.

10.1101/188706 — neuroscience — Posted on 2017-09-16

764 Biomarker evaluation of plasma microRNA-122, high-mobility group box-1 and keratin-18 in acute gallstone disease

Th'ng, F.; Vliegenthart, B.; Lea, J. D.; Antoine, D. J.; Dear, J. W.; Mole, D. J.

10.1101/189589 — biochemistry — Posted on 2017-09-16

765 Speaker gaze increases information coupling between infant and adult brains

Leong, V.; Byrne, E.; Clackson, K.; Georgieva, S.; Lam, S.; Wass, S.

10.1101/108878 — neuroscience — Posted on 2017-09-16

766 Intrinsic Hippocampal-Caudate Interaction Correlates with Human Navigation

Kong, X.-Z.; Pu, Y.; Wang, X.; Xu, S.; Hao, X.; Zhen, Z.; Liu, J.

10.1101/116129 — neuroscience — Posted on 2017-09-16

767 Genome-wide Variants of Eurasian Facial Shape Differentiation and a prospective model of DNA based Face Prediction

Qiao, L.; Yang, Y.; Fu, P.; Hu, S.; Zhou, H.; Tan, J.; Lu, Y.; Lou, H.; Lu, D.; Wu, S.; Guo, J.; Peng, S.; Jin, L.; Guan, Y.; Wang, S.; Xu, S.; Tang, K.

10.1101/062950 — genetics — Posted on 2017-09-16

768 Sequences enriched in Alu repeats drive nuclear localization of long RNAs in human cells

Lubelsky, Y.; Ulitsky, I.

10.1101/189746 — molecular biology — Posted on 2017-09-16

769 IN VITRO AND IN VIVO CHARACTERISATION OF ISOLATES OF CRYPTOCOCCUS NEOFORMANS CAUSING MENINGITIS IN HIV-INFECTED AND UNINFECTED PATIENTS IN VIETNAM

Lam, T. T.; Toffaletti, D.; Tenor, J.; Giamberardino, C.; Sempowski, G.; Asfaw, Y.; Phan, T. H.; Duong, A. V.; Nguyen, T. M.; Nguyen, L. P. H.; Tran, C. T. H.; Ashton, P. M.; Beardsley, J.; Nguyen, C. V. V.; Thwaites, G. E.; Baker, S.; Perfect, J. R.; Day, J. N.

10.1101/189274 — microbiology — Posted on 2017-09-15

770 Reverse Engineering of Transcriptional Networks Uncovers Candidate Master Regulators Governing Neuropathology of Schizophrenia

Doostparast Torshizi, A.; Armoskus, C.; Zhang, S.; Zhang, H.; Evgrafov, O. V.; Knowles, J. A.; Duan, J.; Wang, K.

10.1101/133363 — neuroscience — Posted on 2017-09-15

771 Whole Genome Sequencing of Pharmacogenetic Drug Response in Racially and Ethnically Diverse Children with Asthma

Mak, A. C. Y.; White, M. J.; Szpiech, Z. A.; Eckalbar, W. L.; Oh, S. S.; Pino-Yanes, M.; Hu, D.; Goddard, P.; Huntsman, S.; Galanter, J.; Torgerson, D. G.; Chen Wu, A.; Himes, B. E.; Germer, S.; Vogel, J. M.; Bunting, K. L.; Eng, C.; Salazar, S.; Keys, K. L.; Liberto, J.; Nuckton, T. J.; Nguyen, T. A.; Kwok, P.-Y.; Levin, A. M.; Celedon, J. C.; Forno, E.; Hakonarson, H.; Sleiman, P. M.; Dahlin, A.; Tantisira, K. G.; Weiss, S. T.; Serebrisky, D.; Brigino-Buenaventura, E.; Farber, H. J.; Meade, K.; Lenoir, M. A.; Avila, P. C.; Sen, S.; Thyne, S. M.; Rodriguez-Cintron, W.; Winkler, C. A.; Moreno-

10.1101/128116 — genetics — Posted on 2017-09-15

772 Mutational burden of giant synaptic genes may be the cause of Alzheimer’s disease

Soheili-nezhad, S.; Zarei, M.

10.1101/189712 — neuroscience — Posted on 2017-09-15

773 Inter-Chromosomal Linkage Reveals Errors in the 1000 Genomes Dataset

Mafessoni, F.; Prasad B, R.; Groop, L.; Hansson, O.; Pruefer, k.

10.1101/189670 — genomics — Posted on 2017-09-15

774 A survey of DNA methylation polymorphism identifies environmentally responsive co-regulated networks of epigenetic variation in the human genome

Garg, P.; Joshi, R. S.; Watson, C.; Sharp, A. J.

10.1101/189704 — genomics — Posted on 2017-09-15

775 Inferring Continuous and Discrete Population Genetic Structure Across Space

Bradburd, G.; Coop, G.; Ralph, P.

10.1101/189688 — evolutionary biology — Posted on 2017-09-15

776 The drivers and consequences of unstable Plasmodium dynamics: A 26-year study of three malaria parasite species infecting a tropical lizard

Otero, L.; Schall, J. J.; Cruz, V.; Aaltonen, K.; Acevedo, M.

10.1101/189696 — ecology — Posted on 2017-09-15

777 A New Evidence of Lubrication Hypothesis on Nephila pilipes Spider Silk Spinning

Wu, H.-C.; Wu, S.-R.; Yang, J.-C.

10.1101/188771 — physiology — Posted on 2017-09-15

778 EIF4A3 associated splicing and nonsense mediated decay defined by a systems analysis with novel small molecule inhibitors

Mazloomian, A.; Araki, S.; Oohori, M.; Yap, D.; Nakao, S.; Nakanishi, A.; Shah, S.; Aparicio, S.

10.1101/189639 — genomics — Posted on 2017-09-15

779 Invariant errors reveal limitations in motor correction rather than constraints on error sensitivity

Kim, H.; Morehead, J. R.; Parvin, D.; Moazzezi, R.; Ivry, R.

10.1101/189597 — neuroscience — Posted on 2017-09-15

780 On information metrics for spatial coding

Souza, B.; Pavao, R.; Belchior, H.; Tort, A.

10.1101/189084 — neuroscience — Posted on 2017-09-15

781 Pre-post synaptic alignment through neuroligin tunes synaptic transmission efficiency

Hosy, E.; Choquet, D.; Bartol, T. M.; Sejnowski, T. J.; Thoumine, O.; Letellier, M.; Compans, B.; Haas, K.; Grillo-Bosch, D.; Sainlos, M.

10.1101/189407 — neuroscience — Posted on 2017-09-15

782 S1-seq assay for mapping processed DNA ends

Mimitou, E.; Keeney, S.

10.1101/189662 — molecular biology — Posted on 2017-09-15

783 plot2DO: a tool to assess the quality and distribution of genomic data

Chereji, R. V.

10.1101/189449 — genomics — Posted on 2017-09-15

784 High-throughput identification of RNA nuclear enrichment sequences

Shukla, C. J.; McCorkindale, A. L.; Gerhardinger, C.; Korthauer, K. D.; Cabili, M. N.; Shechner, D. M.; Irizarry, R. A.; Maass, P. G.; Rinn, J. L.

10.1101/189654 — genomics — Posted on 2017-09-15

785 Genetic Diversity Turns a New PAGE in Our Understanding of Complex Traits

Wojcik, G.; Graff, M.; Nishimura, K. K.; Tao, R.; Haessler, J.; Gignoux, C. R.; Highland, H. M.; Patel, Y. M.; Sorokin, E. P.; Avery, C. L.; Belbin, G. M.; Bien, S. A.; Cheng, I.; Hodonsky, C. J.; Huckins, L. M.; Jeff, J.; Justice, A. E.; Kocarnik, J. M.; Lim, U.; Lin, B. M.; Lu, Y.; Nelson, S. C.; Park, S.-S. L.; Preuss, M. H.; Richard, M. A.; Schurmann, C.; Setiawan, V. W.; Vahi, K.; Vishnu, A.; Verbanck, M.; Walker, R.; Young, K. L.; Zubair, N.; Ambite, J. L.; Boerwinkle, E.; Bottinger, E.; Bustamante, C. D.; Caberto, C.; Conomos, M. P.; Deelman, E.; Do, R.; Doheny, K.; Fernandez-Rhodes, L.

10.1101/188094 — genetics — Posted on 2017-09-15

786 Time-conditional properties of branches in coalescent gene trees

Platt, A.

10.1101/189209 — genetics — Posted on 2017-09-15

787 Telomere repeats induce domains of H3K27 methylation in Neurospora

Jamieson, K.; McNaught, K. J.; Ormsby, T.; Leggett, N. A.; Honda, S.; Selker, E. U.

10.1101/189258 — genetics — Posted on 2017-09-15

788 NF90/ILF3 is a transcription factor that promotes proliferation over differentiation by hierarchical regulation in K562 erythroleukemia cells

Wu, T.-H.; Shi, L.; Adrian, J.; Shi, M.; Nair, R. V.; Snyder, M. P.; Kao, P. N.

10.1101/189647 — genetics — Posted on 2017-09-15

789 HyDe: a Python package for genome-scale hybridization detection

Blischak, P. D.; Chifman, J.; Wolfe, A. D.; Kubatko, L. S.

10.1101/188037 — evolutionary biology — Posted on 2017-09-15

790 The cost of heat waves and droughts for global crop production

Mehrabi, Z.; Ramankutty, N.

10.1101/188151 — ecology — Posted on 2017-09-15

791 Proteomic Analysis Defines Kinase Taxonomies Specific For Subtypes Of Breast Cancer

Collins, K. A.; Stuhlmiller, T. J.; Zawistowski, J. S.; East, M. P.; Pham, T. T.; Hall, C. R.; Goulet, D. R.; Bevill, S. M.; Angus, S. P.; Velarde, S. H.; Sciaky, N.; Oprea, T. I.; Graves, L. M.; Johnson, G. L.; Gomez, S. M.

10.1101/122739 — cancer biology — Posted on 2017-09-15

792 PlasmidTron: assembling the cause of phenotypes from NGS data

Page, A. J.; Wailan, A.; Shao, Y.; Judge, K.; Dougan, G.; Klemm, E. J.; Thomson, N. R.; Keane, J. A.

10.1101/188920 — bioinformatics — Posted on 2017-09-15

793 Selenzyme: Enzyme selection tool for pathway design

Carbonell, P.; Wong, J.; Swainston, N.; Takano, E.; Turner, N. J.; Scrutton, N. S.; Kell, D. B.; Breitling, R.; Faulon, J.-L.

10.1101/188979 — bioinformatics — Posted on 2017-09-15

794 SnapperDB: A database solution for routine sequencing analysis of bacterial isolates

Dallman, T. J.; Ashton, P.; Schafer, U.; Jironkin, A.; Painset, A.; Shaaban, S.; Hartman, H.; Myers, R.; Underwood, A.; Jenkins, C.; Grant, K.

10.1101/189118 — bioinformatics — Posted on 2017-09-15

795 canvasXpress: A versatile interactive high-resolution scientific multi-panel visualization toolkit

Zhang, B.; Zhao, S.; Neuhaus, I.

10.1101/186213 — bioinformatics — Posted on 2017-09-15

796 Gaussian decomposition of high-resolution melt curve derivatives for measuring genome-editing efficiency

Zaboikin, M.; Freter, C.; Srinivasakumar, N.

10.1101/176719 — bioengineering — Posted on 2017-09-15

797 Biomarker evaluation of plasma microRNA-122, high-mobility group box-1 and keratin-18 in acute gallstone disease

Th'ng, F.; Vliegenthart, B.; Lea, J. D.; Antoine, D. J.; Dear, J. W.; Mole, D. J.

10.1101/189589 — biochemistry — Posted on 2017-09-15

798 An Algorithmic Information Calculus for Causal Discovery and Reprogramming Systems

Zenil, H.; Kiani, N. A.; Marabita, F.; Deng, Y.; Elias, S.; Schmidt, A.; Ball, G.; Tegner, J.

10.1101/185637 — systems biology — Posted on 2017-09-15

799 Adolescent Tuning Of Association Cortex In Human Structural Brain Networks

Vasa, F.; Seidlitz, J.; Romero-Garcia, R.; Whitaker, K. J.; Rosenthal, G.; Vertes, P. E.; Shinn, M.; Alexander-Bloch, A.; Fonagy, P.; Dolan, R. J.; Jones, P. B.; Goodyer, I. M.; The NSPN Consortium, ; Sporns, O.; Bullmore, E. T.

10.1101/126920 — neuroscience — Posted on 2017-09-15

800 ELMOD1 stimulates ARF6-GTP hydrolysis to stabilize apical structures in developing vestibular hair cells

Krey, J. F.; Dumont, R. A.; Wilmarth, P. A.; David, L. L.; Johnson, K. R.; Barr-Gillespie, P. G.

10.1101/189621 — neuroscience — Posted on 2017-09-15

801 Reparameterization of PAM50 expression identifies novel breast tumor dimensions and leads to discovery of a breast cancer susceptibility locus at 12q15

Madsen, M. J.; Knight, S.; Sweeney, C.; Factor, R.; Salama, M.; Rajamanickam, V.; Welm, B. E.; Arunachalam, S.; Jones, B.; Rowe, K.; Cessna, M.; Thomas, A.; Kushi, L. H.; Caan, B. J.; Bernard, P. S.; Camp, N. J.

10.1101/133397 — genetics — Posted on 2017-09-15

802 Negative frequency-dependent selection is frequently confounding

Brisson, D.

10.1101/113324 — evolutionary biology — Posted on 2017-09-15

803 Dynamics of the IFT Machinery at the Ciliary Tip

Chien, A.; Shih, S. M.; Bower, R.; Tritschler, D.; Porter, M. E.; Yildiz, A.

10.1101/156844 — cell biology — Posted on 2017-09-15

804 Dynamic changes in oligomeric complexes of UPR sensors induced by misfolded proteins in the ER

Sundaram, A.; Appathurai, S.; Mariappan, M.

10.1101/189605 — cell biology — Posted on 2017-09-15

805 Massive Mining of Publicly Available RNA-seq Data from Human and Mouse

Lachmann, A.; Torre, D.; Keenan, A. B.; Jagodnik, K. M.; Lee, H. J.; Silverstein, M. C.; Wang, L.; Ma'ayan, A.

10.1101/189092 — bioinformatics — Posted on 2017-09-15

806 Fungal derived 15-keto-prostaglandin E2 activates host peroxisome proliferator-activated receptor gamma (PPAR-γ) to promote C. neoformans growth during infection.

Evans, R. J.; Needs, S.; Aldrovandi, M.; Tifenbach, J.; Bielska, E.; Rubino, R.; Nicol, C.; May, R. C.; Krause, H.; O'Donnell, V.; Renshaw, S.; Johnston, S.

10.1101/113167 — microbiology — Posted on 2017-09-15

807 Heritability enrichment of specifically expressed genes identifies disease-relevant tissues and cell types

Finucane, H.; Reshef, Y.; Anttila, V.; Slowikowski, K.; Gusev, A.; Byrnes, A.; Gazal, S.; Loh, P.-R.; Lareau, C.; Shoresh, N.; Genovese, G.; Saunders, A.; Macosko, E.; Pollack, S.; The Brainstorm Consortium, ; Perry, J. R. B.; Buenrostro, J. D.; Bernstein, B. E.; Raychaudhuri, S.; McCarroll, S.; Neale, B.; Price, A.

10.1101/103069 — genetics — Posted on 2017-09-15

808 The separation of auditory experience and the temporal structure of MEG recorded brain activity

Allen, C.

10.1101/189480 — physiology — Posted on 2017-09-15

809 Failure to reactivate salient episodic information during indirect and direct tests of memory retrieval

Price, M. H.; Johnson, J. D.

10.1101/189522 — neuroscience — Posted on 2017-09-15

810 The brain compass: a perspective on how self-motion updates the head direction cell attractor

Laurens, J.; Angelaki, D.

10.1101/189464 — neuroscience — Posted on 2017-09-15

811 Adaptive coding for dynamic sensory inference

Mlynarski, W.; Hermundstad, A. M.

10.1101/189506 — neuroscience — Posted on 2017-09-15

812 Transcription factor co-binding patterns drive conserved regulatory outcomes

Diehl, A. G.; Boyle, A. P.

10.1101/189571 — genomics — Posted on 2017-09-15

813 CATaDa reveals global remodelling of chromatin accessibility during stem cell differentiationin vivo

Aughey, G. N.; Estacio Gomez, A.; Thomson, J.; Yin, H.; Southall, T. D.

10.1101/189456 — developmental biology — Posted on 2017-09-15

814 Redkmer: An assembly-free pipeline for the identification of abundant and specific X-chromosome target sequences for X-shredding by CRISPR endonucleases

Papathanos, P. A.; Windbichler, N.

10.1101/189431 — bioinformatics — Posted on 2017-09-15

815 Optimization-based synthesis of stochastic biocircuits with statistical specifications

Sakurai, Y.; Hori, Y.

10.1101/187823 — synthetic biology — Posted on 2017-09-15

816 Real-time DNA barcoding in a remote rainforest using nanopore sequencing

Pomerantz, A.; Penafiel, N.; Arteaga, A.; Bustamante, L.; Pichardo, F.; Coloma, L. A.; Barrio-Amoros, C. L.; Salazar-Valenzuela, D.; Prost, S.

10.1101/189159 — evolutionary biology — Posted on 2017-09-15

817 Deep learning of the splicing (epi)genetic code reveals a novel candidate mechanism linking histone modifications to ESC fate decision

Xu, Y.; Wang, Y.; Luo, J.; Zhao, W.; Zhou, X.

10.1101/189183 — bioinformatics — Posted on 2017-09-15

818 A novel mechanism for volitional locomotion in larval zebrafish

Ehrlich, D. E.; Schoppik, D.

10.1101/189191 — neuroscience — Posted on 2017-09-15

819 Sensory noise increases metacognitive efficiency

Bang, J. W.; Shekhar, M.; Rahnev, D.

10.1101/189399 — neuroscience — Posted on 2017-09-15

820 Multidimensionality of plant defenses and herbivore niches: implications for eco-evolutionary dynamics

Loeuille, N.; Hauzy, C.

10.1101/070250 — ecology — Posted on 2017-09-15

821 ATR is a multifunctional regulator of male mouse meiosis

Widger, A.; Mahadevaiah, S. K.; Lange, J.; ElInati, E.; Zohren, J.; Hirota, T.; Stanzione, M.; Ojarikre, O.; Maciulyte, V.; de Rooij, D.; Toth, A.; Keeney, S.; Turner, J. M.

10.1101/172106 — cell biology — Posted on 2017-09-15

822 Attentional fluctuations induce shared variability in macaque primary visual cortex

Denfield, G. H.; Ecker, A. S.; Shinn, T. J.; Bethge, M.; Tolias, A. S.

10.1101/189282 — neuroscience — Posted on 2017-09-15

823 Repeated performance in problem-solving tasks attenuates human cortical responses

Meshulam, M.; Golan, T.; Harel, M.; Groppe, D.; Keller, C.; Megevand, P.; Mehta, A.; Malach, R.

10.1101/189217 — neuroscience — Posted on 2017-09-15

824 N VITRO AND IN VIVO CHARACTERISATION OF ISOLATES OF CRYPTOCOCCUS NEOFORMANS CAUSING MENINGITIS IN HIV-INFECTED AND UNINFECTED PATIENTS IN VIETNAM

10.1101/189274 — microbiology — Posted on 2017-09-15

825 Genome-wide Variants of Eurasian Facial Shape Differentiation and a prospective model of DNA based Face Prediction

Qiao, L.; Yang, Y.; Fu, P.; Hu, S.; Zhou, H.; Peng, S.; Tan, J.; Lu, Y.; Lou, H.; Lu, D.; Wu, S.; Guo, J.; Jin, L.; Guan, Y.; Wang, S.; Xu, S.; Tang, K.

10.1101/189332 — genetics — Posted on 2017-09-15

826 A global Brassica pest and a sympatric cryptic ally, Plutella australiana (Lepidoptera: Plutellidae), show strong divergence despite the capacity to hybridize

Perry, K. D.; Baker, G. J.; Powis, K. J.; Kent, J. K.; Ward, C. M.; Baxter, S. W.

10.1101/189266 — genetics — Posted on 2017-09-15

827 Molecular evidence for the early evolution of photosynthetic water oxidation

Cardona, T.; Sanchez-Baracaldo, P.; Rutherford, A. W.; Larkum, A.

10.1101/109447 — evolutionary biology — Posted on 2017-09-15

828 Detecting and correcting for bias in Mendelian randomization analyses using gene-by-environment interactions

Spiller, W.; Slichter, D.; Bowden, J.; Davey Smith, G.

10.1101/187849 — epidemiology — Posted on 2017-09-15

829 seq-seq-pan: Building a computational pan-genome data structure on whole genome alignment

Jandrasits, C.; Dabrowski, P. W.; Fuchs, S.; Renard, B. Y.

10.1101/188904 — bioinformatics — Posted on 2017-09-15

830 SodaPop: A computational suite for simulating the dynamics of asexual populations

Gauthier, L.; Di Franco, R.; Serohijos, A.

10.1101/189142 — bioinformatics — Posted on 2017-09-15

831 PartsGenie: an integrated tool for optimising and sharing synthetic biology parts

Swainston, N.; Dunstan, M.; Jervis, A. J.; Robinson, C. J.; Carbonell, P.; Williams, A. R.; Faulon, J.-L.; Scrutton, N. S.; Kell, D. B.

10.1101/189357 — synthetic biology — Posted on 2017-09-15

832 SCGN Administration prevents Insulin Resistance and Diabetic Complications in High-Fat Diet Fed Animals

Sharma, A. K.; Khandelwal, R.; Chadalawada, S.; Ram, N. S.; Raj, A.; Mahesh Kumar, J.; Sharma, Y.

10.1101/189324 — physiology — Posted on 2017-09-15

833 Atomic structure of the mitochondrial inner membrane AAA+ protease YME1 reveals the mechanism of substrate processing

Puchades, C.; Rampello, A. J.; Shin, M.; Giuliano, C. J.; Wiseman, R. L.; Glynn, S. E.; Lander, G. C.

10.1101/189316 — molecular biology — Posted on 2017-09-15

834 Polygenic Link Between Blood Lipids And Amyotrophic Lateral Sclerosis

Chen, X.; Yazdani, S.; Piehl, F.; Magnusson, P. K. E.; Fang, F.

10.1101/138156 — genetics — Posted on 2017-09-15

835 The Microbiomes of Pancreatic Tissue in Pancreatic Cancer and Non-Cancer Subjects

del Castillo, E.; Meier, R.; Koestler, D. C.; Chen, T.; Paster, B. J.; Charpentier, K. P.; Kelsey, K. T.; Izard, J.; Michaud, D. S.

10.1101/189043 — epidemiology — Posted on 2017-09-15

836 fingertipsR: an R package for accessing population health information in England

Fox, S.; Flowers, J.; Thelwall, S.; Flint, D.; Hain, D.

10.1101/189167 — epidemiology — Posted on 2017-09-15

837 Detecting and correcting for bias in Mendelian randomization analyses using gene-by-environment interactions

Spiller, W.; Slichter, D.; Bowden, J.; Davey Smith, G.

10.1101/187849 — epidemiology — Posted on 2017-09-15

838 Ceasing the use of the highest priority critically important antimicrobials does not adversely affect production, health or welfare parameters in dairy cows

Turner, A.; Tisdall, D.; Barrett, D. C.; Wood, S.; Dowsey, A.; Reyher, K. K.

10.1101/186973 — epidemiology — Posted on 2017-09-15

839 Evaluation of Metrics for Benchmarking Antimicrobial Use in the United Kingdom Dairy Industry

Mills, H.; Turner, A.; Morgans, L.; Massey, J.; Schubert, H.; Rees, G.; Broadfoot, F.; Barrett, D. C.; Dowsey, A.; Reyher, K. K.

10.1101/186593 — epidemiology — Posted on 2017-09-15

840 The Early Diagnosis in Lung Cancer by the Detection of Circulating Tumor DNA

Tian, G.; Li, X.; Xie, Y.; Xu, F.; Yu, D.; Cao, F.; Wang, X.; Yu, F.; Zhong, W.; Lu, S.; Tu, X.; Yao, X.; He, J.; Liu, C.

10.1101/189340 — cancer biology — Posted on 2017-09-15

841 In silico mechanobiochemical modeling of morphogenesis in cell monolayers

Yuan, H.; Marzban, B.

10.1101/189175 — biophysics — Posted on 2017-09-15

842 Real-time observation of flexible domain movements in Cas9

Osuka, S.; Isomura, K.; Kajimoto, S.; Komori, T.; Nishimasu, H.; Shima, T.; Nureki, O.; Uemura, S.

10.1101/122069 — biophysics — Posted on 2017-09-15

843 Spatial cytoskeleton organization supports targeted intracellular transport

Hafner, A. E.; Rieger, H.

10.1101/189365 — biophysics — Posted on 2017-09-15

844 Two sides of the same coin: monetary incentives concurrently improve and bias confidence judgments.

Lebreton, M.; Langdon, S.; Slieker, M. J.; Nooitgedacht, J. S.; Goudriaan, A. E.; Denys, D.; van Holst, R. J.; Luigjes, J.

10.1101/099382 — animal behavior and cognition — Posted on 2017-09-15

845 Low Perfusion Compartments in Glioblastoma Quantified by Advanced Magnetic Resonance Imaging: Correlation with Patient Survival

Li, C.; Yan, J.-L.; Torheim, T.; McLean, M. A.; Boonzaier, N. R.; Huang, Y.; Yuan, J.; Van Dijken, B. R. J.; Matys, T.; Markowetz, F.; Price, S. J.

10.1101/180521 — neuroscience — Posted on 2017-09-14

846 Intratumoral Heterogeneity of Tumor Infiltration of Glioblastoma Revealed by Joint Histogram Analysis of Diffusion Tensor Imaging

Li, C.; Wang, S.; Yan, J.-L.; Piper, R. J.; Liu, H.; Torheim, T.; Kim, H.; Boonzaier, N. R.; Sinha, R.; Matys, T.; Markowetz, F.; Price, S. J.

10.1101/187450 — neuroscience — Posted on 2017-09-14

847 Pathways of DNA unlinking: A story of stepwise simplification

Stolz, R.; Yoshida, M.; Brasher, R.; Flanner, M.; Ishihara, K.; Sherratt, D. J.; Shimokawa, K.; Vazquez, M.

10.1101/188722 — bioinformatics — Posted on 2017-09-14

848 Bayesian Inference of Species Networks from Multilocus Sequence Data

Zhang, C.; Ogilvie, H. A.; Drummond, A. J.; Stadler, T.

10.1101/124982 — evolutionary biology — Posted on 2017-09-14

849 Hsf1 phosphorylation generates cell-to-cell variation in Hsp90 levels and promotes phenotypic plasticity

Zheng, X.; Beyzavi, A.; Krakowiak, J.; Patel, N.; Khalil, A. S.; Pincus, D.

10.1101/185934 — systems biology — Posted on 2017-09-14

850 Pleiotropy in enhancer function is encoded through diverse genetic architectures

Preger-Ben Noon, E.; Sabaris, G.; Ortiz, D.; Sager, J.; Liebowitz, A.; Stern, D. L.; Frankel, N.

10.1101/188532 — genetics — Posted on 2017-09-14

851 Complex polymorphisms in endocytosis genes suggest alpha-cyclodextrin against metastases in breast cancer

Wittkowski, K. M.; Dadurian, C.; Seybold, M. P.; Kim, H. S.; Hoshino, A.; Lyden, D.

10.1101/152405 — cancer biology — Posted on 2017-09-14

852 Systematic Mendelian randomization framework elucidates hundreds of genetic loci which may influence disease through changes in DNA methylation levels

Richardson, T. G.; Haycock, P. C.; Zheng, J.; Timpson, N. J.; Gaunt, T. R.; Davey Smith, G.; Relton, C. L.; Hemani, G.

10.1101/189076 — genetics — Posted on 2017-09-14

853 Inferring the selection window in antimicrobial resistance using deep mutational scanning data and biophysics-based fitness models

Dasmeh, P.; Ton, A.-T.; Quach, C.; Serohijos, A.

