bioRxiv directory

Gliessman, J. R.; Kremer, T. A.; Sangani, A. A.; Jones-Burrage, S. E.; McKinlay, J. B.

10.1101/144709 — microbiology — Posted on 2017-05-31

3 Copy number variants implicate cardiac function and development pathways in earthquake-induced stress cardiomyopathy

Lacey, C.; Doudney, K.; Bridgman, P.; George, P. M.; Mulder, R. T.; Zarifeh, J. J.; Kimber, B.; Cadzow, M. J.; Black, M. A.; Merriman, T.; Lehnert, K.; Bickley, V. M.; Pearson, J. F.; Cameron, V. A.; Kennedy, M. A.

10.1101/144675 — genetics — Posted on 2017-05-31

4 Drosophila mutants that are motile but respond poorly to all stimuli tested

Vang, L. L.; Adler, J.

10.1101/045062 — genetics — Posted on 2017-05-31

5 Breastfeeding And Risk Of Asthma, Hay Fever And Eczema

Ek, W.; Karlsson, T.; Azuaje Hernandez, C.; Rask-Andersen, M.; Johansson, A.

10.1101/144352 — epidemiology — Posted on 2017-05-31

6 Associations Of Prenatal And Postnatal Growth With Insulin-Like Growth Factor-I Levels In Pre-Adolescence

Arathimos, R.; Macdonald-Wallis, C.; Bull, C. J.; Holly, J. M. P.; Oken, E.; Kramer, M. S.; Gusina, N.; Bogdanovich, N.; Vilchuck, K.; Patel, R.; Martin, R. M.; Tilling, K.

10.1101/144493 — epidemiology — Posted on 2017-05-31

7 Metabolic Effects Of Risk Alleles In PNPLA3, TM6SF2, GCKR, And LYPLAL1 Inform About Heterogeneity Of Non-Alcoholic Fatty Liver Disease

Sliz, E.; Sebert, S.; Wurtz, P.; Kangas, A.; Soininen, P.; Lehtimaki, T.; Kahonen, M.; Viikari, J.; Mannikko, M.; Ala-Korpela, M.; Raitakari, O.; Kettunen, J.

10.1101/143511 — epidemiology — Posted on 2017-05-31

8 A Standard Operating Procedure For Outlier Removal In Large-Sample Epidemiological Transcriptomics Datasets

Bovelstad, H. M.; Holsbo, E.; Bongo, L. A.; Lund, E.

10.1101/144519 — epidemiology — Posted on 2017-05-31

9 The underestimated importance of acute infections by human papillomaviruses

Alizon, S.; Murall, C. L.; Bravo, I. G.

10.1101/144576 — epidemiology — Posted on 2017-05-31

10 Prior Knowledge And Sampling Model Informed Learning With Single Cell RNA-Seq Data

Mukherjee, S.; Zhang, Y.; Kannan, S.; Seelig, G.

10.1101/142398 — bioinformatics — Posted on 2017-05-31

11 SUPPA2 provides fast, accurate, and uncertainty-aware differential splicing analysis across multiple conditions

Trincado, J. L.; Entizne, J. C.; Hysenaj, G.; Singh, B.; Skalic, M.; Elliott, D. J.; Eyras, E.

10.1101/086876 — bioinformatics — Posted on 2017-05-31

12 Protein Profiling In Cancer Cell Lines And Tumor Tissue Using Reverse Phase Protein Arrays

Jing, X.; Wang, W.; Gauthier, N. P.; Kaushik, P.; Root, A.; Stein, R. R.; Korkut, A.; Sander, C.

10.1101/144535 — systems biology — Posted on 2017-05-31

13 The Reproducibility Of Research And The Misinterpretation Of P Values

Colquhoun, D.

10.1101/144337 — scientific communication and education — Posted on 2017-05-31

14 Rhythmic Activity In The Medial Frontal Cortex Encodes Relative Reward Value

Amarante, L. M.; Caetano, M. A.; Laubach, M.

10.1101/144550 — neuroscience — Posted on 2017-05-31

15 Learning And Transfer Of Working Memory Gating Policies

Bhandari, A.; Badre, D.

10.1101/144543 — neuroscience — Posted on 2017-05-31

16 Morphological And Transcriptomic Evidence For Ammonium Induction Of Sexual Reproduction In Thalassiosira pseudonana And Other Centric Diatoms

Moore, E. R.; Bullington, B. S.; Weisberg, A. J.; Jiang, Y.; Chang, J.; Halsey, K.

10.1101/144667 — microbiology — Posted on 2017-05-31

17 The Rate Of Evolution Of Postmating-Prezygotic Reproductive Isolation In Drosophila

Turissini, D. A.; McGirr, J. A.; Patel, S. S.; David, J. R.; Matute, D. R.

10.1101/142059 — evolutionary biology — Posted on 2017-05-31

18 SCENIC: Single-Cell Regulatory Network Inference And Clustering

Aibar, S.; Bravo Gonzalez-Blas, C.; Moerman, T.; Wouters, J.; Huynh-Thu, V. A.; Imrichova, H.; Kalender Atak, Z.; Hulselmans, G.; Dewaele, M.; Rambow, F.; Geurts, P.; Aerts, J.; Marine, J.-C.; van den Oord, J.; Aerts, S.

10.1101/144501 — bioinformatics — Posted on 2017-05-31

19 Precise Timing Of Sensory Modulations Coupled To Eye Movements During Active Vision

Devia, C.; Montefusco-Siegmund, R.; Egana, J. I.; Maldonado, P. E.

10.1101/144477 — neuroscience — Posted on 2017-05-31

20 Theta Phase Synchronization Between The Human Hippocampus And The Prefrontal Cortex Supports Learning Of Unexpected Information

Gruber, M. J.; Hsieh, L.-T.; Staresina, B.; Elger, C.; Fell, J.; Axmacher, N.; Ranganath, C.

10.1101/144634 — neuroscience — Posted on 2017-05-31

21 Task-Dependent Representations Of Stimulus And Choice In Mouse Parietal Cortex

Pho, G.; Goard, M.; Woodson, J.; Crawford, B.; Sur, M.

10.1101/144592 — neuroscience — Posted on 2017-05-31

22 Biogeography & Environmental Conditions Shape Phage & Bacteria Interaction Networks Across The Human Microbiome

Hannigan, G. D.; Duhaime, M. B.; Koutra, D.; Schloss, P. D.

10.1101/144642 — microbiology — Posted on 2017-05-31

23 Genome-Enabled Insights Into The Ecophysiology Of The Comammox Bacterium Candidatus Nitrospira nitrosa

Camejo, P. Y.; Santo Domingo, J.; McMahon, K. D.; Noguera, D. R.

10.1101/144600 — microbiology — Posted on 2017-05-31

24 Heart-Specific Activin Signaling Promotes Cardiomyopathy And Organismal Aging Through Autophagy Inhibition

Chang, K.; Kang, P.; Liu, Y.; Huang, K.; Taylor, E.; Bodmer, R.; Ocorr, K.; Bai, H.

10.1101/139360 — genetics — Posted on 2017-05-31

25 Plasticity Of Plant Defense And Its Evolutionary Implications In Wild Populations Of Boechera stricta

Wagner, M.; Mitchell-Olds, T.

10.1101/144626 — evolutionary biology — Posted on 2017-05-31

26 Bacterial Colonization Stimulates A Complex Physiological Response In The Immature Human Intestinal Epithelium

Hill, D. R.; Huang, S.; Fields, C.; Mukherjee, D.; Bons, B.; Thodla, S.; Dedhia, P. H.; Chin, A. M.; Tsai, Y.-H.; Nagy, M. S.; Schmidt, T.; Walk, S.; Young, V. B.; Spence, J. R.

10.1101/144568 — developmental biology — Posted on 2017-05-31

27 Compositional Canonical Correlation Analysis

Graffelman, J.; Pawlowsky-Glahn, V.; Egozcue, J. J.; Buccianti, A.

10.1101/144584 — bioinformatics — Posted on 2017-05-31

28 Refining The Accuracy Of Validated Target Identification Through Coding Variant Fine-Mapping In Type 2 Diabetes

Mahajan, A.; Wessel, J.; Willems, S.; Zhao, W.; Robertson, N. R.; Chu, A. Y.; Gan, W.; Kitajima, H.; Scott, R. A.; Barroso, I.; Frayling, T. M.; Goodarzi, M. O.; Meigs, J. B.; Boehnke, M.; Saleheen, D.; Morris, A. P.; Rotter, J. I.; McCarthy, M. I.

10.1101/144410 — genetics — Posted on 2017-05-31

29 Molecular evidence for the early evolution of photosynthetic water oxidation

Cardona, T.; Sanchez-Baracaldo, P.; Rutherford, A. W.; Larkum, A.

10.1101/109447 — evolutionary biology — Posted on 2017-05-31

30 Sepsis Increases Perioperative Metastases In A Murine Model

Tai, L.-H.; Ananth, A. A.; Seth, R.; Alkayyal, A.; Zhang, J.; de Souza, C. T.; Staibano, P.; Kennedy, M. A.; Auer, R. C.

10.1101/142083 — cancer biology — Posted on 2017-05-31

31 The neural representation of personally familiar and unfamiliar faces in the distributed system for face perception

Visconti di Oleggio Castello, M.; Halchenko, Y. O.; Guntupalli, J. S.; Gors, J. D.; Gobbini, M. I.

10.1101/138297 — neuroscience — Posted on 2017-05-31

32 Refining The Accuracy Of Validated Target Identification Through Coding Variant Fine-Mapping In Type 2 Diabetes

Mahajan, A.; Morris, A. P.; Rotter, J. I.; McCarthy, M. I.

10.1101/144410 — genetics — Posted on 2017-05-31

33 Improving Leukemic CD34+/CD38- Blasts Characterization With Single-Cell Transcriptome Sequencing

Sartori, A.; Cheng, P.; Falconnet, E.; Ribaux, P.; Aubry-Lachainaye, J.-P.; Levesque, M. P.; Antonarakis, S. E.; Matthes, T.; Borel, C.

10.1101/141754 — cancer biology — Posted on 2017-05-31

34 Reproductive Isolation through Experimental Manipulation of Sexually Antagonistic Coevolution in Drosophila Melanogaster

Syed, Z. A.; Chatterjee, M.; Samant, M. A.; Prasad, N. G.

10.1101/079657 — evolutionary biology — Posted on 2017-05-31

35 Human PRDM9 Can Bind And Activate Promoters, And Other Zinc-Finger Proteins Associate With Reduced Recombination In cis

Altemose, N.; Noor, N.; Bitoun, E.; Tumian, A.; Imbeault, M.; Chapman, J. R.; Aricescu, A. R.; Myers, S. R.

10.1101/144295 — genetics — Posted on 2017-05-31

36 Recipient-Biased Competition For A Cross-Fed Nutrient Is Required For Coexistence Of Microbial Mutualists

McCully, A. L.; LaSarre, B.; McKinlay, J. B.

10.1101/144220 — microbiology — Posted on 2017-05-31

37 Partitioning Phenotypic Variance Due To Parent-Of-Origin Effects Using Genomic Relatedness Matrices

Laurin, C. A.; Cuellar-Partida, G.; Hemani, G.; Davey Smith, G.; Yang, J.; Evans, D. M.

10.1101/133827 — genetics — Posted on 2017-05-31

38 The Cell Polarity Proteins Boi1p And Boi2p Stimulate Vesicle Fusion At The Plasma Membrane Of Yeast Cells

Kustermann, J.; Wu, Y.; Rieger, L.; Dedden, D.; Phan, T.; Walther, P.; Duenkler, A.; Johnsson, N.

10.1101/144360 — cell biology — Posted on 2017-05-31

39 Systems Biology Analysis Using A Genome-Scale Metabolic Model Shows That Phosphine Triggers Global Metabolic Suppression In A Resistant Strain Of C. elegans

Ma, L.; Chan, A. H. C.; Hattwell, J. P. N.; Ebert, P. R.; Schirra, H. J.

10.1101/144386 — systems biology — Posted on 2017-05-31

40 BioSharing: Harnessing Metadata Standards For The Data Commons

Sansone, S.-A.; Gonzalez-Beltran, A.; Rocca-Serra, P.; McQuilton, P.; Izzo, M.; Lister, A.; Thurston, M.

10.1101/144147 — scientific communication and education — Posted on 2017-05-31

41 Coupling Of Tactile LFP Signals Between Mouse Cortex And Olfactory Bulb

Parabucki, A.; Lampl, I.

10.1101/144279 — neuroscience — Posted on 2017-05-31

42 Stochastic Simulation Of Dopamine Neuromodulation For Implementation Of Fluorescent Neurochemical Probes In The Striatal Extracellular Space

Beyene, A.; McFarlane, I. R.; Pinals, R.; Landry, M.

10.1101/144436 — neuroscience — Posted on 2017-05-31

43 Moderate Nucleotide Diversity In The Atlantic Herring Is Associated With A Low Mutation Rate

Feng, C.; Pettersson, M.; Lamichhaney, S.; Rubin, C.-J.; Rafati, N.; Casini, M.; Folkvord, A.; Andersson, L.

10.1101/144303 — genomics — Posted on 2017-05-31

44 A Model-Free Approach For Detecting Genomic Regions Of Deep Divergence Using The Distribution Of Haplotype Distances

Pettersson, M.; Kierczak, M.; Sallman Almen, M.; Lamichhaney, S.; Andersson, L.

10.1101/144394 — genomics — Posted on 2017-05-31

45 Whole Genome Sequences Of Malawi Cichlids Reveal Multiple Radiations Interconnected By Gene Flow

Malinsky, M.; Svardal, H.; Tyers, A. M.; Miska, E. A.; Genner, M. J.; Turner, G. F.; Durbin, R.

10.1101/143859 — evolutionary biology — Posted on 2017-05-31

46 Strategies For Partitioning Clock Models In Phylogenomic Dating: Application To The Angiosperm Evolutionary Timescale

Foster, C. S. P.; Ho, S. Y. W.

10.1101/144287 — evolutionary biology — Posted on 2017-05-31

47 Foresight Is Required To Enforce Sustainability Under Time-Delayed Biodiversity Loss

Lafuite, A.-S.; de Mazancourt, C.; Loreau, M.

10.1101/144444 — ecology — Posted on 2017-05-31

48 Deconvolution Of Subcellular Protrusion Heterogeneity And The Underlying Actin Regulator Dynamics From Live Cell Imaging

Wang, C.; Choi, H. J.; Kim, S.-J.; Bae, Y.; Lee, K.

10.1101/144238 — cell biology — Posted on 2017-05-31

49 On The Use Of The Experimentally Determined Enzyme Inhibition Constant As A Measure Of Absolute Binding Affinity

Darras, F. H.; Pang, Y.-P.

10.1101/144204 — biophysics — Posted on 2017-05-31

50 Monitoring large populations of locus coeruleus neurons reveals the non-global nature of the norepinephrine neuromodulatory system

Totah, N. K.; Neves, R. M.; Panzeri, S.; Logothetis, N. K.; Eschenko, O.

10.1101/109710 — neuroscience — Posted on 2017-05-31

51 Clusternomics: Integrative Context-Dependent Clustering For Heterogeneous Datasets

Gabasova, E.; Reid, J. E.; Wernisch, L.

10.1101/139071 — genomics — Posted on 2017-05-31

52 Powerful Inference with the D-statistic on Low-Coverage Whole-Genome Data

Soraggi, S.; Wiuf, C.; Albrechtsen, A.

10.1101/127852 — bioinformatics — Posted on 2017-05-31

53 Cooperative Contributions of Structural and Functional Connectivity to Successful Memory and Aging

Davis, S. W.; Szymanski, A.; Boms, H.; Fink, T.; Cabeza, R.

10.1101/144154 — neuroscience — Posted on 2017-05-30

54 Characterization Of Vif Domains That Mediate Feline Immunodeficiency Virus Antagonism Of APOBEC3-H And APOBEC3-CH Restriction

Sims, O. L.; Maynard, E.; Poeschla, E. M.

10.1101/144113 — immunology — Posted on 2017-05-30

55 R2s for Correlated Data: Phylogenetic Models, LMMs, and GLMMs

Ives, A.

10.1101/144170 — evolutionary biology — Posted on 2017-05-30

56 Evolutionary Dynamics Of Incubation Periods

Ottino-Loffler, B.; Scott, J. G.; Strogatz, S. H.

10.1101/144139 — evolutionary biology — Posted on 2017-05-30

57 Functional Asymmetry In The Central Brain Regions In Boys With Attention Deficit Hyperactivity Disorder Detected By Event Related Potentials During Performance Of The Attentional Network Test

Abramov, D. M.; Mourao, C. A.; Cunha, C. Q.; Pontes, M. C.; Galhanone, P. R.; deAzevedo, L. C.; Lazarev, V. V.

10.1101/118380 — neuroscience — Posted on 2017-05-30

58 Efficiency Of Genomic Prediction Of Non-Assessed Single Crosses

Viana, J. M. S.; Pereira, H. D.; Mundim, G. B.; Piepho, H.-P.; Silva, F. F.

10.1101/141440 — genetics — Posted on 2017-05-30

59 The Genomic History Of Southeastern Europe

Mathieson, I.; Alpaslan Roodenberg, S.; Posth, C.; Szecsenyi-Nagy, A.; Rohland, N.; Mallick, S.; Olalde, I.; Broomandkhoshbacht, N.; Cheronet, O.; Fernandes, D.; Ferry, M.; Gamarra, B.; Gonzalez Fortes, G.; Haak, W.; Harney, E.; Krause-Kyora, B.; Kucukkalipci, I.; Michel, M.; Mittnik, A.; Nagele, K.; Novak, M.; Oppenheimer, J.; Patterson, N.; Pfrengle, S.; Sirak, K.; Stewardson, K.; Vai, S.; Alexandrov, S.; Alt, K. W.; Andreescu, R.; Antonović, D.; Ash, A.; Atanassova, N.; Bacvarov, K.; Balazs Gusztav, M.; Bocherens, H.; Bolus, M.; Boroneanţ, A.; Boyadzhiev, Y.; Budnik, A.; Burma

10.1101/135616 — genetics — Posted on 2017-05-30

60 Dynein Pulling Forces On Ruptured Nuclei Counteract Lamin-Mediated Nuclear Envelope Repair Mechanisms In Vivo

Penfield, L.; Wysolmerski, B.; Farhadifar, R.; Martinez, M.; Biggs, R.; Wu, H.-Y.; Mauro, M.; Broberg, C.; Needleman, D.; Bahmanyar, S.

10.1101/138693 — cell biology — Posted on 2017-05-30

61 Fast and Robust Inference of Phylogenetic Ornstein-Uhlenbeck Models Using Parallel Likelihood Calculation

Mitov, V.; Stadler, T.

10.1101/115089 — evolutionary biology — Posted on 2017-05-30

62 The Influence Of Study Characteristics On Coordinate-Based fMRI Meta-Analyses

Bossier, H.; Seurinck, R.; Kuhn, S.; Banaschewski, T.; Barker, G. J.; Bokde, A. L. W.; Martinot, J.-L.; Lemaitre, H.; Paus, T.; Millenet, S.; Moerkerke, B.; The IMAGEN Consortium,

10.1101/144071 — neuroscience — Posted on 2017-05-30

63 Time-Course Analysis Of Early Meiotic Prophase Events Informs Mechanisms Of Homolog Pairing And Synapsis In Caenorhabditis elegans

Mlynarczyk-Evans, S.; Villeneuve, A. M.

10.1101/143693 — genetics — Posted on 2017-05-30

64 Evaluating Strategies For Reversing CRISPR-Cas9 Gene Drives

Vella, M.; Gunning, C.; Lloyd, A.; Gould, F.

10.1101/144097 — evolutionary biology — Posted on 2017-05-30

65 The Human Cytoplasmic Dynein Interactome Reveals Novel Activators Of Motility

Redwine, W. B.; DeSantis, M. E.; Hollyer, I.; Htet, Z. M.; Tran, P. T.; Swanson, S. K.; Florens, L.; Washburn, M. P.; Reck-Peterson, S. L.

10.1101/143743 — cell biology — Posted on 2017-05-30

66 Sex chromosome evolution, heterochiasmy and physiological QTL in the salmonid Brook Charr Salvelinus fontinalis

Sutherland, B. J. G.; Rico, C.; Audet, C.; Bernatchez, L.

10.1101/105411 — genomics — Posted on 2017-05-30

67 Fetal death certificate data quality: A tale of two US counties

Christiansen-Lindquist, L.; Silver, R. M.; Parker, C. B.; Dudley, D. J.; Koch, M. A.; Reddy, U. M.; Saade, G. R.; Goldenberg, R. L.; Hogue, C. J. R.

10.1101/136432 — epidemiology — Posted on 2017-05-30

68 Directly Estimating Epidemic Curves From Genomic Data

Vaughan, T. G.; Leventhal, G. E.; Rasmussen, D. A.; Drummond, A. J.; Welch, D.; Stadler, T.

10.1101/142570 — epidemiology — Posted on 2017-05-30

69 Advancing A Science For Sustaining Health: Establishing A Model Health District in Madagascar

Bonds, M.; Garchitorena, A.; Cordier, L.; Miller, A. C.; McCarty, M.; Andriamihaja, B.; Ratsirarson, J.; Randrianambinina, A.; Rabeza, V. R.; Finnegan, K.; Gillespie, T.; Wright, P. C.; Farmer, P. E.; Loyd, T.; Murray, M. B.; Herrnstein, R. M.; Herrnstein, J.; PIVOT Impact Team, ; Gikic, D.; Ouenzar, M. A.; Hall, L.; Rich, M. L.

10.1101/141549 — epidemiology — Posted on 2017-05-30

70 Age-specific prevalence of anti-Pgp3 antibodies and severe conjunctival scarring in the Solomon Islands

Butcher, R.; Sokana, O.; Jack, K.; Martin, D.; Burton, M. J.; Solomon, A.; Mabey, D.; Roberts, C. h.

10.1101/141135 — epidemiology — Posted on 2017-05-30

71 Cyclin G And The Polycomb Repressive Complexes PRC1 And PR-DUB Cooperate For Developmental Stability

Dardalhon-Cumenal, D.; Deraze, J.; Dupont, C. A.; Ribeiro, V.; Coleno-Costes, A.; Pouch, J.; Le Crom, S.; Thomassin-Bourrel, H.; Debat, V.; Randsholt, N. B.; Peronnet, F.

10.1101/144048 — developmental biology — Posted on 2017-05-30

72 Adaptive vs continuous cancer therapy: Exploiting space and trade-offs in drug scheduling

Gallaher, J. A.; Enriquez-Navas, P. M.; Luddy, K. A.; Gatenby, R. A.; Anderson, A. R. A.

10.1101/128959 — cancer biology — Posted on 2017-05-30

73 The Kinetic Basis Of CRISPR-Cas Off-Targeting Rules

Klein, M.; Eslami-Mossallam, B.; Gonzalez Arroyo, D.; Depken, M.

10.1101/143602 — biophysics — Posted on 2017-05-30

74 Conserved Neural Circuit Structure Across Drosophila Larva Development Revealed By Comparative Connectomics

Gerhard, S.; Andrade, I.; Fetter, R. D.; Cardona, A.; Schneider-Mizell, C. M.

10.1101/143727 — neuroscience — Posted on 2017-05-30

75 Monocyte-Lymphocyte Cross-Communication Via Soluble CD163 Directly Links Innate Immune System Activation And Adaptive Immune System Suppression Following Ischemic Stroke

O'Connell, G. C.; Tennant, C. S.; Lucke-Wold, N.; Kabbani, Y.; Tarabishy, A. R.; Chantler, P. D.; Barr, T. L.

10.1101/144063 — neuroscience — Posted on 2017-05-30

76 Dynamic flexibility in striatal-cortical circuits supports reinforcement learning

Gerraty, R. T.; Davidow, J. Y.; Foerde, K.; Galvan, A.; Bassett, D. S.; Shohamy, D.

10.1101/094383 — neuroscience — Posted on 2017-05-30

77 Dorsal hippocampus plays a causal role in model-based planning

Miller, K. J.; Botvinick, M. M.; Brody, C. D.

10.1101/096594 — neuroscience — Posted on 2017-05-30

78 Complete Transcriptome Profiling Of Normal And Age-Related Macular Degeneration Eye Tissues Reveals Changes In Regulation Of Non-Coding RNA And Extreme Disregulation Of Anti-Sense Transcription

Kim, E. J.; Grant, G. R.; Bowman, A. S.; Haider, N.; Gudiseva, H. V.; Chavali, V. R. M.

10.1101/143917 — genomics — Posted on 2017-05-30

79 Contrasting Patterns Of Evolutionary Constraint And Novelty Revealed By Comparative Sperm Proteomic Analysis

Whittington, E.; Forsythe, D.; Karr, T. L.; Walters, J.; Dorus, S.

10.1101/144089 — genomics — Posted on 2017-05-30

80 FGF4 Retrogene On CFA12 Is Responsible For Chondrodystrophy And Intervertebral Disc Disease In Dogs

Brown, E. A.; Dickinson, P. J.; Mansour, T.; Sturges, B. K.; Aguilar, M.; Young, A. E.; Korff, C.; Lind, J.; Ettinger, C. L.; Varon, S.; Pollard, R.; Brown, C. T.; Raudsepp, T.; Bannasch, D. L.