10.1101/189019 — evolutionary biology — Posted on 2017-09-14

854 Many si/shRNAs can kill cancer cells by targeting multiple survival genes through an off-target mechanism

Putzbach, W.; Gao, Q. Q.; Patel, M.; van Dongen, S.; Haluck-Kangas, A.; Sarshad, A. A.; Bartom, E.; Kim, K.-Y. A.; Scholtens, D. M.; Hafner, M.; Zhao, J. C.; Murmann, A. E.; Peter, M. E.

10.1101/141952 — cancer biology — Posted on 2017-09-14

855 Global determinants of navigation ability

Coutrot, A.; Silva, R.; Manley, E.; de Cothi, W.; Sami, S.; Bohbot, V.; Wiener, J.; Hölscher, C.; Dalton, R. C.; Hornberger, M.; Spiers, H.

10.1101/188870 — neuroscience — Posted on 2017-09-14

856 Reactive astrocytes - comprehending when neurons play 4’33”

Volman, V.; Bazhenov, M.

10.1101/189134 — neuroscience — Posted on 2017-09-14

857 Formation of functional, non-amyloidogenic fibres by recombinant Bacillus subtilis TasA

Erskine, E.; Morris, R.; Schor, M.; Earl, C.; Gillespie, R. M. C.; Bromley, K.; Sukhodub, T.; Clark, L.; Fyfe, P.; Serpell, L.; Stanley-Wall, N.; MacPhee, C. E.

10.1101/188995 — microbiology — Posted on 2017-09-14

858 Biological communities as interacting compartments: thermodynamic properties and diversity indices

Meloni, F.; Nakamura, G. M.; Martinez, A. S.

10.1101/188813 — ecology — Posted on 2017-09-14

859 Massive Mining of Publicly Available RNA-seq Data from Human and Mouse

Lachmann, A.; Torre, D.; Keenan, A. B.; Jagodnik, K. M.; Lee, H. J.; Silverstein, M. C.; Wang, L.; Ma'ayan, A.

10.1101/189092 — bioinformatics — Posted on 2017-09-14

860 FlashFry: a fast and flexible tool for large-scale CRISPR target design

McKenna, A.; Shendure, J.

10.1101/189068 — bioinformatics — Posted on 2017-09-14

861 Phytophthora palmivora establishes tissue-specific intracellular infection structures in the earliest divergent land plant lineage

Carella, P.; Gogleva, A.; Tomaselli, M.; Alfs, C.; Schornack, S.

10.1101/188912 — plant biology — Posted on 2017-09-14

862 Associations between memory traces emerge in a generic neural circuit model through STDP

Pokorny, C.; Ison, M. J.; Rao, A.; Legenstein, R.; Papadimitriou, C.; Maass, W.

10.1101/188938 — neuroscience — Posted on 2017-09-14

863 Assessing robustness against potential publication bias in coordinate based fMRI meta-analyses using the Fail-Safe N

Acar, F.; Seurinck, R.; Eickhoff, S. B.; Moerkerke, B.

10.1101/189001 — neuroscience — Posted on 2017-09-14

864 Conservation of preparatory neural events regardless of how movement is initiated

Lara, A. H.; Elsayed, G. F.; Cunningham, J.; Churchland, M. M.

10.1101/189035 — neuroscience — Posted on 2017-09-14

865 Global connectivity of the frontoparietal cognitive control network is related to depression symptoms in undiagnosed individuals

Schultz, D. H.; Ito, T.; Solomyak, L. I.; Chen, R. H.; Mill, R. D.; Kulkarni, K. R.; Cole, M. W.

10.1101/185306 — neuroscience — Posted on 2017-09-14

Koen, J. D.; Horne, E. D.; Hauck, N.; Rugg, M. D.

10.1101/188664 — neuroscience — Posted on 2017-09-14

867 Intratumoral Heterogeneity of Tumor Infiltration of Glioblastoma Revealed by Joint Histogram Analysis of Diffusion Tensor Imaging

Li, C.; Wang, S.; Yan, J.-L.; Piper, R. J.; Liu, H.; Torheim, T.; Kim, H.; Boonzaier, N. R.; Sinha, R.; Matys, T.; Markowetz, F.; Price, S. J.

10.1101/187450 — neuroscience — Posted on 2017-09-14

868 CRISPR-based Herd Immunity Limits Phage Epidemics in Bacterial Populations

Payne, P.; Geyrhofer, L.; Barton, N. H.; Bollback, J. P.

10.1101/181487 — microbiology — Posted on 2017-09-14

869 Dose-dependency of heterochromatin domains reveals subtelomeric structuration in budding yeast

Hocher, A.; Ruault, M.; Garnier, M.; Descrimes, M.; Morillon, A.; Taddei, A.

10.1101/187138 — genomics — Posted on 2017-09-14

870 Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection

Chun, Y. J.; Chen, J.; Villani, A.-C.; Subramaniam, M.; Gate, R. E.; Bhangale, T.; Lee, M. N.; Raj, T.; Raychowdhury, R.; Li, W.; Rogel, N.; Imboywa, S. H.; Chipendo, P. I.; McCabe, C.; Lee, M. H.; Frohlich, I. Y.; Stranger, B. E.; De Jager, P. L.; Regev, A.; Behrens, T.; Hacohen, N.

10.1101/188961 — genomics — Posted on 2017-09-14

871 Measuring the reproducibility and quality of Hi-C data

Yardimci, G.; Ozadam, H.; Sauria, M. E. G.; Ursu, O.; Yan, K.-K.; Yang, T.; Chakraborty, A.; Kaul, A.; Lajoie, B. R.; Song, F.; Zhan, Y.; Ay, F.; Gerstein, M.; Kundaje, A.; Li, Q.; Taylor, J.; Yue, F.; Dekker, J.; Noble, W. S.

10.1101/188755 — genomics — Posted on 2017-09-14

872 Systematic Mendelian randomization framework elucidates hundreds of genetic loci which may influence disease through changes in DNA methylation levels

Richardson, T. G.; Haycock, P. C.; Zheng, J.; Timpson, N. J.; Gaunt, T. R.; Davey Smith, G.; Relton, C. L.; Hemani, G.

10.1101/189076 — genetics — Posted on 2017-09-14

873 Inferring the selection window in antimicrobial resistance using deep mutational scanning data and biophysics-based fitness models

Dasmeh, P.; Ton, A.-T.; Quach, C.; Serohijos, A.

10.1101/189019 — evolutionary biology — Posted on 2017-09-14

874 Biological communities as interacting compartments: thermodynamic properties and diversity indices

Meloni, F.; Nakamura, G. M.; Martinez, A. S.

10.1101/188813 — ecology — Posted on 2017-09-14

875 Single-molecule DNA unzipping reveals asymmetric modulation of the transcription factor Egr-1 by its binding site sequence and context

Rudnizky, S.; Khamis, H.; Malik, O.; Squires, A.; Meller, A.; Melamed, P.; Kaplan, A.

10.1101/188458 — biophysics — Posted on 2017-09-14

876 Systematic mapping of the free energy landscapes of a growing immunoglobulin domain identifies a kinetic intermediate associated with co-translational proline isomerization

Waudby, C. A.; Karyadi, M.-E.; Wlodarski, T.; Cassaignau, A. M. E.; Chan, S.; Schmidt-Engler, J. M.; Wentink, A. S.; Camilloni, C.; Vendruscolo, M.; Cabrita, L. D.; Christodoulou, J.

10.1101/189050 — biophysics — Posted on 2017-09-14

877 Molecular characterization of breast and lung tumors by integration of multiple data types with sparse-factor analysis

Bismeijer, T.; Canisius, S.; Wessels, L.

10.1101/183582 — bioinformatics — Posted on 2017-09-14

878 seq-seq-pan: Building a computational pan-genome data structure on whole genome alignment

Jandrasits, C.; Dabrowski, P. W.; Fuchs, S.; Renard, B. Y.

10.1101/188904 — bioinformatics — Posted on 2017-09-14

879 GCalignR: An R package for aligning Gas-Chromatography data

Ottensmann, M.; Stoffel, M. A.; Nichols, H. J.; Hoffman, J. I.

10.1101/110494 — animal behavior and cognition — Posted on 2017-09-14

880 Collective mechanical adaptation of honeybee swarms

Peleg, O.; Peters, J. M.; Salcedo, M. K.; Mahadevan, L.

10.1101/188953 — animal behavior and cognition — Posted on 2017-09-14

881 Cholecystokinin release triggered by presynaptic NMDA receptors produces LTP and sound-sound associative memory formation

Li, X.; Xi, C.; Wong, Y. T.; Wang, H.; Feng, H.; Zheng, X.; Feng, J.; Baibado, J. T.; Jesky, R.; Peng, Y.; Wang, Z.; Xie, H.; Sun, W.; Zhang, Z.; Zhang, X.; He, L.; Zhang, N.; Zhang, Z.; Tang, P.; Su, J.-F.; Hu, L.-L.; Liu, Q.; He, X.-B.; Tan, A.; Sun, X.; Li, M.; Wong, K.; Wang, X.; Guo, Y. P.; Xu, F.; He, J.

10.1101/188839 — neuroscience — Posted on 2017-09-14

882 Generation and validation of homozygous fluorescent knock-in cells using genome editing

Koch, B.; Nijmeijer, B.; Kueblbeck, M.; Cai, Y.; Walther, N.; Ellenberg, J.

10.1101/188847 — molecular biology — Posted on 2017-09-14

883 A method for allocating low-coverage sequencing resources by targeting haplotypes rather than individuals

Ros-Freixedes, R.; Gonen, S.; Gorjanc, G.; Hickey, J. M.

10.1101/188896 — genomics — Posted on 2017-09-14

884 Development and validation of a new walking pace function using crowd-sourced GPS data

Pharoah, P.

10.1101/188417 — physiology — Posted on 2017-09-14

885 Continued Evaluation of Environmental Stimuli in the Absence of Consciousness suggests the Human Brain is Standing Sentinel during Sleep

Blume, C.; del Giudice, R.; Wislowska, M.; Heib, D. P. J.; Schabus, M.

10.1101/187195 — neuroscience — Posted on 2017-09-14

886 Cortical Connectivity In A Macaque Model Of Congenital Blindness

Magrou, L.; Barone, P.; Markov, N. T.; Killackey, H.; Giroud, P.; Berland, M.; Knoblauch, K.; Dehay, C.; Kennedy, H.

10.1101/188888 — neuroscience — Posted on 2017-09-14

887 Global determinants of navigation ability

Coutrot, A.; Silva, R.; Manley, E.; de Cothi, W.; Sami, S.; Bohbot, V.; Wiener, J.; Hölscher, C.; Dalton, R. C.; Hornberger, M.; Spiers, H.

10.1101/188870 — neuroscience — Posted on 2017-09-14

888 Quantitative mapping of fluorescently tagged cellular proteins using FCS-calibrated four dimensional imaging

Politi, A. Z.; Cai, Y.; Walther, N.; Hossain, M. J.; Koch, B.; Wachsmuth, M.; Ellenberg, J.

10.1101/188862 — molecular biology — Posted on 2017-09-14

889 Trait evolution with jumps: illusionary normality

Bartoszek, K.

10.1101/188854 — evolutionary biology — Posted on 2017-09-14

890 Developing a 3- to 6-state EEG-based brain-computer interface for a robotic manipulator control

Mishchenko, Y.; Kaya, M.; Ozbay, E.; Yanar, H.

10.1101/171025 — bioinformatics — Posted on 2017-09-14

891 Pathways of DNA unlinking: A story of stepwise simplification

Stolz, R.; Yoshida, M.; Brasher, R.; Flanner, M.; Ishihara, K.; Sherratt, D. J.; Shimokawa, K.; Vazquez, M.

10.1101/188722 — bioinformatics — Posted on 2017-09-14

892 A whole genome analysis of the red-crowned crane provides insight into avian longevity

Lee, H.; Chung, O.; Cho, Y. S.; Jho, S.; Jun, J.; Weber, J. A.; Kim, J.; Lim, J.; Edwards, J. S.; Paek, W. K.; Bhak, J.

10.1101/188656 — bioinformatics — Posted on 2017-09-14

893 Compressive Temporal Summation in Human Visual Cortex

Zhou, J.; Benson, N. C.; Kay, K.; Winawer, J.

10.1101/157628 — neuroscience — Posted on 2017-09-14

894 Spatially dispersed synapses yield sharply-tuned place cell responses through dendritic spike initiation

Basak, R.; Narayanan, R.

10.1101/157453 — neuroscience — Posted on 2017-09-14

895 Selection On Morphological Traits And Fluctuating Asymmetry By A Fungal Parasite In The Yellow Dung Fly

Blanckenhorn, W. U.

10.1101/136325 — evolutionary biology — Posted on 2017-09-14

896 The consequences of polyandry for sibship structures, distributions of relationships and relatedness, and potential for inbreeding in a wild population

Germain, R. R.; Arcese, P.; Reid, J. M.

10.1101/145987 — evolutionary biology — Posted on 2017-09-14

897 Glioma CpG Island Methylator Phenotype (G-CIMP): Biological and Clinical Implications

Malta, T. M.; Souza, C. F.; Sabedot, T. S.; Silva, T. C.; Mosella, M. Q. S.; Kalkanis, S. N.; Snyder, J.; Castro, A. V. B.; Noushmehr, H.

10.1101/169680 — cancer biology — Posted on 2017-09-14

898 No evidence that more physically attractive women have higher estradiol or progesterone

Jones, B. C.; Hahn, A. C.; Fisher, C. I.; Wang, H.; Kandrik, M.; Han, C.; Lee, A. J.; Holzleitner, I. J.; DeBruine, L. M.

10.1101/136515 — animal behavior and cognition — Posted on 2017-09-14

899 A Comprehensive Cloud Framework for Accurate and Reliable Human Connectome Estimation and Meganalysis

Kiar, G.; Bridgeford, E.; Chandrashekhar, V.; Mhembere, D.; Burns, R.; Gray Roncal, W.; Vogelstein, J.

10.1101/188706 — neuroscience — Posted on 2017-09-14

900 Single synapses control mossy cell firing

Drakew, A.; Maier, U.; Tippmann, A.; Frotscher, M.

10.1101/188789 — neuroscience — Posted on 2017-09-14

901 Allosteric effector ppGpp potentiates the inhibition of transcript initiation by DksA

Molodtsov, V.; Sineva, E.; Zhang, L.; Huang, X.; Cashel, M.; Ades, S. E.; Murakami, K.

10.1101/188680 — molecular biology — Posted on 2017-09-14

902 Data quality of Whole Genome Bisulfite Sequencing on Illumina platforms

Raine, A.; Liljedahl, U.; Nordlund, J.

10.1101/188797 — genomics — Posted on 2017-09-14

903 Four fundamental processes of community assembly

Ladau, J.; Schwager, S. J.

10.1101/188607 — ecology — Posted on 2017-09-14

904 Cell size and growth rate are modulated by TORC2-dependent signals

Lucena, R.; Alcaide-Gavilan, M.; Schubert, K.; He, M.; Domnauer, M.; Marquer, C.; Kellogg, D.

10.1101/188698 — cell biology — Posted on 2017-09-14

905 Efficacy of SHP2 phosphatase inhibition in cancers with nucleotide-cycling oncogenic RAS, RAS-GTP dependent oncogenic BRAF and NF1 loss

Nichols, R. J.; Haderk, F.; Stahlhut, C.; Schulze, C. J.; Hemmati, G.; Wildes, D.; Tzitzilonis, C.; Mordec, K.; Marquez, A.; Romero, J.; Hsieh, D.; Kiss, G.; Koltun, E. S.; Gill, A. L.; Singh, M.; Goldsmith, M. A.; Smith, J. A. M.; Bivona, T. G.

10.1101/188730 — cancer biology — Posted on 2017-09-14

906 Organisation of feed-forward loop motifs reveals architectural principles in natural and engineered networks

Gorochowski, T. E.; Grierson, C. S.; di Bernardo, M.

10.1101/188821 — bioinformatics — Posted on 2017-09-14

907 Controller for microfluidic large-scale integration

White, J.; Streets, A. M.

10.1101/188615 — bioengineering — Posted on 2017-09-14

908 Integrated analysis of DSB patterns reveals precisely DSB formation mechanisms following replication fork collapse

Zhu, Y.; Biernacka, A.; Pardo, B.; Forey, R.; Dojer, N.; Nde, J.; Fongang, B.; Yousefi, R.; Mitra, A.; Li, J.; Skrzypczak, M.; Kudlicki, A.; Pasero, P.; Ginalski, K.; Rowicka, M.

10.1101/171439 — genomics — Posted on 2017-09-14

909 Minor allele frequency thresholds strongly affect population structure inference with genomic datasets

Linck, E. B.; Battey, C. J.

10.1101/188623 — genomics — Posted on 2017-09-14

910 Selective and mechanistic sources of recurrent rearrangements across the cancer genome

Wala, J. A.; Shapira, O.; Li, Y.; Craft, D.; Schumacher, S. E.; Imielinski, M.; Haber, J. E.; Roberts, N.; Yao, X.; Stewart, C.; Zhang, C.-Z.; Tubio, J.; Ju, Y. S.; Campbell, P.; Weischenfeldt, J.; Beroukhim, R.; PCAWG-Structural Variation Working Group, ; the PCAWG Network,

10.1101/187609 — cancer biology — Posted on 2017-09-14

911 xenoGI: reconstructing the history of genomic island insertions in clades of closely related bacteria

Bush, E. C.; Clark, A. E.; DeRanek, C. A.; Eng, A.; Forman, J.; Heath, K.; Lee, A. B.; Stoebel, D. M.; Wang, Z.; Wilber, M.; Wu, H.

10.1101/188599 — bioinformatics — Posted on 2017-09-14

912 accuMUlate: A mutation caller designed for mutation accumulation experiments

Winter, D.; Wu, S. H.; Howell, A. A.; Azevedo, R.; Zufall, R.; Cartwright, R.

10.1101/182956 — bioinformatics — Posted on 2017-09-14

913 Dissociable Roles of Ventromedial Prefrontal Cortex and Anterior Cingulate in Subjective Valuation of Prospective Effort

Hogan, P. S.; Galaro, J. K.; Chib, V. S.

10.1101/079467 — neuroscience — Posted on 2017-09-13

914 Developmental diversification of cortical inhibitory interneurons.

Mayer, C.; Hafemeister, C.; Bandler, R. C.; Machold, R.; Allaway, K.; Jaglin, X.; Brito, R. B.; Butler, A.; Fishell, G.; Satija, R.

10.1101/105312 — neuroscience — Posted on 2017-09-13

915 Edge Detection of Cryptic Lamellipodia Assisted by Deep Learning

Wang, C.; Kang, S.; Kim, E.; Zhang, X.; Choi, H. J.; Choi, A.; Lee, K.

10.1101/181263 — bioinformatics — Posted on 2017-09-13

916 Cross-species functional diversity within the PIN auxin efflux protein family

O'Connor, D. L.; Elton, S.; Ticchiarelli, F.; Hsia, M. M.; Vogel, J.; Leyser, O.

10.1101/089854 — plant biology — Posted on 2017-09-13

917 Development and validation of a new walking pace function using crowd-sourced GPS data

Pharoah, P.

10.1101/188417 — physiology — Posted on 2017-09-13

918 Insights into the molecular changes associated with postnatal human brain development: an integrated transcriptomics and proteomics study

Breen, M. S.; Ozcan, S.; Ramsey, J. M.; Rustogi, N.; Gottshalk, M. G.; Webster, M. J.; Weickert, C. S.; Buxbaum, J. D.; Bahn, S.

10.1101/188565 — neuroscience — Posted on 2017-09-13

919 MASCOT: Parameter and state inference under the marginal structured coalescent approximation

Mueller, N. F.; Rasmussen, D. A.; Stadler, T.

10.1101/188516 — evolutionary biology — Posted on 2017-09-13

920 Stochastic dispersal increases the rate of upstream spread: a case study with green crabs on the northwest Atlantic coast

Gharouni, A.; Barbeau, M. A.; Chasse, J.; Wang, L.; Watmough, J.

10.1101/188409 — ecology — Posted on 2017-09-13

921 Lipid droplet and peroxisome biogenesis occur at the same ER subdomains.

Joshi, A. S.; Choudhary, V.; Levine, T. P.; Prinz, W. A.

10.1101/188433 — cell biology — Posted on 2017-09-13

922 Characterizing highly dynamic conformational states: the transcription bubble in RNAP-promoter open complex as an example

Lerner, E.; Weiss, S.

10.1101/188524 — biophysics — Posted on 2017-09-13

923 clusterSeq: methods for identifying co-expression in high-throughput sequencing data

Hardcastle, T. J.; Papatheodorou, I.

10.1101/188581 — bioinformatics — Posted on 2017-09-13

924 Motif signatures of transcribed enhancers

Kleftogiannis, D.; Ashoor, H.; Zarokanellos, N.; Bajic, V. B.

10.1101/188557 — bioinformatics — Posted on 2017-09-13

925 Microcircuitry of Performance Monitoring

Sajad, A.; Godlove, D. C.; Schall, J. D.

10.1101/187989 — neuroscience — Posted on 2017-09-13

926 Electrical synapses between inhibitory neurons shape the responses of principal neurons to transient inputs in the thalamus

Pham, T.; Haas, J.

10.1101/186585 — neuroscience — Posted on 2017-09-13

927 Paleochronic reversion in Psophocarpus, the decompression function in floral anatomic fields

Benya, E. G. F.

10.1101/070540 — plant biology — Posted on 2017-09-13

928 Effect size and statistical power in the rodent fear conditioning literature - a systematic review

Carneiro, C. F. D.; Moulin, T. C.; Macleod, M. R.; Amaral, O. B.

10.1101/116202 — neuroscience — Posted on 2017-09-13

929 The CGRP receptor antagonist BIBN4096 inhibits prolonged meningeal afferent activation evoked by brief local K+ stimulation but not cortical spreading depression-induced afferent sensitization

Zhao, J.; Levy, D.

10.1101/151464 — neuroscience — Posted on 2017-09-13

930 Large scale variation in the rate of de novo mutation, base composition, divergence and diversity in humans

Smith, T.; Arndt, P.; Eyre-Walker, A.

10.1101/110452 — genomics — Posted on 2017-09-13

931 Dose-response surface fits to drought and nitrogen limitation applied together allow mapping of loci that exhibit nonlinear responses

Chang, M. M.; Nail, D. A.; Kazic, T.; Simmons, S. J.; Stapleton, A. E.

10.1101/186791 — genetics — Posted on 2017-09-13

932 The crowns have eyes: Multiple opsins found in the eyes of the Crown-of-Thorns Starfish Acanthaster planci including the first r-opsin utilized by a deuterostome eye

Lowe, E. K.; Garm, A.; Ullrich-Luter, E.; Arnone, M. I.

10.1101/173187 — evolutionary biology — Posted on 2017-09-13

933 No general relationship between mass and temperature in endothermic species

Riemer, K.; Guralnick, R.; White, E.

10.1101/113753 — ecology — Posted on 2017-09-13

934 A Cdk1 phosphomimic mutant of MCAK impairs microtubule end recognition.

Belsham, H. R.; Friel, C. T.

10.1101/188425 — biochemistry — Posted on 2017-09-13

935 Characterization of Azotobacter vinelandii and Kits for Its Synthetic Biology Applications

Leung, K. P.; Loo, J. F. C.; Seak, L. C. U.; Lai, T. F.; Yip, K. Y. L.; Kong, S. K.; Chan, T. F.; Chan, K. M.

10.1101/188482 — synthetic biology — Posted on 2017-09-13

936 Evidence for a long-term protection of wheel-running exercise against cocaine psychomotor sensitization in adolescent but not in young adult mice

Lespine, L.-F.; Tirelli, E.

10.1101/188466 — neuroscience — Posted on 2017-09-13

937 A SUMO-dependent feedback loop senses and controls the biogenesis of nuclear pore subunits

ROUVIERE, J. O.; BULFONI, M.; TUCK, A.; COSSON, B.; DEVAUX, F.; PALANCADE, B.

10.1101/188441 — molecular biology — Posted on 2017-09-13

938 The evolutionary impact of Intragenic FliA Promoters in Proteobacteria

Fitzgerald, D.; Smith, C.; Lapierre, P.; Wade, J.

10.1101/188474 — genetics — Posted on 2017-09-13

939 CscoreTool: Fast Hi-C Compartment Analysis at High Resolution

Zheng, X.; Zheng, Y.

10.1101/188490 — bioinformatics — Posted on 2017-09-13

940 Systemic and vascular inflammation in an in-vitro model of central obesity

Ahluwalia, A.; Misto, A.; Vozzi, F.; Magliaro, C.; Mattei, G.; Marescotti, M. C.; Avogaro, A.; Iori, E.

10.1101/188391 — bioengineering — Posted on 2017-09-13

941 Nucleolin internalizes Bothrops asper Lys49 phospholipase A2 forming cell surface amyloid-like assemblies

Massimino, M. L.; Simonato, M.; Spolaore, B.; Franchin, C.; Arrigoni, G.; Marin, O.; Monturiol-Gross, L.; Fernandez, J.; Lomonte, B.; Tonello, F.

10.1101/188383 — biochemistry — Posted on 2017-09-13

942 A statistical framework for mapping risk genes from de novo mutations in whole-genome sequencing studies

Liu, Y.; Cicek, A. E.; Liang, Y.; Li, J.; Muhle, R. A.; Krenzer, M.; Mei, Y.; Wang, Y.; Knoblauch, N.; Morrison, J.; Jiang, Y.; Geller, E.; Li, Z.; Ionita-Laza, I.; Wu, J.; Xia, K.; Noonan, J. P.; Sun, Z. S.; He, X.

10.1101/077578 — genetics — Posted on 2017-09-13

943 A potential link between tuberculosis and lung cancer through non-coding RNAs

Barh, D.; Tiwari, S.; Kumavath, R. N.; Azevedo, V.

10.1101/188375 — cancer biology — Posted on 2017-09-13

944 Comparison of gene expression patterns of Kappaphycus alvarezii (Rhodophyta, Solieriaceae) under different light wavelengths and CO2 enrichment

Yee, T. V.; Rodrigues, K. F.; Thau Lym, W. Y.; Wong Vui Ling, C. M.

10.1101/188250 — plant biology — Posted on 2017-09-13

945 Modulation of visual gamma oscillation by excitatory drive and the excitation/inhibition balance in the visual cortex

Orekhova, E. V.; Sysoeva, O. V.; Schneiderman, J. F.; Lundstrom, S.; Galuta, I. A.; Goiaeva, D. E.; Prokofyev, A. O.; Riaz, B.; Keeler, C.; Hadjikhani, N.; Gillberg, C.; Stroganova, T.

10.1101/188326 — neuroscience — Posted on 2017-09-13

946 Aberrant brain response after auditory deviance in PTSD compared to trauma controls: An EEG study.

Bangel, K. A.; van Buschbach, S.; Smit, D. J. H.; Olff, M.; Mazaheri, A.

10.1101/186460 — neuroscience — Posted on 2017-09-13

947 Increased Activity of Tyrosine Hydroxylase Leads to Elevated Amphetamine Response and Markers of Oxidative Stress in Transgenic Mice

Vecchio, L. M.; Bermejo, M. K.; Dunn, A. R.; Milenkovic, M.; Urs, N.; Ramsey, A.; Miller, G. W.; Salahpour, A.

10.1101/188318 — neuroscience — Posted on 2017-09-13

948 Dual Competition between the Basal Ganglia and the Cortex: from Action-Outcome to Stimulus-Response

Topalidou, M.; Kase, D.; Boraud, T.; Rougier, N. P.

10.1101/187294 — neuroscience — Posted on 2017-09-13

949 Minimizing carry-over PCR contamination in expanded CAG/CTG repeat instability applications

Aeschbach, L.; Dion, V.

10.1101/187872 — molecular biology — Posted on 2017-09-13

950 Accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments

Petukhov, V.; Guo, J.; Baryawno, N.; Severe, N.; Scadden, D.; Samsonova, M. G.; Kharchenko, P. V.

10.1101/171496 — genomics — Posted on 2017-09-13

951 Quantification of frequency-dependent genetic architectures and action of negative selection in 25 UK Biobank traits

Schoech, A.; Jordan, D.; Loh, P.-R.; Gazal, S.; O'Connor, L.; Balick, D. J.; Palamara, P. F.; Finucane, H.; Sunyaev, S. R.; Price, A. L.