10.1101/144022 — genetics — Posted on 2017-05-30

81 Protein Evolution Depends On Multiple Distinct Population Size Parameters

Platt, A.; Weber, C. C.; Liberles, D. A.

10.1101/141499 — evolutionary biology — Posted on 2017-05-30

82 Skeletal Cell YAP And TAZ Redundantly Promote Bone Development By Regulation Of Collagen I Expression And Organization

Kegelman, C. D.; Mason, D. E.; Dawahare, J. H.; Vigil, G. D.; Howard, S. S.; Bellido, T. M.; Robling, A. G.; Boerckel, J.

10.1101/143982 — developmental biology — Posted on 2017-05-30

83 Lamellar Junctions In The Endolymphatic Sac Act As A Relief Valve To Regulate Inner Ear Pressure

Swinburne, I. A.; Mosaliganti, K. R.; Upadhyayula, S.; Liu, T.-L.; Hildebrand, D. G. C.; Tsai, T.; Chen, A.; Al-Obeidi, E.; Fass, A.; Malhotra, S.; Engert, F.; Lichtman, J. W.; Kirchhausen, T.; Betzig, E.; Megason, S. G.

10.1101/143826 — developmental biology — Posted on 2017-05-30

84 PI3K Activation In Neural Stem Cells Drives Tumorigenesis Which Can Be Suppressed By Targeting CREB

Daniel, P.; Filiz, G.; Brown, D.; Christie, M.; Waring, P.; Zhang, Y.; Haynes, J.; Pouton, C.; Flanagan, D.; Vincan, E.; Johns, T.; Montgomery, K.; Phillips, W.; Mantamadiotis, T.

10.1101/143388 — cancer biology — Posted on 2017-05-30

85 High-throughput, image-based screening of genetic variant libraries

Emanuel, G.; Moffitt, J. R.; Zhuang, X.

10.1101/143966 — systems biology — Posted on 2017-05-30

86 Lipid transfer from plants to arbuscular mycorrhiza fungi

Keymer, A.; Pimprikar, P.; Wewer, V.; Huber, C.; Brands, M.; Bucerius, S.; Delaux, P.-M.; Klingl, V.; von Roepenack-Lahaye, E.; Wang, T. L.; Eisenreich, W.; Doermann, P.; Parniske, M.; Gutjahr, C.

10.1101/143883 — plant biology — Posted on 2017-05-30

87 ALUMINUM RESISTANCE TRANSCRIPTION FACTOR 1 (ART1) underlies a major Al resistance QTL and interacts with natural variation in the genetic background to quantitatively regulate Al resistance in rice.

Arbelaez, J. D.; Maron, L. G.; Jobe, T. O.; Pineros, M. A.; Famoso, A. N.; Rebelo, A. R.; Singh, N.; Ma, Q.; Fei, Z.; Kochian, L. V.; McCouch, S. R.

10.1101/137281 — plant biology — Posted on 2017-05-30

88 Local Signal Processing In Mouse Horizontal Cell Dendrites

Chapot, C. A.; Rogerson, L. E.; Baden, T.; Pop, S.; Berens, P.; Euler, T.; Schubert, T.

10.1101/143909 — neuroscience — Posted on 2017-05-30

89 Global Gene Repression By Dicer-Independent tRNA Fragments

Kuscu, C.; Kumar, P.; Kiran, M.; Su, Z.; Malik, A.; Dutta, A.

10.1101/143974 — molecular biology — Posted on 2017-05-30

90 Methods For Estimation Of Model Accuracy In CASP12

Elofsson, A.; Joo, K.; Keasar, C.; Lee, J.; Maghrabi, A. H. A.; Manavalan, B.; McGuffin, L.; Menendez Hurtado, D.; Mirabello, C.; Pilstal, R.; Sidi, T.; Uziela, K.; Wallner, B.

10.1101/143925 — bioinformatics — Posted on 2017-05-30

91 Precentral Gyrus Abnormal Connectivity In Male And Female Schizophrenia Patients

Zarei, M.

10.1101/143768 — neuroscience — Posted on 2017-05-30

92 De novo transcriptome sequencing and comparative analysis of midgut tissues of four non-model insects pertaining to Hemiptera, Coleoptera, Diptera and Lepidoptera

Gazara, R. K.; Cardoso, C.; Bellieny-Rabelo, D.; Ferreira, C.; Terra, W. R.; Venancio, T. M.

10.1101/127381 — genomics — Posted on 2017-05-30

93 Meiotic Crossover Patterning In The Absence Of ATR: Loss Of Interference And Assurance But Not The Centromere Effect

Brady, M. M.; McMahan, S.; Sekelsky, J.

10.1101/143651 — genetics — Posted on 2017-05-30

94 Precentral Gyrus Abnormal Connectivity In Male And Female Schizophrenia Patients

Zarei, M.

10.1101/143768 — neuroscience — Posted on 2017-05-30

95 Phage mobility is a core determinant of phage-bacteria coexistence in biofilms

Simmons, M.; Drescher, K.; Nadell, C.; Bucci, V.

10.1101/086462 — microbiology — Posted on 2017-05-30

96 Variance in Estimated Pairwise Genetic DistanceUnder High versus Low Coverage Sequencing: theContribution of Linkage Disequilibrium

Shpak, M.; Ni, Y.; Lu, J.; Mueller, P.

10.1101/108928 — genetics — Posted on 2017-05-30

97 To Beard, Or Not To Beard: Linking Sexual Selection On Masculinity, Embryonic Neural Crest Cells, And Human Self-Domestication

Gleeson, B. T.

10.1101/143875 — evolutionary biology — Posted on 2017-05-30

98 On the importance of credibility: Bayesian and likelihood phylogenetic reconstructions of morphological traits are concordant. A comment on Puttick et al.

Brown, J. W.; Parins-Fukuchi, C.; Stull, G. W.; Vargas, O. M.; Smith, S. A.

10.1101/114793 — evolutionary biology — Posted on 2017-05-30

99 Untargeted Metabolomics Suffers From Incomplete Data Analysis

Baran, R.

10.1101/143818 — systems biology — Posted on 2017-05-30

100 Functional Preference For Object Sounds But Not For Voices In The Occipito-Temporal Cortex Of Early Blind Individuals

Dormal, G.; Pelland, M.; Rezk, M.; Yakobov, E.; Lepore, F.; Collignon, O.

10.1101/143776 — neuroscience — Posted on 2017-05-30

101 Prediction (Or Not) During Language Processing. A Commentary On Nieuwland et al. (2017) And Delong et al. (2005)

Yan, S.; Kuperberg, G. R.; Jaeger, T. F.

10.1101/143750 — neuroscience — Posted on 2017-05-30

102 Different Brain Networks Underlying Intelligence In Autism Spectrum Disorders And Typically Developing Children

Pua, E. P. K.; Malpas, C.; Bowden, S.; Seal, M.

10.1101/143891 — neuroscience — Posted on 2017-05-30

103 Genome-Wide Comparison Of Toxigenic And Non-Toxigenic Corynebacterium diphtheriae Isolates Identifies Differences In The Pan Genomes Between Respiratory And Cutaneous Strains

Timms, V. J.; Nguyen, T.; Crighton, T.; Yuen, M.; Sintchenko, V.

10.1101/143800 — microbiology — Posted on 2017-05-30

104 Phylogenomic Species Delimitation In Microendemic Frogs Of The Brazilian Atlantic Forest

Pie, M. R.; Bornschein, M. R.; Ribeiro, L. F.; Faircloth, B. C.; McCormack, J. E.

10.1101/143735 — evolutionary biology — Posted on 2017-05-30

105 High-Throughput Laboratory Evolution Of Escherichia coli Under Multiple Stress Environments

Horinouchi, T.; Suzuki, S.; Kotani, H.; Tanabe, K.; Sakata, N.; Shimizu, H.; Furusawa, C.

10.1101/143792 — evolutionary biology — Posted on 2017-05-30

106 Tragedy Of The Commons In The Chemostat

Schuster, M.; Foxall, E.; Finch, D.; Smith, H.; De Leenheer, P.

10.1101/140400 — evolutionary biology — Posted on 2017-05-30

107 Anticipating Emerging Arboviruses: What Comes After Zika?

Evans, M. V.; Murdock, C. C.; Drake, J. M.

10.1101/143842 — ecology — Posted on 2017-05-30

108 Lysinibacillus fusiformis M5 induces increased complexity in Bacillus subtilis 168 colony biofilms via hypoxanthine

Gallegos Monterrosa, R.; Kankel, S.; Goetze, S.; Barnett, R.; Stallforth, P.; Kovacs, A. T.

10.1101/118125 — microbiology — Posted on 2017-05-30

109 Meta-Analysis Of Sequence-Based Association Studies Across Three Cattle Breeds Reveals 25 QTL For Fat And Protein Percentages In Milk At Nucleotide Resolution

Pausch, H.; Emmerling, R.; Gredler-Grandl, B.; Fries, R.; Daetwyler, H. D.; Goddard, M. E.

10.1101/143404 — genomics — Posted on 2017-05-30

110 Both Lipopolysaccharide And Lipoteichoic Acids Potently Induce Anomalous Fibrin Amyloid Formation: Assessment With Novel Amytracker™ Stains

Pretorius, E.; Page, M. J.; Hendricks, L.; Nkosi, N. B.; Benson, S. R.; Kell, D. B.

10.1101/143867 — biophysics — Posted on 2017-05-30

111 Structure Of Allium Lachrymatory Factor Synthase Elucidates Catalysis On Sulfenic Acid Substrate

Arakawa, T.; Sato, Y.; Takabe, J.; Masamura, N.; Kato, M.; Aoyagi, M.; Kamoi, T.; Tsuge, N.; Imai, S.; Fushinobu, S.

10.1101/142687 — biochemistry — Posted on 2017-05-30

112 Unsupervised Clustering And Epigenetic Classification Of Single Cells

Zamanighomi, M.; Lin, Z.; Daley, T.; Schep, A.; Greenleaf, W. J.; Wong, W. H.

10.1101/143701 — bioinformatics — Posted on 2017-05-30

113 Transcription Factors Recognize DNA Shape Without Nucleotide Recognition

Samee, M. A. H.; Bruneau, B.; Pollard, K.

10.1101/143677 — systems biology — Posted on 2017-05-29

114 Translation Inhibition And Resource Balance In The Cell-Free Gene Expression System

Nagaraj, V. H.; Greene, J. M.; Sengupta, A. M.; Sontag, E.

10.1101/142869 — synthetic biology — Posted on 2017-05-29

115 Inoculation Of Biocontrol Bacteria Alleviated Panax ginseng Replanting Problem

Dong, L.; Xu, J.; Zhang, L.; Wei, G.; Su, H.; Yang, J.; Qian, J.; Xu, R.; Liao, B.; Shen, L.; Wu, M.; Cheng, R.; Chen, S.

10.1101/143412 — microbiology — Posted on 2017-05-29

116 Meta-Analysis Of Sequence-Based Association Studies Across Three Cattle Breeds Reveals 25 QTL For Fat And Protein Percentages In Milk At Nucleotide Resolution

Pausch, H.; Emmerling, R.; Gredler-Grandl, B.; Fries, R.; Daetwyler, H. D.; Goddard, M. E.

10.1101/143404 — genomics — Posted on 2017-05-29

117 Multiplex genome editing by natural transformation (MuGENT) for synthetic biology in Vibrio natriegens

Dalia, T. N.; Hayes, C. A.; Stolyar, S.; Marx, C. J.; McKinlay, J. B.; Dalia, A. B.

10.1101/122655 — synthetic biology — Posted on 2017-05-29

118 Marginal Returns And Levels Of Research Grant Support Among Scientists Supported By The National Institutes Of Health

Lauer, M. S.; Roychowdhury, D.; Patel, K.; Walsh, R.; Pearson, K.

10.1101/142554 — scientific communication and education — Posted on 2017-05-29

119 Molecular Correlate Of Mouse Executive Function. Top-Down And Bottom-Up Information Flows Complementation By Ntng Gene Paralogs

Prosselkov, P.; Zhang, Q.; Goto, H.; Polygalov, D.; McHugh, T. J.; Itohara, S.

10.1101/139444 — genetics — Posted on 2017-05-29

120 A New Quantitative Cell Microscopy Approach Reveals Mechanistic Insights Into Clearance Of Membrane Substrates By The AAA Protein Msp1

Weir, N. R.; Kamber, R. A.; Martenson, J. S.; Denic, V.

10.1101/136572 — cell biology — Posted on 2017-05-29

121 ANNOgesic: A Pipeline To Translate Bacterial/Archaeal RNA-Seq Data Into High-Resolution Genome Annotations

Yu, S.-H.; Vogel, J.; Forstner, K. U.

10.1101/143081 — bioinformatics — Posted on 2017-05-29

122 Simultaneous evolution of multiple dispersal components and kernel

Tung, S.; Mishra, A.; Shreenidhi, P. M.; Aamir Sadiq, M.; Joshi, S.; Shree Sruti, V. R.; Dey, S.

10.1101/037606 — ecology — Posted on 2017-05-29

123 The Dense-Core Vesicle Maturation Protein CCCP-1 Binds RAB-2 and Membranes through its C-terminal Domain

Cattin-Ortola, J.; Topalidou, I.; Dosey, A.; Merz, A. J.; Ailion, M.

10.1101/105668 — biochemistry — Posted on 2017-05-29

124 Optimal Number Of Spacers In CRISPR Arrays

Martynov, A.; Severinov, K.; Ispolatov, Y.

10.1101/143073 — systems biology — Posted on 2017-05-29

125 Graphene Oxide-Quenching-Based Fluorescence In Situ Hybridization (G-FISH) To Detect RNA In Tissue: Simple And Fast Tissue RNA Diagnostics

Hwang, D. W.; Choi, Y. R.; Kim, D.; Park, H. Y.; Kim, K. W.; Kim, M. Y.; Park, C.-K.; Lee, D. S.

10.1101/143628 — molecular biology — Posted on 2017-05-29

126 Meiotic Crossover Patterning In The Absence Of ATR: Loss Of Interference And Assurance But Not The Centromere Effect

Brady, M.; McMahan, S.; Sekelsky, J.

10.1101/143651 — genetics — Posted on 2017-05-29

127 Regional Polygenic Covariance Reveals Heterogeneity In The Shared Heritability Between Complex Traits

Pare, G.; Mao, S.; Deng, W. Q.

10.1101/143644 — genetics — Posted on 2017-05-29

128 Mitigating Mitochondrial Genome Erosion Without Recombination

Radzvilavicius, A.; Kokko, H.; Christie, J.

10.1101/143586 — genetics — Posted on 2017-05-29

129 Evolutionary Isolation And Phylogenetic Diversity Loss Under Random Extinction Events

Steel, M.; Pourfaraj, V.; Chaudhary, A.; Mooers, A.

10.1101/143594 — evolutionary biology — Posted on 2017-05-29

130 Integrating Over Uncertainty In Spatial Scale Of Response Within Multispecies Occupancy Models Yields More Accurate Assessments Of Community Composition

Frishkoff, L. O.; Mahler, D. L.; Fortin, M.-J.

10.1101/143669 — ecology — Posted on 2017-05-29

131 Microbial Network, Phylogenetic Diversity And Community Membership In The Active Layer Across A Permafrost Thaw Gradient

Mondav, R.; McCalley, C. K.; Hodgkins, S. B.; Frolking, S.; Saleska, S. R.; Rich, V. I.; Chanton, J. P.; Crill, P. M.

10.1101/143578 — ecology — Posted on 2017-05-29

132 The Relationship Between Cancer Progression And Social Environment In Drosophila

Dawson, E.; Bailly, T.; Dos Santos, J.; Moreno, C.; Devilliers, M.; Maroni, B.; Sueur, C.; Casali, A.; Ujvari, B.; Thomas, F.; Montagne, J.; Mery, F.

10.1101/143560 — animal behavior and cognition — Posted on 2017-05-29

133 Metabolic Constraints And Quantitative Design Principles In Gene Expression During Adaption Of Yeast To Heat Shock

Pereira, T.; Vilaprinyo, E.; Belli, G.; Herrero, E.; Salvado, B.; Sorribas, A.; Altes, G.; Alves, R.

10.1101/143487 — systems biology — Posted on 2017-05-29

134 Distinctive Behavioural Anomalies, Structural Brain Phenotypes And Cortical Hyper-Connectivity In Chd8-Deficient Mice

Suetterlin, P.; Hurley, S.; Mohan, C.; Riegman, K. L. H.; Caruso, A.; Pagani, M.; Ellegood, J.; Galbusera, A.; Crespo-Enriquez, I.; Michetti, C.; Ellingford, R.; Brock, O.; Delogu, A.; Francis-West, P.; Lerch, J. P.; Scattoni, M. L.; Gozzi, A.; Fernandes, C.; Basson, A.

10.1101/143552 — neuroscience — Posted on 2017-05-29

135 Global Effects Of Focal Brain Tumours On Functional Complexity And Network Robustness

Hart, M. G.; Romero-Garcia, R.; Price, S. J.; Suckling, J.

10.1101/142844 — neuroscience — Posted on 2017-05-29

136 Polycystic Ovary Syndrome As An Endogenous Alcoholic Polycystic Ovary Syndrome

de Medeiros, I. C.; de Lima, J. G.

10.1101/143495 — molecular biology — Posted on 2017-05-29

137 Improved Transcriptome Sampling Pinpoints 26 Paleopolyploidy Events In Caryophyllales, Including Two Paleo-Allopolyploidy Events

Yang, Y.; Moore, M.; Brockington, S.; Mikenas, J.; Olivieri, J.; Walker, J.; Smith, S.

10.1101/143529 — evolutionary biology — Posted on 2017-05-29

138 Bayesian Inference Of Phylogenetic Networks From Bi-allelic Genetic Markers

Zhu, J.; Wen, D.; Yu, Y.; Meudt, H.; Nakhleh, L.

10.1101/143545 — evolutionary biology — Posted on 2017-05-29

139 Two-Step Interphase Microtubule Disassembly Aids Spindle Morphogenesis

Mchedlishvili, N.; Matthews, H. K.; Corrigan, A.; Baum, B.

10.1101/126342 — cell biology — Posted on 2017-05-29

140 nQuire: A Statistical Framework For Ploidy Estimation Using Next Generation Sequencing

Weiss, C. L.; Pais, M.; Cano, L. M.; Kamoun, S.; Burbano, H. A.

10.1101/143537 — bioinformatics — Posted on 2017-05-29

141 Early And Late Components Of EEG Delay Activity Correlate Differently With Scene Working Memory Performance

Ellmore, T. M.; Ng, K.; Reichert, C. P.

10.1101/143461 — neuroscience — Posted on 2017-05-29

142 Human Migration And The Spread Of Malaria Parasites To The New World

Rodrigues, P. T.; Valdivia, H. O.; Oliveira, T. C.; Alves, J. M. P.; Duarte, A. M. R. C.; Cerutti-Junior, C.; Buery, J. C.; Brito, C. F. A.; Souza, J. C.; Hirano, Z. M. B.; Malafronte, R. S.; Ladeia-Andrade, S.; Mita, T.; Santamaria, A. M.; Calzada, J. E.; Kawamoto, F.; Raijmakers, L. R. J.; Mueller, I.; Pacheco, M. A.; Escalante, A. A.; Felger, I.; Ferreira, M. U.

10.1101/141853 — microbiology — Posted on 2017-05-29

143 Influence Of Non-Metabolic Microbial Growth Promotors (AMP Activators) On The Sensitivity To Antimicrobials In The Actually Multiresistant Microbial Strains

Martynov, A.; Osolodchenko, T.; Farber, B.; Farber, S.

10.1101/143438 — microbiology — Posted on 2017-05-29

144 Nucleus Specific Expression In The Multinucleated Mushroom-Forming Fungus Agaricus bisporus Reveals Different Nuclear Regulatory Programs

Gehrmann, T.; Pelkmans, J. F.; Ohm, R. A.; Vos, A. M.; Sonnenberg, A. S. M.; Baars, J. J. P.; Wosten, H. A. B.; Reinders, M. J. T.; Abeel, T.

10.1101/141689 — microbiology — Posted on 2017-05-29

145 Senescence As A Defense Strategy Against Parasites

Chin, R. Y.

10.1101/143362 — evolutionary biology — Posted on 2017-05-29

146 Parasite-Driven Replacement Of A Sexual By A Closely Related Asexual Taxon In Nature

Lohr, J. N.; Haag, C.

10.1101/143446 — evolutionary biology — Posted on 2017-05-29

147 Clear Cell Renal Cell Carcinoma With Biallelic Inactivation Of CDKN2A/B On 9p21 Have Distinct Gene Expression Signature And Are Associated With Poor Prognosis

Girgis, A. H.

10.1101/143180 — cancer biology — Posted on 2017-05-29

148 Theory On The Rate Equation Of Michaelis-Menten Type Single-Substrate Enzyme Catalyzed Reactions

Murugan, R.

10.1101/143396 — biochemistry — Posted on 2017-05-29

149 Back-Translating A Rodent Measure Of Negative Bias Into Humans: The Impact Of Induced Anxiety And Unmedicated Mood And Anxiety Disorders

Aylward, J.; Hales, C.; Robinson, E.; Robinson, O. J.

10.1101/143453 — animal behavior and cognition — Posted on 2017-05-29

150 Single-Cell Transcriptomic Analysis Of CA1 Inhibitory Neurons

Harris, K. D.; Bengtsson Gonzales, C.; Hochgerner, H.; Skene, N. G.; Magno, L.; Katona, L.; Somogyi, P.; Kessaris, N.; Linnarsson, S.; Hjerling-Leffler, J.

10.1101/143354 — neuroscience — Posted on 2017-05-29

151 Meta-Analysis Of Sequence-Based Association Studies Across Three Cattle Breeds Reveals 25 QTL For Fat And Protein Percentages In Milk At Nucleotide Resolution

Pausch, H.; Emmerling, R.; Gredler-Grandl, B.; Fries, R.; Daetwyler, H. D.; Goddard, M. E.

10.1101/143404 — genomics — Posted on 2017-05-29

152 The Brain As An Efficient And Robust Adaptive Learner

Deneve, S.; Alemi, A.; Bourdoukan, R.

10.1101/143222 — neuroscience — Posted on 2017-05-29

153 The Abrogation Of Condensin Function Provides Independent Evidence For Defining The Self-Renewing Population Of Pluripotent Stem Cells

Lai, A.; Kosaka, N.; Abnave, P.; Sahu, S.; Aboobaker, A.

10.1101/143339 — developmental biology — Posted on 2017-05-29

154 Biochemical Adaptations Of The Retina And Retinal Pigment Epithelium Support A Metabolic Ecosystem In The Vertebrate Eye

Kanow, M. A.; Giarmarco, M. M.; Jankowski, C.; Tsantilas, K.; Engel, A. L.; Du, J.; Linton, J. D.; Farnsworth, C. C.; Sloat, S. R.; Lindsay, K. J.; Parker, E. D.; Brockerhoff, S. E.; Sadilek, M.; Chao, J. R.; Hurley, J. B.

10.1101/143347 — biochemistry — Posted on 2017-05-29

155 Arabidopsis JASMONATE-INDUCED OXYGENASES down-regulate plant immunity by hydroxylation and inactivation of the hormone jasmonic acid

Caarls, L.; Elberse, J.; Awwanah, M.; Ludwig, N. R.; de Vries, M.; Zeilmaker, T.; Van Wees, S. C. M.; Schuurink, R. C.; Van den Ackerveken, G.

10.1101/102103 — plant biology — Posted on 2017-05-28

156 Systematic tissue-specific functional annotation of the human genome highlights immune-related DNA elements for late-onset Alzheimer’s disease

Lu, Q.; Powles, R. L.; Abdallah, S.; Ou, D.; Wang, Q.; Hu, Y.; Lu, Y.; Liu, W.; Li, B.; Mukherjee, S.; Crane, P. K.; Zhao, H.

10.1101/078865 — genetics — Posted on 2017-05-28

157 dms2dfe: Comprehensive Workflow for Analysis of Deep Mutational Scanning Data

Dandage, R.; Chakraborty, K.

10.1101/072645 — bioinformatics — Posted on 2017-05-28

158 Silencing Of Transposable Elements May Not Be A Major Driver Of Regulatory Evolution In Primate Induced Pluripotent Stem Cells

Ward, M. C.; Zhao, S.; Luo, K.; Pavlovic, B. J.; Karimi, M. M.; Stephens, M.; Gilad, Y.

10.1101/142455 — genomics — Posted on 2017-05-28

159 Improving tauG-Control Of Action In PD

Schogler, B.; Polokoff, R.; Pepping, G.-J.; Perkins, J.; Lee, D.

10.1101/143313 — neuroscience — Posted on 2017-05-28

160 SpatialDE - Identification Of Spatially Variable Genes

Svensson, V.; Teichmann, S. A.; Stegle, O.

10.1101/143321 — genomics — Posted on 2017-05-28

161 Sleep Benefits Memory For Semantic Category Structure While Preserving Exemplar-Specific Information

Schapiro, A. C.; McDevitt, E. A.; Chen, L.; Norman, K. A.; Mednick, S. C.; Rogers, T. T.