10.1101/188086 — genetics — Posted on 2017-09-13

952 Genome-wide analysis of genetic risk factors for rheumatic heart disease in Aboriginal Australians provides support for pathogenic molecular mimicry

Gray, L.-A.; D'Antoine, H. A.; Tong, S. Y. C.; McKinnon, M.; Bessarab, D.; Brown, N.; Remenyi, B.; Steer, A.; Syn, G.; Blackwell, J. M.; Inouye, M.; Carapetis, J. R.

10.1101/188334 — genetics — Posted on 2017-09-13

953 Comparison of GWAS models to identify non-additive genetic control of flowering time in sunflower hybrids

Bonnafous, F.; Fievet, G.; Blanchet, N.; Boniface, M.-C.; Carrere, S.; Gouzy, J.; Legrand, L.; Marage, G.; Bret-Mestries, E.; Munos, S.; Pouilly, N.; Vincourt, P.; Langlade, N. B.; Mangin, B.

10.1101/188235 — genetics — Posted on 2017-09-13

954 Drivers of diversity in individual life courses: Sensitivity of the population entropy of a Markov chain

Steiner, U. K.; Tuljapurkar, S.

10.1101/188276 — evolutionary biology — Posted on 2017-09-13

955 Thermal Tolerance is linked with Virulence in a Fish Pathogen

Ashrafi, R.; Bruneaux, M.; Sundberg, L.-R.; Pulkkinen, K.; Valkonen, J.; Ketola, T.

10.1101/188185 — evolutionary biology — Posted on 2017-09-13

956 Epigenome-associated phenotypic acclimatization to ocean acidification in a reef-building coral

Liew, Y. J.; Zoccola, D.; Li, Y.; Tambutte, E.; Venn, A. A.; Michell, C. T.; Cui, G.; Deutekom, E. S.; Kaandorp, J. A.; Voolstra, C. R.; Foret, S.; Allemand, D.; Tambutte, S.; Aranda, M.

10.1101/188227 — ecology — Posted on 2017-09-13

957 Endogenous α-SYN protein analysis on human brain tissues using single-molecule pull-down assay

Je, G.; Croop, B.; Basu, S.; Tang, J.; Han, K. Y.; Kim, Y.-S.

10.1101/188169 — biophysics — Posted on 2017-09-13

958 Anoctamin 9/TMEM16J is a Cation Channel Activated by cAMP/PKA Signal

Kim, H.; Kim, H.; Lee, J.; Lee, B.; Kim, H.; Jung, J.; Lee, M.-O.; Oh, U.

10.1101/188243 — biophysics — Posted on 2017-09-13

959 Population networks from DNA sequences: methodological developments

Schaeffer, B.; Nicolas, V.; Austerlitz, F.; Laredo, C.

10.1101/188268 — bioinformatics — Posted on 2017-09-13

960 NetMHCpan 4.0: Improved peptide-MHC class I interaction predictions integrating eluted ligand and peptide binding affinity data

Jurtz, V. I.; Paul, S.; Andreatta, M.; Marcatili, P.; Peters, B.; Nielsen, M.

10.1101/149518 — bioinformatics — Posted on 2017-09-13

961 Interactive Visual Analysis of Mass Cytometry Data by Hierarchical Stochastic Neighbor Embedding Reveals Rare Cell Types

van Unen, V.; Hollt, T.; Pezzotti, N.; Li, N.; Reinders, M. J. T.; Eisemann, E.; Vilanova, A.; Koning, F.; Lelieveldt, B. P. F.

10.1101/169888 — bioinformatics — Posted on 2017-09-13

962 Human Rab small GTPase- and class V myosin-mediated membrane tethering in a chemically defined reconstitution system

Inoshita, M.; Mima, J.

10.1101/129072 — biochemistry — Posted on 2017-09-13

963 Evaluating the Functional Pore Size of Chloroplast TOC and TIC Protein Translocons

Ganesan, I.; Shi, L.-X.; Labs, M.; Theg, S. M.

10.1101/188052 — biochemistry — Posted on 2017-09-13

964 Fish perform like mammals and birds in inhibitory motor control tasks

Lucon-Xiccato, T.; Gatto, E.; Bisazza, A.

10.1101/188359 — animal behavior and cognition — Posted on 2017-09-13

965 EPAC1 regulates endothelial Annexin A2 cell surface translocation and plasminogen activation

Yang, W.; Mei, F.; Cheng, X.

10.1101/187559 — cell biology — Posted on 2017-09-13

966 Crystal structure of BrlR reveals a potential pyocyanin binding site

Raju, H.; Sundararajan, R.; Sharma, R.

10.1101/188136 — biochemistry — Posted on 2017-09-13

967 Discordant association of the CREBRF rs373863828 minor allele with increased body mass index and protection from type 2 diabetes in Maori and Pacific (Polynesian) people living in New Zealand

Krishnan, M.; Major, T. J.; Topless, R. K.; Dewes, O.; Yu, L.; Thompson, J. M.; McCowan, L.; de Zoysa, J.; Stamp, L. K.; Dalbeth, N.; Harre Hindmarsh, J.; Rapana, N.; Deka, R.; Eng, W. W.; Weeks, D. E.; Minster, R. L.; McGarvey, S. T.; Viali, S.; Wilcox, P.; Grattan, D.; Shepherd, P. R.; Shelling, A. N.; Murphy, R.; Merriman, T. R.

10.1101/188110 — genetics — Posted on 2017-09-13

968 Measuring and Modeling Nonlinear Interactions Between Brain Regions with fMRI

Anzellotti, S.; Fedorenko, E.; Kell, A. J. E.; Caramazza, A.; Saxe, R.

10.1101/074856 — neuroscience — Posted on 2017-09-12

969 Notes On Synthesis Of Perdeutero-5-13C,5,5,5-Trifluoroisoleucine VI

Naugler, D.; Prosser, R. S.

10.1101/140681 — molecular biology — Posted on 2017-09-12

970 APC/CFZR-1 Controls SAS-5 Levels to Regulate Centrosome Duplication in Caenorhabditis elegans

Medley, J. C.; DeMeyer, L. E.; Kabara, M. M.; Song, M. H.

10.1101/186148 — genetics — Posted on 2017-09-12

971 Dose-response surface fits to drought and nitrogen limitation applied together allow mapping of loci that exhibit nonlinear responses

Chang, M. M.; Nail, D. A.; Kazic, T.; Simmons, S. J.; Stapleton, A. E.

10.1101/186791 — genetics — Posted on 2017-09-12

972 Dynamic contrast enhancement and flexible odor codes

Nizampatnam, S.; Saha, D.; Chandak, R.; Raman, B.

10.1101/188011 — neuroscience — Posted on 2017-09-12

973 Towards a neuro-computational account of prism adaptation

Petitet, P.; O'Reilly, J. X.; O'Shea, J.

10.1101/187963 — neuroscience — Posted on 2017-09-12

974 An ensemble code in medial prefrontal cortex links prior events to outcomes during learning

Maggi, S.; Peyrache, A.; Humphries, M.

10.1101/187948 — neuroscience — Posted on 2017-09-12

975 Distinct selection mechanisms for when predictions and rewards guide visual selective attention

Garner, K. G.; Raymond, J. E.

10.1101/188045 — neuroscience — Posted on 2017-09-12

976 A zombie LIF gene in elephants is up-regulated by TP53 to induce apoptosis in response to DNA damage

Vazquez, J. M.; Sulak, M.; Chigurupati, S.; Lynch, V. J.

10.1101/187922 — evolutionary biology — Posted on 2017-09-12

977 Effects of G2 checkpoint dynamics on the low-dose hyper-radiosensitivity

Olobatuyi, O.; de Vries, G.; Hillen, T.

10.1101/185371 — cancer biology — Posted on 2017-09-12

978 Obtaining 3D Super-resolution Information from 2D Super-resolution Images through a 2D-to-3D Transformation Algorithm

Ruba, A.; Kelich, J.; Luo, W.; Yang, W.

10.1101/188060 — biophysics — Posted on 2017-09-12

979 hmmIBD: software to infer pairwise identity by descent between haploid genotypes

Schaffner, S. F.; Taylor, A. R.; Wong, W.; Wirth, D. F.; Neafsey, D. E.

10.1101/188078 — bioinformatics — Posted on 2017-09-12

980 Mobile nucleosomes and the accessibility of transcription factors to DNA: a modified dynamic equilibrium model

Khamis, H.; Rudnizky, S.; Kaplan, A.

10.1101/187815 — biophysics — Posted on 2017-09-12

981 Predictive model identifies strategies to enhance TSP1-mediated apoptosis signaling

Wu, Q.; Finley, S. D.

10.1101/188003 — systems biology — Posted on 2017-09-12

982 Zerumbone From Zingiber zerumbet (L.) Smith: A Potential Prophylactic and Therapeutic Agent Against The Cariogenic Bacterium Streptococcus mutans

Moreira da Silva, T.; Pinheiro, C. D.; Puccinelli Orlandi, P.; Pinheiro, C. C.; Soares Pontes, G.

10.1101/187906 — pharmacology and toxicology — Posted on 2017-09-12

983 Microcircuitry of Performance Monitoring

Schall, J. D.; Sajad, A.; Godlove, D. C.

10.1101/187989 — neuroscience — Posted on 2017-09-12

984 Unification of Countermanding and Perceptual Decision-making

Middlebrooks, P. G.; Zandbelt, B.; Logan, G. D.; Palmeri, T. J.; Schall, J. D.

10.1101/158170 — neuroscience — Posted on 2017-09-12

985 Multispecies coalescent analysis unravels the non-monophyly and controversial relationships of Hexapoda

Freitas, L. A.; Mello, B.; Schrago, C. G.

10.1101/187997 — evolutionary biology — Posted on 2017-09-12

986 Estimating The Extinction Date Of The Thylacine Accounting For Unconfirmed Sightings

Carlson, C. J.; Bond, A. L.; Burgio, K. R.

10.1101/123331 — ecology — Posted on 2017-09-12

987 In vivo relevance of intercellular calcium signaling in Drosophila wing development

Wu, Q.; Brodskiy, P. A.; Huizar, F. J.; Jangula, J. J.; Narciso, C.; Levis, M. K.; Brito-Robinson, T.; Zartman, J. J.

10.1101/187401 — developmental biology — Posted on 2017-09-12

988 The FACT complex is required for DNA demethylation at heterochromatin during reproduction in Arabidopsis

Frost, J.; Kim, M. Y.; Park, G.-T.; Hsieh, P.-H.; Nakamura, M.; Lin, S.; Yoo, H.; Choi, J.; Ikeda, Y.; Kinoshita, T.; Choi, Y.; Zilberman, D.; Fischer, R. L.

10.1101/187674 — plant biology — Posted on 2017-09-12

989 Unmasking cellular response of a bloom-forming alga to virus infection by resolving expression profiling at a single-cell level

Rosenwasser, S.; Frada, M. J.; Pilzer, D.; Rotkopf, R.; Vardi, A.

10.1101/186981 — ecology — Posted on 2017-09-12

990 Modulation of apoptosis controls inhibitory interneuron number in the cortex

Denaxa, M.; Neves, G.; Rabinowitz, A.; Kemlo, S.; Liodis, P.; Burrone, J.; Pachnis, V.

10.1101/134916 — neuroscience — Posted on 2017-09-12

Samaha, J.; Postle, B. R.

10.1101/140558 — neuroscience — Posted on 2017-09-12

992 Analysis of two-stage task results: how changes in task structure affect what model-free and model-based strategies predict about the effects of reward and transition on the stay probability

Feher da Silva, C.; Hare, T. A.

10.1101/187856 — neuroscience — Posted on 2017-09-12

993 Alpha oscillations control cortical gain by modulating excitatory-inhibitory background activity.

Peterson, E. J.; Voytek, B.

10.1101/185074 — neuroscience — Posted on 2017-09-12

994 Intratumoral Heterogeneity of Tumor Infiltration of Glioblastoma Revealed by Joint Histogram Analysis of Diffusion Tensor Imaging

Li, C.; Wang, S.; Yan, J.-L.; Piper, R. J.; Liu, H.; Torheim, T.; Kim, H.; Boonzaier, N. R.; Sinha, R.; Matys, T.; Markowetz, F.; Price, S. J.

10.1101/187450 — neuroscience — Posted on 2017-09-12

995 Genetic analysis of very obese children with autism spectrum disorder

Cortes, H. D.; Wevrick, R.

10.1101/185900 — genetics — Posted on 2017-09-12

996 An almost nearly optimal sequential testing approach to permutation-based association testing

Hecker, J.; Ruczinski, I.; Coull, B.; Lange, C.

10.1101/186361 — genetics — Posted on 2017-09-12

997 Evidence for "inter- and intraspecific horizontal genetic transfers" between anciently asexual bdelloid rotifers is explained by cross-contamination

Wilson, C. G.; Nowell, R. W.; Barraclough, T. G.

10.1101/150490 — evolutionary biology — Posted on 2017-09-12

998 Estimating the Mutational Fitness Effects Distribution during early HIV infection

Bons, E.; Bertels, F. R.; Regoes, R. R.

10.1101/185678 — evolutionary biology — Posted on 2017-09-12

999 EPAC1 regulates endothelial Annexin A2 cell surface translocation and plasminogen activation

Yang, W.; Mei, F.; Cheng, X.

10.1101/187559 — cell biology — Posted on 2017-09-12

1000 Phosphatase PP2A and microtubule pulling forces disassemble centrosomes during mitotic exit

Enos, S. J.; Dressler, M.; Ferreira Gomes, B.; Hyman, A. A.; Woodruff, J. B.

10.1101/182618 — cell biology — Posted on 2017-09-12

1001 Mobile nucleosomes and the accessibility of transcription factors to DNA: a modified dynamic equilibrium model

Khamis, H.; Rudnizky, S.; Kaplan, A.

10.1101/187815 — biophysics — Posted on 2017-09-12

1002 Gpufit: An open-source toolkit for GPU-accelerated curve fitting

Przybylski, A.; Thiel, B.; Keller-Findeisen, J.; Stock, B.; Bates, M.

10.1101/174110 — biophysics — Posted on 2017-09-12

1003 Chiron: Translating nanopore raw signal directly into nucleotide sequence using deep learning

Teng, H.; Cao, M. D.; Hall, M. B.; Duarte, T.; Wang, S.; Coin, L.

10.1101/179531 — bioinformatics — Posted on 2017-09-12

1004 Data-driven Modeling of Thrombus Size and Shape in Aortic Dissections: Role of Hemodynamics

Yazdani, A.; Li, H.; Bersi, M.; Di Achille, P.; Insley, J.; Humphrey, J.; Karniadakis, G.

10.1101/187914 — bioengineering — Posted on 2017-09-12

1005 Crossing enhanced and high fidelity SpCas9 nucleases to optimize specificity and cleavage

Kulcsar, P. I.; Talas, A.; Huszar, K.; Ligeti, Z.; Toth, E.; Weinhardt, N.; Fodor, E.; Welker, E.

10.1101/187898 — bioengineering — Posted on 2017-09-12

1006 Elastase-2 knockout mice display anxiogenic- and antidepressant-like phenotype: putative role for BDNF metabolism in prefrontal cortex

Diniz, C. R. A. F.; Becari Ribeiro, C.; Lesnikova, A.; Biojone, C.; Salgado, M. C. O.; Salgado, H. C.; Resstel, L. B. M.; Guimaraes, F. S.; Castren, E.; Casarotto, P.; Joca, S.

10.1101/187831 — animal behavior and cognition — Posted on 2017-09-12

1007 Discovery of the Quiescent Body that Functions as a Biological Timer for Growth Resumption of Non-growing Bacterial Cells

Yu, J.; Liu, Y.; Chang, Z.

10.1101/107466 — microbiology — Posted on 2017-09-12

1008 MCAM contributes to the establishment of cell autonomous polarity in myogenic and chondrogenic differentiation

Moreno-Fortuny, A.; Bragg, L.; Cossu, G.; Roostalu, U.

10.1101/130906 — cell biology — Posted on 2017-09-12

1009 Things softly attained are long retained: Dissecting the Impacts of Selection Regimes on Polymorphism Maintenance in Experimental Spatially Heterogeneous Environments

Gallet, R.; Froissart, R.; Ravigne, V.

10.1101/100743 — evolutionary biology — Posted on 2017-09-12

1010 Spreading pre-saccadic attentional resources without trade-off

Puntiroli, M.; Deubel, H.; Szinte, M.

10.1101/187518 — neuroscience — Posted on 2017-09-12

1011 Porcupine: a visual pipeline tool for neuroimaging analysis

van Mourik, T.; Snoek, L.; Knapen, T.; Norris, D.

10.1101/187344 — neuroscience — Posted on 2017-09-12

1012 CA1 and CA3 pyramidal cell morphologies under Alzheimer’s disease Amyloid beta interaction

Rodrigues, Y. E.; da Silva Freitas, J.

10.1101/187476 — neuroscience — Posted on 2017-09-12

1013 Age, sex, and puberty related development of the corpus callosum: a multi-technique diffusion MRI study

Genc, S.; Malpas, C.; Ball, G.; Silk, T.; Seal, M.

10.1101/187724 — neuroscience — Posted on 2017-09-12

1014 Toxoplasma gondii microneme proteins 1 and 4 bind to Toll-like receptors 2 and 4 N-glycans triggering innate immune response

Sardinha-Silva, A.; Mendonca-Natividade, F. C.; Pinzan, C. F.; Lopes, C. D.; Costa, D. L.; Jacot, D.; Fernandes, F. F.; Zorzetto-Fernandes, A. L. V.; Gay, N. J.; Sher, A.; Jankovic, D.; Soldati-Favre, D.; Grigg, M. E.; Roque-Barreira, M. C.

10.1101/187690 — immunology — Posted on 2017-09-12

1015 Gene neighbourhood integrity disrupted by CTCF loss in vivo

Lee, D.; Tan, W.; Anene, G.; Li, P.; Danh, T.; Tiang, Z.; Ng, S. L.; Efthymios, M.; Autio, M.; Jiang, J.; Fullwood, M.; Prabhakar, S.; Foo, R.

10.1101/187393 — genomics — Posted on 2017-09-12

1016 KoVariome: Korean National Standard Reference Variome database of whole genomes with comprehensive SNV, indel, CNV, and SV analyses

Kim, J.; Weber, J.; Jho, S.; Jang, J.; Jun, J.; Cho, Y. S.; Kim, H.-M.; Kim, H.; Kim, Y.; Chung, O.; Kim, C. G.; Lee, H.; Kim, B. C.; Han, K.; Koh, I.; Chae, K. S.; Lee, S.; Edwards, J.; Bhak, J.

10.1101/187096 — genomics — Posted on 2017-09-12

1017 Whole genome sequence-based haplotypes reveal single origin of the sickle allele during the Holocene Wet Phase

Shriner, D.; Rotimi, C. N.

10.1101/187419 — genetics — Posted on 2017-09-12

1018 Mitochondrial Dual-coding Genes in Trypanosoma brucei

Kirby, L. E.; Koslowsky, D.

10.1101/187732 — genetics — Posted on 2017-09-12

1019 Genetic markers of ADHD-related variations in intracranial volume

Klein, M.; Walters, R. K.; Demontis, D.; Stein, J. L.; Hibar, D. P.; Adams, H. H.; Bralten, J.; Roth Mota, N.; Schachar, R.; Sonuga-Barke, E.; Mattheisen, M.; Neale, B. M.; Thompson, P. M.; Medland, S. E.; Borglum, A. D.; Faraone, S. V.; Arias-Vasquez, A.; Franke, B.

10.1101/184192 — genetics — Posted on 2017-09-12

1020 Complexity of evolutionary equilibria in static fitness landscapes

Kaznatcheev, A.

10.1101/187682 — evolutionary biology — Posted on 2017-09-12

1021 Early developmental morphology reflects independence from parents in social beetles

Benowitz, K. M.; Sparks, M. E.; McKinney, E. C.; Moore, P. J.; Moore, A. J.

10.1101/187740 — evolutionary biology — Posted on 2017-09-12

1022 Inferring critical points of ecosystem transitions from spatial data

Majumder, S.; Tamma, K.; Ramaswamy, S.; Guttal, V.

10.1101/187799 — ecology — Posted on 2017-09-12

1023 Motility-gradient induced elongation of the vertebrate embryo

Regev, I.; Guevorkian, K.; Pourquie, O.; Mahadevan, L.

10.1101/187443 — developmental biology — Posted on 2017-09-12

1024 Detection of small breast tumors using tumor penetrating-polymersomes engineered to target p32 protein

Simon-Gracia, L.; Scodeller, P.; Di Silvio, D.; Salzar Fuentes, S.; Gomez Vallejo, V.; Rios, X.; San Sebastian, E.; Suck, M.; De Lorenzi, F.; Yokota Rizzo, L.; von Stillfried, S.; Kilk, K.; Lammers, T.; Moya, S. E.; Teesalu, T.

10.1101/187716 — cancer biology — Posted on 2017-09-12

1025 Interactive Visual Analysis of Mass Cytometry Data by Hierarchical Stochastic Neighbor Embedding Reveals Rare Cell Types

van Unen, V.; Hollt, T.; Pezzotti, N.; Li, N.; Reinders, M. J. T.; Eisemann, E.; Vilanova, A.; Koning, F.; Lelieveldt, B. P. F.

10.1101/169888 — bioinformatics — Posted on 2017-09-12

1026 SHAMAN: bin-free randomization, normalization and screening of Hi-C matrices

Mendelson Cohen, N.; Olivares-Chauvet, P.; Lubling, Y.; Baran, Y.; Lifshitz, A.; Hoichman, M.; Tanay, A.

10.1101/187203 — bioinformatics — Posted on 2017-09-12

1027 Serial dependence is absent at the time of perception but increases in visual working memory

Bliss, D. P.; Sun, J. J.; D'Esposito, M.

10.1101/187666 — animal behavior and cognition — Posted on 2017-09-12

1028 Findings of a retrospective, controlled cohort study of the impact of a change in Nature journals' editorial policy for life sciences research on the completeness of reporting study design and execution

Macleod, M. R.; The NPQIP Collaborative group,

10.1101/187245 — scientific communication and education — Posted on 2017-09-12

1029 Parallels between artificial selection in temperate maize and natural selection in the cold-adapted crop-wild relative Tripsacum

Yan, L.; Lai, X.; Rodriguez, O.; Mahboub, S.; Roston, R. L.; Schnable, J. C.

10.1101/187575 — plant biology — Posted on 2017-09-12

1030 A core signaling mechanism at the origin of animal nociception

Arenas, O. M.; Zaharieva, E. E.; Para, A.; Vasquez-Doorman, C.; Petersen, C. P.; Gallio, M.

10.1101/185405 — neuroscience — Posted on 2017-09-12

1031 Frontal Eye Field inactivation diminishes Superior Colliculus activity, but delayed saccadic accumulation governs reaction time increases

Peel, T. R.; Dash, S.; Lomber, S. G.; Corneil, B. D.

10.1101/187492 — neuroscience — Posted on 2017-09-12

1032 Precision genome-editing with CRISPR/Cas9 in human induced pluripotent stem cells

Budde, J. P.; Martinez, R.; Hsu, S.; Wen, N.; Chen, J. A.; Coppola, G.; Goate, A. M.; Cruchaga, C.; Karch, C.

10.1101/187377 — genetics — Posted on 2017-09-12

1033 A Genome Scan for Genes Underlying Adult Body Size Differences between Central African Pygmies and their Non-Pygmy Neighbors

Pemberton, T.; Verdu, P.; Becker, N. S.; Willer, C. J.; Hewlett, B. S.; Le Bomin, S.; Froment, A.; Rosenberg, N. A.; Heyer, E.

10.1101/187369 — genetics — Posted on 2017-09-12

1034 Exome chip meta-analysis elucidates the genetic architecture of rare coding variants in smoking and drinking behavior

Liu, D. J.; Brazel, D. M.; Turcot, V.; Zhan, X.; Gong, J.; Barnes, D. R.; Bertelsen, S.; Chou, Y.-L.; Erzurumluoglu, A. M.; Faul, J. D.; Haessler, J.; Hammerschlag, A. R.; Hsu, C.; Kapoor, M.; Lai, D.; Le, N.; de Leeuw, C. A.; Loukola, A.; Mangino, M.; Melbourne, C. A.; Pistis, G.; Qaiser, B.; Rohde, R.; Shao, Y.; Stringham, H.; Wetherill, L.; Zhao, W.; Agrawal, A.; Beirut, L.; Chen, C.; Eaton, C. B.; Goate, A.; Haiman, C.; Heath, A.; Iacono, W. G.; Martin, N. G.; Polderman, T. J.; CHD Exome+ Consortium, ; Consortium for Genetics of Smoking Behavior, ; Reiner, A.; Rice, J.; Schlessinger, D.;

10.1101/187658 — genetics — Posted on 2017-09-12

1035 Theory, practice, and conservation in the age of genomics: the Galapagos giant tortoise as a case study

Gaughran, S. J.; Quinzin, M. C.; Miller, J. M.; Garrick, R. C.; Edwards, D. L.; Russello, M. A.; Poulakakis, N.; Ciofi, C.; Beheregaray, L. B.; Caccone, A.

10.1101/187534 — evolutionary biology — Posted on 2017-09-12

1036 Impacts of Recurrent Hitchhiking on Divergence and Demographic Inference in Drosophila

Lange, J. D.; Pool, J. E.

10.1101/187633 — evolutionary biology — Posted on 2017-09-12

1037 Statistical machine learning of sleep and physical activity phenotypes from sensor data in 96,609 UK Biobank participants

Willetts, M.; Hollowell, S.; Aslett, L.; Holmes, C.; Doherty, A.

10.1101/187625 — bioinformatics — Posted on 2017-09-12

1038 dBBQs : dataBase of Bacterial Quality scores

Wanchai, V.; Patumcharoenpol, P.; Nookaew, I.; Ussery, D.

10.1101/187641 — bioinformatics — Posted on 2017-09-12

1039 Methylation-To-Expression Feature Models of Breast Cancer Accurately Predict Overall Survival, Distant-Recurrence Free Survival, And Pathologic Complete Response in Multiple Cohorts

Thompson, J. A.; Christensen, B. C.; Marsit, C. J.

10.1101/187526 — bioinformatics — Posted on 2017-09-12

1040 Sensitive and specific post-call filtering of genetic variants in xenograft and primary tumors

Mannakee, B.; Balaji, U.; Witkiewicz, A. K.; Gutenkunst, R. N.; Knudsen, E. S.

10.1101/187468 — bioinformatics — Posted on 2017-09-12

1041 Project Dhaka: Variational Autoencoder for Unmasking Tumor Heterogeneity from Single Cell Genomic Data

Rashid, S.; Shah, S.; Pandya, R.

10.1101/183863 — genomics — Posted on 2017-09-11

1042 An automated high-throughput system for phenotypic screening of chemical libraries on C. elegans and parasitic nematodes

Partridge, F. A.; Brown, A. E.; Buckingham, S. D.; Willis, N. J.; Wynne, G. M.; Forman, R.; Else, K. J.; Morrison, A. A.; Matthews, J. B.; Russell, A. J.; Lomas, D. A.; Sattelle, D. B.

10.1101/187427 — pharmacology and toxicology — Posted on 2017-09-11

1043 Fronto-parietal Organization for Response Times in Inhibition of Return: The FORTIOR Model

Seidel Malkinson, T.; Bartolomeo, P.

10.1101/134163 — neuroscience — Posted on 2017-09-11

1044 Intratumoral Heterogeneity of Tumor Infiltration of Glioblastoma Revealed by Joint Histogram Analysis of Diffusion Tensor Imaging

Li, C.; Wang, S.; Yan, J.-L.; Piper, R. J.; Liu, H.; Torheim, T.; Kim, H.; Boonzaier, N. R.; Sinha, R.; Matys, T.; Markowetz, F.; Price, S. J.

10.1101/187450 — neuroscience — Posted on 2017-09-11

1045 Paupar LncRNA Promotes KAP1 Dependent Chromatin Changes And Regulates Subventricular Zone Neurogenesis

Pavlaki, I.; Alammari, F.; Sun, B.; Clark, N.; Sirey, T.; Lee, S.; Woodcock, D. J.; Ponting, C. P.; Szele, F. G.; Vance, K. W.

10.1101/187302 — neuroscience — Posted on 2017-09-11

1046 Endoplasmic reticulum stress engenders immune-resistant, latent pancreatic cancer metastases

Pommier, A.; Anaparthy, N.; Memos, N.; Larkin Kelley, Z.; Gouronnec, A.; Albrengues, J.; Egeblad, M.; Iacobuzio-Donahue, C. A.; Lyons, S. K.; Fearon, D. T.