10.1101/143172 — neuroscience — Posted on 2017-05-28

162 SRGAP2 And The Gradual Evolution Of The Modern Human Language Faculty

Mari, M.; Martins, P. T.; Boeckx, C.

10.1101/143248 — genetics — Posted on 2017-05-28

163 High-Resolution Mapping Of cis-Regulatory Variation In Budding Yeast

Kita, R.; Venkataram, S.; Zhou, Y.; Fraser, H.

10.1101/143164 — genetics — Posted on 2017-05-28

164 Repurposing Tofacitinib As An Anti-Myeloma Therapeutic To Reverse Growth-Promoting Effects Of The Bone Marrow Microenvironment

Lam, C.; Murnane, M.; Liu, H.; Smith, G. A.; Wong, S.; Taunton, J.; Liu, J. O.; Mitsiades, C. S.; Hann, B. C.; Aftab, B. T.; Wiita, A. P.

10.1101/143206 — cancer biology — Posted on 2017-05-28

165 Bias, Robustness And Scalability In Differential Expression Analysis Of Single-Cell RNA-Seq Data

Soneson, C.; Robinson, M. D.

10.1101/143289 — bioinformatics — Posted on 2017-05-28

166 CAM: A Quality Control Pipeline For MNase-Seq Data

Hu, S.; Chen, X.; Liao, J.; Chen, Y.; Zhao, C.; Zhang, Y.

10.1101/143263 — bioinformatics — Posted on 2017-05-28

167 Dr.seq2: A Quality Control And Analysis Pipeline For Parallel Single Cell Transcriptome And Epigenome Data

Zhao, C.; Hu, S.; Huo, X.; Zhang, Y.

10.1101/143271 — bioinformatics — Posted on 2017-05-28

168 Characterization Of Imprinted Genes In Rice Reveals Post-Fertilization Regulation And Conservation At Some Loci Of Imprinting In Plant Species

Chen, C.; Li, T.; Zhu, S.; Liu, Z.; Shi, Z.; Zheng, X.; Chen, R.; Huang, J.; Shen, Y.; Luo, S.; Wang, L.; Liu, Q.-Q.; E, Z.

10.1101/143214 — plant biology — Posted on 2017-05-28

169 Reverse-Engineering Biological Networks From Large Data Sets

Natale, J. L.; Hofmann, D.; Hernandez, D. G.; Nemenman, I.

10.1101/142034 — bioinformatics — Posted on 2017-05-28

170 Opportunities And Obstacles For Deep Learning In Biology And Medicine

Ching, T.; Himmelstein, D. S.; Beaulieu-Jones, B. K.; Kalinin, A. A.; Do, B. T.; Way, G. P.; Ferrero, E.; Agapow, P.-M.; Xie, W.; Rosen, G. L.; Lengerich, B. J.; Israeli, J.; Lanchantin, J.; Woloszynek, S.; Carpenter, A. E.; Shrikumar, A.; Xu, J.; Cofer, E. M.; Harris, D. J.; DeCaprio, D.; Qi, Y.; Kundaje, A.; Peng, Y.; Wiley, L. K.; Segler, M. H. S.; Gitter, A.; Greene, C. S.

10.1101/142760 — bioinformatics — Posted on 2017-05-28

171 Mechanical And Tactile Incompatibilities Cause Reproductive Isolation Between Two Young Damselfly Species

Barnard, A.; Fincke, O. M.; McPeek, M. A.; Masly, J. P.

10.1101/142828 — evolutionary biology — Posted on 2017-05-28

172 Simulated forward and backward self motion, based on realistic parameters, causes strong motion induced blindness

Thomas, V. A.; Davidson, M.; Zakavi, P.; Tsuchiya, N.; van Boxtel, J.

10.1101/057323 — neuroscience — Posted on 2017-05-27

173 A Comprehensive Assessment of the Genetic Determinants in Salmonella Typhimurium for Resistance to Hydrogen Peroxide Using Proteogenomics

Karash, S.; Liyanage, R.; Qassab, A.; Lay, J.; Kwon, Y. M.

10.1101/115360 — microbiology — Posted on 2017-05-27

174 Analysis And Correction Of Compositional Bias In Sparse Sequencing Count Data

Kumar, M. S.; Slud, E. V.; Okrah, K.; Hicks, S. C.; Hannenhalli, S.; Corrada Bravo, H.

10.1101/142851 — genomics — Posted on 2017-05-27

175 Germline De Novo Mutation Clusters Arise During Oocyte Aging In Genomic Regions With Increased Double-Strand Break Incidence

Goldmann, J. M.; Seplyarskiy, V. B.; Wong, W. S. W.; Vilboux, T.; Bodian, D. L.; Solomon, B. D.; Veltman, J. A.; Deeken, J. F.; Gilissen, C.; Niederhuber, J. E.

10.1101/140111 — genomics — Posted on 2017-05-27

176 Discovery Of Drought-Responsive Transposable Element-Related Peach miRNAs

Kurden Pekmezci, A.; Karakulah, G.; Unver, T.

10.1101/143115 — plant biology — Posted on 2017-05-27

177 Obesity/Type II Diabetes Promotes Function-Limiting Changes In Flexor Tendon Extracellular Matrix Organization That Are Not Reversed By Restoring Normal Metabolic Function

Glasner, M.; Loiselle, A.

10.1101/143149 — pathology — Posted on 2017-05-27

178 Rapid feedback responses are flexibly coordinated across arm muscles to support goal-directed reaching

Weiler, J.; Gribble, P. L.; Pruszynski, J. A.

10.1101/143008 — neuroscience — Posted on 2017-05-27

179 Decoding The Influence Of Anticipatory States On Visual Perception In The Presence Of Temporal Distractors

Van Ede, F.; Chekroud, S. R.; Stokes, M. G.; Nobre, A. C.

10.1101/143123 — neuroscience — Posted on 2017-05-27

180 TauG-Guidance Of Neonatal Vocalizing

Lee, D.; Obregon, M.; Delafield-Butt, J.

10.1101/143156 — neuroscience — Posted on 2017-05-27

181 Murine Glomerular Transcriptome Links Endothelial Cell-Specific Molecule-1 Deficiency With Susceptibility To Diabetic Nephropathy

Zheng, X.; Soroush, F.; Long, J.; Hall, E. T.; Adishesha, P. K.; Bhattacharya, S.; Kiani, M. F.; Bhalla, V.

10.1101/143016 — immunology — Posted on 2017-05-27

182 Reviving A Lost Species: The Case Of The Floreana Galapagos Giant Tortoise Chelonoidis elephantopus

Miller, J.; Quinzin, M. C.; Poulakakis, N.; Gibbs, J. P.; Beheregaray, L. B.; Garrick, R. C.; Russello, M. A.; Ciofi, C.; Edwards, D. L.; Hunter, E. A.; Tapia, W.; Rueda, D.; Carrion, J.; Valdivieso, A. A.; Caccone, A.

10.1101/143131 — evolutionary biology — Posted on 2017-05-27

183 Cell-Accurate Optical Mapping Across The Entire Developing Heart

Weber, M.; Scherf, N.; Kohl, P.; Huisken, J.

10.1101/143057 — biophysics — Posted on 2017-05-27

184 ANNOgesic: A Pipeline To Translate Bacterial/Archaeal RNA-Seq Data Into High-Resolution Genome Annotations

Yu, S.-H.; Vogel, J.; Foerstner, K. U.

10.1101/143081 — bioinformatics — Posted on 2017-05-27

185 Optogenetic Single-Cell Control Of Transcription Achieves Mrna Tunability And Reduced Variability

Rullan, M.; Benzinger, D.; Schmidt, G. W.; Gupta, A.; Milias-Argeitis, A.; Khammash, M.

10.1101/142893 — synthetic biology — Posted on 2017-05-27

186 Parsing Of Compositions And Microstructure Characteristics For Rust-Spots Of Pear Pericarp

Nan, L.; Chen, S.; Li, Y.; Liu, Y.; Jiang, Y.; Yang, Y.; Xu, C.; Chen, G.

10.1101/142877 — plant biology — Posted on 2017-05-27

187 Spatial Specificity Of Auxin Responses Coordinates Wood Formation

Brackmann, K.; Jouannet, V.; Qi, J.; Schlamp, T.; Gruenwald, K.; Sanchez, P.; Greb, T.

10.1101/142885 — plant biology — Posted on 2017-05-27

188 Cooperative Interactions Enable Singular Olfactory Receptor Expression

Lomvardas, S.; Schieren, I.; Monahan, K.; Cheung, J.; Mumbey-Wafula, A.; Monuki, E.

10.1101/142489 — neuroscience — Posted on 2017-05-27

189 Chondroitin sulfate elicits systemic pathogenesis in mice by interfering with gut microbiota homeostasis

Liao, T.; Chen, Y.-P.; Huang, S.-Q.; Tan, L.-L.; Li, C.-Q.; Huang, X.-A.; Xu, Q.; Wang, Q.; Zeng, Q.-P.

10.1101/142588 — pharmacology and toxicology — Posted on 2017-05-27

190 Function of basal ganglia in tauG-guiding action

Lee, D.; Georgopoulos, A. P.; Pepping, G.-J.

10.1101/143065 — neuroscience — Posted on 2017-05-27

191 An Experiment in Learning the Language of Sequence Motifs: Sequence Logos vs. Finite-State Machines

Francisco, A.; Gagie, T.; Kempa, D.; Salmela, L.; Sverdlov, S.; Toivonen, J.; Ukkonen, E.

10.1101/143024 — bioinformatics — Posted on 2017-05-27

192 OMSV enables accurate and comprehensive identification of large structural variations from nanochannel-based single-molecule optical maps

Li, L.; Kwok, T.-P.; Leung, A. K.-Y.; Lai, Y. Y. Y.; Pang, I. K.; Chung, G. T.-Y.; Mak, A. C. Y.; Poon, A.; Chu, C.; Li, M.; Wu, J. J. K.; Lam, E. T.; Cao, H.; Lin, C.; Sibert, J.; Yiu, S.-M.; Xiao, M.; Lo, K.-W.; Kwok, P.-Y.; Chan, T.-F.; Yip, K. Y.

10.1101/143040 — bioinformatics — Posted on 2017-05-27

193 OCT4 Impedes Cell Fate Redirection By The Melanocyte Lineage Master Regulator MITF

Sheinboim, D.; Maza, I.; Dror, I.; Parikh, S.; Krupalnik, V.; Bell, R. E.; Zviran, A.; Suita, Y.; Hakim, O.; Gutfreund, Y. M.; Khaled, M.; Hanna, J. H.; Levy, C.

10.1101/142943 — developmental biology — Posted on 2017-05-27

194 Predicting Ligand-Dependent Tumors From Multi-Dimensional Signaling Features

Hass, H.; Masson, K.; Wohlgemuth, S.; Paragas, V.; Allen, J.; Sevecka, M.; Pace, E.; Timmer, J.; Stelling, J.; MacBeath, G.; Schoeberl, B.; Raue, A.

10.1101/142901 — systems biology — Posted on 2017-05-27

195 Large-Scale Evolutionary Patterns of Protein Domain Distributions in Eukaryotes

Parikesit, A. A.; Stadler, P. F.; Prohaska, S. J.

10.1101/142182 — bioinformatics — Posted on 2017-05-27

196 Vaxrank: A Computational Tool For Designing Personalized Cancer Vaccines

Rubinsteyn, A.; Hodes, I.; Kodysh, J.; Hammerbacher, J.

10.1101/142919 — bioinformatics — Posted on 2017-05-27

197 Brain xQTL Map: Integrating The Genetic Architecture Of The Human Brain Transcriptome And Epigenome

Ng, B.; White, C. C.; Klein, H. U.; Sieberts, S. K.; McCabe, C.; Patrick, E.; Xu, J.; Yu, L.; Gaiteri, C.; Bennett, D. A.; Mostafavi, S.; De Jager, P. L.

10.1101/142927 — bioinformatics — Posted on 2017-05-27

198 Phosphate Is The Third Nutrient Monitored By TOR In Candida albicans And Provides A Target For Fungal-Specific Indirect TOR Inhibition

Liu, N.-N.; Flanagan, P.; Zeng, J.; Jani, N.; Cardenas, M. E.; Moran, G. P.; Koehler, J. R.

10.1101/142745 — microbiology — Posted on 2017-05-27

199 Enriched expression of genes associated with autism spectrum disorders in human inhibitory neurons

Wang, P.; Zhao, D.; Lachman, H.; Zheng, D.

10.1101/142968 — genetics — Posted on 2017-05-27

200 Acquisition of cell migration defines NK cell differentiation from hematopoietic stem cell precursors

Lee, B. J.; Mace, E. M.

10.1101/142380 — cell biology — Posted on 2017-05-27

201 Forces driving cell sorting in Hydra

Cochet-Escartin, O.; Locke, T. T.; Shi, W. H.; Steele, R. E.; Collins, E.-M. S.

10.1101/142976 — biophysics — Posted on 2017-05-27

202 Deep transcriptome annotation suggests that small and large proteins encoded in the same genes often cooperate

Samandi, S.; Roy, A. V.; Delcourt, V.; Lucier, J.-F.; Gagnon, J.; Beaudoin, M. C.; Vanderperre, B.; Breton, M.-A.; Jacques, J.-F.; Brunelle, M.; Motard, J.; Gagnon-Arsenault, I.; Fournier, I.; Ouangraoua, A.; Hunting, D. J.; Cohen, A. A.; Landry, C. R.; Scott, M. S.; Roucou, X.

10.1101/142992 — biochemistry — Posted on 2017-05-27

203 A Face Identity Hallucination (Palinopsia) Generated By Intracerebral Stimulation Of The Face-Selective Right Lateral Fusiform Cortex

Jonas, J.; Brissart, H.; Hossu, G.; Colnat-Coulbois, S.; Vignal, J.-P.; Rossion, B.; Maillard, L.

10.1101/142786 — neuroscience — Posted on 2017-05-26

204 Reconstructing The Demographic History Of Atlantic Salmon (Salmo salar) Across Its Distribution Range Using Approximate Bayesian Computations

Rougemont, Q.; Bernatchez, L.

10.1101/142372 — evolutionary biology — Posted on 2017-05-26

205 Motor-Like Properties of Non-Motor Enzymes

Slochower, D. R.; Gilson, M. K.

10.1101/121848 — biophysics — Posted on 2017-05-26

206 Comparative Huntington And Parkinson Disease mRNA Analysis Reveals Common Inflammatory Processes

Labadorf, A.; Choi, S. H.; Myers, R. H.

10.1101/139451 — genomics — Posted on 2017-05-26

207 Trends in dissolved organic matter cycling, sediment microbiomes, and methylmercury production across vegetation heterogeneity in a Great Lakes wetland

Graham, E. B.; Knelman, J. E.; Gabor, R. S.; Schooler, S.; MCKNIGHT, D. M.; Nemergut, D. R.

10.1101/072017 — ecology — Posted on 2017-05-26

208 Increasing the time resolution of single-molecule experiments with Bayesian inference

Kinz-Thompson, C. D.; Gonzalez, R. L.

10.1101/099648 — biophysics — Posted on 2017-05-26

209 Marginal Returns And Levels Of Research Grant Support Among Scientists Supported By The National Institutes Of Health

Lauer, M. S.; Roychowdhury, D.; Patel, K.; Walsh, R.; Pearson, K.

10.1101/142554 — scientific communication and education — Posted on 2017-05-26

210 Genetically Engineered Orange Petunias On The Market

Bashandy, H.; Teeri, T. H.

10.1101/142810 — plant biology — Posted on 2017-05-26

211 Translation Inhibition And Resource Balance In The Cell-Free Gene Expression System

Nagaraj, V. H.; Greene, J. M.; Sengupta, A. M.; Sontag, E.

10.1101/142869 — synthetic biology — Posted on 2017-05-26

212 The Peach RGF/GLV Signalling Peptide pCTG134 Is Involved In A Regulatory Circuit That Sustains Auxin And Ethylene Actions

Busatto, N.; Salvagnin, U.; Resentini, F.; Quaresimin, S.; Navazio, L.; Marin, O.; Pellegrini, M.; Costa, F.; Mierke, D. F.; Trainotti, L.

10.1101/141705 — plant biology — Posted on 2017-05-26

213 Single Cell Transcriptomics And Flow Cytometry Reveal Disease-Associated Fibroblast Subsets In Rheumatoid Arthritis

Mizoguchi, F.; Slowikowski, K.; Marshall, J. L.; Wei, K.; Rao, D. A.; Chang, S. K.; Nguyen, H. N.; Noss, E. H.; Turner, J. D.; Earp, B. E.; Blazar, P. E.; Wright, J.; Simmons, B. P.; Donlin, L. T.; Kalliolias, G. D.; Goodman, S. M.; Bykerk, V. P.; Ivashkiv, L. B.; Lederer, J. A.; Hacohen, N.; Nigrovic, P. A.; Filer, A.; Buckley, C. D.; Raychaudhuri, S.; Brenner, M. B.

10.1101/126193 — immunology — Posted on 2017-05-26

214 Disrupting Pitx1 Regulatory Topology Results In Overtly Normal Limb Development

Sarro, R.; Emera, D.; Uebbing, S.; Dutrow, E. V.; Weatherbee, S. D.; Nottoli, T.; Noonan, J. P.

10.1101/138644 — genetics — Posted on 2017-05-26

215 Shared Genetic Architecture Of Asthma With Allergic Diseases: A Genome-wide Cross Trait Analysis Of 112,000 Individuals From UK Biobank

Zhu, Z.; Lee, P. H.; Chaffin, M. D.; Chung, W.; Loh, P.-R.; Lu, Q.; Christiani, D. C.; Liang, L.

10.1101/133322 — genetics — Posted on 2017-05-26

216 Association mapping and haplotype analysis of the pre-harvest sprouting resistance locus Phs-A1 reveals a causal role of TaMKK3-A in global germplasm

Shorinola, O.; Balcarkova, B.; Hyles, J.; Tibbits, J. F. G.; Hayden, M. J.; Holusova, K.; Valarik, M.; Distelfeld, A.; Torada, A.; Barrero, J. M.; Uauy, C.

10.1101/131201 — plant biology — Posted on 2017-05-26

217 Rehabilitation Restores Cortical Activation Profiles And Stabilizes Synaptic Contacts After Stroke

Allegra Mascaro, A. L.; Conti, E.; Lai, S.; Di Giovanna, A. P.; Spalletti, C.; Alia, C.; Quarta, E.; Panarese, A.; Sacconi, L.; Micera, S.; Caleo, M.; Pavone, F. S.

10.1101/141697 — neuroscience — Posted on 2017-05-26

218 Quantitative Analysis Shows That Repair Of Cas9-Induced Double-Strand DNA Breaks Is Slow And Error-Prone

Brinkman, E. K.; Chen, T.; de Haas, M.; Holland, H. A.; Akhtar, W.; van Steensel, B.

10.1101/142802 — molecular biology — Posted on 2017-05-26

219 Analysis And Correction Of Compositional Bias In Sparse Sequencing Count Data

Kumar, M. S.; Slud, E. V.; Okrah, K.; Hicks, S. C.; Hannenhalli, S.; Corrada Bravo, H.

10.1101/142851 — genomics — Posted on 2017-05-26

220 Detecting Epistasis with the Marginal Epistasis Test in Genetic Mapping Studies of Quantitative Traits

Crawford, L.; Zeng, P.; Mukherjee, S.; Zhou, X.

10.1101/066985 — genetics — Posted on 2017-05-26

221 Ecological Network Metrics: Opportunities For Synthesis

Lau, M. K.; Borrett, S. R.; Baiser, B.; Gotelli, N.; Ellison, A. M.

10.1101/125781 — ecology — Posted on 2017-05-26

222 A Reagentless Biosensor For mRNA: A New Tool To Study Transcription

Cook, A.; Hari-Gupta, Y.; Toseland, C. P.

10.1101/142794 — biochemistry — Posted on 2017-05-26

223 In Situ Genotyping Of A Pooled Strain Library After Characterizing Complex Phenotypes

Lawson, M. J.; Camsund, D.; Larsson, J.; Baltekin, O.; Fange, D.; Elf, J.

10.1101/142729 — systems biology — Posted on 2017-05-26

224 Exploiting The ZIP4 Homologue Within The Wheat Ph1 Locus Has Identified Two Lines Exhibiting Homoeologous Crossover In Wheat-Wild Relative Hybrids

Rey, M.-D.; Martin, A. C.; Higgins, J.; Swarbreck, D.; Uauy, C.; Shaw, P.; Moore, G.

10.1101/142596 — plant biology — Posted on 2017-05-26

225 MutS-Homolog2 Silencing Generates Tetraploid Meiocytes In Tomato (Solanum lycopersicum)

Sarma, S.; Pandey, A. K.; Ravi, M.; Sreelakshmi, Y.; Sharma, R.

10.1101/142612 — plant biology — Posted on 2017-05-26

226 Modality-Independent Coding Of Concepts In Prefrontal Cortex

Jung, Y.; Larsen, B.; Walther, D. B.

10.1101/142562 — neuroscience — Posted on 2017-05-26

227 Mutations In Membrin/GOSR2 Reveal Stringent Secretory Pathway Demands Of Dendritic Growth And Synaptic Integrity

Praschberger, R.; Lowe, S.; Malintan, N.; Houlden, H.; Kullmann, D.; Usowicz, M.; Krishnakumar, S.; Hodge, J.; Rothman, J.; Jepson, J.

10.1101/142679 — neuroscience — Posted on 2017-05-26

228 Extensive Tonotopic Mapping Across Auditory Cortex Is Recapitulated By Spectrally-Directed Attention, And Systematically Related To Cortical Myeloarchitecture

Dick, F.; Lehet, M.; Callaghan, M. F.; Keller, T.; Sereno, M. I.; Holt, L.

10.1101/142513 — neuroscience — Posted on 2017-05-26

229 A Possible Role Of Microglia In Zika Virus Infection Of The Fetal Human Brain

Muffat, J.; Li, Y.; Omer, A.; Durbin, A.; Bosch, I.; Bakiasi, G.; Richards, E.; Meyer, A.; Gehrke, L.; Jaenisch, R.

10.1101/142497 — neuroscience — Posted on 2017-05-26

230 Specific Virus-Host Genome Interactions Revealed By Tethered Chromosome Conformation Capture

Li, H.; Kalhor, R.; Li, B.; Su, T.; Berk, A.; Kurdistani, S.; Alber, F.; Chen, L.

10.1101/142604 — microbiology — Posted on 2017-05-26

231 HIV Persistence Alters CXCR4 Expression Patterns In OP9-DL1-Mediated Differentiation Of In Vitro Infected Human Cord Blood CD34+ Cells

Tsukamoto, T.; Okada, S.

10.1101/142539 — microbiology — Posted on 2017-05-26

232 Shared Genetic Architecture Of Asthma With Allergic Diseases: A Genome-wide Cross Trait Analysis Of 112,000 Individuals From UK Biobank

Zhu, Z.; Lee, P. H.; Chaffin, M. D.; Chung, W.; Loh, P.-R.; Lu, Q.; Christiani, D. C.; Liang, L.

10.1101/133322 — genetics — Posted on 2017-05-26

233 Continuity and admixture in the last five millennia of Levantine history from ancient Canaanite and present-day Lebanese genome sequences

Haber, M.; Doumet-Serhal, C.; Scheib, C.; Xue, Y.; Danecek, P.; Mezzavilla, M.; Youhanna, S.; Martiniano, R.; Prado-Martinez, J.; Szpak, M.; Matisoo-Smith, E.; Schutkowski, H.; Mikulski, R.; Zalloua, P.; Kivisild, T.; Tyler-Smith, C.

10.1101/142448 — genetics — Posted on 2017-05-26

234 A Sequencer Coming Of Age: De Novo Genome Assembly Using MinION Reads

de Lannoy, C. V.; de Ridder, D.; Risse, J.

10.1101/142711 — genetics — Posted on 2017-05-26

235 Thirty-five experimental fisheries reveal the mechanisms of selection

Nussle, S.; Hendry, A. P.; Knapp, R.; Bogan, M.; Sturrock, A.; Carlson, S.

10.1101/141259 — evolutionary biology — Posted on 2017-05-26

236 Evolution of bird communication signals: transference between signals mediated by sensory drive

Laverde-R., O.; Ryan, M. J.; Cadena, D.

10.1101/142463 — evolutionary biology — Posted on 2017-05-26

237 14-3-3 Negatively Regulates Actin Filament Formation In The Deep Branching Eukaryote Giardia lamblia

Krtkova, J.; Xu, J.; Lalle, M.; Steele-Ogus, M.; Alas, G. C. M.; Sept, D.; Paredez, A. R.

10.1101/142505 — cell biology — Posted on 2017-05-26

238 A Multi-Stage Representation Of Cell Proliferation As A Markov Process

Yates, C. A.; Ford, M. J.; Mort, R. L.

10.1101/142521 — cell biology — Posted on 2017-05-26

239 Postmitotic Separation Enables Selective Niche Retention Of One Daughter Cell In Intestinal Crypts And Is Facilitated By Interkinetic Nuclear Migration And Basal Tethering

Carroll, T.; Langlands, A. J.; Osborne, J. M.; Newton, I. P.; Appleton, P. L.; Nathke, I.