10.1101/187484 — immunology — Posted on 2017-09-11

1047 No major flaws in "Identification of individuals by trait prediction using whole-genome sequencing data"

Lippert, C.; Sabatini, R.; Maher, M. C.; Kang, E. Y.; Lee, S.; Arikan, O.; Harley, A.; Bernal, A.; Garst, P.; Lavrenko, V.; Yocum, K.; Wong, T. M.; Zhu, M.; Yang, W.-Y.; Chang, C.; Hicks, B.; Ramakrishnan, S.; Tang, H.; Telenti, A.; Och, F.; Venter, J. C.

10.1101/187542 — genomics — Posted on 2017-09-11

1048 Novel Quantitative ChIP-seq Methods Measure Absolute Fold-Change in ER Binding Upon Fulvestrant Treatment

Guertin, M. J.; Markowetz, F.; Holding, A. N.

10.1101/182261 — genomics — Posted on 2017-09-11

1049 No major flaws in "Identification of individuals by trait prediction using whole-genome sequencing data"

10.1101/187542 — genomics — Posted on 2017-09-11

1050 Adult facilitation becomes competition as juvenile soapberry bugs age

Cenzer, M.

10.1101/186536 — ecology — Posted on 2017-09-11

1051 The U2AF homology motif kinase 1 (UHMK1) is upregulated upon hematopoietic cell differentiation

Barbutti, I.; Machado-Neto, J. A.; Arfelli, V. C.; de Melo Campos, P.; Traina, F.; Olalla Saad, S. T.; Froehlich Archangelo, L.

10.1101/187385 — cancer biology — Posted on 2017-09-11

1052 Real-time fluorescence and deformability cytometry - flow cytometry goes mechanics

Rosendahl, P.; Plak, K.; Jacobi, A.; Kraeter, M.; Toepfner, N.; Otto, O.; Herold, C.; Winzi, M.; Herbig, M.; Ge, Y.; Girardo, S.; Wagner, K.; Baum, B.; Guck, J.

10.1101/187435 — biophysics — Posted on 2017-09-11

1053 GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS

Ravasio, V.; Ritelli, M.; Legati, A.; Giacopuzzi, E.

10.1101/149146 — bioinformatics — Posted on 2017-09-11

1054 Ensemble gene function prediction database reveals genes important for complex I formation in Arabidopsis thaliana

Oest Hansen, B.; Meyer, E. H.; Ferrari, C.; Vaid, N.; Movahedi, S.; Vandepoele, K.; Nikoloski, Z.; Mutwil, M.

10.1101/181396 — bioinformatics — Posted on 2017-09-11

1055 Integrated design, execution, and analysis of arrayed and pooled CRISPR genome editing experiments

Canver, M. C.; Haeussler, M.; Bauer, D. E.; Orkin, S. H.; Sanjana, N. E.; Shalem, O.; Yuan, G.-C.; Zhang, F.; Concordet, J.-P.; Pinello, L.

10.1101/125245 — molecular biology — Posted on 2017-09-11

1056 Intercellular calcium signaling is regulated by morphogens during Drosophila wing development

Brodskiy, P. A.; Wu, Q.; Huizar, F. J.; Soundarrajan, D. K.; Narciso, C.; Levis, M.; Arredondo-Walsh, N.; Chen, J.; Liang, P.; Chen, D. Z.; Zartman, J. J.

10.1101/104745 — developmental biology — Posted on 2017-09-11

1057 Temporary mate removal during incubation leads to variable compensation in a biparental shorebird

Bulla, M.; Valcu, M.; Rutten, A. L.; Kempenaers, B.

10.1101/117036 — animal behavior and cognition — Posted on 2017-09-11

1058 Time Regained: How the Human Brain Constructs Memory for Time

Cohn-Sheehy, B. I.; Ranganath, C.

10.1101/186601 — neuroscience — Posted on 2017-09-11

1059 Instantiation of incentive value and movement invigoration by distinct midbrain dopamine circuits

Saunders, B. T.; Richard, J. M.; Margolis, E. B.; Janak, P. H.

10.1101/186502 — neuroscience — Posted on 2017-09-11

1060 Compensatory evolution facilitates the acquisition of multiple plasmids in bacteria

Santos-Lopez, A.; Bernabe-Balas, C.; San Millan, A.; Ortega-Huedo, R.; Hoefer, A.; Ares-Arroyo, M.; Gonzalez-Zorn, B.

10.1101/187070 — microbiology — Posted on 2017-09-11

1061 Microinjection to deliver protein and mRNA into zygotes of the cnidarian endosymbiosis model Aiptasia sp.

Bucher, M.; Jones, V. A. S.; Hambleton, E. A.; Guse, A.

10.1101/187278 — developmental biology — Posted on 2017-09-11

1062 A genome-wide RNAi screen identifies MASK as a positive regulator of cytokine receptor stability

Fisher, K. H.; Fragiadaki, M.; Pugazhendhi, D.; Bausek, N.; Brown, S.; Zeidler, M. P.

10.1101/187286 — cell biology — Posted on 2017-09-11

1063 Temporary mate removal during incubation leads to variable compensation in a biparental shorebir

Bulla, M.; Valcu, M.; Rutten, A. L.; Kempenaers, B.

10.1101/117036 — animal behavior and cognition — Posted on 2017-09-11

1064 Data-driven Topological Filtering based on Orthogonal Minimal Spanning Trees: Application to Multi-Group MEG Resting-State Connectivity

Dimitriadis, S.; Antonakakis, M.; Simos, P.; Fletcher, J. M.; Papanicolau, A.

10.1101/187252 — neuroscience — Posted on 2017-09-11

1065 Necrosis triggered by Mycobacterium tuberculosis alters macrophage triglyceride metabolism and inflammatory response in a DGAT1-dependent manner

Jaisinghani, N.; Dawa, S.; Singh, K.; Nandy, A.; Menon, D.; Bhandari, P.; Khare, G.; Tyagi, A.; Gandotra, S.

10.1101/187104 — immunology — Posted on 2017-09-11

1066 Trans-omic analysis reveals fed and fasting insulin signal across phosphoproteome, transcriptome, and metabolome

Kawata, K.; Yugi, K.; Hatano, A.; Fujii, M.; Tomizawa, Y.; Kokaji, T.; Sano, T.; Tanaka, K. Y.; Uda, S.; Kubota, H.; Suzuki, Y.; Matsumoto, M.; Nakayama, K. I.; Saitoh, K.; Kato, K.; Ueno, A.; Ohishi, M.; Soga, T.; Kuroda, S.

10.1101/187088 — systems biology — Posted on 2017-09-11

1067 Antisense transcription-dependent chromatin signature modulates sense transcription and transcript dynamics

Brown, T.; Howe, F. S.; Murray, S. C.; Seward, E.; Rata, S.; Angel, A.; Mellor, J.

10.1101/187237 — systems biology — Posted on 2017-09-11

1068 A Metabolic Reaction Balancing Web Service for Computational Systems Biology

Dobson, P. D.; Mendes, P.; Kell, D. B.; Swainston, N.

10.1101/187328 — systems biology — Posted on 2017-09-11

1069 Deletion of murine IQGAP1 results in increased mTOR activation and blunted ketogenic response

Erickson, H.; Anakk, S.

10.1101/182469 — physiology — Posted on 2017-09-11

1070 Internal amino acid state modulates yeast taste neurons to support protein homeostasis in Drosophila

Steck, K.; Walker, S. J.; Itskov, P. M.; Baltazar, C.; Ribeiro, C.

10.1101/187310 — neuroscience — Posted on 2017-09-11

1071 Reliable sensory processing in mouse visual cortex through inhibitory interactions between Somatostatin and Parvalbumin interneurons

Rikhye, R. V.; Hu, M.; Yildirim, M.; Sur, M.

10.1101/187062 — neuroscience — Posted on 2017-09-11

1072 Structural Design of Chimeric Antigens for Multivalent Protein Vaccines

Hollingshead, S. L.; Jongerius, I.; Exley, R. M.; Johnson, S.; Lea, S. M.; Tang, C. M.

10.1101/187336 — molecular biology — Posted on 2017-09-11

1073 Insights into Gasdermin D activation from the crystal structure of its C-terminal domain

Anton, L.; Sborgi, L.; Hiller, S.; Broz, P.; Maier, T.

10.1101/187211 — molecular biology — Posted on 2017-09-11

1074 Comparison of seven single cell Whole Genome Amplification commercial kits using targeted sequencing

Biezuner, T.; Raz, O.; Amir, S.; Milo, L.; Adar, R.; Fried, Y.; Ainbinder, E.; Shapiro, E.

10.1101/186940 — genomics — Posted on 2017-09-11

1075 An almost nearly optimal sequential testing approach to permutation-based association testing

Hecker, J.; Ruczinksi, I.; Coull, B.; Lange, C.

10.1101/186361 — genetics — Posted on 2017-09-11

1076 Mutational interactions define novel cancer subgroups

Kuipers, J.; Thurnherr, T.; Moffa, G.; Suter, P.; Behr, J.; Goosen, R.; Christofori, G.; Beerenwinkel, N.

10.1101/187260 — cancer biology — Posted on 2017-09-11

1077 Capturing the Difference in Humoral Immunity between Normal and Tumor Environments from RNA Sequences of B-Cell Receptors Using Supervised Machine Learning

Konishi, H.; Komura, D.; Katoh, H.; Atsumi, S.; Koda, H.; Yamamoto, A.; Yasuyuki, S.; Fukayama, M.; Yamaguchi, R.; Imoto, S.; Ishikawa, S.

10.1101/187120 — bioinformatics — Posted on 2017-09-11

1078 Filtering Methods to Improve the Accuracy of Indoor Positioning Data for Dairy Cows

Pastell, M.; Frondelius, L.; Jarvinen, M.; Backman, J.

10.1101/186353 — animal behavior and cognition — Posted on 2017-09-11

1079 APC/CFZR-1 Controls SAS-5 Levels to Regulate Centrosome Duplication in Caenorhabditis elegans

Medley, J. C.; DeMeyer, L. E.; Kabara, M. M.; Song, M. H.

10.1101/186148 — genetics — Posted on 2017-09-11

1080 Dynamic changes in clonal architecture during disease progression in follicular lymphoma

Flensburg, C.; Sargeant, T.; Bosma, A.; Kluin, R. J. C.; Kibbelaar, R. E.; Hoogendoorn, M.; Alexander, W. S.; Roberts, A. W.; Bernards, R.; de Jong, D.; Majewski, I.

10.1101/181792 — cancer biology — Posted on 2017-09-11

1081 Standing Sentinel during Sleep: Continued Evaluation of Environmental Stimuli in the Absence of Consciousness

Blume, C.; del Giudice, R.; Wislowska, M.; Heib, D. P. J.; Schabus, M.

10.1101/187195 — neuroscience — Posted on 2017-09-11

1082 Identification of DISE-inducing shRNAs by monitoring cellular responses

Patel, M.; Peter, M.

10.1101/186890 — cancer biology — Posted on 2017-09-10

1083 Characterizing the temporal dynamics of object recognition by deep neural networks: role of depth

Ramakrishnan, K.; Groen, I. I. A.; Smeulders, A. W. M.; Scholte, H. S.; Ghebreab, S.

10.1101/178541 — neuroscience — Posted on 2017-09-10

1084 Common framework for virtual lesion and state-dependent TMS: the facilitatory/suppressive range model of online TMS effects on behavior

Silvanto, J.; Cattaneo, Z.

10.1101/187005 — neuroscience — Posted on 2017-09-10

1085 De novo long-read assembly of a complex animal genome

Eccles, D.; Chandler, J.; Camberis, M.; Henrissat, B.; Koren, S.; Le Gros, G.; Ewbank, J.

10.1101/187054 — genomics — Posted on 2017-09-10

1086 Candidate genes-based investigation of susceptibility to Human African Trypanosomiasis in Côte d’Ivoire

Ahouty, B.; Koffi, M.; Ilboudo, H.; Simo, G.; Matovu, E.; Mulindwa, J.; Hertz-Fowler, C.; Bucheton, B.; Sidibe, I.; Jammoneau, V.; MacLeod, A.; Noyes, H.; N'Guetta, S.-P.; TrypanoGEN Consortium, ; H3Africa Consortium,

10.1101/186718 — genetics — Posted on 2017-09-10

1087 The widespread misconception about the Japanese major biogeographic boundary, the Watase line (Tokara gap), revealed by bibliographic and beta diversity analyses

Komaki, S.; Igawa, T.

10.1101/186775 — ecology — Posted on 2017-09-10

1088 Estimates of vital rates and predictions of population dynamics change along a long-term monitoring program

Vincenzi, S.; Jesensek, D.; Crivelli, A. J.

10.1101/186932 — ecology — Posted on 2017-09-10

1089 Phenological responses to multiple environmental drivers under climate change: insights from a long-term observational study and a manipulative field experiment

Wadgymar, S. M.; Ogilvie, J. E.; Inouye, D. W.; Weis, A. E.; Anderson, J. T.

10.1101/187021 — ecology — Posted on 2017-09-10

1090 Macroecology suggests cancer-causing papillomaviruses form non-neutral communities

Felez-Sanchez, M.; Murall, C. L.; Bravo, I. G.

10.1101/187047 — ecology — Posted on 2017-09-10

1091 Evaluation of Convolutionary Neural Networks Modeling of DNA Sequences using Ordinal versus one-hot Encoding Method

Choong, A. C. H.; Lee, N. K.

10.1101/186965 — bioinformatics — Posted on 2017-09-10

1092 Fossils know it best: using a new set of fossil calibrations to improve the temporal phylogenetic framework of murid rodents (Rodentia: Myomorpha: Muroidea: Muridae)

Aghova, T.; Kimura, Y.; Bryja, J.; Dobigny, G.; Granjon, L.; Kergoat, G. J.

10.1101/180398 — zoology — Posted on 2017-09-10

1093 Instantiation of incentive value and movement invigoration by distinct midbrain dopamine circuits

Saunders, B.; Richard, J.; Margolis, E.; Janak, P.

10.1101/186502 — neuroscience — Posted on 2017-09-10

1094 Integrative and distinctive coding of perceptual and conceptual object features in the ventral visual stream

Martin, C. B.; Douglas, D.; Newsome, R. N.; Man, L. L. Y.; Barense, M. D.

10.1101/186924 — neuroscience — Posted on 2017-09-10

1095 Expect to neglect: Cross-modal resource allocation in anticipation of visual load

Bangel, K. A.; Slagter, H. A.; Mazaheri, A.

10.1101/186411 — neuroscience — Posted on 2017-09-10

1096 Rapid seasonal evolution in innate immunity of wild Drosophila melanogaster

Behrman, E. L.; Howick, V. M.; Kapun, M.; Staubach, F.; Bergland, A. O.; Petrov, D. A.; Lazzaro, B. P.; Schmidt, P. S.

10.1101/186882 — evolutionary biology — Posted on 2017-09-10

1097 A minimalist approach to protein identification

Sampath, G.

10.1101/187013 — bioinformatics — Posted on 2017-09-10

1098 Cued reactivation during slow-wave sleep induces connectivity changes related to memory stabilization.

Berkers, R. M. W. J.; Ekman, M.; van Dongen, E. V.; Takashima, A.; Barth, M.; Paller, K.; Fernandez, G.

10.1101/185611 — neuroscience — Posted on 2017-09-10

1099 Patterns of gene body methylation predict coral fitness in new environments

Dixon, G. B.; Bay, L. K.; Matz, M. V.

10.1101/184457 — ecology — Posted on 2017-09-10

1100 Exploration and generalization in vast spaces

Wu, C. M.; Schulz, E.; Speekenbrink, M.; Nelson, J. D.; Meder, B.

10.1101/171371 — animal behavior and cognition — Posted on 2017-09-10

1101 Frequent Non-Allelic Gene Conversion On The Human Lineage And Its Effect On The Divergence Of Gene Duplicates

Harpak, A.; Lan, X.; Gao, Z.; Pritchard, J. K.

10.1101/135152 — genomics — Posted on 2017-09-10

1102 POWERDRESS-mediated histone deacetylation is essential for thermomorphogenesis in Arabidopsis thaliana

Tasset, C.; Singh Yadav, A.; Sureshkumar, S.; Singh, R.; van der Woude, L.; Nekrasov, M.; Tremethick, D.; van Zanten, M.; Balasubramanian, S.

10.1101/186916 — genetics — Posted on 2017-09-10

1103 Induction of DISE in ovarian cancer cells in vivo

Murmann, A. E.; McMahon, K. M.; Haluck-Kangas, A.; Ravindran, N.; Patel, M.; Law, C.; Brockway, S.; Wei, J.-J.; Thaxton, C. S.; Peter, M.

10.1101/141945 — cancer biology — Posted on 2017-09-10

1104 Toxic si/shRNAs that kill cancer cells by targeting survival genes

Putzbach, W.; Gao, Q. Q.; Patel, M.; van Dongen, S.; Haluck-Kangas, A.; Sarshad, A. A.; Bartom, E.; Kim, K.-Y. A.; Scholtens, D. M.; Hafner, M.; Zhao, J. C.; Murmann, A. E.; Peter, M. E.

10.1101/141952 — cancer biology — Posted on 2017-09-10

1105 Allosteric signalling paths in hemoglobin: a protein dynamics network analysis

Monza, E.; Blouin, G.; Spiro, T. G.; Guallar, V.

10.1101/134288 — bioinformatics — Posted on 2017-09-10

1106 Replication Timing Networks: a novel class of gene regulatory networks

Rivera-Mulia, J. C.; Kim, S.; Gabr, H.; Kahveci, T.; Gilbert, D. M.

10.1101/186866 — systems biology — Posted on 2017-09-10

1107 Propofol induces metabolic reprogramming and cell death in a mitochondrial electron transport chain-dependent manner

Sumi, C.; Okamoto, A.; Tanaka, H.; Nishi, K.; Kusunoki, M.; Shoji, T.; Uba, T.; Matsuo, Y.; Adachi, T.; Hayashi, J.-I.; Takenaga, K.; Hirota, K.

10.1101/181933 — pharmacology and toxicology — Posted on 2017-09-10

1108 Perceptual decisions result from the continuous accumulation of memory and sensory evidence

Bornstein, A. M.; Aly, M.; Feng, S.; Turk-Browne, N. B.; Norman, K. A.; Cohen, J. D.

10.1101/186817 — neuroscience — Posted on 2017-09-10

1109 Abdominal adiposity negatively associates with the rate of long term sequential skill learning

Millette, A.; Lynch, B.; Verstynen, T.

10.1101/186742 — neuroscience — Posted on 2017-09-10

1110 Impaired conscious access and abnormal attentional amplification in schizophrenia

Berkovitch, L.; Del Cul, A.; Maheu, M.; Dehaene, S.

10.1101/186304 — neuroscience — Posted on 2017-09-10

1111 The crossmodal congruency effect, a tool incorporation metric, suffers from a learning effect with repeated exposures

Gill, S.; Wilson, A.; Blustein, D.; Sensinger, J.

10.1101/186825 — neuroscience — Posted on 2017-09-10

1112 Regulated release of cryptococcal polysaccharide drives virulence and suppresses immune cell infiltration into the central nervous system

Denham, S. T.; Verma, S.; Reynolds, R. C.; Worne, C. L.; Daugherty, J. M.; Lane, T. E.; Brown, J. C. S.

10.1101/186668 — microbiology — Posted on 2017-09-10

1113 Viable But Non-Culturable Cells Are Persister Cells

Kim, J.-S.; Chowdhury, N.; Wood, T. K.

10.1101/186858 — microbiology — Posted on 2017-09-10

1114 Novel transcriptional activity and extensive allelic imbalance in the human MHC region

Gensterblum, E.; Wu, W.; Sawalha, A. H.

10.1101/186809 — genomics — Posted on 2017-09-10

1115 Dose-response surface fits to drought and nitrogen limitation applied together allow mapping of loci that exhibit nonlinear responses

Chang, M. M.; Nail, D. A.; Kazic, T.; Simmons, S. J.; Stapleton, A. E.

10.1101/186791 — genetics — Posted on 2017-09-10

1116 A rainfall-manipulation experiment with 517 Arabidopsis thaliana accessions

Exposito-Alonso, M.; Gomez Rodriguez, R.; Barragan, C.; Capovilla, G.; Chae, E.; Devos, J.; Dogan, E. S.; Friedemann, C.; Gross, C.; Lang, P.; Lundberg, D.; Middendorf, V.; Kageyama, J.; Karasov, T.; Kersten, S.; Petersen, S.; Rabbani, L.; Regalado, J.; Reinelt, L.; Rowan, B.; Seymour, D. K.; Symeonidi, E.; Schwab, R.; Tran, D. T. N.; Venkataramani, K.; Van de Weyer, A.-L.; Vasseur, F.; Wang, G.; Wedegärtner, R.; Weiss, F.; Wu, R.; Xi, W.; Zaidem, M.; Zhu, W.; Garcia-Arenal, F.; Burbano, H. A.; Bossdorf, O.; Weigel, D.

10.1101/186767 — evolutionary biology — Posted on 2017-09-10

1117 Analysis of bacterial genomes from an evolution experiment with horizontal gene transfer shows that recombination can sometimes overwhelm selection

Maddamsetti, R.; Lenski, R. E.

10.1101/186759 — evolutionary biology — Posted on 2017-09-10

1118 Extinction models of robustness for weighted ecological networks

Bane, M. S.; Pocock, M. J. O.; James, R.

10.1101/186577 — ecology — Posted on 2017-09-10

1119 Identification of DISE-inducing shRNAs by monitoring cellular responses

Peter, M.; Patel, M.

10.1101/186890 — cancer biology — Posted on 2017-09-10

1120 Understanding and mitigating some limitations of Illumina (C) MiSeq for environmental sequencing of fungi.

Thomas, D.; Bailes, G.; Vandegrift, R.; Roy, B. A.

10.1101/184960 — bioinformatics — Posted on 2017-09-10

1121 IPCAPS: an R package for iterative pruning to capture population structure

Chaichoompu, K.; Abegaz, F.; Tongsima, S.; Shaw, P. J.; Sakuntabhai, A.; Pereira, L.; Van Steen, K.

10.1101/186874 — bioinformatics — Posted on 2017-09-10

1122 PDZ Domains in Microorganisms: Link Between Stress Response and Protein Synthesis

Muley, V. Y.; Galande, S.

10.1101/186510 — bioinformatics — Posted on 2017-09-10

1123 Positional encoding in cotton-top tamarins (Saguinus oedipus)

Versace, E.; Rogge, J. R.; Shelton-May, N.; Ravignani, A.

10.1101/186692 — animal behavior and cognition — Posted on 2017-09-10

1124 Genomic evidence for population specific selection in Nilo-Saharan and Niger-Congo linguistic groups in Africa

Mulindwa, J.; Noyes, H. A.; Ilboudo, H.; Nyangiri, O.; Koffi, M.; Mumba, D.; Simo, G.; Enyaru, J.; Chisi, J.; Simuunza, M.; Alibu, V. P.; Lejon, V.; Jammoneau, V.; MacLeod, A.; Bucheton, B.; Hertz-Fowler, C.; Sidibe, I.; Matovu, E.; The TrypanoGEN Consortium, ; The H3Africa Consortium,

10.1101/186700 — genomics — Posted on 2017-09-10

1125 Novel full-length major histocompatibility complex class I allele discovery and haplotype definition in pig-tailed macaques

Semler, M.; Wiseman, R.; Karl, J.; Graham, M.; Gieger, S.; O'Connor, D.

10.1101/186494 — genetics — Posted on 2017-09-10

1126 Heritable variation in bleaching responses and its functional genomic basis in reef-building corals (Orbicella faveolata)

Dziedzic, K.; Elder, H.; Meyer, E.

10.1101/185595 — evolutionary biology — Posted on 2017-09-10

1127 Population Genomics of the Foothill Yellow-Legged Frog (Rana boylii) and RADseq Parameter Choice for Large-Genome Organisms

McCartney-Melstad, E.; Gidis, M.; Shaffer, H. B.

10.1101/186635 — evolutionary biology — Posted on 2017-09-10

1128 Quantitative Characterization of Biological Age and Frailty Based on Locomotor Activity Records

Pyrkov, T. V.; Getmantsev, E.; Zhurov, B.; Avchaciov, K.; Pyatnitskiy, M.; Menshikov, L.; Khodova, K.; Gudkov, A. V.; Fedichev, P. O.

10.1101/186569 — systems biology — Posted on 2017-09-09

1129 Correlative three-dimensional fluorescence and refractive index tomography: bridging the gap between molecular specificity and quantitative bioimaging

Kim, K.; PARK, W. S.; Na, S.; Kim, S.; Kim, T.; Heo, W. D.; Park, Y.

10.1101/186734 — cell biology — Posted on 2017-09-09

1130 Comparative Analysis Of Cell Ultrastructure With Evidences Of Programmed Death In Tissue Cultures Of Cereals

Bishimbayeva, N. K.; Rakhimova, E. V.

10.1101/186676 — cell biology — Posted on 2017-09-09

1131 Novel pedigree analysis implicates DNA repair and chromatin remodeling in Multiple Myeloma risk

Waller, R. G.; Darlington, T. M.; Wei, X.; Madsen, M.; Thomas, A.; Curtin, K.; Coon, H.; Rajamanickam, V.; Musinsky, J.; Jayabalan, D.; Atanackovic, D.; Rajkumar, V.; Kumar, S.; Slager, S.; Middha, M.; Galia, P.; Demangel, D.; Salama, M.; Joseph, V.; McKay, J.; Offit, K.; Klein, R. J.; Lipkin, S. M.; Dumontet, C.; Vachon, C. M.; Camp, N. J.

10.1101/137000 — genetics — Posted on 2017-09-09

1132 GSimp: A Gibbs sampler based left-censored missing value imputation approach for metabolomics studies

Wei, R.; Wang, J.; Jia, E.; Chen, T.; Ni, Y.; Jia, W.

10.1101/177410 — bioinformatics — Posted on 2017-09-09

1133 Variability in prior expectations explains biases in confidence reports

Tano, P.; Meyniel, F.; Sigman, M.; Salles, A.

10.1101/127399 — animal behavior and cognition — Posted on 2017-09-09

1134 Polygenic selection underlies evolution of human brain structure and behavioral traits

Beiter, E. R.; Khramtsova, E. A.; van der Merwe, C.; Chimusa, E. R.; Simonti, C.; Stein, J.; Thompson, P.; Fisher, S.; Stein, D. J.; Capra, J. A.; Knowles, J. A.; Stranger, B. E.; Davis, L. K.

10.1101/164707 — evolutionary biology — Posted on 2017-09-09

1135 Genetic and metabolic regulation of Mycobacterium tuberculosis acid growth arrest

Baker, J. J.; Abramovitch, R. B.

10.1101/186551 — microbiology — Posted on 2017-09-09

1136 Avoiding ascertainment bias in the maximum likelihood inference of phylogenies based on truncated data

Tamuri, A.; Goldman, N.

10.1101/186478 — evolutionary biology — Posted on 2017-09-09

1137 DNA metabarcoding potentially reveals multi-assemblage eutrophication responses in an eastern North American river

Craine, J.; Cannon, M.; Elmore, A.; Guinn, S.; Fierer, N.

10.1101/186452 — ecology — Posted on 2017-09-09

1138 Adult facilitation becomes competition as juvenile soapberry bugs age

Cenzer, M.

10.1101/186536 — ecology — Posted on 2017-09-09

1139 Multiplane and Spectrally-Resolved Single Molecule Localization Microscopy with Industrial Grade CMOS Cameras

Babcock, H.

10.1101/186544 — biophysics — Posted on 2017-09-09

1140 Euplotid: A Linux-based platform to physically edit the genome

Borges-Rivera, D.