10.1101/142752 — cancer biology — Posted on 2017-05-26

240 RANKL Signaling Sustains Primary Tumor Growth In Genetically Engineered Mouse Models Of Lung Adenocarcinoma

Faget, J.; Contat, C.; Zangger, N.; Peters, S.; Meylan, E.

10.1101/142620 — cancer biology — Posted on 2017-05-26

241 Wireless Implantable Sensor For Non-Invasive, Longitudinal Quantification Of Axial Strain Across Rodent Long Bone Defects

Klosterhoff, B. S.; Ong, K. G.; Krishnan, L.; Hetzendorfer, K. M.; Chang, Y.-H.; Allen, M. G.; Guldberg, R. E.; Willett, N. J.

10.1101/142778 — bioengineering — Posted on 2017-05-26

242 Oxygen-sensing neurons reciprocally regulate peripheral lipid metabolism via neuropeptide signaling in Caenorhabditis elegans

Hussey, R.; Witham, E.; Vanstrum, E.; Mesgarzadeh, J.; Ratanpal, H.; Srinivasan, S.

10.1101/142422 — neuroscience — Posted on 2017-05-26

243 TRAIN in response to treatment with anti-cancer small molecule destabilizing chromatin

Leonova, Y.; Safina, A.; Nesher, E.; Sandlesh, P.; Pratt, R.; Burkhart, C.; Lipchick, B.; Frangou, C.; Koman, I.; Wang, J.; Kirsanov, K.; Yakubovskaya, M.; Gudkov, A.; Gurova, K.

10.1101/142471 — molecular biology — Posted on 2017-05-26

244 The eIF2α Kinase Heme Regulated Inhibitor (HRI) Protects The Host From Infection By Regulating Intracellular Pathogen Trafficking

Bahnan, W.; Boucher, J.; Gayle, P.; Shrestha, N.; Rosen, M.; Aktas, B.; Adkins, B.; Ager, A.; Khan, W.; Schesser, K.

10.1101/142406 — immunology — Posted on 2017-05-26

245 Control of microtubule dynamics using an optogenetic microtubule plus end-F-actin cross-linker

Adikes, R. C.; Hallett, R. A.; Saway, B. F.; Kuhlman, B.; Slep, K. C.

10.1101/142414 — cell biology — Posted on 2017-05-26

246 Molybdenum-based diazotrophy in a Sphagnum peatland in northern Minnesota

Warren, M. J.; Lin, X.; Gaby, J. C.; Kretz, C. B.; Kolton, M.; Morton, P. L.; Pett-Ridge, J.; Weston, D. J.; Schadt, C. W.; Kostka, J. E.; Glass, J. B.

10.1101/114918 — microbiology — Posted on 2017-05-25

247 Efficiency Of Genomic Prediction Of Non-Assessed Single Crosses

Viana, J. M. S.; Pereira, H. D.; Mundim, G. B.; Piepho, H.-P.; Silva, F. F.

10.1101/141440 — genetics — Posted on 2017-05-25

248 Native KCC2 Interactome Reveals PACSIN1 As A Critical Regulator Of Synaptic Inhibition

Mahadevan, V.; Khademullah, C. S.; Dargaei, Z.; Chevrier, J.; Uvarov, P.; Kwan, J.; Bagshaw, R. D.; Pawson, T.; Emili, A.; De Koninck, Y.; Anggono, V.; Airaksinen, M.; Woodin, M. A.

10.1101/142265 — neuroscience — Posted on 2017-05-25

249 Prior Knowledge And Sampling Model Informed Learning With Single Cell RNA-Seq Data

Mukherjee, S.; Zhang, Y.; Kannan, S.; Seelig, G.

10.1101/142398 — bioinformatics — Posted on 2017-05-25

250 Comparative Huntington And Parkinson Disease mRNA Analysis Reveals Common Inflammatory Processes

Labadorf, A.; Choi, S. H.; Myers, R. H.

10.1101/139451 — genomics — Posted on 2017-05-25

251 Reconstructing The Demographic History Of Atlantic Salmon (Salmo salar) Across Its Distribution Range Using Approximate Bayesian Computations

Rougemont, Q.; Bernatchez, L.

10.1101/142372 — evolutionary biology — Posted on 2017-05-25

252 Carbon inputs from riparian vegetation limit oxidation of physically-bound organic carbon via biochemical and thermodynamic processes

Graham, E. B.; Tfaily, M.; Crump, A. R.; Goldman, A. E.; Arntzen, E.; Romero, E.; Resch, C. T.; Kennedy, D. W.; Stegen, J. C.

10.1101/105486 — ecology — Posted on 2017-05-25

253 DIA-Pipe: Identification and Quantification of Post-Translational Modifications using exclusively Data-Independent Acquisition

Meyer, J. G.; Mukkamalla, S.; Nesvizhskii, A. I.; Gibson, B. W.; Schilling, B.

10.1101/141382 — systems biology — Posted on 2017-05-25

254 Olfactory Receptors Are Required For Social Behavior And Neural Plasticity In Ants, As Evidenced By CRISPR-Mediated Gene Knockout

Yan, H.; Opachaloemphan, C.; Mancini, G.; Yang, H.; Gallitto, M.; Mlejnek, J.; Haight, K.; Ghaninia, M.; Huo, L.; Leibholz, A.; Slone, J.; Zhou, X.; Traficante, M.; Penick, C. A.; Dolezal, K.; Gokhale, K.; Stevens, K.; Fetter-Pruneda, I.; Bonasio, R.; Zwiebel, L. J.; Berger, S.; Liebig, J.; Reinberg, D.; Desplan, C.

10.1101/142232 — neuroscience — Posted on 2017-05-25

255 Phenotype-Driven Transitions In Regulatory Network Structure

Padi, M.; Quackenbush, J.

10.1101/142281 — systems biology — Posted on 2017-05-25

256 CA1 And CA3 Differentially Support Spontaneous Retrieval Of Episodic Contexts Within Human Hippocampal Subfields

Dimsdale-Zucker, H. R.; Ritchey, M.; Ekstrom, A. D.; Yonelinas, A. P.; Ranganath, C.

10.1101/142349 — neuroscience — Posted on 2017-05-25

257 Connecting Brain Responsivity And Real-World Risk Taking: Strengths And Limitations Of Current Methodological Approaches

Sherman, L. E.; Steinberg, L.; Chein, J.

10.1101/142331 — neuroscience — Posted on 2017-05-25

258 Mosaic Chromosomal Aneuploidy Detection By Sequencing (MAD-seq)

Kong, Y.; Berko, E. R.; Marcketta, A.; Maqbool, S. B.; Simoes-Pires, C. A.; Kronn, D. F.; Ye, K. Q.; Suzuki, M.; Auton, A.; Greally, J. M.

10.1101/142299 — genetics — Posted on 2017-05-25

259 Evaluating Fast Maximum Likelihood-Based Phylogenetic Programs Using Empirical Phylogenomic Data Sets

Zhou, X.; Shen, X.-X.; Hittinger, C. T.; Rokas, A.

10.1101/142323 — evolutionary biology — Posted on 2017-05-25

260 A Novel Post Hoc Method For Detecting Index Switching Finds No Evidence For Increased Switching On The Illumina HiSeq X

Owens, G. L.; Todesco, M.; Drummond, E. B. M.; Yeaman, S.; Rieseberg, L. H.

10.1101/142356 — bioinformatics — Posted on 2017-05-25

261 Nanoscale Imaging Approaches To Quantifying The Electrical Properties Of Pathogenic Bacteria

Berthelot, R.; Neethirajan, S.

10.1101/142315 — bioengineering — Posted on 2017-05-25

262 Inferring Functional Neural Connectivity With Deep Residual Convolutional Networks

Dunn, T. W.; Koo, P. K.

10.1101/141010 — neuroscience — Posted on 2017-05-25

263 Robust Estimation Of Hi-C Contact Matrices Using Fused Lasso Reveals Preferential Insulation Of Super-Enhancers By Strong TAD Boundaries

Gong, Y.; Lazaris, C.; Lozano, A.; Kambadur, P.; Ntziachristos, P.; Aifantis, I.; Tsirigos, A.

10.1101/141481 — bioinformatics — Posted on 2017-05-25

264 Serial Crystallography with Multi-stage Merging oi 1000’s of Images

Bernstein, H. J.; Andrews, L. C.; Foadi, J.; Fuchs, M. R.; Jakoncic, J.; McSweeney, S.; Schneider, D. K.; Shi, W.; Skinner, J.; Soares, A.; Yamada, Y.

10.1101/141770 — bioinformatics — Posted on 2017-05-25

265 Functional Asymmetry In The Central Brain Regions In Boys With Attention Deficit Hyperactivity Disorder Detected By Event Related Potentials During Performance Of The Attentional Network Test

Abramov, D. M.; Mourao, C. A.; Cunha, C. Q.; Pontes, M. C.; Galhanone, P. R.; deAzevedo, L. C.; Lazarev, V. V.

10.1101/118380 — neuroscience — Posted on 2017-05-25

266 The resistome of common human pathogens

Munck, C.; Ellabaan, M.; Klausen, M. S.; Sommer, M. O. A.

10.1101/140194 — microbiology — Posted on 2017-05-25

267 Excess Mortality Related To Chikungunya Epidemics In The Context Of Co-circulation Of Other Arboviruses In Brazil

Freitas, A. R. R.; Cavalcanti, L. P. G.; von Zuben, A. P. B.; Donalisio, M. R.

10.1101/140491 — epidemiology — Posted on 2017-05-25

268 Software Application Profile: mrrobust - A Tool For Performing Two-Sample Summary Mendelian Randomization Analyses

Spiller, W.; Davies, N. M.; Palmer, T. M.

10.1101/142125 — epidemiology — Posted on 2017-05-25

269 Long-Term Trends In The Contribution Of Major Causes Of Death To The Black-White Life Expectancy Gap By US State

Riddell, C. A.; Morrison, K. T.; Harper, S. S.; Kaufman, J. S.

10.1101/140152 — epidemiology — Posted on 2017-05-25

270 Association Between A Functional Polymorphism rs10830963 In Melatonin Receptor 1B And Risk Of Gestational Diabetes Mellitus: An Updated Meta-Analysis

Yu, X.-y.; Wang, Q.-q.; Qin, L.-y.; Peng, L.-x.; Chen, Z.-m.; Qin, X.-m.; Wang, Y.-c.; Shi, Q.-f.; Yu, H.-p.

10.1101/141515 — epidemiology — Posted on 2017-05-25

271 Detailed Analyses Of Stall Force Generation In Mycoplasma mobile Gliding

Mizutani, M.; Tulum, I.; Kinosita, Y.; Nishizaka, T.; Miyata, M.

10.1101/142133 — biophysics — Posted on 2017-05-25

272 Filament Rigidity And Connectivity Tune The Deformation Modes Of Active Biopolymer Networks

Stam, S.; Freedman, S. L.; Banerjee, S.; Weirich, K. L.; Dinner, A. R.; Gardel, M. L.

10.1101/141796 — biophysics — Posted on 2017-05-25

273 Pheno4J: A Gene To Phenotype Graph Database

Mughal, S.; Moghul, I.; Yu, J.; Clark, T.; Gregory, D. S.; Pontikos, N.

10.1101/142257 — bioinformatics — Posted on 2017-05-25

274 Learning Fast And Slow: Deviations From The Matching Law Can Reflect An Optimal Strategy Under Uncertainty

Iigaya, K.; Ahmadian, Y.; Sugrue, L.; Corrado, G.; Loewenstein, Y.; Newsome, W. T.; Fusi, S.

10.1101/141309 — neuroscience — Posted on 2017-05-25

275 Super-Resolution Microscopy Reveals That Disruption Of Ciliary Transition Zone Architecture Is A Cause Of Joubert Syndrome

Shi, X.; Garcia, G.; Van De Weghe, J. C.; McGorty, R.; Pazour, G. J.; Doherty, D.; Huang, B.; Reiter, J. F.

10.1101/142042 — cell biology — Posted on 2017-05-25

276 A Combined Use Of Intravoxel Incoherent Motion MRI Parameters Can Differentiate Early Stage Hepatitis-B Fibrotic Livers From Healthy Livers

Wang, Y.-X.; Deng, M.; Li, Y.; Huang, H.; Leung, J. C. S.; Chen, W.; Lu, P.-X.

10.1101/138958 — biophysics — Posted on 2017-05-25

277 Modelling dropouts for feature selection in scRNASeq experiments

Andrews, T. S.; Hemberg, M.

10.1101/065094 — bioinformatics — Posted on 2017-05-25

278 Breakdown Of Modularity In Complex Networks

Valverde, S.

10.1101/142174 — systems biology — Posted on 2017-05-25

279 A mixture of sparse coding models explaining properties of face neurons related to holistic and parts-based processing

Hosoya, H.; Hyvarinen, A.

10.1101/086637 — neuroscience — Posted on 2017-05-25

280 Human Resting-State Electrophysiological Networks In The Alpha Frequency Band: Evidence From Magnetoencephalographic Source Imaging

Hindriks, R.; Micheli, C.; Mantini, D.; Deco, G.

10.1101/142091 — neuroscience — Posted on 2017-05-25

281 Reconfiguration Of Dominant Coupling Modes In Mild Traumatic Brain Injury Mediated By δ-Band Activity: A Resting State MEG Study

Antonakakis, M.; Dimitriadis, S. I.; Zervakis, M.; Papanicolaou, A. C.; Zouridakis, G.

10.1101/142117 — neuroscience — Posted on 2017-05-25

282 Use Of RetroNectin In Studies Requiring In Vitro HIV Infection Of Human Hematopoietic Stem/Progenitor Cells

Tsukamoto, T.; Okada, S.

10.1101/142075 — microbiology — Posted on 2017-05-25

283 Genome-Wide Analysis Of Repetitive Elements Associated With Gene Regulation

Zeng, L.; Pederson, S.; Cao, D. F.; Qu, Z. P.; Hu, Z. Q.; Adelson, D.; Wei, C. C.

10.1101/142018 — genomics — Posted on 2017-05-25

284 Evaluation Of Chromatin Accessibility In Prefrontal Cortex Of Schizophrenia Cases And Controls

Bryois, J.; Garrett, M. E.; Song, L.; Safi, A.; Giusti-Rodriguez, P.; Johnson, G. D.; Demur, A. B.; Fullard, J. F.; Roussos, P.; Sklar, P.; Akbarian, S.; Haroutunian, V.; Stockmeier, C. A.; Wray, G. A.; White, K. P.; Liu, C.; Reddy, T. E.; Ashley-Koch, A.; Sullivan, P. F.; Crawford, G. E.

10.1101/141986 — genomics — Posted on 2017-05-25

285 The Nuclear And Mitochondrial Genomes Of The Facultatively Eusocial Orchid Bee Euglossa dilemma

Brand, P.; Saleh, N.; Pan, H.; Li, C.; Kapheim, K.; Ramirez, S.

10.1101/123687 — genomics — Posted on 2017-05-25

286 Static And Dynamic DNA Loops Form AP-1 Bound Activation Hubs During Macrophage Development

Phanstiel, D. H.; Van Bortle, K.; Spacek, D. V.; Hess, G. T.; Saad Shamim, M.; Machol, I.; Love, M. I.; Lieberman Aiden, E.; Bassik, M. C.; Snyder, M. P.

10.1101/142026 — genomics — Posted on 2017-05-25

287 Sepsis Increases Perioperative Metastases In A Murine Model

Tai, L.-H.; Ananth, A. A.; Seth, R.; Alkayyal, A.; Zhang, J.; de Souza, C. T.; Staibano, P.; Kennedy, M. A.; Auer, R. C.

10.1101/142083 — cancer biology — Posted on 2017-05-25

288 Distinct Pattern Of Epigenetic DNA Modification In Leukocytes From Patients With Colorectal Carcinoma And Individuals With Precancerous Conditions, Benign Adenoma And Inflammatory Bowel Disease; A Link To Oxidative Stress

Starczak, M.; Zarakowska, E.; Modrzejewska, M.; Dziaman, T.; Szpila, A.; Linowiecka, K.; Guz, J.; Szpotan, J.; Gawrołski, M.; Labejszo, A.; Banaszkiewicz, Z.; Klopocka, M.; Foksinski, M.; Gackowski, D.; Olinski, R.

10.1101/141903 — cancer biology — Posted on 2017-05-25

289 Sequential Eviction Of Crowded Nucleoprotein Complexes By The RecBCD Molecular Motor

Terakawa, T.; Redding, S.; Silverstein, T. D.; Greene, E. C.

10.1101/142224 — biophysics — Posted on 2017-05-25

290 Achieving Better Than 3 A Resolution By Single Particle Cryo-EM At 200 keV

Herzik, M. A.; Wu, M.; Lander, G. C.

10.1101/141994 — biophysics — Posted on 2017-05-25

291 Linclust: clustering billions of protein sequences per day on a single server

Steinegger, M.; Soding, J.

10.1101/104034 — bioinformatics — Posted on 2017-05-25

292 A method to assess significant differences in RNA expression among specific gene groups

He, M.; Liu, P.; Lawrence-Dill, C. J.

10.1101/136143 — bioinformatics — Posted on 2017-05-25

293 Recombinant expression in E. coli of human FGFR2 with its transmembrane and extracellular domains

Bajinting, A.; Ng, H. L.

10.1101/113142 — biochemistry — Posted on 2017-05-25

294 Discovery of a shortened version of SecA (SecAN) that conceivably functions as a protein-conducting channel

Jin, F.; Chang, Z.

10.1101/121335 — biochemistry — Posted on 2017-05-25

295 Creation of distal enhancers defines human-specific features of interphase chromatin architecture in embryonic stem cells

Glinsky, G.

10.1101/022913 — genomics — Posted on 2017-05-25

296 StereoGene: Rapid Estimation of Genomewide Correlation of Continuous or Interval Feature Data

Stavrovskaya, E. D.; Niranjan, T.; Fertig, E. J.; Wheelan, S. J.; Favorov, A.; Mironov, A.

10.1101/059584 — bioinformatics — Posted on 2017-05-25

297 Characterizing The Structure-Function Relationship Of A Naturally-Occurring RNA Thermometer

Meyer, S.; Lucks, J.

10.1101/142141 — biochemistry — Posted on 2017-05-25

298 Root Interactions And Plant Growth In A Tomato/Potato Onion Intercropping System Under Different Phosphorus Levels

Yu, H.; Chen, S.; Zhou, X.; Wu, F.

10.1101/142067 — ecology — Posted on 2017-05-25

299 Single molecule mechanics reveal Kif15 as an active molecular ratchet with acute strain sensitivity

McHugh, T.; Drechsler, H.; McAinsh, A. D.; Carter, N. J.; Cross, R. A.

10.1101/141978 — cell biology — Posted on 2017-05-25

300 Cross-Cultural Effects On Ensemble Coding Of Emotion In Facial Crowds

Im, H. Y.; Chong, S. C.; Sun, J.; Steiner, T. G.; Albohn, D. N.; Adams, R. B.; Kveraga, K.

10.1101/141861 — neuroscience — Posted on 2017-05-24

301 Learning Fast And Slow: Deviations From The Matching Law Can Reflect An Optimal Strategy Under Uncertainty

Iigaya, K.; Ahmadian, Y.; Sugrue, L.; Corrado, G.; Loewenstein, Y.; Newsome, W. T.; Fusi, S.

10.1101/141309 — neuroscience — Posted on 2017-05-24

302 The Nucleoid Occlusion Protein SlmA Is A Direct Transcriptional Activator Of Chitobiose Utilization In Vibrio cholerae

Klancher, C. A.; Hayes, C. A.; Dalia, A. B.

10.1101/141812 — microbiology — Posted on 2017-05-24

303 Rare non-coding variants are associated with plasma lipid traits in a founder population

Igartua, C.; Mozaffari, S. V.; Nicolae, D.; Ober, C.

10.1101/141960 — genetics — Posted on 2017-05-24

304 Drift-Induced Selection Between Male And Female Heterogamety

Veller, C.; Muralidhar, P.; Constable, G. W. A.; Nowak, M. A.

10.1101/141929 — evolutionary biology — Posted on 2017-05-24

305 HIVs Feedback Circuit Breaks The Fundamental Limit On Noise Suppression To Stabilize Fate

Wen, W. Y.; Ingerman, E.; Hansen, M. M. K.; Razooky, B. S.; Dar, R. D.; Chin, C.; Simpson, M.; Weinberger, L. S.

10.1101/141390 — cell biology — Posted on 2017-05-24

306 A kinetically-driven free exchange mechanism of EmrE antiport sacrifices coupling efficiency in favor of promiscuity

Robinson, A. E.; Thomas, N. E.; Morrison, E. A.; Balthazor, B.; Henzler-Wildman, K. A.

10.1101/141937 — biophysics — Posted on 2017-05-24

307 The Structure Of Small Beta Barrels

Youkharibache, P.; Veretnik, S.; Li, Q.; Bourne, P. E.

10.1101/140376 — bioinformatics — Posted on 2017-05-24

308 Sepsis Reconsidered: Identifying Novel Metrics For Behavioral Landscape Characterization With A High-Performance Computing Implementation Of An Agent-Based Model

Cockrell, C.; An, G.

10.1101/141804 — systems biology — Posted on 2017-05-24

309 Phenotype prediction in an Escherichia coli strain panel

Galardini, M.; Koumoutsi, A.; Herrera-Dominguez, L.; Cordero Varela, J. A.; Telzerow, A.; Wagih, O.; Wartel, M.; Clermont, O.; Denamur, E.; Typas, A.; Beltrao, P.

10.1101/141879 — systems biology — Posted on 2017-05-24

310 Anxiety Modulates Perception Of Facial Fear In A Pathway-Specific, Lateralized, Manner

Im, H. Y.; Adams, R. B.; Boshyan, J.; Ward, N.; Cushing, C. A.; Kveraga, K.

10.1101/141838 — neuroscience — Posted on 2017-05-24

311 Distributed Rhythm Generators Underlie Caenorhabditis elegans Forward Locomotion

Fouad, A. D.; Teng, S.; Mark, J. R.; Liu, A.; Ji, H.; Cornblath, E.; Guan, A.; Zhen, M.; Fang-Yen, C.

10.1101/141911 — neuroscience — Posted on 2017-05-24

312 De novo indels within introns contribute to ASD incidence

Munoz, A.; Yamrom, B.; Lee, Y.-h.; Andrews, P.; Marks, S.; Lin, K.-T.; Wang, Z.; Krainer, A. R.; Darnell, R. B.; Wigler, M.; Iossifov, I.

10.1101/137471 — genetics — Posted on 2017-05-24

313 CD95L mRNA And CD95L Derived si- and shRNAs Kill Cancer Cells Through An RNAi Mechanism By Targeting Survival Genes

Putzbach, W.; Gao, Q.; Patel, M.; Hadji, A.; van Dongen, S.; Haluck-Kangas, A.; Bartom, E.; Stults, A.; Qadir, A.; Kim, K.-Y.; Hafner, M.; Zhao, J.; Murmann, A.; Peter, M.

10.1101/141952 — cancer biology — Posted on 2017-05-24

314 TiSAn: Tissue Specific Variant Annotation

Vervier, K.; Michaelson, J. J.

10.1101/141408 — bioinformatics — Posted on 2017-05-24

315 Inferential Pitfalls In Decoding Neural Representations

Popov, V.; Ostarek, M.; Tenison, C.

10.1101/141283 — neuroscience — Posted on 2017-05-24

316 Platelet phosphorylated TDP-43: An exploratory study for a peripheral surrogate biomarker development for Alzheimer’s disease

Wilhite, R.; Sage, J. M.; Bouzid, A.; Primavera, T.; Agbas, A.

10.1101/132837 — neuroscience — Posted on 2017-05-24

317 Inter-individual Recovery Of The Microbiota And Metabolome Over Time Following Fecal Microbiota Transplantation In Patients With Recurrent Clostridium difficile Infection

Seekatz, A.; Theriot, C. M.; Rao, K.; Chang, Y.-M.; Freeman, A. E.; Kao, J. Y.; Young, V. B.

10.1101/141846 — microbiology — Posted on 2017-05-24

318 Genetic Identification Of A Common Collagen Disease In Puerto Ricans Via Identity-By-Descent Mapping In A Health System

Belbin, G. M.; Odgis, J.; Sorokin, E. P.; Yee, M.-C.; Kohli, S.; Glicksberg, B. S.; Gignoux, C. R.; Wojcik, G. L.; Van Vleck, T.; Jeff, J. M.; Linderman, M.; Schurmann, C.; Ruderfer, D.; Cai, X.; Merkelson, A.; Justice, A. E.; Young, K. L.; Graff, M.; North, K. E.; Peter, U.; James, R.; Hindorff, L.; Kornreich, R.; Edelmann, L.; Gottesman, O.; Stahl, E. E. A.; Cho, J. H.; Loos, R. J. F.; Bottinger, E. P.; Nadkarni, G. N.; Abul-Husn, N. S.; Kenny, E. E.

10.1101/141820 — genomics — Posted on 2017-05-24

319 The Complete Connectome Of A Learning And Memory Center In An Insect Brain

Eichler, K.; Litwin-Kumar, A.; Li, F.; Park, Y.; Andrade, I.; Schneider-Mizell, C. M.; Saumweber, T.; Huser, A.; Eschbach, C.; Gerber, B.; Fetter, R. D.; Truman, J. W.; Priebe, C. E.; Abbott, L. F.; Thum, A. S.; Zlatic, M.; Cardona, A.

10.1101/141762 — neuroscience — Posted on 2017-05-24

320 High lumenal chloride in the lysosome is critical for lysosome function.

Krishnan, Y.; Chakraborty, K.; Leung, K.

10.1101/141788 — cell biology — Posted on 2017-05-24

321 Filament Rigidity And Connectivity Tune The Deformation Modes Of Active Biopolymer Networks

Stam, S.; Freedman, S. L.; Banerjee, S.; Weirich, K. L.; Dinner, A. R.; Gardel, M. L.

10.1101/141796 — biophysics — Posted on 2017-05-24

322 Serial Crystallography with Multi-stage Merging of 1000’s of Images

Bernstein, H. J.; Andrews, L. C.; Foadi, J.; Fuchs, M. R.; Jakoncic, J.; McSweeney, S.; Schneider, D. K.; Shi, W.; Skinner, J.; Soares, A.; Yamada, Y.

10.1101/141770 — bioinformatics — Posted on 2017-05-24

323 Ensemble coding of crowd emotion: Differential hemispheric and visual stream contributions

Im, H. Y.; Albohn, D. N.; Steiner, T. G.; Cushing, C.; Adams, R. B.; Kveraga, K.

10.1101/101527 — neuroscience — Posted on 2017-05-24

324 Swapping Of Transmembrane Domains In The Epithelial Calcium Channel TRPV6

Singh, A. K.; Saotome, K.; Sobolevsky, A. I.

10.1101/141523 — biochemistry — Posted on 2017-05-24

325 Estimate of disease heritability using 7.4 million familial relationships inferred from electronic health records

Polubriaginof, F.; Vanguri, R.; Quinnies, K.; Belbin, G.; Yahi, A.; Salmasian, H.; Lorberbaum, T.; Nwankwo, V.; Li, L.; Shervey, M.; Glowe, P.; Ionita-Laza, I.; Simmerling, M.; Hripcsak, G.; Bakken, S.; Goldstein, D.; Kiryluk, K.; Kenny, E.; Dudley, J.; Vawdrey, D. K.; Tatonetti, N. P.

10.1101/066068 — genetics — Posted on 2017-05-24

326 The Peach RGF/GLV Signalling Peptide pCTG134 Is Involved In A Regulatory Circuit That Sustains Auxin And Ethylene Actions

Busatto, N.; Salvagnin, U.; Resentini, F.; Quaresimin, S.; Navazio, L.; Marin, O.; Pellegrini, M.; Costa, F.; Mierke, D. F.; Trainotti, L.

10.1101/141705 — plant biology — Posted on 2017-05-24

327 Genome-wide sequence and expression analysis of the NAC transcription factor family in polyploid wheat

Borrill, P.; Harrington, S. A.; Uauy, C.

10.1101/141747 — plant biology — Posted on 2017-05-24

328 Inferential Pitfalls In Decoding Neural Representations

Popov, V.; Ostarek, M.; Tenison, C.

10.1101/141283 — neuroscience — Posted on 2017-05-24

329 General Environmental Heterogeneity As The Explanation Of Sexuality? Comparative Study Shows That Ancient Asexual Taxa Are Associated With Both Biotically And Abiotically Homogeneous Environments

Toman, J.; Flegr, J.

10.1101/141317 — evolutionary biology — Posted on 2017-05-24

330 Genome-Wide SNP Discovery In Field And Laboratory Colonies Of Australian Plutella Species

Perry, K. D.; Pederson, S. M.; Baxter, S. W.

10.1101/141606 — ecology — Posted on 2017-05-24

331 PIQED: Automated Identification And Quantification Of Protein Modifications From DIA-MS Data

Meyer, J. G.; Mukkamalla, S.; Steen, H.; Nesvizhskii, A. I.; Gibson, B. W.; Schilling, B.

10.1101/141382 — systems biology — Posted on 2017-05-24

332 The Proteolytic Landscape Of An Arabidopsis Separase-Deficient Mutant Reveals Novel Substrates Associated With Plant Development

Liu, C.; Stael, S.; Gevaert, K.; Van Breusegem, F.; Bozhkov, P.; Moschou, P.

10.1101/140962 — plant biology — Posted on 2017-05-24

333 Bayesian Selection Of Grammar Productions For The Language Of Thought

Romano, S.; Salles, A.; Amalric, M.; Dehaene, S.; Sigman, M.; Figueria, S.

10.1101/141358 — neuroscience — Posted on 2017-05-24

334 Functional Connectivity Between Somatosensory and Motor Brain Areas Predicts Individual Differences in Motor Learning by Observing

McGregor, H. R.; Gribble, P. L.

10.1101/110924 — neuroscience — Posted on 2017-05-24

335 Learning Fast And Slow: Deviations From The Matching Law Can Reflect An Optimal Strategy Under Uncertainty

IIgaya, K.; Ahmadian, Y.; Sugrue, L.; Corrado, G.; Loewenstein, Y.; Newsome, W. T.; Fusi, S.

10.1101/141309 — neuroscience — Posted on 2017-05-24

336 Multisite Generalizability Of Schizophrenia Diagnosis Classification Based On Functional Brain Connectivity

Orban, P.; Dansereau, C.; Desbois, L.; Mongeau-Perusse, V.; Giguere, C.-E.; Nguyen, H.; Mendrek, A.; Stip, E.; Bellec, P.

10.1101/141192 — neuroscience — Posted on 2017-05-24

337 Alpha Oscillations During Incidental Encoding Predict Subsequent Memory For New "Foil" Information

Vogelsang, D. A.; Gruber, M.; Bergstrom, Z. M.; Ranganath, C.; Simons, J. S.

10.1101/141648 — neuroscience — Posted on 2017-05-24

338 Physical And Mental Health Status In Toxoplasma-Infected Women Before And Three Years After They Learn About Their Infection: The Role Of Rh Factor

Sebankova, B.; Flegr, J.

10.1101/141580 — neuroscience — Posted on 2017-05-24

339 Rob And MarA Alter Susceptibility Of Escherichia coli To Antibiotics In Presence Of Salicylate

Jain, K.; Saini, S.

10.1101/141671 — microbiology — Posted on 2017-05-24

340 Overexpression Of Hypoxia-Inducible Factor 1 Alpha Improves Immunomodulation By Dental Mesenchymal Stem Cells

Martinez, V. G.; Ontoria-Oviedo, I.; Ricardo, C. P.; Harding, S. E.; Sacedon, R.; Varas, A.; Zapata, A.; Sepulveda, P.; Vicente, A.

10.1101/141218 — immunology — Posted on 2017-05-24

341 Natural mismatch repair mutations mediate phenotypic diversity and drug resistance in Cryptococcus deuterogattii

Billmyre, R. B.; Clancey, S. A.; Heitman, J.

10.1101/141507 — genomics — Posted on 2017-05-24

342 Comparative Huntington And Parkinson Disease mRNA Analysis Reveals Common Inflammatory Processes

Labadorf, A.; Choi, S. H.; Myers, R. H.

10.1101/139451 — genomics — Posted on 2017-05-24

343 Estimating Degree Of Polygenicity, Causal Effect Size Variance, And Confounding Bias In GWAS Summary Statistics

Holland, D.; Fan, C.-C.; Frei, O.; Shadrin, A. A.; Smeland, O. B.; Sundar, V. S.; ENIGMA, ; Andreassen, O. A.; Dale, A. M.

10.1101/133132 — genomics — Posted on 2017-05-24

344 Biomod2EZ - An R script suite for visualizing projected niche model ensembles and reporting statistical results.

Sesink Clee, P. R.; Woloszynek, S.; Gonder, M. K.

10.1101/140855 — ecology — Posted on 2017-05-24

345 Coordinated Shifts In Allocation Among Reproductive Tissues Across 14 Coexisting Plant Species

Wenk, E. H.; Abramowicz, K.; Westoby, M.; Falster, D. S.

10.1101/141473 — ecology — Posted on 2017-05-24

346 scImpute: Accurate And Robust Imputation For Single Cell RNA-Seq Data

Li, W. V.; Li, J. J.

10.1101/141598 — bioinformatics — Posted on 2017-05-24

347 Building Applications For Interactive Data Exploration In Systems Biology

Fjukstad, B.; Dumeaux, V.; Olsen, K. S.; Hallett, M.; Lund, E.; Bongo, L.

10.1101/141630 — bioinformatics — Posted on 2017-05-24

348 Cancer Progression Models And Fitness Landscapes: A Many-To-Many Relationship

Diaz-Uriarte, R.

10.1101/141465 — bioinformatics — Posted on 2017-05-24

349 Robust Estimation Of Hi-C Contact Matrices Using Fused Lasso Reveals Preferential Insulation Of Super-Enhancers By Strong TAD Boundaries

Gong, Y.; Lazaris, C.; Lozano, A.; Kambadur, P.; Ntziachristos, P.; Aifantis, I.; Tsirigos, A.

10.1101/141481 — bioinformatics — Posted on 2017-05-24

350 Matriarchy And Prehistory: A Statistical Method For Testing An Old Theory

d'Huy, J.

10.1101/141374 — bioinformatics — Posted on 2017-05-24

351 Potential Mechanisms Linking SIRT Activity And Hypoxic 2-Hydroxyglutarate Generation: No Role For Direct Enzyme (De)acetylation

Nadtochiy, S.; Wang, Y. T.; Zhang, J.; Nehrke, K.; Schafer, X.; Welle, K.; Ghaemmaghami, S.; Munger, J.; Brookes, P.

10.1101/141416 — biochemistry — Posted on 2017-05-24

352 Mutations In Disordered Regions Cause Disease By Creating Endocytosis Motifs

Meyer, K.; Uyar, B.; Kirchner, M.; Cheng, J.; Akalin, A.; Selbach, M.

10.1101/141622 — biochemistry — Posted on 2017-05-24

353 Translational Repression Of The Drosophila nanos mRNA Involves The RNA Helicase Belle And RNA Coating By Me31B And Trailer hitch

Gotze, M.; Dufourt, J.; Ihling, C.; Rammelt, C.; Pierson, S.; Sambrani, N.; Temme, C.; Sinz, A.; Simonelig, M.; Wahle, E.

10.1101/141655 — biochemistry — Posted on 2017-05-24

354 Profiling metabolic flux modes by enzyme cost reveals variable trade-offs between growth and yield in Escherichia coli.

Wortel, M. T.; Noor, E.; Ferris, M.; Bruggeman, F. J.; Liebermeister, W.

10.1101/111161 — systems biology — Posted on 2017-05-24

355 MitoCore: A Curated Constraint-Based Model For Simulating Human Central Metabolism

Smith, A. C.; Eyassu, F.; Mazat, J.-P.; Robinson, A. J.

10.1101/141101 — systems biology — Posted on 2017-05-24

356 Shared neural basis for experiencing the beauty of human faces and visual art: Evidence from a meta-analyses of fMRI studies

Hu, C.-P.; Huang, Y.; Eickhoff, S. B.; Peng, K.; Sui, J.

10.1101/081539 — neuroscience — Posted on 2017-05-24

357 Educational attainment and personality are genetically intertwined

Mottus, R.; Realo, A.; Vainik, U.; Allik, J.; Esko, T.

10.1101/078014 — genetics — Posted on 2017-05-24

358 Pleiotropic Chemoreceptors Facilitate The Maintenance Of Signal-Receptor Coupling In Pheromonal Communication

Zelle, K.; Liang, X.; Ben-Shahar, Y.

10.1101/124305 — genetics — Posted on 2017-05-24

359 Astral microtubule dynamics regulate anaphaseoscillation onset and set a robust final positionfor the Caenorhabditis elegans zygote spindle.

Bouvrais, H.; Chesneau, L.; Pastezeur, S.; Delattre, M.; Pecreaux, J.

10.1101/103937 — biophysics — Posted on 2017-05-24

360 FiberNET: An ensemble deep learning framework for clustering white matter fibers

Gupta, V.; Thomopoulos, S. I.; Rashid, F. M.; Thompson, P. M.

10.1101/141036 — bioinformatics — Posted on 2017-05-24

361 Image Memorability In The Eye Of The Beholder: Tracking The Decay Of Visual Scene Representations

Le-Hoa Vo, M.; Bylinskii, Z.; Oliva, A.

10.1101/141044 — neuroscience — Posted on 2017-05-24

362 Efficiency Of Genomic Prediction Of Non-Assessed Single Crosses

Viana, J. M. S.; Pereira, H. D.; Mundim, G. B.; Piepho, H.-P.; Silva, F. F.

10.1101/141440 — genetics — Posted on 2017-05-24

363 Extended Synaptotagmin Is A Presynaptic ER Ca2+ Sensor That Promotes Neurotransmission And Synaptic Growth In Drosophila

Kikuma, K.; Kim, D.; Sutter, D.; Li, X.; Dickman, D.

10.1101/141333 — neuroscience — Posted on 2017-05-23

364 Drosophila CaV2 Channels Harboring Human Migraine Mutations Cause Synapse Hyperexcitability That Can Be Suppressed By Inhibition Of A Ca2+ Store Release Pathway

Brusich, D. J.; Spring, A. M.; James, T. D.; Helms, T. H.; Frank, C. A.

10.1101/141366 — neuroscience — Posted on 2017-05-23

365 An Efficient CRISPR Protocol For Generating Conditional And Knock-In Mice Using Long Single-Stranded DNA Donors

Miura, H.; Quadros, R. M.; Gurumurthy, C. B.; Ohtsuka, M.

10.1101/141424 — genomics — Posted on 2017-05-23

366 Characterization Of Beta Tubulin Isotypes During Foam Cell Formation

Torres, A.; Contreras-Shannon, V.

10.1101/141457 — cell biology — Posted on 2017-05-23

367 Disruption Of Ankyrin B And Caveolin-1 Interaction Sites Alters Na+,K+-ATPase Lateral Diffusion In HEK293 Cell Plasma Membranes

Junghans, C.; Vukojevic, V.; Tavraz, N. N.; Maksimov, E. G.; Zuschratter, W.; Schmitt, F.-J.; Friedrich, T.

10.1101/141291 — biophysics — Posted on 2017-05-23

368 Synthesis Of Extracellular Stable Gold Nanoparticles By Cupriavidus metallidurans CH34 Cells

Montero-Silva, F.

10.1101/139949 — biochemistry — Posted on 2017-05-23

369 StateHub-StatePaintR: rapid and reproducible chromatin state evaluation for custom genome annotation.

Coetzee, S. G.; Ramjan, Z.; Dinh, H. Q.; Berman, B. P.; Hazelett, D. J.

10.1101/127720 — bioinformatics — Posted on 2017-05-23

370 FiberNET: An ensemble deep learning framework for clustering white matter fibers

Gupta, V.; Thomopoulos, S. I.; Rashid, F. M.; Thompson, P. M.

10.1101/141036 — bioinformatics — Posted on 2017-05-23

371 Ten simple rules for structuring papers

Kording, K. P.; Mensh, B.

10.1101/088278 — scientific communication and education — Posted on 2017-05-23

372 Integrating discovery-driven proteomics and selected reaction monitoring to develop a non-invasive assay for geoduck reproductive maturation

Timmins-Schiffman, E. B.; Crandall, G. A.; Vadopalas, B.; Riffle, M. E.; Nunn, B. L.; Roberts, S. B.

10.1101/094615 — physiology — Posted on 2017-05-23

373 Potassium channels contribute to activity-dependent scaling of dendritic inhibition

Chang, J. T.; Higley, M. J.

10.1101/098889 — neuroscience — Posted on 2017-05-23

374 Extensive Horizontal Gene Transfer in Cheese-Associated Bacteria

Bonham, K. S.; Wolfe, B. E.; Dutton, R. J.

10.1101/079137 — microbiology — Posted on 2017-05-23

375 Development of a high-density, ~2M SNP genotyping array and 670k SNP imputation array for the domestic horse

Schaefer, R. J.; Schubert, M.; Bailey, E.; Bannasch, D. L.; Barrey, E.; Kahila Bar-Gal, G.; Brem, G.; Brooks, S. A.; Distl, O.; Fries, R.; Finno, C. J.; Gerber, V.; Haase, B.; Jagannathan, V.; Kalbfleisch, T.; Leeb, T.; Lindgren, G.; Susana Lopes, M.; Mach, N.; da Camara Machado, A.; MacLeod, J. N.; McCoy, A.; Metzger, J.; Penedo, C.; Polani, S.; Rieder, S.; Tammen, I.; Tetens, J.; Thaller, G.; Verini-Supplizi, A.; Wade, C. M.; Wallner, B.; Orlando, L.; Mickelson, J. R.; McCue, M. E.

10.1101/112979 — genomics — Posted on 2017-05-23

376 Detecting Long-term Balancing Selection using Allele Frequency Correlation

Siewert, K. M.; Voight, B. F.

10.1101/112870 — evolutionary biology — Posted on 2017-05-23

377 Association Mapping From Sequencing Reads Using K-mers

Rahman, A.; Hallgrimsdottir, I.; Eisen, M. B.; Pachter, L.

10.1101/141267 — bioinformatics — Posted on 2017-05-23

378 Curve Selection For Predicting Breast Cancer Metastasis From Prospective Gene Expression In Blood

Holsbo, E.; Perduca, V.; Bongo, L. A.; Lund, E.; Birmele, E.

10.1101/141325 — bioinformatics — Posted on 2017-05-23

379 Eye-movement reinstatement and neural reactivation during mental imagery

Bone, M. B.; St-Laurent, M.; Dang, C.; McQuiggan, D. A.; Ryan, J. D.; Buchsbaum, B. R.

10.1101/107953 — neuroscience — Posted on 2017-05-23

380 Adaptive pathways of coral populations on the Great Barrier Reef

Matz, M. V.; Treml, E. A.; Aglyamova, G. V.; van Oppen, M. J. H.; Bay, L. K.

10.1101/114173 — evolutionary biology — Posted on 2017-05-23

381 High-content protein localization screening in vivo reveals novel regulators of multiciliated cell development and function

Tu, F.; Sedzinski, J.; Ma, Y.; Marcotte, E.; Wallingford, J.

10.1101/141234 — cell biology — Posted on 2017-05-23

382 Dynamic blue light-inducible T7 RNA polymerases (Opto-T7RNAPs) for precise spatiotemporal gene expression control

Baumschlager, A.; Aoki, S. K.; Khammash, M.

10.1101/140871 — synthetic biology — Posted on 2017-05-23

383 Realizing "Integral Control" In Living Cells: How To Overcome Leaky Integration Due To Dilution?

Qian, Y.; Del Vecchio, D.

10.1101/141051 — synthetic biology — Posted on 2017-05-23

384 Sequence Specific Modeling of E. coli Cell-Free Protein Synthesis

Vilkhovoy, M.; Horvath, N.; Shih, C.-h.; Wayman, J.; Calhoun, K.; Swartz, J.; Varner, J.

10.1101/139774 — synthetic biology — Posted on 2017-05-23

385 Spatial organization of the mouse auditory cortex to sound dynamics revealed using automated image segmentation

Liu, J.; Whiteway, M. R.; Butts, D. A.; Kanold, P. O.

10.1101/139659 — neuroscience — Posted on 2017-05-23

386 Low-Level Carbon Monoxide Exposure Affects BOLD FMRI

Bendell, C.; Moosavi, S. H.; Herigstad, M.

10.1101/141093 — neuroscience — Posted on 2017-05-23

387 Revealing The Distribution Of Transmembrane Currents Along The Dendritic Tree Of A Neuron With Known Morphology From Extracellular Recordings

Cserpan, D.; Meszena, D.; Wittner, L.; Toth, K.; Ulbert, I.; Somogyvari, Z.; Wojcik, D.

10.1101/141069 — neuroscience — Posted on 2017-05-23

388 Open Hardware For Neuro-Prosthesis Research: A Study About A Closed-Loop Multi-Channel System For Electrical Surface Stimulations And Measurements

Rotermund, D.; Ernst, U. A.; Pawelzik, K. R.

10.1101/141184 — neuroscience — Posted on 2017-05-23

389 Multisite Generalizability Of Schizophrenia Diagnosis Classification Based On Functional Brain Connectivity

Orban, P.; Dansereau, C.; Desbois, L.; Mongeau-Perusse, V.; Giguere, C.-E.; Nguyen, H.; Mendrek, A.; Stip, E.; Bellec, P.

10.1101/141192 — neuroscience — Posted on 2017-05-23

390 IGoR: A Tool For High-Throughput Immune Repertoire Analysis

Marcou, Q.; Mora, T.; Walczak, A. M.

10.1101/141143 — immunology — Posted on 2017-05-23

391 SUMO E3 ligase Mms21 prevents spontaneous DNA damage induced genome rearrangements

Zhou, H.; Kolodner, R.; Putnam, C. D.; Liang, J.; Li, B.-z.; Tan, A. P.

10.1101/141028 — genetics — Posted on 2017-05-23

392 There And Back Again -- Unraveling Mechanisms Of Bacterial Biogeography In The North Pacific Subtropical Gyre To And From Station ALOHA

Lindh, M. V.

10.1101/141085 — ecology — Posted on 2017-05-23

393 Defining Marine Microbial Biomes From Environmental And Dispersal Filtered Metapopulations

Lindh, M. V.

10.1101/141077 — ecology — Posted on 2017-05-23

394 Optic Fissure Margin Morphogenesis Sets The Stage For Consecutive Optic Fissure Fusion, Pioneered By A Distinct Subset Of Margin Cells Using A Hyaloid Vessel As Scaffold

Eckert, P.; Schuetz, L.; Wittbrodt, J.; Heermann, S.

10.1101/141275 — developmental biology — Posted on 2017-05-23

395 Postmitotic Nuclear Pore Assembly Proceeds By Radial Dilation Of Small ER Membrane Openings

Otsuka, S.; Steyer, A. M.; Schorb, M.; Heriche, J.-K.; Hossain, M. J.; Sethi, S.; Schwab, Y.; Beck, M.; Ellenberg, J.

10.1101/141150 — cell biology — Posted on 2017-05-23

396 Molecular Dynamics Simulations Of Membrane Deformation Induced By The Amphiphilic Helices Of Epsin, Sar1p And Arf1

Li, Z.-L.; Ding, H.-M.

10.1101/140970 — biophysics — Posted on 2017-05-23

397 MATAM: Reconstruction Of Phylogenetic Marker Genes From Short Sequencing Reads In Metagenomes

Pericard, P.; Dufresne, Y.; Blanquart, S.; Touzet, H.

10.1101/141176 — bioinformatics — Posted on 2017-05-23

398 Inducing Chondrogenesis In MSC/Chondrocyte Co-Cultures Using Exogenous TGF-β: A Mathematical Model

Chen, M.; Whiteley, J.; Please, C.; Schwab, A.; Ehlicke, F.; Waters, S.; Byrne, H.

10.1101/141119 — bioengineering — Posted on 2017-05-23

399 MitoCore: A Curated Constraint-Based Model For Simulating Human Central Metabolism

Smith, A. C.; Eyassu, F.; Mazat, J.-P.; Robinson, A.

10.1101/141101 — systems biology — Posted on 2017-05-23

400 Damaging Mutations are Associated with Diminished Motor Skills and IQ in Children on the Autism Spectrum

Buja, A.; Volfovsky, N.; Krieger, A.; Lord, C.; Lash, A.; Wigler, M.; Iossifov, I.

10.1101/141200 — genetics — Posted on 2017-05-23

401 Leg Length, Skull Circumference, And The Incidence Of Dementia In Latin America And China; A 10/66 Population-Based Cohort Study

Prince, M. J.; Acosta, D.; Guerra, M.; Huang, Y.; Jimenez-Velazquez, I. Z.; Llibre Rodriguez, J. J.; Salas, A.; Sosa, A. L.; Dewey, M. E.; Guerchet, M. M.; Liu, Z.; Llibre Guerra, J. J.; Prina, M. A.

10.1101/140129 — epidemiology — Posted on 2017-05-23

402 A Dimensional Approach To Assessing Psychiatric Risk In Adults Born Very Preterm

Kroll, J.; Froudist-Walsh, S.; Brittain, P. J.; Tseng, C.-E. J.; Karolis, V.; Murray, R. M.; Nosarti, C.

10.1101/140772 — developmental biology — Posted on 2017-05-23

403 On growth and form of the distal air exchange surfaces within the lung.

Warburton, D.; Wigfall, C.; Pollack, H.; Koos, D.; Al Alam, D.; Turcatel, G.; Shi, W.; Fraser, S. E.; Moats, R.

10.1101/141168 — developmental biology — Posted on 2017-05-23

404 Effective connectivity inferred from fMRI transition dynamics during movie viewing points to a balanced reconfiguration of cortical interactions

Gilson, M.; Deco, G.; Friston, K.; Hagmann, P.; Mantini, D.; Betti, V.; Romani, G. L.; Corbetta, M.