10.1101/170159 — biophysics — Posted on 2017-09-08

1141 Genome-wide association study of offspring birth weight in 86,577 women highlights maternal genetic effects that are independent of fetal genetics

Beaumont, R. N.; Warrington, N. M.; Cavadino, A.; Tyrrell, J.; Nodzenski, M.; Horikoshi, M.; Geller, F.; Myhre, R.; Richmond, R.; Paternoster, L.; Bradfield, J.; Kreiner-Moller, E.; Huikari, V.; Metrustry, S.; Lunetta, K.; Painter, J.; Hottenga, J.-J.; Allard, C.; Barton, S.; Espinosa, A.; Marsh, J.; Potter, C.; Zhang, G.; Ang, W.; Berry, D.; Bouchard, L.; Das, S.; Hakonarson, H.; Heikkinen, J.; Helgeland, O.; Hocher, B.; Hofman, A.; Inskip, H.; Jones, S. E.; Kogevinas, M.; Lind, P.; Marullo, L.; Medland, S.; Murray, A.; Murray, J.; Njolstad, P. R.; Nohr, E.; Reichetzeder, C.; Ring, S.; Ruth,

10.1101/034207 — genetics — Posted on 2017-09-08

1142 Electrical synapses between inhibitory neurons shape the responses of principal neurons to transient inputs in the thalamus

Pham, T.; Haas, J.

10.1101/186585 — neuroscience — Posted on 2017-09-08

1143 Identification of regulatory targets for the bacterial Nus factor complex

Baniulyte, G.; Singh, N.; Benoit, C.; Johnson, R.; Ferguson, R.; Paramo, M.; Stringer, A.; Scott, A.; Lapierre, P.; Wade, J.

10.1101/091223 — microbiology — Posted on 2017-09-08

1144 Beyond Reward Prediction Errors: Human Striatum Updates Rule Values During Learning

Ballard, I.; Miller, E.; Piantadosi, S.; Goodman, N.; McClure, S.

10.1101/115253 — neuroscience — Posted on 2017-09-08

1145 An integrated analysis of the epigenetic, genetic, and transcriptional patterns associated with outcome across cancer types

Smith, J. C.; Sheltzer, J. M.

10.1101/186528 — cancer biology — Posted on 2017-09-08

1146 Specter: linear deconvolution as a new paradigm for targeted analysis of data-independent acquisition mass spectrometry proteomics

Peckner, R.; Myers, S. A.; Egertson, J. D.; Johnson, R. S.; Abelin, J. G.; Carr, S. A.; MacCoss, M. J.; Jaffe, J. D.

10.1101/152744 — bioinformatics — Posted on 2017-09-08

1147 The Human Visual Cortex Response To Melanopsin-Directed Stimulation Is Accompanied By A Distinct Perceptual Experience

Spitschan, M.; Bock, A.; Ryan, J.; Frazzetta, G.; Brainard, D. H.; Aguirre, G. K.

10.1101/138768 — neuroscience — Posted on 2017-09-08

1148 Using Outliers in Freesurfer Segmentation Statistics to Identify Cortical Reconstruction Errors in Structural Scans

Waters, A.; Mace, R.; Sawyer, K.; Gansler, D.

10.1101/176818 — neuroscience — Posted on 2017-09-08

1149 Comment on "A genetic signature of the evolution of loss of flight in the Galapagos cormorant"

Berger, M. J.; Bejerano, G.

10.1101/181826 — genomics — Posted on 2017-09-08

1150 Evolutionary Genetics of a Disease Susceptibility Locus in CDHR3

O'Neill, M. B.; Laval, G.; Teixeira, J.; Palmenberg, A.; Pepperell, C.

10.1101/186031 — genetics — Posted on 2017-09-08

1151 Clustering of adult-onset diabetes into novel subgroups guides therapy and improves prediction of outcome

Ahlqvist, E.; Storm, P.; Karajamaki, A.; Martinell, M.; Dorkhan, M.; Carlsson, A.; Vikman, P.; Prasad, R. B.; Mansour Aly, D.; Almgren, P.; Wessman, Y.; Shaat, N.; Spegel, P.; Mulder, H.; Lindholm, E.; Melander, O.; Hansson, O.; Malmqvist, U.; Lernmark, A.; Lahti, K.; Forsen, T.; Tuomi, T.; Rosengren, A. H.; Groop, L.

10.1101/186387 — epidemiology — Posted on 2017-09-08

1152 A novel data-driven model for real-time influenza forecasting

Venna, S. R.; Tavanaei, A.; Gottumukkala, R. N.; Raghavan, V. V.; Maida, A.; Nichols, S.

10.1101/185512 — epidemiology — Posted on 2017-09-08

1153 Review of UNAIDS national estimates of men who have sex with men, gay dating application users, and HIV 90-90-90 data

Granich, R.; Gupta, S.; Garner, A.; Howell, S.

10.1101/186163 — epidemiology — Posted on 2017-09-08

1154 Nkx2.5-dependent alterations of the embryonic heart DNA methylome identify novel cis-regulatory elements in cardiac development

Gorsi, B.; Mosbruger, T.; Smith, M.; Hill, J.; Yost, H. J.

10.1101/186395 — developmental biology — Posted on 2017-09-08

1155 Down-regulation of LRIG1 by miR-20a modulates gastric cancer multidrug resistance

Zhou, L.; Li, X.; Zhou, F.; Jin, Z.; Chen, D.; Wang, P.; Zhang, S.; Zhuge, Y.; Shang, Y.; Zou, X.

10.1101/186403 — cancer biology — Posted on 2017-09-08

1156 The lamellipodium is a myosin independent mechanosensor

Oakes, P. W.; Bidone, T. C.; Beckham, Y.; Skeeters, A. V.; Ramirez-San Juan, G. R.; Winter, S. P.; Voth, G. A.; Gardel, M. L.

10.1101/186437 — biophysics — Posted on 2017-09-08

1157 Paratope Prediction using Convolutional and Recurrent Neural Networks

Liberis, E.; Velickovic, P.; Sormanni, P.; Vendruscolo, M.; Lio, P.

10.1101/185488 — bioinformatics — Posted on 2017-09-08

1158 Drosophila Mutants that Are Motile but Respond Poorly to All Stimuli Tested

Vang, L. L.; Adler, J.

10.1101/066423 — animal behavior and cognition — Posted on 2017-09-08

1159 Neuronal populations in the occipital cortex of the blind synchronize to the temporal dynamics of speech

van Ackeren, M. J.; Barbero, F. M.; Mattioni, S.; Bottini, R.; Collignon, O.

10.1101/186338 — neuroscience — Posted on 2017-09-08

1160 Increased axonal bouton stability during learning in the mouse model of MECP2 duplication syndrome

Ash, R. T.; Fahey, P. G.; Park, J.; Zoghbi, H. Y.; Smirnakis, S. M.

10.1101/186239 — neuroscience — Posted on 2017-09-08

1161 Longitudinal development of hippocampal subregions from childhood to adulthood

Tamnes, C. K.; Bos, M. G. N.; van de Kamp, F. C.; Peters, S.; Crone, E. A.

10.1101/186270 — neuroscience — Posted on 2017-09-08

1162 Development of Echovirus 29 cytopathology in RD cell line might not happen within 10 days post inoculation.

Adewumi, M. O.; Faleye, T. O. C.; Ayinde, O. T.; Ibok, U. I.; Adeniji, J. A.

10.1101/186205 — microbiology — Posted on 2017-09-08

1163 Analysis of the immunological biomarker profile during acute Zika virus infection reveals the overexpression of CXCL10, a chemokine already linked to neuronal damage

Naveca, F. G.; Pontes, G.; Chang, A.; da Silva, G. A. V.; do Nascimento, V. A.; Monteiro, D. C. d. S.; da Silva, M. S.; Abdalla, L. F.; Santos, J. H. A.; de Almeida, T. A. P.; Mejia, M. d. C. C.; de Mesquita, T. G. R.; Encarnacao, H. V. d. S.; de Souza Gomes, M.; Amaral, L. R.; Campi-Azevedo, A. C.; Coelho-dos-Reis, J. G.; Antonelli, L.; Teixeira-Carvalho, A.; Martins-Filho, O.; Ramasawmy, R.

10.1101/185041 — immunology — Posted on 2017-09-08

1164 A machine-learning heuristic to improve gene score prediction of polygenic traitsShort title: Machine-learning boosted gene scores

Pare, G.; Mao, S.; Deng, W. Q.

10.1101/107409 — genetics — Posted on 2017-09-08

1165 Genome Comparisons Indicate Recent Transfer Of wRi-Like Wolbachia Between Sister Species Drosophila suzukii And D. subpulchrella

Conner, W. R.; Blaxter, M. L.; Anfora, G.; Ometto, L.; Rota-Stabelli, O.; Turelli, M.

10.1101/135475 — evolutionary biology — Posted on 2017-09-08

1166 Spatial heterogeneity and evolutionary dynamics modulate time to recurrence in continuous and adaptive cancer therapies

Gallaher, J. A.; Enriquez-Navas, P. M.; Luddy, K. A.; Gatenby, R. A.; Anderson, A. R. A.

10.1101/128959 — cancer biology — Posted on 2017-09-08

1167 Interaction of N-3-oxododecanoyl homoserine lactone with transcriptional regulator LasR of Pseudomonas aeruginosa: Insights from molecular docking and dynamics simulations

Grabski, H.; Hunanyan, L.; Tiratsuyan, S.; Vardapetyan, H.

10.1101/121681 — bioinformatics — Posted on 2017-09-08

1168 Genomic and transcriptomic signals of thermal tolerance in heat-tolerant corals (Platygyra daedalea) of the Arabian/Persian Gulf

Kirk, N. L.; Howells, E. J.; Abrego, D.; Burt, J. A.; Meyer, E.

10.1101/185579 — evolutionary biology — Posted on 2017-09-08

1169 Invasion triple trouble: Environmental fluctuations, fluctuation-adapted invaders and fluctuation-mal-adapted communities all govern invasion success

Saarinen, K.; Lindstrom, L.; Ketola, T.

10.1101/186254 — ecology — Posted on 2017-09-08

1170 Inferring parameters for a lattice-free model of cell migration and proliferation using experimental data

Browning, A.; McCue, S. W.; Binny, R. N.; Plank, M. J.; Shah, E. T.; Simpson, M. J.

10.1101/186197 — cell biology — Posted on 2017-09-08

1171 Trade-off shapes diversity in eco-evolutionary dynamics

Farahpour, F.; Saeedghalati, M.; Brauer, V.; Hoffmann, D.

10.1101/184432 — bioinformatics — Posted on 2017-09-08

1172 Neural source dynamics of brain responses to continuous stimuli: speech processing from acoustics to comprehension

Brodbeck, C.; Presacco, A.; Simon, J. Z.

10.1101/182881 — neuroscience — Posted on 2017-09-08

1173 Or22 allelic variation alone does not explain differences in discrimination of yeast-produced volatiles by D. melanogaster

Elya, C.; Quan, A. S.; Schiabor, K. M.; Eisen, M.

10.1101/186064 — genetics — Posted on 2017-09-08

1174 The theoretical molecular weight of NaYF4:RE upconversion nanoparticles

MacKenzie, L. E.; Goode, J. A.; Vakurov, A.; Nampi, P. P.; Saha, S.; Jose, G.; Millner, P. A.

10.1101/114744 — biophysics — Posted on 2017-09-08

1175 Enabling rapid cloud-based analysis of thousands of human genomes via Butler

Yakneen, S.; Waszak, S.; Gertz, M.; Korbel, J. O.; PCAWG Germline Cancer Genome Working Group, ; PCAWG Technical Working Group, ; ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Net,

10.1101/185736 — bioinformatics — Posted on 2017-09-08

1176 Two stochastic processes shape diverse senescence patterns in a single-cell organism

Steiner, U. K.; Lenart, A.; Ni, M.; Chen, P.; Song, X.; Taddei, F.; Lindner, A.; Vaupel, J.

10.1101/105387 — systems biology — Posted on 2017-09-08

1177 Glucocorticoid-Induced Metabolic Disturbances are Exacerbated in Obesity

Harvey, I.; Stephenson, E. J.; Redd, J. R.; Tran, Q. T.; Hochberg, I.; Qi, N.; Bridges, D.

10.1101/184507 — physiology — Posted on 2017-09-08

1178 Beyond excitation/inhibition imbalance in multidimensional models of neural circuit changes in brain disorders

O'Donnell, C.; Goncalves, J. T.; Portera-Cailliau, C.; Sejnowski, T. J.

10.1101/086363 — neuroscience — Posted on 2017-09-08

1179 Dynamic interhemispheric coordination in face processing

Lu, Z.; Guo, B.; Meng, M.

10.1101/151076 — neuroscience — Posted on 2017-09-08

1180 HIV disrupts CD34+ progenitors involved in T-cell differentiation

Tsukamoto, T.

10.1101/142539 — microbiology — Posted on 2017-09-08

1181 RNA-seq highlights parallel and contrasting patterns in the evolution of the nuclear genome of holo-mycoheterotrophic plants

Schelkunov, M. I.; Penin, A. A.; Logacheva, M. D.

10.1101/183202 — genomics — Posted on 2017-09-08

1182 Translating GWAS Findings Into Therapies For Depression And Anxiety Disorders: Drug Repositioning Using Gene-Set Analyses Reveals Enrichment Of Psychiatric Drug Classes

SO, H.-C.; LAU, A.; CHAU, C. K.-L.; WONG, S.-Y.

10.1101/132563 — genetics — Posted on 2017-09-08

1183 Dissecting HIV Virulence: Heritability Of Setpoint Viral Load, CD4+ T Cell Decline And Per-Parasite Pathogenicity

Bertels, F.; Marzel, A.; Leventhal, G.; Mitov, V.; Fellay, J.; Gunthard, H. F.; Boni, J.; Yerly, S.; Klimkait, T.; Aubert, V.; Battegay, M.; Rauch, A.; Cavassini, M.; Calmy, A.; Bernasconi, E.; Schmid, P.; Scherrer, A.; Muller, V.; Bonhoeffer, S.; Kouyos, R.; Regoes, R. R.; Swiss HIV Cohort Study,

10.1101/140012 — evolutionary biology — Posted on 2017-09-08

1184 Associations Of Prenatal And Postnatal Growth With Insulin-Like Growth Factor-I Levels In Pre-Adolescence

Arathimos, R.; Macdonald-Wallis, C.; Bull, C. J.; Holly, J. M. P.; Oken, E.; Kramer, M. S.; Gusina, N.; Bogdanovich, N.; Vilchuck, K.; Patel, R.; Martin, R. M.; Tilling, K.

10.1101/144493 — epidemiology — Posted on 2017-09-08

1185 canvasXpress: A versatile interactive high-resolution scientific multi-panel visualization toolkit

Zhang, B.; Zhao, S.; Neuhaus, I.

10.1101/186213 — bioinformatics — Posted on 2017-09-08

1186 DEsingle: A new method for single-cell differentially expressed genes detection and classification

Miao, Z.; Zhang, X.

10.1101/173997 — bioinformatics — Posted on 2017-09-08

1187 KCC1 Activation protects Mice from the Development of Experimental Cerebral Malaria.

Hortle, E.; Brown, F.; Stephen, J.; Curtis, D.; McMorran, B.; Foote, S.; Burgio, G.

10.1101/186262 — microbiology — Posted on 2017-09-08

1188 A single Vibrionales 16S rRNA oligotype dominates the intestinal microbiome in two geographically separated Atlantic cod populations

Riiser, E. S.; Haverkamp, T. H. A.; Borgan, O.; Jakobsen, K. S.; Jentoft, S.; Star, B.

10.1101/186346 — microbiology — Posted on 2017-09-08

1189 A comprehensive profile of circulating RNAs in human serum

Umu, S. U.; Langseth, H.; Bucher-Jonannessen, C.; Fromm, B.; Keller, A.; Meese, E.; Lauritzen, M.; Leithaug, M.; Lyle, R.; Rounge, T.

10.1101/186320 — bioinformatics — Posted on 2017-09-08

1190 Statistical power of gene-set enrichment analysis is a function of gene set correlation structure

Swanson, D.

10.1101/186288 — bioinformatics — Posted on 2017-09-08

1191 A unified framework for dissecting the effects of common signals on functional and effective connectivity analyses: power, coherence, and Granger causality

Cohen, D.; Tsuchiya, N.

10.1101/186122 — neuroscience — Posted on 2017-09-08

1192 Infection via mosquito bite alters Zika virus replication kinetics in rhesus macaques

Dudley, D.; Newman, C.; Lalli, J.; Stewart, L.; Koening, M.; Weiler, A.; Semler, M.; Barry, G.; Zarbock, K.; Mohns, M.; Breitbach, M.; Schultz-Darken, N.; Peterson, E.; Newton, W.; Mohr, E.; Capuano, S.; Osorio, J.; O'Connor, S.; O'Connor, D.; Friedrich, T.; Aliota, M.

10.1101/186155 — microbiology — Posted on 2017-09-08

1193 An Algorithmic Information Calculus for Causal Discovery and Reprogramming Systems

Zenil, H.; Kiani, N. A.; Marabita, F.; Deng, Y.; Elias, S.; Schmidt, A.; Ball, G.; Tegner, J.

10.1101/185637 — systems biology — Posted on 2017-09-07

1194 Acceleration Of Nucleotide Semi-Global Alignment With Adaptive Banded Dynamic Programming

Suzuki, H.; Kasahara, M.

10.1101/130633 — bioinformatics — Posted on 2017-09-07

1195 Mercury concentrations in Double-crested Cormorant chicks across Canada

Lavoie, R. A.; Campbell, L. M.

10.1101/185280 — pharmacology and toxicology — Posted on 2017-09-07

1196 Basolateral amygdala glutamatergic neurons maintain aversive emotional salience

Sengupta, A.; Yau, J. O. Y.; Jean-Richard Dit Bressel, P.; Liu, Y.; Millan, E. Z.; Power, J. M.; McNally, G. P.

10.1101/186072 — neuroscience — Posted on 2017-09-07

Senden, M.; Reuter, N.; van den Heuvel, M.; Goebel, R.; Deco, G.; Gilson, M.

10.1101/185603 — neuroscience — Posted on 2017-09-07

1198 Inter-areal balanced amplification enhances signal propagation in a large-scale circuit model of the primate cortex

Joglekar, M. R.; Mejias, J. F.; Yang, G. R.; Wang, X.-J.

10.1101/186007 — neuroscience — Posted on 2017-09-07

1199 Origin of Slow Spontaneous Resting-State Neuronal Fluctuations in Brain Networks

Krishnan, G. P.; Gonzalez, O. C.; Bazhenov, M.

10.1101/186098 — neuroscience — Posted on 2017-09-07

1200 Or22 allelic variation alone does not explain differences in discrimination of yeast-produced volatiles by D. melanogaster

Elya, C.; Quan, A. S.; Schiabor, K. M.; Eisen, M.

10.1101/186064 — genetics — Posted on 2017-09-07

1201 Genome-Wide Association Studies Identify 15 Genetic Markers Associated with Marmite Taste Preference

Roos, T.; Kulemin, N.; Ahmetov, I.; Lasarow, A.; Grimaldi, K.

10.1101/185629 — genetics — Posted on 2017-09-07

1202 Cryo-EM structure of the bacterial actin AlfA reveals unique assembly and ATP-binding interactions and the absence of a conserved subdomain

Usluer, G.; Dimaio, F.; Yang, S.; Hansen, J. M.; Polka, J. K.; Mullins, R. D.; Kollman, J.

10.1101/186080 — biophysics — Posted on 2017-09-07

1203 A Library of Phosphoproteomic and Chromatin Signatures for Characterizing Cellular Responses to Drug Perturbations

Litichevskiy, L.; Peckner, R.; Abelin, J. G.; Asiedu, J. K.; Creech, A. L.; Davis, J. F.; Davison, D.; Dunning, C. M.; Egertson, J. D.; Egri, S.; Gould, J.; Ko, T.; Johnson, S. A.; Lahr, D. L.; Lam, D.; Liu, Z.; Lyons, N. J.; Lu, X.; MacLean, B. X.; Mungenast, A. E.; Officer, A.; Natoli, T. E.; Papanastasiou, M.; Patel, J.; Sharma, V.; Toder, C.; Tubelli, A. A.; Young, J. Z.; Carr, S. A.; Golub, T. R.; Subramanian, A.; MacCoss, M. J.; Tsai, L.-H.; Jaffe, J.

10.1101/185918 — systems biology — Posted on 2017-09-07

1204 Activation of tumor suppressor genes in breast cancer cells by a synthetic chromatin effector

Olney, K. C.; Nyer, D. B.; Wilson Sayres, M. A.; Haynes, K.

10.1101/186056 — synthetic biology — Posted on 2017-09-07

1205 Functional characterization of the ABF gene family in upland cotton (Gossypium hirsutum L.)

Kerr, T. C. C.; Abdel-Mageed, H.; Kang, M.; Cryer, D.; Allen, R. D.

10.1101/186015 — plant biology — Posted on 2017-09-07

1206 Chromatin run-on reveals nascent RNAs that differentiate normal and malignant brain tissue

Chu, T.; Rice, E. J.; Booth, G. T.; Salamanca, H. H.; Wang, Z.; Core, L. J.; Longo, S. L.; Corona, R. J.; Chin, L. S.; Lis, J. T.; Kwak, H.; Danko, C.

10.1101/185991 — genomics — Posted on 2017-09-07

1207 Using gene genealogies to localize rare variants associated with complex traits in diploid populations

Karunarathna, C. B.; Graham, J.

10.1101/182345 — genetics — Posted on 2017-09-07

1208 Src42A required for collective border cell migration in vivo

Sallak, Y.; Torres, A. Y.; Yin, H.; Montell, D.

10.1101/186049 — cell biology — Posted on 2017-09-07

1209 HiCTMap: Detection and Analysis of Chromosome Territory Structure and Position by High-throughput Imaging

Jowhar, Z. M.; Gudla, P.; Shachar, S.; Wangsa, D.; Russ, J. L.; Pegoraro, G.; Ried, T.; Raznahan, A.; Misteli, T.

10.1101/185942 — cell biology — Posted on 2017-09-07

1210 Investigation of the role of a macromolecular complex of CFTR-NHERF2-LPA2 in the fluid hemostasis and inflammatory responses in intestinal epithelial cells

Kong, S.; Zhang, W.

10.1101/186023 — pathology — Posted on 2017-09-07

1211 The number of orphans in yeast and fly is drastically reduced by using combining searches in both proteomes and genomes

Basile, W.; Elofsson, A.

10.1101/185983 — bioinformatics — Posted on 2017-09-07

1212 Hsf1 phosphorylation generates cell-to-cell variation in Hsp90 levels and promotes phenotypic plasticity

Zheng, X.; Beyzavi, A.; Krakowiak, J.; Patel, N.; Khalil, A. S.; Pincus, D.

10.1101/185934 — systems biology — Posted on 2017-09-07

1213 An Algorithmic Information Calculus for Causal Discovery and Reprogramming Systems

Zenil, H.; Kiani, N. A.; Marabita, F.; Deng, Y.; Elias, S.; Schmidt, A.; Ball, G.; Tegner, J.

10.1101/185637 — systems biology — Posted on 2017-09-07

1214 Presurgical language fMRI: Current practices and patient outcomes in epilepsy surgical planning

Benjamin, C. F. A.; Li, A. X.; Blumenfeld, H.; Constable, R. T.; Alkawadri, R.; Bickel, S.; Helmstaedter, C.; Meletti, S.; Bronen, R.; Warfield, S. K.; Peters, J. M.; Reutens, D. C.; Polczynska, M.; Spencer, D. D.; Hirsch, L. J.

10.1101/185835 — neuroscience — Posted on 2017-09-07

1215 When a rose is not a rose: Pyramidal neurons respond differently in healthy and epileptic human neocortex

Joseph, K.; Ravi, V. M.; Argiti, K.; Feuerstein, T. J.; Zentner, J.; Migliore, R.; Migliore, M.; Hofmann, U. G.

10.1101/185710 — neuroscience — Posted on 2017-09-07

1216 Sparse interaction between oligodendrocyte precursor cells (NG2+ cells) and nodes of Ranvier in the central nervous system

De Biase, L. M.; Pucak, M. L.; Kang, S. H.; Rodriguez, S. N.; Bergles, D. E.

10.1101/185801 — neuroscience — Posted on 2017-09-07

1217 Cued reactivation during slow-wave sleep induces connectivity changes related to memory stabilization.

Berkers, R. M. W. J.; Ekman, M.; van Dongen, E. V.; Takashima, A.; Barth, M.; Paller, K.; Fernandez, G.

10.1101/185611 — neuroscience — Posted on 2017-09-07

1218 ERAASR: An algorithm for removing electrical stimulation artifacts from multielectrode array recordings

O'Shea, D. J.; Shenoy, K. V.

10.1101/185850 — neuroscience — Posted on 2017-09-07

1219 The Impact of In-Scanner Head Motion on Structural Connectivity Derived from Diffusion Tensor Imaging

Baum, G. L.; Roalf, D. R.; Cook, P. A.; Ciric, R.; Rosen, A. F. G.; Xia, C.; Elliot, M. A.; Ruparel, K.; Verma, R.; Tunc, B.; Gur, R. C.; Gur, R. E.; Bassett, D. S.; Satterthwaite, T. D.

10.1101/185397 — neuroscience — Posted on 2017-09-07

1220 Temporal dissociation of salience and prediction error responses to appetitive and aversive taste

Hird, E.; El-Deredy, W.; Jones, A.; Talmi, D.

10.1101/184341 — neuroscience — Posted on 2017-09-07

1221 Cueing memory during sleep is optimal during slow-oscillatory up-states

Göldi, M.; van Poppel, E.; Rasch, B.; Schreiner, T.

10.1101/185264 — neuroscience — Posted on 2017-09-07

1222 Administration of orexin A in the posterior paraventricular nucleus of the thalamus promotes cocaine-seeking behavior and is associated with hypothalamic activation

Matzeu, A.; Martin-Fardon, R.

10.1101/185538 — neuroscience — Posted on 2017-09-07

1223 Dynorphin counteracts orexin in the paraventricular nucleus of the thalamus: cellular and behavioral evidence

Matzeu, A.; Kallupi, M.; George, O.; Schweitzer, P.; Martin-Fardon, R.

10.1101/185520 — neuroscience — Posted on 2017-09-07

1224 Temperate phages as frequency-dependent weapons in bacterial competition

Li, X.-Y.; Lachnit, T.; Fraune, S.; Bosch, T. C. G.; Traulsen, A.; Sieber, M.

10.1101/185751 — microbiology — Posted on 2017-09-07

1225 Machine learning leveraging genomes from metagenomes identifies influential antibiotic resistance genes in the infant gut microbiome

Rahman, S. F.; Olm, M. R.; Morowitz, M. J.; Banfield, J. F.

10.1101/185348 — microbiology — Posted on 2017-09-07

1226 Complemented palindrome small RNAs first discovered from SARS coronavirus

Liu, C.; Chen, Z.; Shen, W.; Sun, Y.; Wu, Z.; Hu, Y.; Yu, D.; Bu, W.; Wang, Q.; Gao, S.

10.1101/185876 — genomics — Posted on 2017-09-07

1227 LeafCutter: Annotation-free quantification of RNA splicing

Li, Y. I.; Knowles, D. A.; Humphrey, J.; Barbeira, A. N.; Dickinson, S. P.; Im, H. K.; Pritchard, J. K.

10.1101/044107 — genomics — Posted on 2017-09-07

1228 Indirect assortative mating for human disease and longevity

Rawlik, K.; Canela-Xandri, O.; Tenesa, A.

10.1101/185207 — genetics — Posted on 2017-09-07

1229 The role of hybridization during ecological divergence of southwestern white pine (Pinus strobiformis) and limber pine (P. flexilis)

Menon, M.; Bagley, J. C.; Friedline, C.; Whipple, A. V.; Schoettle, A. W.; Leal-Saenz, A.; Wehenkel, C.; Molina-Freaner, F.; Flores-Renteria, L.; Gonzalez-Elizondo, M. S.; Sniezko, R. A.; Cushman, S. A.; Waring, K. M.; Eckert, A. J.

10.1101/185728 — evolutionary biology — Posted on 2017-09-07

1230 Likelihood analysis of population genetic data under coalescent models: computational and inferential aspects

Rousset, F.; Beeravolu, C. R.; Leblois, R.

10.1101/185702 — evolutionary biology — Posted on 2017-09-07

1231 Pan-arthropod analysis reveals somatic piRNAs as an ancestral TE defence

Lewis, S. H.; Quarles, K. A.; Yang, Y.; Tanguy, M.; Frezal, L.; Smith, S. A.; Sharma, P. P.; Cordaux, R.; Gilbert, C.; Giraud, I.; Collins, D. H.; Zamore, P. D.; Miska, E. A.; Sarkies, P.; Jiggins, F. M.

10.1101/185694 — evolutionary biology — Posted on 2017-09-07

1232 Highly expressed genes evolve under strong epistasis from a proteome-wide scan in E. coli

Girard, E.; Dasmeh, P.; Serohijos, A.