10.1101/110015 — neuroscience — Posted on 2017-05-23

405 Loss Of lrrk2 Impairs Cell Proliferation And Neuronal Regeneration In The Zebrafish Brain

Suzzi, S.; Ahrendt, R.; Hans, S.; Semenova, S. A.; Bilican, S.; Sayed, S.; Winkler, S.; Spiess, S.; Kaslin, J.; Panula, P.; Brand, M.

10.1101/140608 — neuroscience — Posted on 2017-05-23

406 UPS-indel: A Universal Positioning System For Indels

Hasan, M. S.; Wu, X.; Watson, L. T.; Li, Z.; Zhang, L.

10.1101/133553 — bioinformatics — Posted on 2017-05-23

407 Dorsal Anterior Cingulate-Midbrain Ensemble As A Reinforcement Meta-Learner

Silvetti, M.; Vassena, E.; Verguts, T.

10.1101/130195 — neuroscience — Posted on 2017-05-23

408 Light Amplification By Biofilm And Its Polarization Dependence

Ray, S.; Dasgupta, A. K.

10.1101/139741 — bioengineering — Posted on 2017-05-23

409 A common haplotype lowers PU.1 expression in myeloid cells and delays onset of Alzheimer’s disease

Huang, K.-l.; Marcora, E.; Pimenova, A.; Di Narzo, A.; Kapoor, M.; Jin, S. C.; Harari, O.; Bertelsen, S.; Fairfax, B.; Czajkowski, J.; Chouraki, V.; Grenier-Boley, B.; Bellenguez, C.; Deming, Y.; McKenzie, A.; Raj, T.; Renton, A.; Budde, J.; Smith, A.; Fitzpatrick, A.; Bis, J.; DeStefano, A.; Adams, H.; Ikram, M. A.; van der Lee, S.; Del-Aguila, J.; Fernandez, M.; Ibanez, L.; The International Genomics of Alzheimer's Project, ; The Alzheimer's Disease Neuroimaging Initiative, ; Sims, R.; Escott-Price, V.; Mayeux, R.; Haines, J.; Farrer, L.; Pericak-Vance, M.; Lambert, J. C.; van Duijn, C.; L

10.1101/110957 — neuroscience — Posted on 2017-05-23

410 Predicting Drug Resistance Evolution: Antimicrobial Peptides Vs. Antibiotics

Yu, G.; Baeder, D.; Regoes, R.; Rolff, J.

10.1101/138107 — evolutionary biology — Posted on 2017-05-23

411 Dynamic Current Clamp Experiments Define The Functional Roles Of IK1 And Ito,f In Human Induced Pluripotent Stem Cell Derived Cardiomyocytes

Marrus, S.; Springer, S.; Johnson, E.; Martinez, R.; Dranoff, E.; Mellor, R.; Yamada, K.

10.1101/135400 — cell biology — Posted on 2017-05-23

412 The Structure Of Small Beta Barrels

Youkharibache, P.; Veretnik, S.; Li, Q.; Bourne, P. E.

10.1101/140376 — bioinformatics — Posted on 2017-05-23

413 Bridging Computational Neuroscience and Machine Learning on Non-Stationary Multi-Armed Bandits

Velentzas, G.; Tzafestas, C.; Khamassi, M.

10.1101/117598 — animal behavior and cognition — Posted on 2017-05-23

414 Sensitivity of Neurons in the Middle Temporal Area of Marmoset Monkeys to Random Dot Motion

Chaplin, T. A.; Allitt, B. J.; Hagan, M. A.; Price, N. S. C.; Rajan, R.; Rosa, M. G. P.; Lui, L. L.

10.1101/104117 — neuroscience — Posted on 2017-05-23

415 Outer membrane lipid homeostasis via retrograde phospholipid transport in Escherichia coli

Shrivastava, R.; Jiang, X.; Chng, S. S.

10.1101/109884 — microbiology — Posted on 2017-05-23

416 Inferring Functional Neural Connectivity With Deep Residual Convolutional Networks

Dunn, T.; Koo, P. K.

10.1101/141010 — neuroscience — Posted on 2017-05-22

417 Alterations in striato-pallidal intrinsic functional connectivity as a prodrome of Parkinson’s disease

Dayan, E.; Browner, N.

10.1101/140830 — neuroscience — Posted on 2017-05-22

418 Mapping The Malaria Parasite Drug-Able Genome Using In Vitro Evolution And Chemogenomics

Cowell, A. N.; Istvan, E. S.; Lukens, A. K.; Gomez-Lorenzo, M. G.; Vanaerschot, M.; Sakata-Kato, T.; Flannery, E. L.; Magistrado, P.; Abraham, M.; Lamonte, G. M.; Williams, R. M.; Franco, V.; Arriago, I.; Linares, M.; Bopp, S.; Corey, V.; Gnadig, N. F.; Coburn-Flynn, O.; Reimer, C.; Gupta, P.; Murithi, J. M.; Fuchs, O.; Sasaki, E.; Kim, S. W.; Teng, C.; Wang, L. T.; Willis, P.; Siegel, D.; Tanaseichuk, O.; Zhong, Y.; Zhou, Y.; Otillie, S.; Gamo, F.-J.; Lee, M. C. S.; Goldberg, D. E.; Fidock, D. A.; Wirth, D. F.; Winzeler, E. A.

10.1101/139386 — genomics — Posted on 2017-05-22

419 Single-Cell RNA-Seq Of Rheumatoid Arthritis Synovial Tissue Using Low Cost Microfluidic Instrumentation

Stephenson, W.; Donlin, L. T.; Butler, A.; Rozo, C.; Rashidfarrokhi, A.; Goodman, S. M.; Ivashkiv, L. B.; Bykerk, V. P.; Orange, D. E.; Darnell, R. B.; Swerdlow, H. P.; Satija, R.

10.1101/140848 — genomics — Posted on 2017-05-22

420 Automated Structural Variant Verification In Human Genomes Using Single-Molecule Electronic DNA Mapping

Kaiser, M. D.; Davis, J. R.; Grinberg, B. S.; Oliver, J. S.; Sage, J. M.; Seward, L.; Bready, B.

10.1101/140699 — genomics — Posted on 2017-05-22

421 Dissecting HIV Virulence: Heritability Of Setpoint Viral Load, CD4+ T Cell Decline And Per-Parasite Pathogenicity

Bertels, F.; Marzel, A.; Leventhal, G.; Mitov, V.; Fellay, J.; Gunthard, H. F.; Boni, J.; Yerly, S.; Klimkait, T.; Aubert, V.; Battegay, M.; Rauch, A.; Cavassini, M.; Calmy, A.; Bernasconi, E.; Schmid, P.; Scherrer, A.; Muller, V.; Bonhoeffer, S.; Kouyos, R.; Regoes, R. R.; Swiss HIV Cohort Study,

10.1101/140012 — evolutionary biology — Posted on 2017-05-22

422 Single-Cell Reprogramming Of Mouse Embryo Development Through A Critical Transition State

Tsuchiya, M.; Giuliani, A.; Yoshikawa, K.

10.1101/140913 — developmental biology — Posted on 2017-05-22

423 FiberNET: An ensemble deep learning framework for clustering white matter fibers

Gupta, V.; Thomopoulos, S. I.; Rashid, F. M.; Thompson, P. M.

10.1101/141036 — bioinformatics — Posted on 2017-05-22

424 Framework For Quality Assessment Of Whole Genome, Cancer Sequences

Whalley, J. P.; Buchhalter, I.; Rheinbay, E.; Raine, K. M.; Kleinheinz, K.; Stobbe, M. D.; Werner, J.; Beltran, S.; Gut, M.; Huebschmann, D.; Hutter, B.; Livitz, D.; Perry, M.; Rosenberg, M.; Saksena, G.; Trotta, J.-R.; Eils, R.; Korbel, J.; Gerhard, D. S.; Campbell, P.; Getz, G.; Schlesner, M.; Gut, I. G.; PCAWG-Tech, ; PCAWG-QC, ; PCAWG Network,

10.1101/140921 — genomics — Posted on 2017-05-22

425 A Duplication Lost In Sugarcane Hybrids Revealed By Chloroplast Genome Assembly Of Wild Species Saccharum officinarum

Paes, D.; Matteoli, F. P.; Venancio, T. M.; Ferreira, P. C. G.; Grativol, C.

10.1101/141002 — genomics — Posted on 2017-05-22

426 An Amino Acid Motif In HLA-DRB1 Distinguishes Patients With Uveitis In Juvenile Idiopathic Arthritis

Haasnoot, A. J. W.; Schilham, M. W.; Kamphuis, S. S. M.; Hissink Muller, P. C. E.; Heiligenhaus, A.; Foll, D.; Ophoff, R. A.; Minden, K.; Radstake, T. R. D. J.; Den Hollander, A. I.; Reinards, T. H. C. M.; Hiddingh, S.; Schalij-Delfos, N.; Hoppenreijs, E. P. A. H.; van Rossum, M. A. J.; Wouters, C.; Saurenmann, R. K.; Wulffraat, N.; ICON-JIA Study Group, ; ten Cate, R.; de Boer, J. H.; Pulit, S. L.; Kuiper, J. J. W.

10.1101/140954 — genetics — Posted on 2017-05-22

427 A Complete Electron Microscopy Volume Of The Brain Of Adult Drosophila melanogaster

Zheng, Z.; Lauritzen, J. S.; Perlman, E.; Robinson, C. G.; Nichols, M.; Milkie, D.; Torrens, O.; Price, J.; Fisher, C. B.; Sharifi, N.; Calle-Schuler, S. A.; Kmecova, L.; Ali, I. J.; Karsh, B.; Trautman, E. T.; Bogovic, J.; Hanslovsky, P.; Jefferis, G. S. X. E.; Kazhdan, M.; Khairy, K.; Saalfeld, S.; Fetter, R. D.; Bock, D. D.

10.1101/140905 — neuroscience — Posted on 2017-05-22

428 Double Maternal Effect: Duplicated Nucleoplasmin 2 Genes, npm2a And npm2b, Are Shared By Fish And Tetrapods, And Have Distinct And Essential Roles In Early Embryogenesis

Cheung, C. T.; Pasquier, J.; Bouleau, A.; Nguyen, T.-V.; Chesnel, F.; Guiguen, Y.; Bobe, J.

10.1101/104760 — evolutionary biology — Posted on 2017-05-22

429 A Systems-Level Framework For Drug Discovery Identifies Csf1R As A Novel Anti-Epileptic Drug Target

Srivastava, P. K.; van Eyll, J.; Godard, P.; Mazzuferi, M.; Danis, B.; Vandenplas, C.; Foerch, P.; Leclercq, K.; Mairet-Coello, G.; Vanclef, F.; Shkura, K.; Laaniste, L.; Delahaye-Duriez, A.; Kaminski, R. M.; Petretto, E.; Johnson, M. R.

10.1101/140087 — systems biology — Posted on 2017-05-22

430 Influence Of Drought Stress On Alfalfa Yields And Nutritional Composition

Yinghao, L.; Qiang, W.; Gentu, G.; Guodong, H.; Yushan, J.

10.1101/140665 — plant biology — Posted on 2017-05-22

431 Cebranopadol Blocks The Escalation Of Cocaine Intake And Conditioned Reinstatement Of Cocaine Seeking In Rats

de Guglielmo, G.; Matzeu, A.; Kononoff, J.; Mattioni, J.; Martin-Fardon, R.; George, O.

10.1101/140566 — neuroscience — Posted on 2017-05-22

432 Selective Inhibitory Control Of Pyramidal Neuron Ensembles And Cortical Subnetworks By Chandelier Cells

Lu, J.; Tucciarone, J.; Padilla-Coreano, N.; He, M.; Gordon, J. A.; Huang, Z. J.

10.1101/140822 — neuroscience — Posted on 2017-05-22

433 The Role Of Diffusion MRI In Neuroscience

Assaf, Y.; Johansen-Berg, H.; Thiebaut de Schotten, M.

10.1101/140459 — neuroscience — Posted on 2017-05-22

434 The Genetic Intractability Of Symbiodinium microadriaticum To Standard Algal Transformation Methods

Chen, J. E.; Cui, G.; Aranda Lastra, M.

10.1101/140616 — molecular biology — Posted on 2017-05-22

435 Using Large-Scale Mutagenesis To Guide Single Amino Acid Scanning Experiments

Gray, V. E.; Hause, R. J.; Fowler, D. M.

10.1101/140707 — molecular biology — Posted on 2017-05-22

436 Cloning, Molecular Evolution And Functional Characterization Of ZmbHLH16, The Maize Ortholog Of OsTIP2 (OsbHLH142)

Liu, Y.; Li, J.; Wei, G.; Sun, Y.; Lu, Y.; Lan, H.; Li, C.; Zhang, S.; Cao, M.

10.1101/140806 — molecular biology — Posted on 2017-05-22

437 A Phylogenetic Method To Perform Genome-Wide Association Studies In Microbes That Accounts For Population Structure And Recombination

Collins, C.; Didelot, X.

10.1101/140798 — microbiology — Posted on 2017-05-22

438 Undocumented Potential For Primary Productivity In A Globally-Distributed Bacterial Photoautotroph

Graham, E.; Heidelberg, J. F.; Tully, B.

10.1101/140715 — microbiology — Posted on 2017-05-22

439 An RNA Virome Associated To The Golden Orb-Weaver Spider Nephila clavipes

Debat, H. J.

10.1101/140814 — microbiology — Posted on 2017-05-22

440 Distinct Core Promoter Codes Drive Transcription Initiation At Key Developmental Transitions In A Marine Chordate

Danks, G. B.; Navratilova, P.; Lenhard, B.; Thompson, E.

10.1101/140764 — genomics — Posted on 2017-05-22

441 Carbon inputs from riparian vegetation limit oxidation of physically-bound organic carbon via biochemical and thermodynamic processes

Graham, E. B.; Tfaily, M.; Crump, A. R.; Goldman, A. E.; Arntzen, E.; Romero, E.; Resch, C. T.; Kennedy, D. W.; Stegen, J. C.

10.1101/105486 — ecology — Posted on 2017-05-22

442 Overtraining Often Results In Topologically Incorrect Species Trees With Maximum Likelihood Methods

de Vienne, D. M.; Supek, F.; Gabaldon, T.

10.1101/140780 — bioinformatics — Posted on 2017-05-22

443 The Structure Of Small Beta Barrels

Youkharibache, P.; Veretnik, S.; Li, Q.; Bourne, P. E.

10.1101/140376 — bioinformatics — Posted on 2017-05-22

Samaha, J.; Postle, B. R.

10.1101/140558 — neuroscience — Posted on 2017-05-22

445 Notes On Synthesis Of Perdeutero-5-13C,5,5,5-Trifluoroisoleucine VI

Naugler, D.; Prosser, R. S.

10.1101/140681 — molecular biology — Posted on 2017-05-22

446 Development Of RNAseq Methodologies To Profile The In Vivo Transcriptome Of Bordetella pertussis During Murine Lung Infection

Wong, T.; Hall, J.; Boehm, D.; Barbier, M.; Damron, F. H.

10.1101/140632 — microbiology — Posted on 2017-05-22

447 Insuperable Problems Of The Genetic Code Initially Emerging In An RNA World

Wills, P.; Carter, C.

10.1101/140657 — evolutionary biology — Posted on 2017-05-22

448 Identification Of A Native Novel Oncolytic Immunoglobulin On Exfoliated Colon Epithelial Cells: A Bispecific Heterodimeric Chimera Of IgA/IgG

Albaugh, G. P.; Dutta, S. K.; Iyengar, V.; Shami, S.; Lohani, A.; Sainz, E.; Kessie, G.; Nair, P.; Lagerholm, S.; Kamra, A.; Chen, J.-H. J.; Kalavapudi, S.; Shores, R. L.; Phillips, L.; Nair, R.; Nair, P. P.

10.1101/140673 — cell biology — Posted on 2017-05-22

449 HMMER Cut-off Threshold Tool (HMMERCTTER): Supervised Classification of Superfamily Protein Sequences with a reliable Cut-off Threshold

Pagnuco, I. A.; Revuelta, M. V.; Bondino, H. G.; Brun, M.; ten Have, A.

10.1101/130443 — bioinformatics — Posted on 2017-05-22

450 Plasticity of a neural dictionary in prefrontal cortex

Singh, A.; Peyrache, A.; Humphries, M. D.

10.1101/027102 — neuroscience — Posted on 2017-05-22

451 Striatal action-value neurons reconsidered

Elber-Dorozko, L.; Loewenstein, Y.

10.1101/087502 — neuroscience — Posted on 2017-05-22

452 Inferring decoding strategies for multiple correlated neural populations

Lakshminarasimhan, K.; Pouget, A.; DeAngelis, G.; Angelaki, D.; Pitkow, X.

10.1101/108019 — neuroscience — Posted on 2017-05-22

453 Network analysis of the hominin origin of Herpes Simplex virus 2 from fossil data

Underdown, S.; Kumar, K.; Houldcroft, C.

10.1101/105007 — evolutionary biology — Posted on 2017-05-22

454 Label-free high-resolution 3-D imaging of gold nanoparticles inside live cells using optical diffraction tomography

Kim, D.; Oh, N.; Kim, K.; Lee, S.; Pack, C.-G.; Park, J.; Park, Y.

10.1101/097113 — biophysics — Posted on 2017-05-22

455 Genetic Overlap Of Depression With Cardiometabolic Diseases And Implications For Drug Repurposing For Comorbidities

Wong, B. C.-F.; Chau, C. K.-L.; So, H.-C.

10.1101/140590 — genomics — Posted on 2017-05-22

456 Identity-By-Descent Refines Mapping Of Candidate Regions For Preaxial Polydactyly In A Large Chinese Pedigree

Yang, X.; Shen, Q.; Sulaiman, X.; Liu, H.; Peng, M.; Zhang, Y.

10.1101/139428 — genetics — Posted on 2017-05-22

457 Promoter Or Enhancer Activation By CRISPRa Rescues Haploinsufficiency Caused Obesity

Matharu, N.; Rattanasopha, S.; Maliskova, L.; Wang, Y.; Hardin, A.; Vaisse, C.; Ahituv, N.

10.1101/140426 — genetics — Posted on 2017-05-22

458 Re-Evaluating Evolution In The HIV Reservoir

Rosenbloom, D. I. S.; Hill, A. L.; Laskey, S. B.; Siliciano, R. F.

10.1101/140731 — evolutionary biology — Posted on 2017-05-22

459 Diet And Life Stage Associated Remodeling Of Lipid Metabolism Regulation In The Duplicated Atlantic Salmon Genome

Gillard, G.; Harvey, T. N.; Gjuvsland, A.; Jin, Y.; Thomassen, M.; Lien, S.; Leaver, M.; Torgersen, J. S.; Hvidsten, T. R.; Vik, J. O.; Sandve, S. R.

10.1101/140442 — evolutionary biology — Posted on 2017-05-22

460 SNaReSim: Synthetic Nanopore Read Simulator

Faucon, P.; Balachandran, P.; Crook, S.

10.1101/133652 — bioinformatics — Posted on 2017-05-22

461 Exact Topological Inference For Paired Brain Networks Via Persistent Homology

Chung, M. K.; Villalta-Gil, V.; Lee, H.; Rathouz, P. J.; Lahey, B. B.; Zald, D. H.

10.1101/140533 — neuroscience — Posted on 2017-05-22

462 Recapitulating Early Development Of Mouse Musculoskeletal Precursors Of The Paraxial Mesoderm In Vitro

Chal, J.; Al Tanoury, Z.; Oginuma, M.; Moncuquet, P.; Gobert, B.; Miyanari, A.; Tassy, O.; Guevara, G.; Bera, A.; Sumara, O.; Garnier, J.-M.; Kennedy, L.; Knockaert, M.; Gayraud-Morel, B.; Tajbakhsh, S.; Pourquie, O.

10.1101/140574 — developmental biology — Posted on 2017-05-22

463 Identification Of A Native Novel Oncolytic Immunoglobulin On Exfoliated Colon Epithelial Cells: A Bispecific Heterodimeric Chimera Of IgA/IgG

10.1101/140673 — cell biology — Posted on 2017-05-22

464 Integrating tissue specific mechanisms into GWAS summary results

Barbeira, A.; Dickinson, S. P.; Torres, J. M.; Bonazzola, R.; Zheng, J.; Torstenson, E. S.; Wheeler, H. E.; Shah, K. P.; Edwards, T.; Garcia, T.; GTEx Consortium, ; Nicolae, D.; Cox, N. J.; Im, H. K.

10.1101/045260 — genomics — Posted on 2017-05-21

465 Control Of AMPA Receptor Activity By The Extracellular Loops Of Auxiliary Proteins

Riva, I.; Eibl, C.; Volkmer, R.; Carbone, A. L.; Plested, A. J. R.

10.1101/140053 — biophysics — Posted on 2017-05-21

466 Cellobiose consumption uncouples extracellular glucose sensing and glucose metabolism in Saccharomyces cerevisiae

Chomvong, K.; Benjamin, D.; Nomura, D.; Cate, J.

10.1101/076364 — systems biology — Posted on 2017-05-21

467 Transcranial alternating current stimulation (tACS) mechanisms and protocols

Tavakoli, A. V.; Yun, K.

10.1101/138834 — neuroscience — Posted on 2017-05-21

468 Central amygdala CRF pathways in alcohol dependence

de Guglielmo, G.; Kallupi, M.; Pomrenze, M. B.; Crawford, E.; Simpson, S.; Schweitzer, P.; Koob, G. F.; Messing, R. O.; George, O.

10.1101/134759 — neuroscience — Posted on 2017-05-21

469 Enhancing Multiplex Genome Editing by Natural Transformation (MuGENT) via inactivation of ssDNA exonucleases

Dalia, T. N.; Yoon, S. H.; Galli, E.; Barre, F.-X.; Waters, C. M.; Dalia, A. B.

10.1101/127308 — microbiology — Posted on 2017-05-21

470 Specific hypersensitive response-associated recognition of new apoplastic effectors from Cladosporium fulvum in wild tomato

Mesarich, C. H.; Okmen, B.; Rovenich, H.; Griffiths, S. A.; Wang, C.; Karimi Jashni, M.; Mihajlovski, A.; Collemare, J.; Hunziker, L.; Deng, C. H.; van der Burgt, A.; Beenen, H. G.; Templeton, M. D.; Bradshaw, R. E.; de Wit, P. J. G. M.

10.1101/127746 — microbiology — Posted on 2017-05-21

471 Gene knockout shows that PML (TRIM19) does not restrict the early stages of HIV-1 infection in human cell lines

Masroori, N.; Cherry, P.; Merindol, N.; Li, J.-x.; Dufour, C.; Poulain, L.; Plourde, M. B.; Berthoux, L.

10.1101/109769 — immunology — Posted on 2017-05-21

472 The Genomic History Of Southeastern Europe

10.1101/135616 — genetics — Posted on 2017-05-21

473 Badnaviruses Of Sweetpotato: Symptomless Co-Inhabitants On A Global Scale

Kreuze, J.; Perez, A.; Galvez, M.; Cuellar, W. J.

10.1101/140517 — plant biology — Posted on 2017-05-21

474 In Vivo Host-Pathogen Interaction As Revealed By Global Proteomic Profiling Of Zebrafish Larvae

Diaz-Pascual, F.; Ortiz-Severin, J.; Varas, M. A.; Allende, M. L.; Chavez, F. P.

10.1101/140509 — microbiology — Posted on 2017-05-21

475 Assigning Function To Natural Allelic Variation Via Dynamic Modeling Of Gene Network Induction

Richard, M.; Chuffart, F.; Duplus-Bottin, H.; Pouyet, F.; Spichty, M.; Fulcrand, E.; Entrevan, M.; Barthelaix, A.; Springer, M.; Jost, D.; Yvert, G.

10.1101/140467 — systems biology — Posted on 2017-05-20

476 Cancer Genome Interpreter Annotates The Biological And Clinical Relevance Of Tumor Alterations

Tamborero, D.; Rubio-Perez, C.; Deu-Pons, J.; Schroeder, M. P.; Vivancos, A.; Rovira, A.; Tusquets, I.; Albanell, J.; Rodon, J.; Tabernero, J.; de Torres, C.; Dienstmann, R.; Gonzalez-Perez, A.; Lopez-Bigas, N.

10.1101/140475 — cancer biology — Posted on 2017-05-20

477 Reported Drosophila Courtship Song Rhythms Remain Data Analysis Artifacts

Stern, D.; Clemens, J.; Coen, P.; Calhoun, A.; Hogenesch, J.; Arthur, B.; Murthy, M.

10.1101/140483 — animal behavior and cognition — Posted on 2017-05-20

478 Ophiuroid Phylotranscriptomics Enables Discovery Of Novel Echinoderm Representatives Of Bilaterian Neuropeptide Families And Reconstruction Of Neuropeptide Precursor Evolution Over ~270 Million Years

Zandawala, M.; Moghul, I.; Yanez Guerra, L. A.; Delroisse, J.; Abylkassimova, N.; Hugall, A. F.; O'Hara, T. D.; Elphick, M. R.

10.1101/129783 — neuroscience — Posted on 2017-05-20

479 Oscillatory Default Mode Network Coupling In Concussion

Dunkley, B. T.; Urban, K.; Da Costa, L.; Wong, S.; Pang, E. W.; Taylor, M. J.

10.1101/140368 — neuroscience — Posted on 2017-05-20

480 A robust dissociation among the language, multiple demand, and default mode networks: evidence from inter-region correlations in effect size

Mineroff, Z. A.; Blank, I.; Mahowald, K.; Fedorenko, E.

10.1101/140384 — neuroscience — Posted on 2017-05-20

481 Investigating The Functional Consequence Of White Matter Damage: An Automatic Pipeline To Create Longitudinal Disconnection Tractograms

Jordan, K. M.; Keshavan, A.; Caverzasi, E.; Osorio, J.; Papinutto, N.; Amirbekian, B.; Berger, M. S.; Henry, R. G.

10.1101/140137 — bioengineering — Posted on 2017-05-20

482 Transparency in Authors’ Contributions and Responsibilities to Promote Integrity in Scientific Publication

McNutt, M.; Bradford, M.; Drazen, J.; Hanson, R. B.; Howard, B.; Jamieson, K. H.; Kiermer, V.; Magoulias, M.; Marcus, E.; Pope, B. K.; Schekman, R.; Swaminathan, S.; Stang, P.; Verma, I.

10.1101/140228 — scientific communication and education — Posted on 2017-05-20

483 Consequences Of NMDA Receptor Deficiency Can Be Rescued In The Adult Brain

Mielnik, C. A.; Chen, Y.; Binko, M. A.; Islam, R.; Milenkovic, M.; Horsfall, W.; Salahpour, A.; Lambe, E. K.; Ramsey, A.

10.1101/140343 — neuroscience — Posted on 2017-05-20

484 Aberration-corrected high-NA open-top selective-plane illumination microscopy for biological imaging

McGorty, R.; Xie, D.; Huang, B.

10.1101/140418 — bioengineering — Posted on 2017-05-20

485 A Theta Band Network Involving Prefrontal Cortex Unique To Human Episodic Memory

Young, J. J.; Rudebeck, P. H.; Marcuse, L. V.; Fields, M. C.; Yoo, J. Y.; Panov, F.; Ghatan, S.; Fazl, A.; Mandelbaum, S.; Baxter, M. G.

10.1101/140251 — neuroscience — Posted on 2017-05-19

486 Ccr4 And Pop2 Control Poly(A) Tail Length In Saccharomyces cerevisiae

Balagopal, V.; Bolisetty, M.; Al Husaini, N.; Coller, J.; Graveley, B. R.

10.1101/140202 — genomics — Posted on 2017-05-19

487 How to get the most bang for your buck: the evolution and physiology of nutrition-dependent resource allocation strategies

Ng'oma, E.; Perinchery, A. M.; King, E. G.

10.1101/113027 — evolutionary biology — Posted on 2017-05-19

488 Telomerecat: A Ploidy-Agnostic Method For Estimating Telomere Length From Whole Genome Sequencing Data

Farmery, J. H.; Smith, M. L.; NIHR BioResource - Rare Diseases, ; Lynch, A. G.

10.1101/139972 — bioinformatics — Posted on 2017-05-19

489 An Inference Approach Combines Spatial And Temporal Gene Expression Data To Predict Gene Regulatory Networks In Arabidopsis Stem Cells

de Luis Balaguer, M. A.; Fisher, A. P.; Clark, N. M.; Fernandez-Espinosa, M. G.; Moller, B.; Weijers, D.; Lohmann, J. U.; Williams, C.; Lorenzo, O.; Sozzani, R.

10.1101/140269 — plant biology — Posted on 2017-05-19

490 TDG Regulates Cell Cycle Progression In Human Neural Progenitors

Germanguz, I.; Park, J.; Cinkornpumin, J.; Soloman, A.; Ohashi, M.; Lowry, W. E.

10.1101/140319 — molecular biology — Posted on 2017-05-19

491 CRISPR/Cas9 Mutation Of A Gonad-Expressed Opsin Prevents Jellyfish Light-Induced Spawning

Quiroga Artigas, G.; Lapebie, P.; Leclere, L.; Takeda, N.; Deguchi, R.; Jekely, G.; Momose, T.; Houliston, E.

10.1101/140210 — evolutionary biology — Posted on 2017-05-19

492 Daam2 Driven Degradation Of VHL Promotes Gliomagenesis

Zhu, W.; Krishna, S.; Garcia, C.; Lin, C.-C. J.; Scott, K. L.; Mohila, C.; Creighton, C.; Yoo, S.-H.; Lee, H. K.; Deneen, B.

10.1101/140277 — cancer biology — Posted on 2017-05-19

493 mTORC2/AKT/HSF1/HuR Constitute A Feed-Forward Loop Regulating Rictor Expression And Tumor Growth In Glioblastoma

Holmes, B.; Benavides-Serrato, A.; Freeman, R. S.; Landon, K. A.; Bashir, T.; Nishimura, R. N.; Gera, J.

10.1101/140293 — cancer biology — Posted on 2017-05-19

494 Cooperative Accumulation Of Dynein-Dynactin At Microtubule Minus-Ends Drives Microtubule Network Reorganization

Tan, R.; Foster, P. J.; Needleman, D. J.; McKenney, R. J.

10.1101/140392 — biophysics — Posted on 2017-05-19

495 Deep learning of the regulatory grammar of yeast 5’ untranslated regions from 500,000 random sequences

Cuperus, J. T.; Groves, B.; Kuchina, A.; Rosenberg, A. B.; Jojic, N.; Fields, S.; Seelig, G.

10.1101/137547 — synthetic biology — Posted on 2017-05-19

496 In Vivo Phenotyping Of Parkinson-Specific Stem Cells Reveals Increased a-Synuclein Levels But No Spreading

Hemmer, K.; Smits, L. M.; Bolognin, S.; Schwamborn, J. C.

10.1101/140178 — neuroscience — Posted on 2017-05-19

497 A Theta Band Network Involving Prefrontal Cortex Unique To Human Episodic Memory

Young, J. J.; Rudebeck, P. H.; Marcuse, L. V.; Fields, M. C.; Yoo, J. Y.; Panov, F.; Ghatan, S.; Fazl, A.; Mandelbaum, S.; Baxter, M. G.

10.1101/140251 — neuroscience — Posted on 2017-05-19

498 The Resistome Of Important Human Pathogens

Munck, C.; Ellabaan, M.; Klausen, M. S.; Sommer, M. O. A.

10.1101/140194 — microbiology — Posted on 2017-05-19

499 Control Of AMPA Receptor Activity By The Extracellular Loops Of Auxiliary Proteins

Riva, I.; Eibl, C.; Volkmer, R.; Carbone, A. L.; Plested, A.

10.1101/140053 — biophysics — Posted on 2017-05-19

500 Interactive Phenotyping Of Large-Scale Histology Imaging Data With HistomicsML

Nalisnik, M.; Amgad, M.; Lee, S.; Halani, S. H.; Vega, J. V.; Brat, D. J.; Gutman, D. A.; Cooper, L. A. D.

10.1101/140236 — bioinformatics — Posted on 2017-05-19

501 Mobius Assembly: A Versatile Framework For Golden Gate Assembly

Andreou, A. I.; Nakayama, N.

10.1101/140095 — synthetic biology — Posted on 2017-05-19

502 Cooperation And Liaison Between Universities And Editors (CLUE): Recommendations On Best Practice

Wager, E.; Kleinert, S.; Garfinkel, M.; Bahr, V.; Baždarić, K.; Farthing, M.; Graf, C.; Hammatt, Z.; Horn, L.; King, S.; Parrish, D.; Pulverer, B.; Taylor, P.; van Meer, G.

10.1101/139170 — scientific communication and education — Posted on 2017-05-19

503 Morphometrics Reveals Complex And Heritable Apple Leaf Shapes

Migicovsky, Z.; Li, M.; Chitwood, D. H.; Myles, S.

10.1101/139303 — plant biology — Posted on 2017-05-19

504 Jellyfish Oocyte Maturation Inducing Hormone And Neuroendocrine Regulation Of Reproduction

Takeda, N.; Kon, Y.; Quiroga Artigas, G.; Lapebie, P.; Barreau, C.; Koizumi, O.; Kishimoto, T.; Tachibana, K.; Houliston, E.; Deguchi, R.

10.1101/140160 — developmental biology — Posted on 2017-05-19

505 Telomerecat: A Ploidy-Agnostic Method For Estimating Telomere Length From Whole Genome Sequencing Data

Farmery, J. H. R.; Smith, M. L.; NIHR BioResource - Rare Diseases, ; Lynch, A. G.

10.1101/139972 — bioinformatics — Posted on 2017-05-19

506 Oligomeric States In Sodium Ion-Dependent Regulation Of Cyanobacterial Histidine Kinase-2

Ibrahim, I. M.; Wang, L.; Puthiyaveetil, S.; Krauss, N.; Nield, J.; Allen, J. F.

10.1101/140145 — biochemistry — Posted on 2017-05-19

507 Reproductive Period, Endogenous Estrogen Exposure And Dementia Incidence Among Women In Latin America And China; A 10/66 Population-Based Cohort Study

Prince, M. J.; Acosta, D.; Guerra, M.; Huang, Y.; Jimenez-Velazquez, I. Z.; Llibre Rodriguez, J. J.; Salas, A.; Sosa, A. L.; Chua, K.-C.; Dewey, M. E.; Liu, Z.; Mayston, R.; Valhuerdi, A.

10.1101/137687 — epidemiology — Posted on 2017-05-19

508 Thoracolumbar Intervertebral Disc Area Morphometry In Elderly Chinese Men And Women: Radiographic Quantifications At Baseline And Changes At Year-4 Follow-Up

Wang, J.-Q.; Kaplar, Z.; Griffith, J. F.; Deng, M.; Leung, J. C. S.; Kwok, A. W. L.; Kwok, T.; Leung, P. C.; Wang, Y.-X.

10.1101/139402 — epidemiology — Posted on 2017-05-19

509 Enhancing Ebola Virus Disease Surveillance And Prevention In Counties Without Confirmed Cases In Rural Liberia: Experiences From Sinoe County During The Flare-Up In Monrovia, April To June, 2016

Weah, V. D.; Doedeh, J. S.; Wiah, S. Q.; Nyema, E.; Lombeh, S.; Naiene, J.

10.1101/139154 — epidemiology — Posted on 2017-05-19

510 Side Effects And The Need For Secrecy: Characterising Discontinuation Of Modern Contraception And Its Causes In Ethiopia Using Mixed Methods

Alvergne, A.; Stevens, R.; Gurmu, E.

10.1101/140004 — epidemiology — Posted on 2017-05-19

511 Could The Recent Zika Epidemic Have Been Predicted?

Munoz, A. G.; Thomson, M. C.; Stewart-Ibarra, A. M.; Vecchi, G. A.; Chourio, X.; Najera, P.; Moran, Z.; Yang, X.

10.1101/139253 — epidemiology — Posted on 2017-05-19

512 Community-Led Research Discovers Links Between Elusive Symptoms And Clinical Tests

Gabashvili, I. S.

10.1101/139014 — clinical trials — Posted on 2017-05-19

513 Simultaneous Activation Of Parallel Sensory Pathways Promotes A Grooming Sequence In Drosophila

Hampel, S.; McKellar, C. E.; Simpson, J. H.; Seeds, A. M.

10.1101/139956 — neuroscience — Posted on 2017-05-19

514 Multivariate Genome-wide and integrated transcriptome and epigenome-wide analyses of the Well-being spectrum.

Baselmans, B. M.; Jansen, R.; Ip, H. F.; van Dongen, J.; Abdellaoui, A.; van de Weijer, M. P.; Bao, Y.; Smart, M.; Kumari, M.; Willemsen, G.; Hottenga, J. J.; BIOS consortium, ; Social Science Genetic Association Consortium, ; de Geus, E. J.; Boomsma, D. I.; Nivard, M. G.; Bartels, M.

10.1101/115915 — genetics — Posted on 2017-05-19

515 Fast Antibiotic Susceptibility Testing based on single cell growth rate measurements

Baltekin, O.; Boucharin, A.; Tano, E.; Andersson, D. I.; Elf, J.

10.1101/071407 — molecular biology — Posted on 2017-05-19

516 Random Sequences Rapidly Evolve Into De Novo Promoters

Yona, A. H.; Alm, E. J.; Gore, J.

10.1101/111880 — evolutionary biology — Posted on 2017-05-19

517 Expanding The Computable Reactome In Pseudomonas putida Reveals Metabolic Cycles Providing Robustness

Nogales, J.; Gudmundsson, S.; Duque, E.; Ramos, J. L.; Palsson, B. O.

10.1101/139121 — systems biology — Posted on 2017-05-19

518 CRootBox: A Structural-Functional Modelling Framework For Root Systems

Schnepf, A.; Leitner, D.; Landl, M.; Lobet, G.; Mai, T. H.; Morandage, S.; Sheng, C.; Zoerner, M.; Vanderborght, J.; Vereecken, H.

10.1101/139980 — plant biology — Posted on 2017-05-19

519 A CRISPR-Based Yeast Two-Hybrid System For Investigating RNA-Protein Interactions

Hass, E. P.; Zappulla, D. C.

10.1101/139600 — molecular biology — Posted on 2017-05-19

520 ALPK1 And TIFA Dependent Innate Immune Response Triggered By The Helicobacter Pylori Type IV Secretion System

Zimmermann, S.; Pfannkuch, L.; Al-Zeer, M.; Bartfeld, S.; Koch, M.; Liu, J.; Rechner, C.; Soerensen, M.; Sokolova, O.; Zamyatina, A.; Kosma, P.; Maeurer, A. P.; Glowinski, F.; Pleissner, K.-P.; Schmid, M.; Brinkmann, V.; Naumann, M.; Rother, M.; Machuy, N.; Meyer, T. F.

10.1101/139998 — molecular biology — Posted on 2017-05-19

521 Functional Role Of Lanthanides In Enzymatic Activity And Transcriptional Regulation Of PQQ-Dependent Alcohol Dehydrogenases In Pseudomonas putida KT2440

Wehrmann, M.; Billard, P.; Meriadec, A. M.; Zegeye, A.; Klebensberger, J.

10.1101/140046 — microbiology — Posted on 2017-05-19

522 Changes Of Gene Expression But Not Cytosine Methylation Are Associated With Behavioural Plasticity Of Parental Care

Cunningham, C. B.; Ji, L.; McKinney, E. C.; Benowitz, K. M.; Schmitz, R. J.; Moore, A. J.

10.1101/139634 — genetics — Posted on 2017-05-19

523 Molecular evidence for the early evolution of photosynthetic water oxidation

Cardona, T.; Sanchez-Baracaldo, P.; Rutherford, A. W.; Larkum, A.

10.1101/109447 — evolutionary biology — Posted on 2017-05-19

524 STRIDE: Species Tree Root Inference From Gene Duplication Events

Emms, D. M.; Kelly, S.

10.1101/140020 — evolutionary biology — Posted on 2017-05-19

525 Cell Dynamics Underlying Oriented Growth Of The Drosophila Imaginal Wing Disc

Dye, N. A.; Popovic, M.; Spannl, S.; Etournay, R.; Kainmueller, D.; Myers, E. W.; Julicher, F.; Eaton, S.

10.1101/140038 — developmental biology — Posted on 2017-05-19

526 Microfluidic Immobilization And Subcellular Imaging Of Developing Caenorhabditis elegans

Shivers, J.; Uppaluri, S.; Brangwynne, C. P.

10.1101/139915 — developmental biology — Posted on 2017-05-19

527 NQO1 Binds And Supports SIRT1 Function

Tsvetkov, P.; Adler, J.; Adamovich, Y.; Asher, G.; Reuven, N.; Shaul, Y.

10.1101/139907 — cell biology — Posted on 2017-05-19

528 Systematic Analysis Of RNA-Seq-Based Gene Co-Expression Across Multiple Plants

Yu, H.; Jiao, B.; Liang, C.

10.1101/139923 — bioinformatics — Posted on 2017-05-19

529 States and traits of neural irregularity in the age-varying human brain

Waschke, L.; Woestmann, M.; Obleser, J.

10.1101/103432 — neuroscience — Posted on 2017-05-19

530 A core speech circuit between primary motor, somatosensory, and auditory cortex: Evidence from connectivity and genetic descriptions

Skipper, J. I.; Hasson, U.

10.1101/139550 — neuroscience — Posted on 2017-05-19

531 Salmonella enterica Serovar Typhimurium ST313 Responsible For Gastroenteritis In The UK Are Genetically Distinct From Isolates Causing Bloodstream Infections In Africa

Ashton, P. M.; Owen, S. V.; Kaindama, L.; Rowe, W. P. M.; Lane, C.; Larkin, L.; Nair, S.; Jenkins, C.; de Pinna, E.; Feasey, N.; Hinton, J. C. D.; Dallman, T.

10.1101/139576 — microbiology — Posted on 2017-05-19

532 Allele specific expression and methylation in thebumblebee, Bombus terrestris

Lonsdale, Z. N.; Lee, K. D.; Kyriakidou, M.; Amarasinghe, H. E.; Nathanael, D.; Mallon, E. B.

10.1101/022657 — evolutionary biology — Posted on 2017-05-19

533 Can Ebola Virus evolve to be less virulent in humans?

Sofonea, M. T.; Aldakak, L.; Boullosa, L. F. V. V.; Alizon, S.

10.1101/108589 — evolutionary biology — Posted on 2017-05-19

534 Rigid geometry solves "curse of dimensionality" effects in clustering methods: An application to omics data

Adachi, S.

10.1101/094391 — bioinformatics — Posted on 2017-05-19

535 Domino-Like Propagation Of Collective U-Turns In Fish Schools

Lecheval, V.; Jiang, L.; Tichit, P.; Sire, C.; Hemelrijk, C. K.; Theraulaz, G.

10.1101/138628 — animal behavior and cognition — Posted on 2017-05-19

536 Intrinsic brain connectivity after partial sleep deprivation in young and older adults: results from the Stockholm Sleepy Brain study

Nilsonne, G.; Tamm, S.; Schwarz, J.; Almeida, R.; Fischer, H.; Kecklund, G.; Lekander, M.; Fransson, P.; Akerstedt, T.

10.1101/073494 — neuroscience — Posted on 2017-05-19

537 Network analysis of the hominin origin of Herpes Simplex virus 2 from fossil data

Underdown, S.; Kumar, K.; Houldcroft, C.

10.1101/105007 — evolutionary biology — Posted on 2017-05-19

538 Hitchhiking on the Frontier: Accelerating Eusociality and other Improbable Evolutionary Outcomes by Trait Hitchhiking in a Boom-and-Bust Feedback Loop

Calvin, W. H.

10.1101/053819 — evolutionary biology — Posted on 2017-05-19

539 How to improve parameter estimates in GLM-based fMRI data analysis: cross-validated Bayesian model averaging

Soch, J.; Meyer, A. P.; Haynes, J.-D.; Allefeld, C.

10.1101/095778 — neuroscience — Posted on 2017-05-18

540 Simulating The Impact Of Sensorimotor Deficits On Reaching Performance

Sketch, S. M.; Simpson, C. S.; Crevecoeur, F.; Okamura, A. M.

10.1101/139857 — neuroscience — Posted on 2017-05-18

541 Direct Modulation Of Aberrant Brain Network Connectivity Through Real-Time NeuroFeedback

Ramot, M.; Kimmich, S.; Gonzalez-Castillo, J.; Roopchansingh, V.; Popal, H.; White, E.; Gotts, S. J.; Martin, A.

10.1101/139824 — neuroscience — Posted on 2017-05-18

542 The industrial anaerobe Clostridium acetobutylicum uses polyketides to regulate butanol production and differentiation

Herman, N.; Kim, S.-J.; Li, J. S.; Cai, W.; Koshino, H.; Zhang, W.

10.1101/139873 — microbiology — Posted on 2017-05-18

543 A Comparison Between Single Cell RNA Sequencing And Single Molecule RNA FISH For Rare Cell Analysis

Torre, E. A.; Dueck, H.; Shaffer, S.; Gospocic, J.; Gupte, R.; Bonasio, R.; Kim, J.; Murray, J.; Raj, A.

10.1101/138289 — genomics — Posted on 2017-05-18

544 High-Definition Electronic Genome Maps From Single Molecule Data

Oliver, J. S.; Catalano, A.; Davis, J. R.; Grinberg, B. S.; Hutchins, T. E.; Kaiser, M. D.; Nurnberg, S.; Sage, J. M.; Seward, L.; Simelgor, G.; Weiner, N. K.; Bready, B.

10.1101/139840 — genomics — Posted on 2017-05-18

545 Inferring Genetic Interactions From Comparative Fitness Data

Crona, K.; Gavryushkin, A.; Greene, D.; Beerenwinkel, N.

10.1101/137372 — evolutionary biology — Posted on 2017-05-18

546 Targeting xCT-Mediated Glutamate Release Normalizes Tumor Angiogenesis In The Brain

Fan, Z.; Broggini, T.; Yakubov, E.; Sehm, T.; Schuermann, S.; Meyer, E. P.; Stankovic, N. D.; Schmidt, M. H.; Stampanoni, M.; Czabanka, M. A.; Nitsch, R.; Buchfelder, M.; Friedrich, O.; Eyupoglu, I. Y.; Savaskan, N. E.

10.1101/134924 — cell biology — Posted on 2017-05-18

547 lme4qtl: linear mixed models with flexible covariance structure for genetic studies of related individuals

Ziyatdinov, A.; Vazquez-Santiago, M.; Brunel, H.; Martinez-Perez, A.; Aschard, H.; Soria, J. M.

10.1101/139816 — bioinformatics — Posted on 2017-05-18

548 A robust role for motor cortex

Lopes, G.; Nogueira, J.; Dimitriadis, G.; Menendez, J. A.; Paton, J. J.; Kampff, A. R.

10.1101/058917 — neuroscience — Posted on 2017-05-18

549 Cross-laboratory analysis of brain cell type transcriptomes with applications to interpretation of bulk tissue data

Mancarci, B. O.; Toker, L.; Tripathy, S. J.; Li, B.; Rocco, B.; Sibille, E.; Pavlidis, P.

10.1101/089219 — neuroscience — Posted on 2017-05-18

550 Human confidence reports account for sensory uncertainty but in a non-Bayesian way

Adler, W. T.; Ma, W. J.

10.1101/093203 — neuroscience — Posted on 2017-05-18

551 Infants Are Superior In Implicit Crossmodal Learning And Use Other Learning Mechanisms Than Adults

Rohlf, S.; Habets, B.; von Frieling, M.; Roder, B.

10.1101/139535 — neuroscience — Posted on 2017-05-18

552 A Core Speech Circuit Between Primary Motor, Somatosensory, And Auditory Cortex: Evidence From Connectivity And Genetic Descriptions

Skipper, J. I.; Hasson, U.

10.1101/139550 — neuroscience — Posted on 2017-05-18

553 Individual Differences In Perceptual Decision Making Reflect Neural Variability In Medial Frontal Cortex

Kurikawa, T.; Handa, T.; Fukai, T.

10.1101/139493 — neuroscience — Posted on 2017-05-18

554 Parallel Occurrence Of Theta And Respiration-Coupled Network Oscillations Throughout The Mouse Brain

Tort, A. B. L.; Ponsel, S.; Jessberger, J.; Yanovsky, Y.; Brankačk, J.; Draguhn, A.

10.1101/139485 — neuroscience — Posted on 2017-05-18

555 Switch Independent Task Representations In Frontal And Parietal Cortex

Loose, L.; Wisniewski, D.; Rusconi, M.; Goschke, T.; Haynes, J.-D.

10.1101/138230 — neuroscience — Posted on 2017-05-18

556 Network Analysis Of High-Density Microelectrode Recordings

Bullmann, T.; Radivojevic, M.; Huber, S. T.; Deligkaris, K.; Hierlemann, A.; Frey, U.

10.1101/139436 — neuroscience — Posted on 2017-05-18

557 Salmonella enterica Serovar Typhimurium ST313 Responsible For Gastroenteritis In The UK Are Genetically Distinct From Isolates Causing Bloodstream Infections In Africa

Ashton, P. M.; Owen, S.; Kaindama, L.; Rowe, W. P. M.; Lane, C.; Larkin, L.; Nair, S.; Jenkins, C.; de Pinna, E.; Feasey, N.; Hinton, J. C. D.; Dallman, T.

10.1101/139576 — microbiology — Posted on 2017-05-18

558 Dynamics Of The Human Antibody Repertoire Following B-cell Depletion In Systemic Sclerosis

de Bourcy, C. F. A.; Dekker, C. L.; Davis, M. M.; Nicolls, M. R.; Quake, S. R.

10.1101/139758 — immunology — Posted on 2017-05-18

559 lme4qtl: Linear Mixed Models With Flexible Covariance Structure For Genetic Studies Of Related Individuals

Ziyatdinov, A.; Vazquez-Santiago, M.; Brunel, H.; Martinez-Perez, A.; Aschard, H.; Soria, J. M.

10.1101/139816 — genetics — Posted on 2017-05-18

560 How Well Do You Know Your Mutation? Complex Effects Of Genetic Background On Expressivity, Complementation, And Ordering Of Allelic Effects

Chandler, C. H.; Chari, S.; Kowalski, A.; Choi, L.; Tack, D.; DeNieu, M.; Pitchers, W. R.; Sonnenschein, A.; Marvin, L.; Hummel, K.; Marier, C.; Victory, A.; Porter, C.; Mammel, A.; Holms, J.; Sivaratnam, G.; Dworkin, I.