10.1101/185967 — evolutionary biology — Posted on 2017-09-07

1233 Complex models of sequence evolution require accurate estimators as exemplified with the invariable site plus Gamma model

Nguyen, L. T.; von Haeseler, A.; Minh, B. Q.

10.1101/185652 — evolutionary biology — Posted on 2017-09-07

1234 Nitrogen conservation, conserved: 46 million years of N-recycling by the core symbionts of turtle ants

Hu, Y; Sanders, J; Łukasik, P; D'Amelio, C; Millar, J; Vann, D; Lan, Y; Newton, J; Schotanus, M; Wertz, J; Kronauer, D; Pierce, N; Moreau, C; Engel, P; Russell, J

10.1101/185314 — evolutionary biology — Posted on 2017-09-07

1235 Modeling Marek’s disease virus transmission: a framework for evaluating the impact of farming practices and evolution on disease

Kennedy, D. A.; Dunn, P. A.; Read, A. F.

10.1101/185785 — ecology — Posted on 2017-09-07

1236 Enabling rapid cloud-based analysis of thousands of human genomes via Butler

Yakneen, S.; Waszak, S.; Gertz, M.; Korbel, J. O.

10.1101/185736 — bioinformatics — Posted on 2017-09-07

1237 A sequence-based, deep learning model accurately predicts RNA splicing branchpoints

Paggi, J. M.; Bejerano, G.

10.1101/185868 — bioinformatics — Posted on 2017-09-07

1238 mosdepth: quick coverage calculation for genomes and exomes

Pedersen, B. S.; Quinlan, A.

10.1101/185843 — bioinformatics — Posted on 2017-09-07

1239 Universal Transcriptional Responses to Different Modalities of Traumatic Stress as a Measure of Stress Exposure

Jacobson, M. L.; Kim, L. A.; Rosati, B.; McKinnon, D.

10.1101/185926 — physiology — Posted on 2017-09-07

1240 AFQ-Browser: Supporting reproducible human neuroscience research through browser-based visualization tools

Yeatman, J. D.; Richie-Halford, A.; Smith, J. K.; Rokem, A.

10.1101/182402 — neuroscience — Posted on 2017-09-06

1241 Multimodal Surface Matching with Higher-Order Smoothness Constraints

Robinson, E. C.; Garcia, K.; Glasser, M. F.; Chen, Z.; Coalson, T. S.; Makropoulos, A.; Bozek, J.; Wright, R.; Schuh, A.; Webster, M.; Hutter, J.; Price, A.; Cordero-Grande, L.; Hughes, E.; Tusor, N.; Bayly, P. V.; Van Essen, D. C.; Edwards, A. D.; Smith, S. M.; Hajnal, J.; Jenkinson, M.; Glocker, B.; Rueckert, D.

10.1101/178962 — neuroscience — Posted on 2017-09-07

1242 Low Perfusion Compartments in Glioblastoma Quantified by Advanced Magnetic Resonance Imaging: Correlation with Patient Survival

Li, C.; Yan, J.-L.; Torheim, T.; McLean, M. A.; Boonzaier, N. R.; Huang, Y.; Yuan, J.; Van Dijken, B. R. J.; Matys, T.; Markowetz, F.; Price, S. J.

10.1101/180521 — neuroscience — Posted on 2017-09-07

1243 Dynamic patterns of cortical expansion during folding of the preterm human brain

Garcia, K. E.; Robinson, E. C.; Alexopoulos, D.; Dierker, D. L.; Glasser, M. F.; Coalson, T. S.; Ortinau, C. M.; Rueckert, D.; Taber, L. A.; Van Essen, D. C.; Rogers, C. E.; Smyser, C. D.; Bayly, P. V.

10.1101/185389 — neuroscience — Posted on 2017-09-07

1244 Alpha oscillations control cortical gain by modulating excitatory-inhibitory background activity.

Peterson, E. J.; Voytek, B.

10.1101/185074 — neuroscience — Posted on 2017-09-07

1245 A synthetic biology approach to probing nucleosome symmetry

Ichikawa, Y.; Connelly, C. F.; Appleboim, A.; Miller, T. C.; Jacobi, H.; Abshiru, N. A.; Chou, H.-J.; Chen, Y.; Sharma, U.; Zheng, Y.; Thomas, P. M.; Chen, H. V.; Bajaj, V.; Müller, C. W.; Kelleher, N. L.; Friedman, N.; Bolon, D. N.; Rando, O. J.; Kaufman, P. D.

10.1101/170811 — molecular biology — Posted on 2017-09-06

1246 Impeding transcription of expanded microsatellite repeats by deactivated Cas9

Pinto, B.; Saxena, T.; Oliveira, R.; Mendez-Gomez, H. R.; Cleary, J. D.; Denes, L. T.; McConnell, O.; Arboleda, J.; Xia, G.; Swanson, M.; Wang, E. T.

10.1101/185496 — molecular biology — Posted on 2017-09-07

1247 Cytokinin signaling alters acid-fast staining of Mycobacterium tuberculosis

Samanovic, M. I.; Hsu, H.-C.; Jones, M. B.; Jones, V.; McNeil, M. R.; Becker, S. H.; Zhang, S.; Jordan, A. T.; Strnad, M.; Jackson, M.; Li, H.; Darwin, K. H.

10.1101/168815 — microbiology — Posted on 2017-09-07

1248 Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

Thybert, D.; Roller, M.; Navarro, F. C. P.; Fiddes, I.; Streeter, I.; Feig, C.; Martin-Galvez, D.; Kolmogorov, M.; Janousek, V.; Akanni, W.; Aken, B.; Aldridge, S.; Chakrapani, V.; Chow, W.; Clarke, L.; Cummins, C.; Doran, A.; Dunn, M.; Goodstadt, L.; Howe, K.; Howell, M.; Josselin, A.-A.; Karn, R. C.; Laukaitis, C. M.; Jingtao, L.; Martin, F.; Muffato, M.; Quail, M. A.; Sisu, C.; Stanke, M.; Stefflova, K.; Van Oosterhout, C.; Veyrunes, F.; Ward, B.; Yang, F.; Yazdanifar, G.; Zadissa, A.; Adams, D.; Brazma, A.; Gerstein, M.; Paten, B.; Pham, S.; Keane, T.; Odom, D. T.; Flicek, P.

10.1101/158659 — genomics — Posted on 2017-09-07

1249 Major flaws in "Identification of individuals by trait prediction using whole-genome sequencing data"

Erlich, Y.

10.1101/185330 — genomics — Posted on 2017-09-07

1250 Major flaws in "Identification of individuals by trait prediction using whole-genome sequencing data"

Erlich, Y.

10.1101/185330 — genomics — Posted on 2017-09-07

1251 Trendy: Segmented regression analysis of expression dynamics for high-throughput ordered profiling experiments

Bacher, R.; Leng, N.; Chu, L.-F.; Thomson, J.; Kendziorski, C.; Stewart, R.

10.1101/185413 — genomics — Posted on 2017-09-07

1252 Correction of autoimmune IL2RA mutations in primary human T cells using non-viral genome targeting

Roth, T. L.; Yu, R.; Shifrut, E.; Hiatt, J.; Li, H.; Schumann, K.; Tobin, V.; Ferris, A. M.; Chen, J.; Schickel, J.-N.; Pellerin, L.; Carmody, D.; Alkorta-Aranburu, G.; Del Gaudio, D.; Cho, M.; Matsumoto, H.; Morell, M.; Mao, Y.; Nguyen, D.; Quadros, R.; Gurumurthy, C.; Smith, B.; Haugwitz, M.; Hughes, S. H.; Weissman, J.; May, A. P.; Kupfer, G.; Greeley, S.; Bacchetta, R.; Meffre, E.; Roncarolo, M. G.; Romberg, N.; Herold, K. C.; Leonetti, M. D.; Marson, A.

10.1101/183418 — genetics — Posted on 2017-09-06

1253 Genetic Analysis of Lodging in Diverse Maize Hybrids

Larsson, S. J.; Peiffer, J. A.; Edwards, J. W.; Ersoz, E. S.; Flint-Garcia, S. A.; Holland, J. B.; McMullen, M. D.; Tuinstra, M. R.; Romay, C.; Buckler, E. S.

10.1101/185769 — genetics — Posted on 2017-09-07

1254 Transcriptional signatures of schizophrenia in hiPSC-derived NPCs and neurons are concordant with signatures from post mortem adult brains

Hoffman, G. E.; Hartley, B. J.; Flaherty, E.; Ladran, I.; Gochman, P.; Ruderfer, D.; Stahl, E. A.; Rapoport, J.; Sklar, P.; Brennand, K. J.

10.1101/185546 — genetics — Posted on 2017-09-07

1255 Global DNA methylation, as estimated in blood samples, does not correlate with variations of body condition, anatomical features and hematological parameters in American bullfrogs (Lithobates catesbeianus) kept captive under distinct environmental conditions.

Ayala-Garcia, B.; Fuentes-Farias, A. L.; Gutierrez-Ospina, G.

10.1101/156265 — evolutionary biology — Posted on 2017-09-06

1256 A Multidisciplinary Approach to Explain Biological Aging and Longevity

Augsburger, B. N.

10.1101/045633 — evolutionary biology — Posted on 2017-09-07

1257 Estimating the Mutational Fitness Effects Distribution during early HIV infection

Bons, E.; Regoes, R. R.; Bertels, F.

10.1101/185678 — evolutionary biology — Posted on 2017-09-07

1258 Collateral sensitivity is contingent on the repeatability of evolution

Nichol, D.; Rutter, J.; Bryant, C.; Jeavons, P.; Anderson, A.; Bonomo, R.; Scott, J.

10.1101/185892 — evolutionary biology — Posted on 2017-09-07

1259 Investigating causality in associations between education and smoking: A two-sample Mendelian randomization study

Gage, S. H.; Bowden, J.; Davey Smith, G.; Munafo, M. R.

10.1101/184218 — epidemiology — Posted on 2017-09-07

1260 Characterising undiagnosed chronic obstructive pulmonary disease: a systematic review and meta-analysis

Johnson, K. M.; Bryan, S.; Ghanbarian, S.; Sin, D. D.; Sadatsafavi, M.

10.1101/184986 — epidemiology — Posted on 2017-09-07

1261 Vaccine waning and mumps re-emergence in the United States

Lewnard, J. A.; Grad, Y. H.

10.1101/185454 — epidemiology — Posted on 2017-09-07

1262 Effect modification of FADS2 polymorphisms on the association between breastfeeding and intelligence: results from a collaborative meta-analysis

Hartwig, F. P.; Davies, N. M.; Horta, B. L.; Ahluwalia, T. S.; Bisgaard, H.; Bonnelykke, K.; Caspi, A.; Moffitt, T.; Poulton, R.; Sajjad, A.; Tiemeier, H. W.; Dalmau Bueno, A.; Guxens, M.; Bustamante Pineda, M.; Santa-Marina, L.; Parker, N.; Paus, T.; Pausova, Z.; Lauritzen, L.; Schnurr, T. M.; Michaelsen, K. F.; Hansen, T.; Oddy, W.; Pennell, C. E.; Warrington, N. M.; Davey Smith, G.; Victora, C. G.

10.1101/184234 — epidemiology — Posted on 2017-09-07

1263 Dose-dependent effects of inhaled corticosteroids on bone mineral density in postmenopausal women with asthma or COPD: A registry-based cohort study

Chen, W.; Johnson, K. M.; FitzGerald, J. M.; Sadatsafavi, M.; Leslie, W. D.

10.1101/184937 — epidemiology — Posted on 2017-09-07

1264 Relative quantification of Porphyromonas gingivalis, Treponema denticola, Tannerella forsythia and Aggregatibacter actinomycetemcomitans high-risk bacterial species in Romanian patients evaluated for periodontal disease

Cosac, I. C.; Ionica, C.; Ratiu, A. C.; Savu, L.

10.1101/184770 — epidemiology — Posted on 2017-09-07

1265 Using social media to quantify spatial and temporal dynamics of wildlife tourism activities

Mancini, F.; Coghill, G. M.; Lusseau, D.

10.1101/093112 — ecology — Posted on 2017-09-07

1266 dmrad51/spnA mutant exhibit defects during somatic stages of developmental and show enhanced genomic damage, cell death and low temperature sensitivity

Khan, C.; Muliyil, S.; Ayyub, C.; Rao, B. J.

10.1101/180737 — developmental biology — Posted on 2017-09-06

1267 High-Resolution Dissection of Conducive Reprogramming Trajectory to Ground State Pluripotency

Zviran, A.; Mor, N.; Rais, Y.; Gingold, H.; Peles, S.; Chomsky, E.; Viukov, S.; Buenrostro, J. D.; Weinberger, L.; Manor, Y. S.; Krupalnik, V.; Zerbib, M.; Hezroni, H.; Jaitin, D. A.; Larastiaso, D.; Gilad, S.; Benjamin, S.; Mousa, A.; Ayyash, M.; Sheban, D.; Bayerl, J.; Aguilera Castrejon, A.; Massarwa, R.; Maza, I.; Hanna, S.; Amit, I.; Stelzer, Y.; Ulitsky, I.; Greenleaf, W. J.; Pilpel, Y.; Novershtern, N.; Hanna, J. H.

10.1101/184135 — developmental biology — Posted on 2017-09-07

1268 Drosophila beta-Tubulin 97EF is upregulated at low temperature and stabilizes microtubules

Myachina, F.; Bosshardt, F.; Bischof, J.; Kirschmann, M.; Lehner, C. F.

10.1101/185827 — developmental biology — Posted on 2017-09-07

1269 CDK1 and PLK1 co-ordinate the disassembly and re-assembly of the Nuclear Envelope in vertebrate mitosis.

de Castro, I. J.; Sales Gil, R.; Ligammari, L.; Di Giacinto, M. L.; Vagnarelli, P.

10.1101/185660 — cell biology — Posted on 2017-09-07

1270 Hemodynamic forces can be accurately measured in vivo with optical tweezers

Harlepp, S.; Thalmann, F.; Follain, G.; Goetz, J. G.

10.1101/150367 — biophysics — Posted on 2017-09-07

1271 CPdock: The Complementarity Plot for Docking of Proteins: Implementing Multi-dielectric Continuum Electrostatics

Basu, S.

10.1101/185686 — bioinformatics — Posted on 2017-09-07

1272 iSeg: an efficient algorithm for segmentation of genomic and epigenomic data

Girimurugan, S. B.; Liu, Y.; Lung, P.-Y.; Vera, D.; Dennis, J.; Bass, H.; Zhang, J.

10.1101/184515 — bioinformatics — Posted on 2017-09-07

1273 Integrated transcriptome and epigenome analyses identify alternative splicing as a novel candidate linking histone modifications to embryonic stem cell fate decision

Xu, Y.; Jin, G.; Liu, L.; Guo, D.; Zhou, X.

10.1101/181875 — bioinformatics — Posted on 2017-09-07

1274 Channel crosstalk correction in suspension and imaging mass cytometry

Chevrier, S.; Crowell, H.; Zanotelli, V. R. T.; Engler, S.; Robinson, M. D.; Bodenmiller, B.

10.1101/185744 — bioinformatics — Posted on 2017-09-07

1275 BraCeR: Reconstruction of B-cell receptor sequences and clonality inference from single-cell RNA-sequencing

Lindeman, I.; Emerton, G.; Sollid, L. M.; Teichmann, S.; Stubbington, M. J. T.

10.1101/185504 — bioinformatics — Posted on 2017-09-07

1276 A Methodology for Evaluating the Performance of Alerting and Detection Algorithms Running on Continuous Patient Data

Eshelman, L. J.; Xu-Wilson, M.; Gross, B.; Nielsen, L.; Saeed, M.; Frassica, J. J.

10.1101/182154 — bioinformatics — Posted on 2017-09-07

1277 Paratope Prediction using Convolutional and Recurrent Neural Networks

Liberis, E.; Velickovic, P.; Sormanni, P.; Vendruscolo, M.; Lio, P.

10.1101/185488 — bioinformatics — Posted on 2017-09-07

1278 Polysaccharide-mediated synthesis of melanins from serotonin and other 5-hydroxy indoles

Vercruysse, K.; Clark, A.; Alatas, N.; Brooks, D.; Hamza, N.; Whalen, M.

10.1101/184002 — biochemistry — Posted on 2017-09-07

1279 Glucocorticoid-Induced Metabolic Disturbances are Exacerbated in Obesity

Harvey, I.; Stephenson, E. J.; Redd, J. R.; Tran, Q. T.; Hochberg, I.; Qi, N.; Bridges, D.

10.1101/184507 — physiology — Posted on 2017-09-06

1280 HIV-1 initiates genomic RNA packaging in a unique subset of host RNA granules

Tanaka, M.; Barajas, B. C.; Robinson, B. A.; Phuong, D. J.; Chutiraka, K.; Reed, J. C.; Lingappa, J. R.

10.1101/183855 — microbiology — Posted on 2017-09-06

1281 GWAS meta-analysis (N=279,930) identifies new genes and functional links to intelligence

Savage, J. E.; Jansen, P. R.; Stringer, S.; Watanabe, K.; Bryois, J.; de Leeuw, C. A.; Nagel, M.; Awasthi, S.; Barr, P. B.; Coleman, J. R. I.; Grasby, K. L.; Hammerschlag, A. R.; Kaminski, J.; Karlsson, R.; Krapohl, E.; Lam, M.; Nygaard, M.; Reynolds, C. A.; Trampush, J. W.; Young, H.; Zabaneh, D.; Hägg, S.; Hansell, N. K.; Karlsson, I. K.; Linnarsson, S.; Montgomery, G. W.; Munoz-Manchado, A. B.; Quinlan, E. B.; Schumann, G.; Skene, N.; Webb, B. T.; White, T.; Arking, D. E.; Attix, D. K.; Avramopoulos, D.; Bilder, R. M.; Bitsios, P.; Burdick, K. E.; Cannon, T. D.; Chiba-Falek, O.; Chr

10.1101/184853 — genetics — Posted on 2017-09-06

1282 A Cautionary Tail: Changes in Integrin Behavior with Labeling

Galbraith, C. G.; Davidson, M. W.; Galbraith, J. A.

10.1101/158618 — cell biology — Posted on 2017-09-06

1283 SQUID: Transcriptomic Structural Variation Detection from RNA-seq

Ma, C.; Shao, M.; Kingsford, C.

10.1101/162776 — bioinformatics — Posted on 2017-09-06

1284 Humpback whales of the Persian Gulf

Dakhteh, S. M. H.; Ranjbar, S.; Moazeni, M.; Mohsenian, N.; Delshab, H.; Moshiri, H.; Nabavi, S. M. B.; Van Waerebeek, K.

10.1101/185033 — zoology — Posted on 2017-09-06

1285 Global connectivity of the frontoparietal cognitive control network is related to depression symptoms in undiagnosed individuals

Schultz, D. H.; Ito, T.; Solomyak, L. I.; Chen, R. H.; Mill, R. D.; Kulkarni, K. R.; Cole, M. W.

10.1101/185306 — neuroscience — Posted on 2017-09-06

1286 The Sync/deSync model: How a synchronized hippocampus and a de-synchronized neocortex code memories

Parish, G.; Hanslmayr, S.; Bowman, H.

10.1101/185231 — neuroscience — Posted on 2017-09-06

1287 Medial frontal theta is entrained to the lick cycle

Amarante, L. M.; Caetano, M. S.; Laubach, M.

10.1101/144550 — neuroscience — Posted on 2017-09-06

1288 Why Does the Neocortex Have Layers and Columns, A Theory of Learning the 3D Structure of the World

Hawkins, J.; Ahmad, S.; Cui, Y.

10.1101/162263 — neuroscience — Posted on 2017-09-06

1289 Editing of the Human TRIM5 Gene to Introduce HIV-1 Restrictive Mutations Using CRISPR-Cas9

Dufour, C.; Claudel, A.; Joubarne, N.; Merindol, N.; Maisonnet, T.; Plourde, M. B.; Berthoux, L.

10.1101/185298 — microbiology — Posted on 2017-09-06

1290 Major flaws in "Identification of individuals by trait prediction using whole-genome"

Erlich, Y.

10.1101/185330 — genomics — Posted on 2017-09-06

1291 GWAS meta-analysis (N=279,930) identifies new genes and functional links to intelligence

10.1101/184853 — genetics — Posted on 2017-09-06

1292 Novel causative genes for heritable pulmonary arterial hypertension

Gräf, S.; Haimel, M.; Bleda, M.; Hadinnapola, C.; Li, W.; Hodgson, J.; Liu, B.; Salmon, R. M.; Southwood, M.; UK PAH Cohort Study Consortium, ; NIHR BioResource - Rare Disease Consortium, ; Southgate, L.; Machado, R. D.; Martin, J. M.; Treacy, C. M.; Yates, K.; Daugherty, L. C.; Shamardina, O.; Whitehorn, D.; Holden, S.; Aldred, M.; Bogaard, H. J.; Church, C.; Coghlan, G.; Condliffe, R.; Corris, P. A.; Danesino, C.; Eyries, M.; Gall, H.; Ghio, S.; Ghofrani, H.-A.; Gibbs, J. S. R.; Girerd, B.; Houweling, A. C.; Howard, L.; Humbert, M.; Kiely, D. G.; Kovacs, G.; MacKenzie Ross, R. V.;

10.1101/185272 — genetics — Posted on 2017-09-06

1293 Dynamic Spatiotemporal Organization of Exocytosis During Cellular Shape Change

Urbina, F.; Gomez, S.; Gupton, S. L.

10.1101/185249 — cell biology — Posted on 2017-09-06

1294 Molecular characterization of breast cancer cell response to metabolic drugs

Trilla-Fuertes, L.; Gamez-Pozo, A.; Arevalillo, J. M.; Diaz-Almiron, M.; Prado-Vazquez, G.; Zapater-Moros, A.; Navarro, H.; Aras-Lopez, R.; Dapia, I.; Lopez-Vacas, R.; Nanni, P.; Llorente-Armijo, S.; Arias, P.; Borobia, A. M.; Main, P.; Feliu, J.; Espinosa, E.; Fresno Vara, J. A.

10.1101/185082 — systems biology — Posted on 2017-09-06

1295 Multi-generational silencing dynamics control cell aging

Li, Y.; Jin, M.; O'Laughlin, R.; Bittihn, P.; Tsimring, L. S.; Pillus, L.; Hasty, J.; Hao, N.

10.1101/102210 — systems biology — Posted on 2017-09-06

1296 Rapid feedback responses are flexibly coordinated across arm muscles to support goal-directed reaching

Weiler, J.; Gribble, P. L.; Pruszynski, J. A.

10.1101/143008 — neuroscience — Posted on 2017-09-06

1297 A rational theory of set size effects in working memory and attention

van den Berg, R.; Ma, W. J.

10.1101/151365 — neuroscience — Posted on 2017-09-06

1298 The cycad coralloid root contains a diverse endophytic bacterial community including cyanobacteria encoding specific biosynthetic gene clusters

Barona-Gomez, F.; Corona-Gomez, A.; Cruz-Morales, P.; Gutierrez-Garcia, K. G.; Selem-Mojica, N.; Perez-Farrera, M. A.; Cibrian-Jaramillo, A.

10.1101/121160 — evolutionary biology — Posted on 2017-09-06

1299 The AAA Protein Msp1 Mediates Clearance of Excess Tail-Anchored Proteins from the Peroxisomal Membrane

Weir, N. R.; Kamber, R. A.; Martenson, J. S.; Denic, V.

10.1101/136572 — cell biology — Posted on 2017-09-06

1300 Integrative structure investigation on the architecture of human Importin4_histone H3/H4_Asf1a complex and its histone H3 tail binding

Yoon, J.; Kim, S. J.; An, S.; Leitner, A.; Jung, T.; Aebersold, R.; Hebert, H.; Cho, U.-S.; Song, J.-J.

10.1101/181321 — biochemistry — Posted on 2017-09-06

1301 Adaptive Cortical Parcellations for Source Reconstructed EEG/MEG Connectomes

Farahibozorg, S.-R.; Henson, R. N.; Hauk, O.

10.1101/097774 — neuroscience — Posted on 2017-09-06

1302 Analysis of shared heritability in common disorders of the brain

Anttila, V.; Bulik-Sullivan, B.; Finucane, H. K.; Walters, R.; Bras, J.; Duncan, L.; Escott-Price, V.; Falcone, G.; Gormley, P.; Malik, R.; Patsopoulos, N.; Ripke, S.; Wei, Z.; Yu, D.; Lee, P.; IGAP consortium, ; IHGC consortium, ; ILAE Consortium on Complex Epilepsies, ; IMSGC consortium, ; IPDGC consortium, ; METASTROKE and ICH Studies of the ISGC, ; ADHD Working Group of the PGC, ; ASD Working Group of the PGC, ; Bipolar Disorders Working Group of the PGC, ; Eating Disorders Working Group of the PGC, ; Major Depressive Disorder Working Group of the PGC, ; OCD and TS Working Group

10.1101/048991 — genetics — Posted on 2017-09-06

1303 The duration of mitosis and daughter cell size are modulated by nutrients in budding yeast

Leitao, R. M.; Kellogg, D.

10.1101/080648 — cell biology — Posted on 2017-09-06

1304 Intraocular injection of ES cell-derived neural progenitors improve visual function in retinal ganglion cell-depleted mouse models

Mundackal Sivaraman, D.; Vazhanthodi Abdul, R.; Schmidt, T.; Soundararajan, L.; Hattar, S.; James, J.

10.1101/114678 — cell biology — Posted on 2017-09-06

1305 Individual alpha peak frequency predicts 10 Hz flicker effects on selective attention

Gulbinaite, R.; van Viegen, T.; Wieling, M.; Cohen, M. X.; VanRullen, R.

10.1101/185132 — neuroscience — Posted on 2017-09-06

1306 Denitrifying metabolism of the methylotrophic marine bacterium Methylophaga nitratireducenticrescens strain JAM1

Mauffrey, F.; Cucaita, A.; Constant, P.; Villemur, R.

10.1101/180950 — microbiology — Posted on 2017-09-06

1307 Assessment of CD4 T Lymphocyte Cell Levels among Hepatitis B, C and E Viruses Negative Individuals in Ibadan, southwestern Nigeria

Adewumi, M. O.; Omoruyi, E. C.; Ifeora, I. M.; Bakarye, A. S.; Ogunwale, A. O.; Akere, A.; Faleye, T. O. C.; Adeniji, J. A.

10.1101/185165 — immunology — Posted on 2017-09-06

1308 Structural insights into the architecture of human Importin4_histone H3/H4_Asf1a complex and its histone H3 tail binding

Yoon, J.; Kim, S. J.; An, S.; Leitner, A.; Jung, T.; Aebersold, R.; Hebert, H.; Cho, U.-S.; Song, J.-J.

10.1101/181321 — biochemistry — Posted on 2017-09-06

1309 BacilloFlex: A modular DNA assembly toolkit for Bacillus subtilis synthetic biology

Wicke, N.; Radford, D.; Verrone, V.; Wipat, A.; French, C. E.

10.1101/185108 — synthetic biology — Posted on 2017-09-06

1310 Leveraging multiple datasets for deep leaf counting

Dobrescu, A.; Giuffrida, M. V.; Tsaftaris, S. A.

10.1101/185173 — plant biology — Posted on 2017-09-06

1311 Heart-brain interactions in the MR environment: characterization of the ballistocardiogram in EEG signals collected during simultaneous fMRI

Marino, M.; Liu, Q.; Del Castello, M.; Corsi, C.; Wenderoth, N.; Mantini, D.

10.1101/185181 — neuroscience — Posted on 2017-09-06

1312 The hominoid-specific gene DSCR4 is involved in regulation of human leukocyte migration

Saber, M. M.; Karimiavargani, M.; Hettiarachchi, N.; Hamada, M.; Uzawa, T.; Ito, Y.; Saitou, N.

10.1101/176503 — genetics — Posted on 2017-09-06

1313 FACT sets a barrier for cell fate reprogramming in C. elegans and Human

Kolundzic, E.; Ofenbauer, A.; Uyar, B.; Sommermeier, A.; Seelk, S.; He, M.; Baytek, G.; Akalin, A.; Diecke, S.; Lacadie, S. A.; Tursun, B.

10.1101/185116 — developmental biology — Posted on 2017-09-06

1314 Chromatin organization changes during the establishment and maintenance of the postmitotic state

Ma, Y.; Buttitta, L.

10.1101/184994 — developmental biology — Posted on 2017-09-06

1315 Fibroblast-derived HGF drives acinar lung cancer cell polarization through integrin-dependent RhoA-ROCK1 inhibition.

Datta, A.; Sandilands, E.; Mostov, K. E.; Bryant, D. M.

10.1101/185199 — cell biology — Posted on 2017-09-06

1316 Interleukin-1β and -6 release from immune cells by DOPA-based melanin as free pigment or complexed to carboxymethylcellulose

Vercruysse, K. P.; Farris, T. S.; Whalen, M. M.

10.1101/185140 — biochemistry — Posted on 2017-09-06

1317 Synthesis of a eukaryotic chromosome reveals a role for N6-methyladenine in nucleosome organization

Beh, L. Y.; Debelouchina, G. T.; Lindblad, K. A.; Kulej, K.; Hutton, E. R.; Bracht, J. R.; Sebra, R. P.; Garcia, B. A.; Muir, T. W.; Landweber, L. F.

10.1101/184929 — biochemistry — Posted on 2017-09-06

1318 Brain white matter structure and language ability in preschool-aged children

Walton, M.; Dewey, D.; Lebel, C.

10.1101/184978 — neuroscience — Posted on 2017-09-06

1319 Ectopic Expression of DNA Repair Enzymes Modulates Survival following Ultraviolet Irradiation Challenge

Garg, S. P.; Minko, I. G.; Coskun, E.; Erdem, O.; Jaruga, P.; Dizdaroglu, M.; Lloyd, R. S.

10.1101/185058 — microbiology — Posted on 2017-09-06

1320 Assessment of DNA methylation patterns in the bone and cartilage of a nonhuman primate model of osteoarthritis

Housman, G.; Havill, L. M.; Quillen, E. E.; Comuzzie, A. G.; Stone, A. C.

10.1101/184879 — genetics — Posted on 2017-09-06

1321 Virtual Genome Walking: Generating gene models for the salamander Ambystoma mexicanum

Evans, T.; Johnson, A. D.; Loose, M. D.

10.1101/185157 — bioinformatics — Posted on 2017-09-06

1322 Evolution with a seed bank: the population genetic consequences of microbial dormancy

Shoemaker, W. R.; Lennon, J. T.

10.1101/156356 — microbiology — Posted on 2017-09-05

1323 Identifying Pleiotropic Effects: A Two-Stage Approach Using Genome-Wide Association Meta-Analysis Data

Chen, X.; Hsu, Y.-H.

10.1101/184895 — genetics — Posted on 2017-09-05

1324 Rescue of Conformational Dynamics in Enzyme Catalysis by Directed Evolution

Otten, R.; Liu, L.; Kenner, L. R.; Clarkson, M. W.; Mavor, D.; Tawfik, D. S.; Kern, D.; Fraser, J. S.

10.1101/185009 — biophysics — Posted on 2017-09-05

1325 Climbing Legumes: An Underutilized Resource With Significant Potential to Intensify Farming on Terrace Walls (FTW) for Smallholder Farmers

Clark, J. C.; Raizada, M. N.

10.1101/184952 — plant biology — Posted on 2017-09-05

1326 Elucidation of the 14-3-3ζ interactome reveals critical roles of RNA splicing factors during adipogenesis

Mugabo, Y.; Sadeghi, M.; Fang, N. N.; Mayor, T.; Lim, G.

10.1101/184499 — physiology — Posted on 2017-09-05

1327 Local temporal variability reflects functional network integration in the human brain: On the crucial role of the thalamus

Garrett, D.; Epp, S.; Lindenberger, U.

10.1101/184739 — neuroscience — Posted on 2017-09-05

1328 Knockdown of Hypocretin/Orexin Attenuates Extended-Access Cocaine Self-Administration in Rats

Schmeichel, B. E.; Matzeu, A.; Koebel, P.; Vendruscolo, L.; Kieffer, B.; Koob, G.; Martin-Fardon, R.; Contet, C.

10.1101/184911 — neuroscience — Posted on 2017-09-05

1329 The SIN3A histone deacetylase complex is required for a complete transcriptional response to hypoxia

Tiana Cerrolaza, M.; Acosta-Iborra, B.; Puente-Santamaria, L.; Hernansanz, P.; Worsley-Hunt, R.; Masson, N.; Garcia-Rio, F.; Mole, D. R.; Ratcliffe, P. J.; Wasserman, W. W.; Jimenez Cuenca, B.; del Peso, L.

10.1101/182691 — genomics — Posted on 2017-09-05

1330 A transcriptome-wide association study identifies PALMD as a susceptibility gene for calcific aortic valve stenosis

Theriault, S.; Gaudreault, N.; Lamontagne, M.; Messika-Zeitoun, D.; Clavel, M.-A.; Capoulade, R.; Dagenais, F.; Pibarot, P.; Mathieu, P.; Bosse, Y.

10.1101/184945 — genomics — Posted on 2017-09-05

1331 Snord116-dependent diurnal rhythm of DNA methylation in mouse cortex

Coulson, R.; Yasui, D.; Dunaway, K.; Laufer, B.; Vogel-Ciernia, A.; Mordaunt, C.; Totah, T.; LaSalle, J.

10.1101/184788 — genomics — Posted on 2017-09-05

1332 Exploring population responses to environmental change when there’s never enough data; a factor analytic approach

Hindle, B. J.; Rees, M.; Sheppard, A. W.; Quintana-Ascencio, P. F.; Menges, E. S.; Childs, D. Z.

10.1101/184036 — ecology — Posted on 2017-09-05

1333 From lake to estuary, the tale of two waters. A study of aquatic continuum biogeochemistry

Julian, P.; Milbrandt, E.; Osborne, T. Z.

10.1101/184101 — ecology — Posted on 2017-09-05

1334 Disrupting different Distal-less exons leads to ectopic and missing eyespots accurately modeled by reaction-diffusion mechanisms

Connahs, H.; Tlili, S.; van Creij, J.; Loo, T. Y. J.; Banerjee, T.; Saunders, T. E.; Monteiro, A.

10.1101/183491 — developmental biology — Posted on 2017-09-05

1335 Sox4 drives intestinal secretory differentiation toward tuft and enteroendocrine fates

Gracz, A.; Fordham, M. J.; Trotier, D. C.; Zwarycz, B.; Lo, Y.-H.; Bao, K.; Starmer, J.; Shroyer, N. F.; Reinhardt, R. L.; Magness, S. T.

10.1101/183400 — cell biology — Posted on 2017-09-05

1336 Taxon sampling unequally affects individual nodes in a phylogenetic tree: consequences for model gene tree construction in SwissTree

Boeckmann, B.; Dylus, D.; Moretti, S.; Altenhoff, A.; Train, C.-M.; Kriventseva, E.; Bougueleret, L.; Xenarios, I.; Privman, E.; Gabaldon, T.; Dessimoz, C.

10.1101/181966 — bioinformatics — Posted on 2017-09-05

1337 Rats and axolotls share a common molecular signature after spinal cord injury enriched in collagen-1

Didangelos, A.; Bartus, K.; Tica, J.; Roschitzki, B.; Bradbury, E.

10.1101/184713 — pathology — Posted on 2017-09-05

1338 IntelliEppi: Intelligent reaction monitoring and holistic data management system for the molecular biology lab

Neuberger, A.; Ahmed, Z.; Dandekar, T.

10.1101/184721 — bioinformatics — Posted on 2017-09-05

1339 A Rescorla-Wagner Drift-Diffusion Model of Conditioning and Timing

Luzardo, A.; Alonso, E.; Mondragon, E.

10.1101/184465 — animal behavior and cognition — Posted on 2017-09-05

1340 A Neuroeconomic Framework for Creative Cognition

Lin, H.; Vartanian, O.

10.1101/184754 — neuroscience — Posted on 2017-09-05

1341 The reality of "food porn": Larger brain responses to food-related cues than to erotic images predict cue-induced eating.

Versace, F.; Frank, D. W.; Stevens, E. M.; Deweese, M. M.; Guindani, M.; Schembre, S. M.

10.1101/184838 — neuroscience — Posted on 2017-09-05

1342 Within and across-trial dynamics of human EEG reveal cooperative interplay between reinforcement learning and working memory

Collins, A.; Frank, M.

10.1101/184812 — neuroscience — Posted on 2017-09-05

1343 Using DNase Hi-C techniques to map global and local three-dimensional genome architecture at high resolution

Ma, W.; Ay, F.; Lee, C.; Gulsoy, G.; Deng, X.; Cook, S.; Hesson, J.; Cavanaugh, C.; Ware, C. B.; Krumm, A.; Shendure, J.; Blau, C. A.; Disteche, C. M.; Noble, W. S.; Duan, Z.

10.1101/184846 — genomics — Posted on 2017-09-05

1344 Interoperable genome annotation with GBOL, an extendable infrastructure for functional data mining

van Dam, J. C. J.; Koehorst, J. J. J.; Vik, J. O.; Schaap, P. J.; Suarez-Diez, M.

10.1101/184747 — genomics — Posted on 2017-09-05

1345 T cell activation and the HLA locus associate with latent infections of human African trypanosomiasis

Capewell, P.; Bucheton, B.; Clucas, C.; Ilboudo, H.; Cooper, A.; Gorman, T.-A.; O'Neill, K.; Patakas, A.; Platt, A.; Vaikkinen, H.; Weir, W.; Camara, M.; Garside, P.; Jamonneau, V.; MacLeod, A.

10.1101/184762 — genetics — Posted on 2017-09-05

1346 GWAS Meta-Analysis of Neuroticism (N=449,484) Identifies Novel Genetic Loci and Pathways

Nagel, M.; Jansen, P. R.; Stringer, S.; Watanabe, K.; de Leeuw, C. A.; Bryois, J.; Savage, J. E.; Hammerschlag, A. R.; Skene, N.; Munoz-Manchado, A. B.; 23andMe Research Team, ; Linnasrsson, S.; Hjerling-Leffler, J.; White, T.; Tiemeier, H.; Polderman, T. J.; Sullivan, P. F.; van der Sluis, S.; Posthuma, D.

10.1101/184820 — genetics — Posted on 2017-09-05

1347 Biochemical characterization and essentiality of Plasmodium fumarate hydratase

Jayaraman, V.; Suryavanshi, A.; Kalale, P.; Kunala, J.; Balaram, H.

10.1101/158956 — biochemistry — Posted on 2017-09-05

1348 Recurrence-Based Information Processing in Gene Regulatory Networks

Gabalda-Sagarra, M.; Carey, L.; Garcia-Ojalvo, J.

10.1101/010124 — synthetic biology — Posted on 2017-09-05

1349 A topographic visual pathway into the central brain of Drosophila

Timaeus, L.; Geid, L.; Hummel, T.

10.1101/183707 — neuroscience — Posted on 2017-09-05

1350 Methods For Estimation Of Model Accuracy In CASP12

Elofsson, A.; Joo, K.; Keasar, C.; Lee, J.; Maghrabi, A. H. A.; Manavalan, B.; McGuffin, L.; Menendez Hurtado, D.; Mirabello, C.; Pilstal, R.; Sidi, T.; Uziela, K.; Wallner, B.

10.1101/143925 — bioinformatics — Posted on 2017-09-05

1351 Deeper sequencing at unexpected CRISPR/Cas9 off-target sites in vivo : A response to Editas, Intellia, Beacon, ToolGen and others

Schaefer, K. A.; Wu, W.-H.; Darbro, B. W.; Colgan, D. F.; Tsang, S. H.; Bassuk, A. G.; Mahajan, V. B.

10.1101/154450 — bioengineering — Posted on 2017-09-05

1352 Biological influence of extracts of cryopreserved fragments of piglets’ heart and skin

Rohoza, L. A.; Bespalova, I. G.; Chizh, M. O.; Halchenko, S. Y.; Sandomirsky, B. P.

10.1101/184622 — pathology — Posted on 2017-09-05

1353 Audiovisual detection at different intensities and delays

Chandrasekaran, C.; Gondan, M.

10.1101/173773 — neuroscience — Posted on 2017-09-05

1354 Oscillations synchronize amygdala-to-prefrontal primate circuits during aversive learning

Taub, A. H.; Paz, R.

10.1101/184531 — neuroscience — Posted on 2017-09-05

1355 The Moran coalescent in a discrete one-dimensional spatial model

Shpak, M.; Lu, J.; Townsend, J. P.

10.1101/184705 — genetics — Posted on 2017-09-05

1356 Parsimonious identification of evolutionary shifts for quantitative characters

Chabrol, O.; Didier, G.

10.1101/184663 — evolutionary biology — Posted on 2017-09-05

1357 LRSDAY: Long-read sequencing data analysis for yeasts

Yue, J.-X.; Liti, G.

10.1101/184572 — bioinformatics — Posted on 2017-09-05

1358 iSeg: an efficient algorithm for segmentation of genomic and epigenomic data

Girimurugan, S. B.; Liu, Y.; Lung, P.-Y.; Vera, D.; Dennis, J.; Bass, H.; Zhang, J.

10.1101/184515 — bioinformatics — Posted on 2017-09-05

1359 Nutrient stoichiometry shapes microbial coevolution

Larsen, M. L.; Wilhelm, S. W.; Lennon, J. T.

10.1101/183657 — microbiology — Posted on 2017-09-05

1360 Shaping Epigenetic Memory via Genomic Bookmarking

Michieletto, D.; Chiang, M.; Coli, D.; Papantonis, A.; Orlandini, E.; Cook, P. R.; Marenduzzo, D.

10.1101/184598 — biophysics — Posted on 2017-09-05

1361 rxncon 2.0: a language for executable molecular systems biology

Romers, J. C.; Krantz, M.

10.1101/107136 — systems biology — Posted on 2017-09-05

1362 Autogenous Cross-Regulation Of Quaking mRNA Processing And Translation Balances Quaking Functions In Splicing And Translation

Fagg, W. S.; Liu, N.; Fair, J. H.; Shiue, L.; Katzmann, S.; Donohue, J.-P.; Ares, M.

10.1101/127936 — molecular biology — Posted on 2017-09-05

1363 Draft genome of the Eutardigrade Milnesium tardigradum sheds light on ecdysozoan evolution

Bemm, F. M.; Burleigh, L.; Foerster, F.; Schmucki, R.; Ebeling, M.; Janzen, C.; Dandekar, T.; Schill, R.; Certa, U.; Schultz, J.

10.1101/122309 — evolutionary biology — Posted on 2017-09-05

1364 A global envelope test to detect early and late bursts of trait evolution

Murrell, D. J.

10.1101/175968 — evolutionary biology — Posted on 2017-09-05

1365 SeroBA: rapid high-throughput serotyping of Streptococcus pneumoniae from whole genome sequence data

Epping, L.; van Tonder, A. J.; Gladstone, R. A.; The Global Pneumococcal Sequencing Consortium, ; Bentley, S. D.; Page, A. J.; Keane, J. A.

10.1101/179465 — bioinformatics — Posted on 2017-09-05

1366 Unsupervised learning of DNA sequence features using a convolutional restricted Boltzmann machine

Kopp, W.; Schulte-Sasse, R.

10.1101/183095 — bioinformatics — Posted on 2017-09-05

1367 Synthetic negative feedback circuits using engineered small RNAs

Kelly, C. L.; Harris, A. W. K.; Steel, H.; Hancock, E. J.; Heap, J. T.; Papachristodoulou, A.

10.1101/184473 — synthetic biology — Posted on 2017-09-05

1368 Glutamine metabolism regulates Th2 cell differentiation via the α-ketoglutarate-dependent demethylation of histone H3K27

Kuwahara, M.; Izumoto, M.; Honda, H.; Inoue, K.; Imai, Y.; Suzuki, J.; Maruyama, S.; Yasukawa, M.; Yamashita, M.

10.1101/184648 — immunology — Posted on 2017-09-05

1369 Protective effect of estrogen against intervertebral disc degeneration is attenuated by miR-221 through targeting estrogen receptor

Sheng, B.; Yuan, Y.; Liu, X.; Zhang, Y.; Liu, H.; Shen, X.; Liu, B.; Chang, L.

10.1101/184523 — cell biology — Posted on 2017-09-05

1370 The shape of the contact-density function matters when modelling parasite transmission in fluctuating populations

Borremans, B.; Reijniers, J.; Hens, N.; Leirs, H.

10.1101/101535 — epidemiology — Posted on 2017-09-04

1371 Substrate binding and specificity appear as major forces in the functional diversification of eqolisins.

Revuelta, M. V.; Stocchi, N.; Lanza Castronuovo, P. A.; Vera, M.; ten Have, A.

10.1101/167544 — bioinformatics — Posted on 2017-09-04

1372 Disease-Associated Mutations In Human BICD2 Hyperactivate Motility Of Dynein-Dynactin

Huynh, W.; Vale, R.

10.1101/121400 — biochemistry — Posted on 2017-09-04

1373 Patterns of gene body methylation predict coral fitness in new environments

Dixon, G. B.; Bay, L. K.; Matz, M. V.

10.1101/184457 — ecology — Posted on 2017-09-04

1374 Largely unlinked gene sets targeted by selection for domestication syndrome phenotypes in maize and sorghum

Lai, X.; Yan, L.; Lu, Y.; Schnable, J.

10.1101/184424 — plant biology — Posted on 2017-09-04

1375 Systemic evidence of acute seizure-associated neuronal injury in patients with temporal lobe epilepsy

Kunda, S.; LaFrance-Corey, R. G.; Khadjevand, F.; Worrell, G. A.; Howe, C. L.

10.1101/184366 — neuroscience — Posted on 2017-09-04

1376 An open-source cryo-storage solution

Ultee, E.; Schenkel, F.; Yang, W.; Brenzinger, S.; Depelteau, J. S.; Briegel, A.

10.1101/184168 — molecular biology — Posted on 2017-09-04

1377 The INO80 Chromatin Remodeler Sustains Metabolic Stability by Promoting TOR Signaling and Regulating Histone Acetylation

Beckwith, S. L.; Schwartz, E. K.; Garcia-Nieto, P. E.; King, D. A.; Gowans, G. J.; Wong, K. M.; Yao, W.; Eckley, T. L.; Paraschuk, A. P.; Peltan, E.; Lee, L. L.; Morrison, A.

10.1101/184440 — genetics — Posted on 2017-09-04

1378 Mechanistic causes of constrained phenotypic variation revealed by synthetic gene regulatory networks

Schaerli, Y.; Jimenez, A.; Duarte, J. M.; Mihajlovic, L.; Renggli, J.; Isalan, M.; Sharpe, J.; Wagner, A.

10.1101/184325 — systems biology — Posted on 2017-09-04

1379 Ldb1 and Rnf12-dependent regulation of Lhx2 controls the relative balance between neurogenesis and gliogenesis in retina.

de Melo, J.; Venkataraman, A.; Zibetti, C.; Clark, B. S.; Blackshaw, S.

10.1101/183285 — neuroscience — Posted on 2017-09-04

1380 Reversal of molecular pathology by RNA-targeting Cas9 in a myotonic dystrophy mouse model

Batra, R.; Nelles, D. A.; Krach, F.; Thomas, J. D.; Snjader, L.; Blue, S. M.; Aigner, S.; Swanson, M. S.; Yeo, G. W.

10.1101/184408 — molecular biology — Posted on 2017-09-04

1381 A "molecular guillotine" reveals an interphase function of Kinesin-5

Lv, Z.; Rosenbaum, J.; Aspelmeier, T.; Grosshans, J.

10.1101/184416 — developmental biology — Posted on 2017-09-04

1382 Dendritic processing of spontaneous neuronal sequences for one-shot learning

Haga, T.; Fukai, T.

10.1101/165613 — neuroscience — Posted on 2017-09-04

1383 Sugar metabolism of the first thermophilic planctomycete Thermogutta terrifontis: comparative genomic and transcriptomic approaches

Elcheninov, A.; Menzel, P.; Gudbergsdottir, S.; Slesarev, A.; Kadnikov, V.; Krogh, A.; Bonch-Osmolovskaya, E.; Peng, X.; Kublanov, I.

10.1101/179903 — microbiology — Posted on 2017-09-04

1384 Copy-number signatures and mutational processes in ovarian carcinoma

Macintyre, G.; Goranova, T.; De Silva, D.; Ennis, D.; Piskorz, A. M.; Eldridge, M.; Sie, D.; Lewsley, L.-A.; Hanif, A.; Wilson, C.; Dowson, S.; Glasspool, R. M.; Lockley, M.; Brockbank, E.; Montes, A.; Walther, A.; Sundar, S.; Edmondson, R.; Hall, G. D.; Clamp, A.; Gourley, C.; Hall, M.; Fotopoulou, C.; Gabra, H.; Paul, J.; Supernat, A.; Millan, D.; Hoyle, A.; Bryson, G.; Nourse, C.; Mincarelli, L.; Navarro Sanchez, L.; Ylstra, B.; Jimenez-Linan, M.; Moore, L.; Hofmann, O.; Markowetz, F.; McNeish, I. A.; Brenton, J. D.

10.1101/174201 — cancer biology — Posted on 2017-09-04

1385 Both Lipopolysaccharide And Lipoteichoic Acids Potently Induce Anomalous Fibrin Amyloid Formation: Assessment With Novel Amytracker™ Stains

Pretorius, E.; Page, M. J.; Hendricks, L.; Nkosi, N. B.; Benson, S. R.; Kell, D. B.

10.1101/143867 — biophysics — Posted on 2017-09-04

1386 Tissue specific auxin biosynthesis regulates leaf vein patterning

Kneuper, I.; Teale, W. D.; Dawson, J. E.; Tsuggeki, R.; Palme, K.; Katifori, E.; Ditengou, F. A.

10.1101/184275 — plant biology — Posted on 2017-09-04

1387 Transformation From Independent To Integrative Coding Of Multi-Object Arrangements In Human Visual Cortex

Kaiser, D.; Peelen, M. V.

10.1101/117432 — neuroscience — Posted on 2017-09-04

1388 Downstream promoter interactions of TFIID TAFs facilitate transcription reinitiation

Joo, Y. J.; Ficarro, S. B.; Soares, L. M.; Chun, Y.; Marto, J. A.; Buratowski, S.

10.1101/184317 — molecular biology — Posted on 2017-09-04

1389 High-throughput annotation of full-length long noncoding RNAs with Capture Long-Read Sequencing (CLS)

Lagarde, J.; Uszczynska-Ratajczak, B.; Carbonell, S.; Perez-Lluch, S.; Abad, A.; Davis, C.; Gingeras, T. R.; Frankish, A.; Harrow, J.; Guigo, R.; Johnson, R.

10.1101/105064 — genomics — Posted on 2017-09-04

1390 Specialized plant biochemistry drives gene clustering in fungi

Gluck-Thaler, E.; Slot, J.

10.1101/184242 — genomics — Posted on 2017-09-04

1391 Colonization History Of The Western Corn Rootworm (Diabrotica virgifera virgifera) In North America: Insights From Random Forest ABC Using Microsatellite Data

Lombaert, E.; Ciosi, M.; Miller, N. J.; Sappington, T. W.; Blin, A.; Guillemaud, T.

10.1101/117424 — evolutionary biology — Posted on 2017-09-04

1392 Does floral herbivory reduce pollination-mediated fitness in shelter rewarding Royal Irises?

Ghara, M.; Ewerhardy, C.; Yardeni, G.; Matzliach, M.; Sapir, Y.

10.1101/184382 — ecology — Posted on 2017-09-04

1393 G-quadruplex secondary structure from circular dichroism spectroscopy

del Villar-Guerra, R.; Trent, J. O.; Chaires, J.

10.1101/184390 — biophysics — Posted on 2017-09-04

1394 Powerful Inference with the D-statistic on Low-Coverage Whole-Genome Data

Soraggi, S.; Wiuf, C.; Albrechtsen, A.

10.1101/127852 — bioinformatics — Posted on 2017-09-04

1395 On statistical modeling of sequencing noise in high depth data to assess tumor evolution

Rabadan, R.; Bhanot, G.; Marsilio, S.; Chiorazzi, N.; Pasqualucci, L.; Khiabanian, H.

10.1101/128587 — bioinformatics — Posted on 2017-09-04

1396 Learning mutational graphs of individual tumor evolution from multi-sample sequencing data

Ramazzotti, D.; Graudenzi, A.; De Sano, L.; Antoniotti, M.; Caravagna, G.

10.1101/132183 — bioinformatics — Posted on 2017-09-04

1397 EnsembleNet: ensemble gene function predictions for Arabidopsis thaliana

Oest Hansen, B.; Meyer, E. H.; Ferrari, C.; Vaid, N.; Movahedi, S.; Vandepoele, K.; Nikoloski, Z.; Mutwil, M.

10.1101/181396 — bioinformatics — Posted on 2017-09-04

1398 Local context influences memory for emotional stimuli but not electrophysiological markers of emotion-dependent attention

Barnacle, G. E.; Tsivilis, D.; Schaefer, A.; Talmi, D.

10.1101/184309 — neuroscience — Posted on 2017-09-04

1399 A common representation of time across visual andauditory modalities

Barne, L. C.; Sato, J. R.; Camargo, R. Y.; Claessens, P. M. E.; Caetano, M. S.; Cravo, A. M.

10.1101/183426 — neuroscience — Posted on 2017-09-04

1400 The Perceptual Shaping of Anticipatory Actions

Maffei, G.; Herreros, I.; Sanchez-Fibla, M.; Friston, K. J.; Verschure, P. F. M. J.

10.1101/184333 — neuroscience — Posted on 2017-09-04

1401 Variational Bayesian parameter estimation techniques for the general linear model

Starke, L.; Ostwald, D.

10.1101/077461 — neuroscience — Posted on 2017-09-04

1402 The theoretical molecular weight of NaYF4:RE upconversion nanoparticles

MacKenzie, L. E.; Goode, J. A.; Vakurov, A.; Nampi, P. P.; Saha, S.; Jose, G.; Millner, P. A.

10.1101/114744 — biophysics — Posted on 2017-09-04

1403 CINNA: An R package for deciphering Central Informative Nodes in Network Analysis

Ashtiani, M.; Mirzaie, M.; Jafari, M.

10.1101/168757 — systems biology — Posted on 2017-09-04

1404 ARIGAN: Synthetic Arabidopsis Plants using Generative Adversarial Network

Giuffrida, M. V.; Scharr, H.; Tsaftaris, S. A.

10.1101/184259 — plant biology — Posted on 2017-09-04

1405 Characterization of antioxidant properties and metabolite profile of Agave atrovirens extracts

Olvera-Garcia, V.; Granado-Serrano, A. B.; Jove, M.; Cassanye, A.; Cardador-Martinez, A.; Portero-Otin, M.; Serrano, J.

10.1101/184226 — pharmacology and toxicology — Posted on 2017-09-04

1406 Dissemination of Cryptococcus neoformans via localised proliferation and blockage of blood vessels

Gibson, J.; Evans, R.; Bojarczuk, A.; Hotham, R.; Lagendijk, A.; Hogan, B.; Ingham, P.; Renshaw, S.; Johnston, S.

10.1101/184200 — microbiology — Posted on 2017-09-04

1407 Codon usage bias in animals: disentangling the effects of natural selection, effective population size and GC-biased gene conversion

Galtier, N.; Roux, C.; Rousselle, M.; Romiguier, J.; Figuet, E.; Glemin, S.; Bierne, N.; Duret, L.

10.1101/184283 — evolutionary biology — Posted on 2017-09-04

1408 Draft genome of the Heterotardigrade Milnesium tardigradum sheds light on ecdysozoan evolution

Bemm, F. M.; Burleigh, L.; Foerster, F.; Schmucki, R.; Ebeling, M.; Janzen, C.; Dandekar, T.; Schill, R.; Certa, U.; Schultz, J.

10.1101/122309 — evolutionary biology — Posted on 2017-09-04

1409 Cardiac enriched BAF chromatin remodeling complex subunit Baf60c regulates gene expression programs essential for heart development and function

Sun, X.; Hota, S.; Zhou, Y.-Q.; Novak, S.; Miguel-Perez, D.; Christodoulou, D.; Seidman, C.; Seidman, J.; Gregorio, C.; Henkelman, M.; Rossant, J.; Bruneau, B.

10.1101/184143 — developmental biology — Posted on 2017-09-04

1410 Sporosarcina pasteurii can form nanoscale crystals on cell surface

Bhaduri, S.; Ghosh, T.; Montemagno, C.; Kumar, A.

10.1101/184184 — biophysics — Posted on 2017-09-04

1411 Improving Min Hash via the Containment Index with applications to Metagenomic Analysis

Koslicki, D.; Zabeti, H.

10.1101/184150 — bioinformatics — Posted on 2017-09-04

1412 MERIT: a Mutation Error Rate Identification Toolkit for Ultra-deep Sequencing Applications

Hadigol, M.; Khiabanian, H.

10.1101/184291 — bioinformatics — Posted on 2017-09-04

1413 Ahr and Cyp1a2 genotypes both affect susceptibility to motor deficits following gestational and lactational exposure to polychlorinated biphenyls

Colter, B. T.; Garber, H. F.; Fleming, S. M.; Fowler, J. P.; Harding, G. D.; Hooven, M. K.; Howes, A. A.; Infante, S. K.; Lang, A. L.; MacDougall, M. C.; Stegman, M.; Taylor, K.; Curran, C. P.

10.1101/184010 — pharmacology and toxicology — Posted on 2017-09-04

1414 Neurophysiological signatures of duration and rhythm prediction across sensory modalities

Chang, A. Y.-C.; Seth, A. K.; Roseboom, W.

10.1101/183954 — neuroscience — Posted on 2017-09-04

1415 Low-intensity focused ultrasound alters the latency and spatial patterns of sensory-evoked cortical responses in vivo.

Fisher, J. A. N.; Gumenchuk, I.

10.1101/183905 — neuroscience — Posted on 2017-09-04

1416 What the structural-functional connectome reveals about brain aging: The key role of the fronto-striatal-thalamic circuit and the rejuvenating impact of physical activity

Bonifazi, P.; Erramuzpe, A.; Diez, I.; Gabilondo, I.; Boisgontier, M.; Pauwels, L.; Stramaglia, S.; Swinnen, S.; Cortes, J.

10.1101/183939 — neuroscience — Posted on 2017-09-04

1417 The genome of Trichoplusia ni, an agricultural pest and novel model for small RNA biology

Fu, Y.; Yang, Y.; Zhang, H.; Farley, G.; Wang, J.; Quarles, K. A.; Weng, Z.; Zamore, P. D.

10.1101/183921 — genomics — Posted on 2017-09-04

1418 Project Dhaka: Variational Autoencoder for Unmasking Tumor Heterogeneity from Single Cell Genomic Data

Rashid, S.; Shah, S.; Pandya, R.

10.1101/183863 — genomics — Posted on 2017-09-04

1419 Catch-slip behavior observed upon rupturing membrane-cytoskeleton bonds

Rajasekharan, V.; Sreenivasan, V. K. A.; Pereira, F. A.; Farrell, B.

10.1101/184069 — biophysics — Posted on 2017-09-04

1420 ASaiM: a Galaxy-based framework to analyze raw shotgun data from microbiota

Batut, B.; Gravouil, K.; Defois, C.; Hiltemann, S.; Brugere, J.-F.; Peyretaillade, E.; Peyret, P.

10.1101/183970 — bioinformatics — Posted on 2017-09-04

1421 Optimizing scoring function of dynamic programming of pairwise profile alignment using derivative free neural network

Yamada, K. D.

10.1101/182493 — bioinformatics — Posted on 2017-09-04

1422 Insights into the relation between noise and biological complexity

Pucci, F.; Rooman, M.

10.1101/184077 — systems biology — Posted on 2017-09-04

1423 Unbiased Strain-Typing of Arbovirus Directly from Mosquitoes Using Nanopore Sequencing: A Field-forward Biosurveillance Protocol

Russell, J. A.; Campos, B.; Stone, J.; Blosser, E. M.; Burkett-Cadena, N.; Jacobs, J. L.

10.1101/183780 — genomics — Posted on 2017-09-04

1424 Bioimpedance and new onset heart failure: A longitudinal study of ~500,000 individuals from the general population

Lindholm, D.; Fukaya, E.; Leeper, N. J.; Ingelsson, E.

10.1101/183483 — epidemiology — Posted on 2017-09-04

1425 Assessment of the impact of shared data on the scientific literature

Milham, M.; Craddock, C.; Fleischmann, M.; Son, J.; Clucas, J.; Xu, H.; Koo, B.; Krishnakumar, A.; Biswal, B.; Castellanos, F.; Colcombe, S.; Di Martino, A.; Zuo, X.-N.; Klein, A.

10.1101/183814 — bioinformatics — Posted on 2017-09-04

1426 A predictive model of rats’ calorie intake as a function of diet energy density

Beheshti, R.; Treesukosol, Y.; Igusa, T.; Moran, T. H.

10.1101/184085 — bioinformatics — Posted on 2017-09-04

1427 Evaluating Antioxidant Capacity of Different Propolis Samples from Konya, Turkey and Their Inhibitory Effect on Head and Neck Cancer Cells

Ciftci-Yilmaz, S.; Azman, Z. N.; Kosem, K.; Gunduz, E.; Grenman, R. G.

10.1101/183913 — pharmacology and toxicology — Posted on 2017-09-04

1428 Pan-cancer study of heterogeneous RNA aberrations

Fonseca, N. A.; Kahles, A.; Lehmann, K.-V.; Calabrese, C.; Chateigner, A.; Davidson, N. R.; Demircioglu, D.; He, Y.; Lamaze, F. C.; Li, S.; Liu, D.; Liu, F.; Perry, M. D.; Su, H.; Xiang, L.; Zhang, J.; Amin, S. B.; Bailey, P.; Craft, B.; Frenkel-Morgenstern, M.; Goldman, M.; Greger, L.; Hoadley, K. A.; Hou, Y.; Khurana, E.; Korbel, J. O.; Li, C.; Li, X.; Li, X.; Liu, X.; Lu, Y.; Marin, M. G.; Meyerson, M.; Nandi, T.; Nielsen, M. M.; Ojesina, A. I.; Ouellette, B. F. F.; Pan-Hammarström, Q.; Pedamallu, C. S.; Pedersen, J. S.; Shiraishi, Y.; Siebert, R.; Soulette, C. M.; Stark, S. G.; Tan

10.1101/183889 — genomics — Posted on 2017-09-03

1429 Genetic architectures of larval pigmentation and color pattern in the redheaded pine sawfly (Neodiprion lecontei)

Linnen, C.; O'Quin, C. T.; Shackleford, T.; Sears, C. R.; Lindstedt, C.

10.1101/183996 — genetics — Posted on 2017-09-03

1430 Comparison of two ancient DNA extraction protocols for skeletal remains from tropical environments

Nieves-Colon, M. A.; Ozga, A. T.; Pestle, W. J.; Cucina, A.; Tiesler, V.; Stanton, T. W.; Stone, A. C.

10.1101/184119 — genetics — Posted on 2017-09-03

1431 Melanism patches up the defective cuticular morphological traits through promoting the up-regulation of cuticular protein-coding genes in Bombyx mori

Qiao, L.; Wang, R.-x.; Hao, Y.-j.; Hu, H.; Xiong, G.; He, S.-z.; Song, J.-b.; Lu, K.-p.; Mallet, J.; Xin, Y.-q.; Chen, B.; Dai, F.-y.

10.1101/155002 — genetics — Posted on 2017-09-03

1432 Stochastic microbial community assembly decreases biogeochemical function

Graham, E. B.; Stegen, J. C.

10.1101/183897 — ecology — Posted on 2017-09-03

1433 Temporal epigenomic profiling identifies AHR as dynamic super-enhancer controlled regulator of mesenchymal multipotency

Gerard, D.; Schmidt, F.; Ginolhac, A.; Schmitz, M.; Halder, R.; Ebert, P.; Schulz, M. H.; Sauter, T.; Sinkkonen, L.

10.1101/183988 — bioinformatics — Posted on 2017-09-03

1434 GIGYF2 mediates post-transcriptional mRNA repression through recruitment of the CCR4/NOT complex

Amaya Ramirez, C. C.; Hubbe, P.; Mandel, N.; Bethune, J.

10.1101/181776 — biochemistry — Posted on 2017-09-03

1435 Melanism patches up the defective cuticular morphological traits through promoting the up-regulation of cuticular protein-coding genes in Bombyx mori

Qiao, L.; Wang, R.-x.; Hao, Y.-j.; Hu, H.; Xiong, G.; He, S.-z.; Song, J.-b.; Lu, K.-p.; Mallet, J.; Xin, Y.-q.; Chen, B.; Dai, F.-y.

10.1101/155002 — genetics — Posted on 2017-09-03

1436 Meta-Analysis Of Sequence-Based Association Studies Across Three Cattle Breeds Reveals 25 QTL For Fat And Protein Percentages In Milk At Nucleotide Resolution

Pausch, H.; Emmerling, R.; Gredler-Grandl, B.; Fries, R.; Daetwyler, H. D.; Goddard, M. E.

10.1101/143404 — genomics — Posted on 2017-09-03

1437 A Negative Feedback Regulates The Flow Of Signal Through Akt/mTORC1/S6K1 Pathway

Dutta, P.; Devaraj, V.; Bose, B.

10.1101/147710 — systems biology — Posted on 2017-09-03

1438 Role of duplicate genes in determining the tissue-selectivity of hereditary diseases

Barshir, R.; Hekselman, I.; Shemesh, N.; Sharon, M.; Novack, L.; Yeger-Lotem, E.

10.1101/171090 — systems biology — Posted on 2017-09-03

1439 Modulation of Body Mass Composition using Vestibular Nerve Stimulation

McGeoch, P. D.; McKeown, J.; Peterson, H.; Ramachandran, V. S.

10.1101/087692 — neuroscience — Posted on 2017-09-03

1440 Propagation of Beta/Gamma Rhythms in the Cortico-Basal Ganglia Circuits of the Parkinsonian Rat

West, T. O.; Berthouze, L.; Farmer, S. F.; Halliday, D.; Litvak, V.; Magill, P. J.; Sharott, A.

10.1101/180455 — neuroscience — Posted on 2017-09-03

1441 Grow with the flow: a latitudinal cline in physiology is associated with more variable precipitation in Erythranthe cardinalis

Muir, C. D.; Angert, A. L.

10.1101/080952 — evolutionary biology — Posted on 2017-09-03

1442 Scale-free versus multi-scale: Statistical analysis of livestock mobility patterns across species

Sakamoto, T.; Sanders, L.; Inazumi, N.

10.1101/055905 — animal behavior and cognition — Posted on 2017-09-03

1443 Neither pulled nor pushed: Genetic drift and front wandering uncover a new class of reaction-diffusion waves

Birzu, G.; Hallatschek, O.; Korolev, K. S.

10.1101/183806 — ecology — Posted on 2017-09-03

1444 Temporally-Feathered Intensity Modulated Radiation Therapy: A technique to reduce normal tissue toxicity

Alfonso, J. C. L.; Parsai, S.; Joshi, N.; Godley, A.; Koyfman, S. A.; Caudell, J. J.; Fuller, C. D.; Enderling, H.; Scott, J.

10.1101/184044 — biophysics — Posted on 2017-09-03

1445 Medical relevance of protein-truncating variants across 337,208 individuals in the UK Biobank study

DeBoever, C.; Tanigawa, Y.; McInnes, G.; Lavertu, A.; Chang, C.; Bustamante, C. D.; Daly, M. J.; Rivas, M. A.

10.1101/179762 — genetics — Posted on 2017-09-02

1446 Fast whole brain imaging in adult Drosophila during response to stimuli and behavior

Aimon, S.; Katsuki, T.; Grosenick, L.; Broxton, M.; Deisseroth, K.; Sejnowski, T. J.; Greenspan, R. J.

10.1101/033803 — neuroscience — Posted on 2017-09-02

1447 A topographic visual pathway into the central brain of Drosophila

Timaeus, L.; Geid, L.; Hummel, T.

10.1101/183707 — neuroscience — Posted on 2017-09-02

1448 What exactly is ‘N’ in cell culture and animal experiments?

Lazic, S. E.; Clarke-Williams, C. J.; Munafo, M. R.

10.1101/183962 — neuroscience — Posted on 2017-09-02

1449 Caffeic Acid Phenethyl Ester (CAPE) Inhibits Growth of Chromosomally instable bub1Δ mutant in Saccharomyces cerevisiae

Azman, Z. N.; Kiyici, A.; Oncel, M.; Yilmaz, H. R.; Gunduz, E.; Gunduz, M.; Basrai, M. A.; Ciftci-Yilmaz, S.

10.1101/179994 — genetics — Posted on 2017-09-02

1450 Learning sequence patterns of AGO-sRNA affinity from high-throughput sequencing libraries to improve in silico functional small RNA detection and classification in plants

Morgado, L.; Jansen, R. C.; Johannes, F.

10.1101/173575 — bioinformatics — Posted on 2017-09-02

1451 Modulation of Body Mass Composition using Vestibular Nerve Stimulation

McGeoch, P. D.; McKeown, J.; Peterson, H.; Ramachandran, V. S.

10.1101/087692 — neuroscience — Posted on 2017-09-02

1452 Comprehensive Pathway Analyses Of Schizophrenia Risk Loci Point To Dysfunctional Postsynaptic Signaling

Schijven, D.; Kofink, D.; Tragante, V.; Verkerke, M.; Pulit, S. L.; Kahn, R. S.; Veldink, J. H.; Vinkers, C. H.; Boks, M. P.; Luykx, J. J.

10.1101/117481 — genetics — Posted on 2017-09-02

1453 Lacking conservation genomics in the giant Galapagos tortoise

Loire, E.; Galtier, N.

10.1101/101980 — evolutionary biology — Posted on 2017-09-02

1454 MOSAIC: a chemical-genetic interaction data repository and web resource for exploring chemical modes of action

Nelson, J.; Simpkins, S. W.; Safizadeh, H.; Li, S.; Piotrowski, J.; Hirano, H.; Yashiroda, Y.; Osada, H.; Yoshida, M.; Boone, C.; Myers, C. L.

10.1101/112854 — bioinformatics — Posted on 2017-09-02

1455 HIV-1 initiates genomic RNA packaging in a unique subset of host RNA granules

Lingappa, J. R.; Tanaka, M.; Barajas, B. C.; Robinson, B. A.; Phuong, D. J.; Chutiraka, K.; Reed, J. C.

10.1101/183855 — microbiology — Posted on 2017-09-02

1456 Numb prevents a complete EMT by modulating Notch signalling

Bocci, F.; Jolly, M. K.; Tripathi, S. C.; Aguilar, M.; Hanash, S.; Levine, H.; Onuchic, J. N.

10.1101/183871 — cancer biology — Posted on 2017-09-02

1457 Early And Late Components Of EEG Delay Activity Correlate Differently With Scene Working Memory Performance

Ellmore, T. M.; Ng, K.; Reichert, C. P.

10.1101/143461 — neuroscience — Posted on 2017-09-01

1458 Mating can cause transgenerational gene silencing in Caenorhabditis elegans

Devanapally, S.; Allgood, S.; Jose, A. M.

10.1101/148700 — genetics — Posted on 2017-09-01

1459 The Past Sure Is Tense: On Interpreting Phylogenetic Divergence Time Estimates

Brown, J. W.; Smith, S. A.

10.1101/113720 — evolutionary biology — Posted on 2017-09-01

1460 Nonparametric Bayesian inference of transcriptional branching and recombination identifies regulators of early human germ cell development

Penfold, C. A.; Sybirna, A.; Reid, J.; Huang, Y.; Wernisch, L.; Ghahramani, Z.; Grant, M.; Surani, M. A.

10.1101/167684 — developmental biology — Posted on 2017-09-01

1461 Simulating heterogeneous populations using Boolean models

Ross, B. C.; Boguslav, M.; Weeks, H.; Costello, J.

10.1101/110817 — systems biology — Posted on 2017-09-01

1462 An automated confocal micro-extensometer enables in vivo quantification of mechanical properties with cellular resolution.

Robinson, S.; Huflejt, M.; Barbier de Reuille, P.; Braybrook, S. A.; Schorderet, M.; Reinhardt, D.; Kuhlemeier, C.

10.1101/183533 — plant biology — Posted on 2017-09-01

1463 Raspberry Pi Powered Imaging for Plant Phenotyping

Tovar, J.; Hoyer, J. S.; Lin, A.; Tielking, A.; Callen, S.; Castillo, E.; Miller, M.; Tessman, M.; Fahlgren, N.; Carrington, J.; Nusinow, D.; Gehan, M. A.

10.1101/183822 — plant biology — Posted on 2017-09-01

1464 Low Perfusion Compartments in Glioblastoma Quantified by Advanced Magnetic Resonance Imaging: Correlation with Patient Survival

Li, C.; Yan, J.-L.; Torheim, T.; McLean, M. A.; Boonzaier, N. R.; Huang, Y.; Van Dijken, B. R. J.; Matys, T.; Markowetz, F.; Price, S. J.

10.1101/180521 — neuroscience — Posted on 2017-09-01

1465 Investigation of polymorphisms in the P. falciparum artemisinin resistance marker kelch13 in asymptomatic infections in a rural area of Cameroon

Safeukui, I.; Fru-Cho, J.; Mbengue, A.; Suresh, N.; Njimoh, D. L.; Bumah, V. V.; Nkuo-Akenji, T.; Titanji, V. P. K.; Haldar, K.

10.1101/148999 — microbiology — Posted on 2017-09-01

1466 Genomic sequencing identifies secondary findings in a cohort of parent study participants

Thompson, M. L.; Finnila, C. R.; Bowling, K. M.; Brothers, K. B.; Neu, M.; Amaral, M. D.; Hiatt, S. M.; East, K. M.; Gray, D. E.; Lawlor, J. M. J.; Kelley, W. V.; Lose, E. J.; Rich, C. A.; Simmons, S.; Levy, S. E.; Myers, R. M.; Barsh, G. S.; Bebin, E. M.; Cooper, G. M.

10.1101/183186 — genomics — Posted on 2017-09-01

1467 Human demographic history has amplified the effects of background selection across the genome

Torres, R.; Szpiech, Z. A.; Hernandez, R. D.

10.1101/181859 — evolutionary biology — Posted on 2017-09-01

1468 Chaperone AMPylation modulates aggregation and toxicity of neurodegenerative disease-associated polypeptides

Truttmann, M. C.; Pincus, D.; Ploegh, H. L.

10.1101/183723 — cell biology — Posted on 2017-09-01

1469 Parsing the roles of neck-linker docking and tethered head diffusion in the stepping dynamics of kinesin

Zhang, Z.; Goldzvik, Y.; Thirumalai, D.

10.1101/183590 — biophysics — Posted on 2017-09-01

1470 Evidence of sinks and sources in the PLC activated PIP2 cycle

Suratekar, R.; Raghu, P.; Krishna, S.

10.1101/183509 — biophysics — Posted on 2017-09-01

1471 Ldb1 and Rnf12-dependent regulation of Lhx2 controls the relative balance between neurogenesis and gliogenesis in retina.

de Melo, J.; Venkataraman, A.; Zibetti, C.; Clark, B. S.; Blackshaw, S.

10.1101/183285 — neuroscience — Posted on 2017-09-01

1472 Clustering and compositionality of task representations in a neural network trained to perform many cognitive tasks

Yang, G. R.; Song, H. F.; Newsome, W. T.; Wang, X.-J.

10.1101/183632 — neuroscience — Posted on 2017-09-01

1473 Tracking dynamic threat imminence

Meyer, C. T.; Padmala, S.; Pessoa, L.

10.1101/183798 — neuroscience — Posted on 2017-09-01

1474 Electrophysiological indices reflect switches between Bayesian and heuristic strategies in perceptual learning

Bennett, D.; Sasmita, K.; Murawski, C.; Bode, S.

10.1101/183665 — neuroscience — Posted on 2017-09-01

1475 Nutrient stoichiometry shapes microbial coevolution

Larsen, M. L.; Wilhelm, S. W.; Lennon, J. T.

10.1101/183657 — microbiology — Posted on 2017-09-01

1476 Functional redundancy of variant and canonical histone H3 lysine 9 modification in Drosophila

Penke, T. J. R.; McKay, D. J.; Strahl, B. D.; Matera, A. G.; Duronio, R. J.

10.1101/183251 — genetics — Posted on 2017-09-01

1477 Climate change will lead to pronounced shifts in the diversity of soil microbial communities

Ladau, J.; Shi, Y.; Jing, X.; He, J.-S.; Chen, L.; Lin, X.; Fierer, N.; Gilbert, J. A.; Pollard, K. S.; Chu, H.

10.1101/180174 — ecology — Posted on 2017-09-01

1478 Neurochondrin interacts with the SMN protein suggesting a novel mechanism for Spinal Muscular Atrophy pathology.

Thompson, L.; Morrison, K.; Shirran, S.; Botting, C.; Sleeman, J.

10.1101/183640 — cell biology — Posted on 2017-09-01

1479 Layered structure and complex mechanochemistry of a strong bacterial adhesive

Hernando-Perez, M.; Setayeshgar, S.; Hou, Y.; Temam, R.; Dragnea, B.; Brun, Y. V.; Berne, C.

10.1101/183749 — biophysics — Posted on 2017-09-01

1480 Assessing actimeters for inclusion in the Healthy Brain Network

Clucas, J.; White, C.; Koo, B.; Milham, M.; Klein, A.

10.1101/183772 — bioinformatics — Posted on 2017-09-01

1481 Estimating the scale of biomedical data generation using text mining

Rosenfeld, G.; Lin, D.

10.1101/182857 — bioinformatics — Posted on 2017-09-01

1482 PhysiCell: an Open Source Physics-Based Cell Simulator for 3-D Multicellular Systems

Ghaffarizadeh, A.; Friedman, S. H.; Mumenthaler, S. M.; Macklin, P.

10.1101/088773 — systems biology — Posted on 2017-09-01

1483 Assortment of flowering time and defense alleles in natural Arabidopsis thaliana populations suggests co-evolution between defense and vegetative lifespan strategies

Glander, S.; He, F.; Schmitz, G.; Witten, A.; Telschow, A.; de Meaux, J.

10.1101/131136 — evolutionary biology — Posted on 2017-09-01

1484 Comparing Caenorhabditis elegans gentle and harsh touch response behavior using a multiplexed hydraulic microfluidic device

McClanahan, P.; Xu, J.; Fang-Yen, C.

10.1101/162990 — bioengineering — Posted on 2017-09-01

1485 ALUMINUM RESISTANCE TRANSCRIPTION FACTOR 1 (ART1) contributes to natural variation in rice Al resistance.

Arbelaez, J. D.; Maron, L. G.; Jobe, T. O.; Pineros, M. A.; Famoso, A. N.; Rebelo, A. R.; Singh, N.; Ma, Q.; Fei, Z.; Kochian, L. V.; McCouch, S. R.

10.1101/137281 — plant biology — Posted on 2017-09-01

1486 CropQuant: An automated and scalable field phenotyping platform for crop monitoring and trait measurements to facilitate breeding and digital agriculture

Zhou, J.; Reynolds, D.; Websdale, D.; Le Cornu, T.; Gonzalez-Navarro, O.; Lister, C.; Orford, S.; Laycock, S.; Finlayson, G.; Stitt, T.; Clark, M. D.; Bevan, M. W.; Griffiths, S.

10.1101/161547 — plant biology — Posted on 2017-09-01

1487 Neck muscle spindle noise biases reaches in a multi-sensory integration task

Abedi Khoozani, P.; Blohm, G.

10.1101/182907 — neuroscience — Posted on 2017-09-01

1488 Biogeography & Environmental Conditions Shape Phage & Bacteria Interaction Networks Across The Human Microbiome

Hannigan, G. D.; Duhaime, M. B.; Koutra, D.; Schloss, P. D.

10.1101/144642 — microbiology — Posted on 2017-09-01

1489 Viral outbreaks involve destabilized evolutionary networks: evidence from Ebola, Influenza and Zika

Aris-Brosou, S.; Ibeh, N.; Noël, J.

10.1101/070102 — evolutionary biology — Posted on 2017-09-01

1490 Integrative DNA copy number detection and genotyping from sequencing and array-based platforms

Zhou, Z.; Wang, W.; Wang, L.-S.; Zhang, N.

10.1101/172700 — bioinformatics — Posted on 2017-09-01

1491 Integrated transcriptome and epigenome analyses identify alternative splicing as a novel candidate linking histone modifications to embryonic stem cell fate decision

Xu, Y.; Jin, G.; Liu, L.; Guo, D.; Zhou, X.

10.1101/181875 — bioinformatics — Posted on 2017-09-01

1492 Interpretable dimensionality reduction of single cell transcriptome data with deep generative models

Ding, J.; Condon, A. E.; Shah, S. P.

10.1101/178624 — bioinformatics — Posted on 2017-09-01

1493 Transformation of the head-direction signal into a spatial code

Peyrache, A.; Schieferstein, N.; Buzsaki, G.

10.1101/075986 — neuroscience — Posted on 2017-09-01

1494 Cell size control driven by the circadian clock and environment in cyanobacteria

Martins, B. M. C.; Tooke, A. K.; Thomas, P.; Locke, J. C. W.

10.1101/183558 — systems biology — Posted on 2017-09-01

1495 Local signals in mouse horizontal cell dendrites

Chapot, C. A.; Behrens, C.; Rogerson, L. E.; Baden, T.; Pop, S.; Berens, P.; Euler, T.; Schubert, T.

10.1101/143909 — neuroscience — Posted on 2017-09-01

1496 Entorhinal cortex receptive fields are modulated by spatial attention, even without movement.

Wilming, N.; König, P.; König, S.; Buffalo, E. A.

10.1101/183327 — neuroscience — Posted on 2017-09-01

1497 Integrating genomic resources for a threatened Caribbean coral (Orbicella faveolata) using a genetic linkage map developed from individual larval genotypes

Snelling, J.; Dziedzic, K.; Guermond, S.; Meyer, E.

10.1101/183467 — genomics — Posted on 2017-09-01

1498 A histone acetylome-wide association study of Alzheimer’s disease: neuropathology-associated regulatory variation in the human entorhinal cortex

Marzi, S.; Ribarska, T.; Smith, A. R.; Hannon, E.; Poschmann, J.; Moore, K.; Troakes, C.; Al-Sarraj, S.; Beck, S.; Newman, S.; Lunnon, K.; Schalkwyk, L.; Mill, J.

10.1101/183541 — genomics — Posted on 2017-09-01

1499 Electronic Health Record and Genome-wide Genetic Data in Generation Scotland Participants

Kerr, S. M.; Campbell, A.; Marten, J.; Vitart, V.; McIntosh, A. M.; Porteous, D. J.; Hayward, C.

10.1101/154609 — genomics — Posted on 2017-09-01

1500 CardioClassifier: demonstrating the power of disease- and gene-specific computational decision support for clinical genome interpretation

Whiffin, N.; Walsh, R.; Govind, R.; Edwards, M.; Ahmad, M.; Zhang, X.; Tayal, U.; Buchan, R.; Midwinter, W.; Wilk, A.; Najgebauer, H.; Francis, C.; Wilkinson, S.; Monk, T.; Brett, L.; O'Regan, D.; Prasad, S. K.; Morris-Rosendahl, D. J.; Barton, P. J. R.; Edwards, E.; Ware, J. S.; Cook, S. A.

10.1101/180109 — genomics — Posted on 2017-09-01

1501 A Deep Learning And Novelty Detection Framework For Rapid Phenotyping In High-Content Screening

Sommer, C.; Hoefler, R.; Samwer, M.; Gerlich, D. W.

10.1101/134627 — cell biology — Posted on 2017-09-01

1502 Sulforaphane modulates microRNA expression in colon cancer cells to implicate the regulation of oncogenes CDC25A, HMGA2 and MYC

Dacosta, C. A.; Paicu, C.; Mohorianu, I.; Wang, W.; Xu, P.; Dalmay, T.; Bao, Y.

10.1101/183475 — cancer biology — Posted on 2017-09-01

1503 Simultaneous Enumeration Of Cancer And Immune Cell Types From Bulk Tumor Gene Expression Data

Racle, J.; de Jonge, K.; Baumgaertner, P.; Speiser, D. E.; Gfeller, D.

10.1101/117788 — cancer biology — Posted on 2017-09-01

1504 Structural covariance of brain region volumes is associated with both structural connectivity and transcriptomic similarity

Yee, Y.; Fernandes, D. J.; French, L.; Ellegood, J.; Cahill, L. S.; Vousden, D. A.; Spencer Noakes, L.; Scholz, J.; van Eede, M. C.; Nieman, B. J.; Sled, J. G.; Lerch, J. P.