10.1101/139733 — genetics — Posted on 2017-05-18

561 Disentangling The Effects Of Selection And Loss Bias On Gene Dynamics

Iranzo, J.; Cuesta, J. A.; Manrubia, S.; Katsnelson, M. I.; Koonin, E. V.

10.1101/139725 — evolutionary biology — Posted on 2017-05-18

562 The Prevalence And Benefits Of Admixture During Species Invasions: A Role For Epistasis?

Barker, B. S.; Cocio, J. E.; Anderson, S. R.; Braasch, J.; Cang, F. A.; Gillette, H. D.; Dlugosch, K. M.

10.1101/139709 — evolutionary biology — Posted on 2017-05-18

563 Hellbender Salamanders (Cryptobranchus alleganiensis) Exhibit An Ontogenetic Shift In Microhabitat Use In A Blue Ridge Physiographic Region Stream

Hecht, K. A.; Freake, M. J.; Nickerson, M. A.; Colclough, P.

10.1101/139766 — ecology — Posted on 2017-05-18

564 Integrating TARA Oceans Datasets Using Unsupervised Multiple Kernel Learning

Mariette, J.; Villa-Vialaneix, N.

10.1101/139287 — bioinformatics — Posted on 2017-05-18

565 All Fingers Are Not The Same: Handling Variable-Length Sequences In A Discriminative Setting Using Conformal Multi-Instance Kernels

Nikumbh, S.; Ebert, P.; Pfeifer, N.

10.1101/139618 — bioinformatics — Posted on 2017-05-18

566 Evaluation Of Classifier Performance For Multiclass Phenotype Discrimination In Untargeted Metabolomics

Trainor, P. J.; DeFilippis, A. P.; Rai, S. N.

10.1101/139584 — bioinformatics — Posted on 2017-05-18

567 STAR Chimeric Post For Rapid Detection Of Circular RNA And Fusion Transcripts

Akers, N. K.; Schadt, E.; Losic, B.

10.1101/139808 — bioinformatics — Posted on 2017-05-18

568 Light Amplification By Biofilm And Its Polarization Dependence

Ray, S.; Dasgupta, A. K.

10.1101/139741 — bioengineering — Posted on 2017-05-18

569 Purification Of The Mammalian NgBR/hCIT cis-Prenyltransferase Complex: IdentificationOf A Conserved Carboxyterminal RxG Motif Crucial For Enzymatic Activity

Grabinska, K. A.; Edani, B. H.; Park, E. J.; Kraehling, J. R.; Sessa, B.

10.1101/139675 — biochemistry — Posted on 2017-05-18

570 Molecular Correlate Of Mouse Executive Function. Top-Down And Bottom-Up Information Flows Complementation By Ntng Gene Paralogs

Prosselkov, P.; Zhang, Q.; Goto, H.; Polygalov, D.; McHugh, T. J.; Itohara, S.

10.1101/139444 — animal behavior and cognition — Posted on 2017-05-18

571 Manuscript 101: A Data-Driven Writing Exercise For Beginning Scientists

Halbisen, M. A.; Ralston, A.

10.1101/139204 — scientific communication and education — Posted on 2017-05-18

572 Percentage-Based Author Contribution Index. A Universal Measure Of Author Contribution To Scientific Articles

Boyer, S.; Ikeda, T.; Lefort, M.-C.; Malumbres-Olarte, J.; Schmidt, J. M.

10.1101/138875 — scientific communication and education — Posted on 2017-05-18

573 Zfp423, A Joubert Syndrome Gene, Is A Domain-Specific Regulator Of Cell Cycle Progression, DNA Damage Response And Purkinje Cell Development In The Cerebellar Primordium

Casoni, F.; Croci, L.; Bosone, C.; D'Ambrosio, R.; Badaloni, A.; Gaudesi, D.; Barili, V.; Sarna, J. R.; Tessarollo, L.; Cremona, O.; Hawkes, R.; Warming, S.; Consalez, G. G.

10.1101/139691 — neuroscience — Posted on 2017-05-18

574 Quantitative MRI Provides Markers Of Intra-, Inter-Regional, And Age-Related Differences In Young Adult Cortical Microstructure

Carey, D.; Caprini, F.; Allen, M.; Lutti, A.; Weiskopf, N.; Rees, G.; Callaghan, M. F.; Dick, F.

10.1101/139568 — neuroscience — Posted on 2017-05-18

575 NMR Analysis Of The Interaction Of Ethanol With The Nicotinic Acetylcholine Receptor

Naugler, D.; Cushley, R. J.; Clark-Lewis, I.

10.1101/139717 — molecular biology — Posted on 2017-05-18

576 Enhanced Guide-RNA Design And Targeting Analysis For Precise CRISPR Genome Editing Of Single And Consortia Of Industrially Relevant And Non-Model Organisms

Mendoza, B.; Trinh, C. T.

10.1101/139626 — bioinformatics — Posted on 2017-05-18

577 Cohesin Loss Eliminates All Loop Domains, Leading To Links Among Superenhancers And Downregulation Of Nearby Genes

Rao, S.; Huang, S.-C.; Glenn St. Hilaire, B.; Engreitz, J. M.; Perez, E. M.; Kieffer-Kwon, K.-R.; Sanborn, A. L.; Johnstone, S. E.; Bochkov, I. D.; Huang, X.; Shamim, M. S.; Omer, A. D.; Bernstein, B. E.; Casellas, R.; Lander, E. S.; Lieberman Aiden, E.

10.1101/139782 — genomics — Posted on 2017-05-18

578 Natural Chromatin Is Heterogeneous And Self Associates In Vitro

Cai, S.; Song, Y.; Chen, C.; Shi, J.; Gan, L.

10.1101/139543 — cell biology — Posted on 2017-05-18

579 Eye-movement reinstatement and neural reactivation during mental imagery

Bone, M. B.; St-Laurent, M.; Dang, C.; McQuiggan, D. A.; Ryan, J. D.; Buchsbaum, B. R.

10.1101/107953 — neuroscience — Posted on 2017-05-18

580 Brucella abortus induces a Warburg shift in host metabolism that is linked to enhanced intracellular survival of the pathogen

Czyz, D. M.; Willett, J.; Crosson, S.

10.1101/120527 — microbiology — Posted on 2017-05-18

581 A conserved signaling network monitors delivery of sphingolipids to the plasma membrane in budding yeast

Clarke, J. C.; Dephoure, N.; Horecka, I.; Gygi, S.; Kellogg, D.

10.1101/105841 — cell biology — Posted on 2017-05-18

582 Integrative Structural Brain Network Analysis In Diffusion Tensor Imaging

Chung, M. K.; Hanson, J. L.; Adluru, N.; Alexander, A. L.; Davidson, R. J.; Pollak, S. D.

10.1101/129015 — neuroscience — Posted on 2017-05-18

583 A horizontally transferred autonomous Helitron became a full polydnavirus segment in Cotesia vestalis

Heringer, P.; Dias, G. B.; Kuhn, G. C. S.

10.1101/132399 — genomics — Posted on 2017-05-18

584 Excretion through digestive tissues predates the evolution of excretory organs

Andrikou, C.; Thiel, D.; Ruiz-Santiesteban, J. A.; Hejnol, A.

10.1101/136788 — evolutionary biology — Posted on 2017-05-18

585 Semblance Of Heterogeneity In Collective Cell Migration

Schumacher, L. J.; Maini, P. K.; Baker, R. E.

10.1101/122374 — systems biology — Posted on 2017-05-18

586 The population genetics of human disease: the case of recessive, lethal mutations

Guerra Amorim, C. E.; Gao, Z.; Baker, Z.; Diesel, J. F.; Simons, Y. B.; Haque, I. S.; Pickrell, J.; Przeworski, M.

10.1101/091579 — genetics — Posted on 2017-05-18

587 Encoding variable cortical states with short-term spikepatterns

Telenczuk, B.; Kempter, R.; Curio, G.; Destexhe, A.

10.1101/098210 — neuroscience — Posted on 2017-05-18

588 Shared genetic effects on chromatin and gene expression reveal widespread enhancer priming in immune response

Alasoo, K.; Rodrigues, J.; Mukhopadhyay, S.; Knights, A. J.; Mann, A. L.; Kundu, K.; HIPSCI Consortium, ; Hale, C.; Dougan, G.; Gaffney, D. J.

10.1101/102392 — genomics — Posted on 2017-05-18

589 Detection Of Cooperatively Bound Transcription Factor Pairs Using ChIP-seq Peak Intensities And Expectation Maximization

Datta, V.; Siddharthan, R.; Krishna, S.

10.1101/120113 — genomics — Posted on 2017-05-18

590 Microtubule stabilization drives 3D centrosome migration to initiate primary ciliogenesis

Pitaval, A.; Senger, F.; Letort, G.; Gidrol, X.; Sillibourne, J.; THERY, M.

10.1101/080556 — cell biology — Posted on 2017-05-18

591 Male sex pheromone components in Heliconius butterflies released by the androconia affect female choice

Darragh, K.; Vanjari, S.; Mann, F.; Gonzalez-R, M. F.; Morrison, C. R.; Salazar, C.; Pardo-Diaz, C.; Merrill, R. M.; McMillan, W. O.; Schulz, S.; Jiggins, C. D.

10.1101/033506 — evolutionary biology — Posted on 2017-05-18

592 Reef Fishes Of Praia do Tofo & Praia da Barra, Inhambane, Mozambique

Fordyce, A. J.

10.1101/139261 — zoology — Posted on 2017-05-17

593 A Non-Parametric Bayesian Prior For Causal Inference Of Auditory Streaming

Yates, T.; Larigaldie, N.; Beierholm, U.

10.1101/139188 — neuroscience — Posted on 2017-05-17

594 The Human Visual Cortex Response To Melanopsin-Directed Stimulation Is Accompanied By A Distinct Perceptual Experience

Spitschan, M.; Bock, A.; Ryan, J.; Frazzetta, G.; Brainard, D. H.; Aguirre, G. K.

10.1101/138768 — neuroscience — Posted on 2017-05-17

595 The Cerebellum Does More Than Sensory-Prediction-Error-Based Learning In Sensorimotor Adaptation Tasks

Butcher, P. A.; Ivry, R.; Kuo, S.-H.; Rydz, D.; Krakauer, J. W.; Taylor, J. A.

10.1101/139337 — neuroscience — Posted on 2017-05-17

596 Population Coding Of Conditional Probability Distributions In Dorsal Premotor Cortex

Glaser, J. I.; Perich, M. G.; Ramkumar, P.; Miller, L. E.; Kording, K. P.

10.1101/137026 — neuroscience — Posted on 2017-05-17

597 Reconstruction of body mass evolution in the Cetartiodactyla and mammals using phylogenomic data.

Figuet, E.; Ballenghien, M.; Lartillot, N.; Galtier, N.

10.1101/139147 — evolutionary biology — Posted on 2017-05-17

598 Body Size Shifts Influence Effects Of Increasing Temperatures On Ectotherm Metabolism

Riemer, K.; Anderson-Teixeira, K. J.; Smith, F. A.; Harris, D. J.; Ernest, S. K. M.

10.1101/139279 — ecology — Posted on 2017-05-17

599 Genetic Load Makes Cancer Cells More Sensitive To Common Drugs: Evidence From Cancer Cell Line Encyclopedia

Pavel, A. B.; Korolev, K. S.

10.1101/139311 — cancer biology — Posted on 2017-05-17

600 The Mu-Opioid Receptor Gene OPRM1 As A Genetic Marker For Placebo Analgesia

Aslaksen, P. M.; Forsberg, J. T.; Gjerstad, J.

10.1101/139345 — physiology — Posted on 2017-05-17

601 De Novo Assembly And Annotation Of The Eastern Fence Lizard (Sceloporus undulatus ) Transcriptome

Grizante, M. B.; Tollis, M.; Rodriguez, J. J.; Levy, O.; Angilletta, M. J.; Kusumi, K.

10.1101/136069 — genomics — Posted on 2017-05-17

602 Improved Estimation Of SNP Heritability Using Bayesian Multiple-Phenotype Models

Elhezzani, N. S.

10.1101/139162 — genetics — Posted on 2017-05-17

603 Health Status By Gender, Hair Color, And Eye Color: Red-Haired Women Are The Most Divergent

Frost, P.; Kleisner, K.; Flegr, J.

10.1101/139295 — evolutionary biology — Posted on 2017-05-17

604 Bird interactions with drones, from individuals to large colonies

Lyons, M.; Brandis, K.; Callaghan, C.; McCann, J.; Mills, C.; Ryall, S.; Kingsford, R.

10.1101/109926 — ecology — Posted on 2017-05-17

605 A cautionary tale on using tumour growth rate to predict survival

Mistry, H.; Ortega, F.

10.1101/109934 — cancer biology — Posted on 2017-05-17

606 Heterogeneity in the tumour size dynamics differentiates Vemurafenib, Dabrafenib and Trametinib in metastatic melanoma

Mistry, H.; Orrell, D.; Eftimie, R.

10.1101/103366 — cancer biology — Posted on 2017-05-17

607 Extending Chemical Perturbations Of The Ubiquitin Fitness Landscape In A Classroom Setting

Mavor, D.; Barlow, K.; Asarnow, D.; Birman, Y.; Britain, D.; Chen, W.; Green, E. M.; Kenner, L. R.; Mensa, B.; Morinishi, L. S.; Nelson, C. A.; Poss, E. M.; Suresh, P.; Tian, R.; Arhar, T.; Ary, B. E.; Bauer, D. P.; Bergman, I. D.; Brunetti, R. M.; Chio, C. M.; Dai, S. A.; Dickinson, M. S.; Elledge, S.; Hendel, N. L.; Helsell, C. V. M.; Kang, E.; Kern, N.; Khoroshkin, M. S.; Kirkemo, L. L.; Lewis, G. R.; Lou, K.; Marin, W. M.; Maxwell, A. M.; McTigue, P. F.; Meyers-Turnbull, D.; Nagy, T. L.; Natale, A. M.; Oltion, K.; Pourmal, S.; Reder, G. K.; Rettko, N. J.; Rohweder, P. J.; Schwarz, D. M. C.

10.1101/139352 — bioinformatics — Posted on 2017-05-17

608 Diagnostic Yield And Treatment Impact Of Targeted Exome Sequencing In Early-Onset Epilepsy

Demos, M.; Guella, I.; McKenzie, M. B.; Buerki, S. E.; Evans, D. M.; Toyota, E. B.; Boelman, C.; Huh, L. L.; Datta, A.; Michoulas, A.; Selby, K.; Bjornson, B. H.; Horvath, G.; Lopez-Rangel, E.; van Karnebeek, C. D. M.; Salvarinova, R.; Slade, E.; Eydoux, P.; Adam, S.; Van Allen, M. I.; Nelson, T. N.; Bolbocean, C.; Connolly, M. B.; Farrer, M. J.

10.1101/139329 — genetics — Posted on 2017-05-17

609 Modeling Science Trustworthiness Under Publish Or Perish Pressure

Grimes, D. R.; Bauch, C. T.; Ioannidis, J. P. A.

10.1101/139063 — scientific communication and education — Posted on 2017-05-17

610 An Effective Model Of The Retinoic Acid Induced HL-60 Differentiation Program

Tasseff, R. A.; Jensen, H.; Congleton, J.; Dai, W.; Rogers, K.; Sagar, A.; Bunaciu, R.; Yen, A.; Varner, J.

10.1101/138784 — systems biology — Posted on 2017-05-17

611 The Genetic Landscape Of Animal Behavior

York, R.

10.1101/139246 — genomics — Posted on 2017-05-17

612 De Novo Mutations Implicate Novel Genes With Burden Of Rare Variants In Systemic Lupus Erythematosus

Pullabhatla, V.; Roberts, A. L.; Lewis, M. J.; Mauro, D.; Morris, D. L.; Odhams, C. A.; Tombleson, P.; Liljedahl, U.; Vyse, S.; Simpson, M. A.; Sauer, S.; de Rinaldis, E.; Syvanen, A.-C.; Vyse, T. J.

10.1101/139238 — genetics — Posted on 2017-05-17

613 Novel Chemolithotrophic And Anoxygenic Phototrophic Genomes Extracted From Ice-Covered Boreal Lakes

Sinclair, L.; Peura, S.; Hernandez, P.; Schattenhofer, M.; Eiler, A.

10.1101/139212 — ecology — Posted on 2017-05-17

614 Dynein Pulling Forces On Ruptured Nuclei Counteract Lamin-Mediated Nuclear Envelope Repair Mechanisms In Vivo

Penfield, L.; Wysolmerski, B.; Farhadifar, R.; Martinez, M.; Biggs, R.; Wu, H.-Y.; Mauro, M.; Broberg, C.; Needleman, D.; Bahmanyar, S.

10.1101/138693 — developmental biology — Posted on 2017-05-17

615 Intestinal cell kinase regulates chondrocyte proliferation and maturation during skeletal development

Ding, M.; Jin, L.; Xie, L.; Park, S. H.; Tong, Y.; Wu, D.; Fu, Z.; Li, X.

10.1101/139089 — developmental biology — Posted on 2017-05-17

616 Isolation And Characterization Of Key Genes That Promote Flavonoid Accumulation In Purple-Leaf Tea (Camellia sinensis L.)

He, X.; Zhao, X.; Gao, L.; Shi, X.; Dai, X.; Liu, Y.; Xia, T.; Wang, Y.

10.1101/139105 — plant biology — Posted on 2017-05-17

617 Niche Partitioning In Sympatric Populations Of Aquatic Stenotrophomonas Uncovered By Evolutionary Species Delimitation

Ochoa-Sanchez, L. E.; Vinuesa, P.

10.1101/138990 — microbiology — Posted on 2017-05-17

618 Hydrogen Isotope Composition Of Thermoanaerobacterium saccharolyticum Lipids: Comparing Wild Type To A nfn- Transhydrogenase Mutant

Leavitt, W. D.; Murphy, S. J.-L.; Lynd, L. R.; Bradley, A. S.

10.1101/138651 — microbiology — Posted on 2017-05-17

619 Cryo-EM Of A Marseilleviridae Virus Particle Reveals A Large Internal Microassembly

Okamoto, K.; Miyazaki, N.; Reddy, H. K. N.; Hantke, M. F.; Maia, F. R. N. C.; Larsson, D. S. D.; Abergel, C.; Claverie, J.-M.; Hajdu, J.; Murata, K.; Svenda, M.

10.1101/139097 — biophysics — Posted on 2017-05-17

620 High-density superresolution microscopy with an incoherent light source and a conventional epifluorescence microscope setup

Prakash, K.

10.1101/121061 — biophysics — Posted on 2017-05-17

621 Mechanistic Insights Into The Active Site And Allosteric Communication Pathways In Human Nonmuscle Myosin-2C

Chinthalapudi, K.; Heissler, S. M.; Preller, M.; Sellers, J. R.; Manstein, D. J.

10.1101/138891 — biochemistry — Posted on 2017-05-17

622 Dynamic post-transcriptional regulation during embryonic stem cell differentiation

van den Berg, P. R.; Budnik, B.; Slavov, N.; Semrau, S.

10.1101/123497 — systems biology — Posted on 2017-05-17

623 Gene Expression Recovery For Single Cell RNA Sequencing

Huang, M.; Wang, J.; Torre, E.; Dueck, H.; Shaffer, S.; Bonasio, R.; Murray, J.; Raj, A.; Li, M.; Zhang, N. R.

10.1101/138677 — genomics — Posted on 2017-05-17

624 A human huntingtin SNP alters post-translational modification and pathogenic proteolysis of the protein causing Huntington disease

Martin, D. D. O.; Kay, C.; Collins, J. A.; Nguyen, Y. T.; Slama, R. A.; Hayden, M. R.

10.1101/129536 — genetics — Posted on 2017-05-17

625 Polygenic Link Between Blood Lipids And Amyotrophic Lateral Sclerosis

Chen, X.; Yazdani, S.; Piehl, F.; Magnusson, P. K. E.; Fang, F.

10.1101/138156 — genetics — Posted on 2017-05-17

626 Coalescent Processes With Skewed Offspring Distributions And Non-Equilibrium Demography

Matuszewski, S.; Hildebrandt, M. E.; Jensen, J. D.

10.1101/137497 — evolutionary biology — Posted on 2017-05-17

627 Widespread dysregulation of the circadian clock in human cancer

Chen, G.; Hughey, J.

10.1101/130765 — cancer biology — Posted on 2017-05-17

628 GeoDiver: Differential Gene Expression Analysis & Gene-Set Analysis For GEO Datasets

Moghul, I.; Hewapathirana, S.; Nawaz, N.; Rashid, A.; Priebe, M.; Vieira, B.; Smeraldi, F.; Bessant, C.

10.1101/127753 — bioinformatics — Posted on 2017-05-17

629 Theory For Transitions Between Exponential And Stationary Phases: Universal Laws For Lag Time

Himeoka, Y.; Kaneko, K.

10.1101/135665 — systems biology — Posted on 2017-05-17

630 The Nonlinear Relationship Between Sensory And Motor Primitives During Reaching Movements

Hardesty, R. L.; Boots, M. T.; Yakovenko, S.; Gritsenko, V.

10.1101/138859 — neuroscience — Posted on 2017-05-17

631 A Neural Population Mechanism For Rapid Learning

Perich, M. G.; Gallego, J. A.; Miller, L.

10.1101/138743 — neuroscience — Posted on 2017-05-17

632 Insight and Inference for DVARS

Afyouni, S.; Nichols, T. E.

10.1101/125021 — neuroscience — Posted on 2017-05-17

633 Identifying Parameters Of Host Cell Vulnerability During Salmonella Infection By Quantitative Image Analysis And Modeling

Voznica, J.; Gardella, C.; Belotserkovsky, I.; Dufour, A.; Enninga, J.; Stevenin, V.

10.1101/139048 — microbiology — Posted on 2017-05-17

634 Clusternomics: Integrative Context-Dependent Clustering For Heterogeneous Datasets

Gabasova, E.; Reid, J. E.; Wernisch, L.

10.1101/139071 — genomics — Posted on 2017-05-17

635 A Comparison Of Machine Learning And Bayesian Modelling For Molecular Serotyping

Newton, R.; Wernisch, L.

10.1101/138636 — genomics — Posted on 2017-05-17

636 The Stone Age Plague: 1000 years of Persistence in Eurasia

Andrades Valtuena, A.; Mittnik, A.; Key, F. M.; Haak, W.; Allmae, R.; Belinskij, A.; Daubaras, M.; Feldman, M.; Jankauskas, R.; Janković, I.; Massy, K.; Novak, M.; Pfrengle, S.; Reinhold, S.; Šlaus, M.; Spyrou, M. A.; Szecsenyi-Nagy, A.; Torv, M.; Hansen, S.; Bos, K. I.; Stockhammer, P. W.; Herbig, A.; Krause, J.

10.1101/094243 — evolutionary biology — Posted on 2017-05-17

637 New genes and functional innovation in mammals

Villanueva-Canas, J. L.; Ruiz-Orera, J.; Agea, M. I.; Gallo, M.; Andreu, D.; Alba, M. M.

10.1101/090860 — evolutionary biology — Posted on 2017-05-17

638 The burden of dengue and chikungunya in southern coastal Ecuador: Epidemiology, clinical presentation, and phylogenetics from a prospective study in Machala in 2014 and 2015

Stewart-Ibarra, A. M.; Kenneson, A.; King, C. A.; Abbott, M.; Barbachano-Guerrero, A.; Beltran-Ayala, E.; Borbor-Cordova, M. J.; Cardenas, W. B.; Cueva, C.; Finkelstein, J. L.; Lupone, C. D.; Jarman, R. G.; Maljkovic Berry, I.; Mehta, S.; Polhemus, M.; Silva, M.; Ryan, S. J.; Endy, T. P.

10.1101/102004 — epidemiology — Posted on 2017-05-17

639 A Comment On Priors For Bayesian Occupancy Models

Northrup, J. M.; Gerber, B. D.

10.1101/138735 — ecology — Posted on 2017-05-17

640 Protein identification with a binary code, a nanopore, and no proteolysis

Sampath, G.

10.1101/119313 — bioengineering — Posted on 2017-05-17

641 Untargeted Metabolomic Analysis In Naturally Occurring Canine Diabetes Mellitus Identifies Similarities To Human Type 1 Diabetes

O'Kell, A. L.; Garrett, T. J.; Wasserfall, C.; Atkinson, M. A.

10.1101/139113 — systems biology — Posted on 2017-05-17

642 A tale of two cores: a quantitative comparative analysis of the institutional and the open access models for flow research technology platforms

Petrunkina, A.; Schulte, R.

10.1101/138552 — scientific communication and education — Posted on 2017-05-17

643 Environmental Influences On The Mating System Of The Common Morning Glory

Alvarado-Serrano, D. F.; Chang, S.-M.; Baucom, R. S.

10.1101/138982 — plant biology — Posted on 2017-05-17

644 Transcranial alternating current stimulation (tACS) mechanisms and protocols

Tavakoli, A. V.; Yun, K.

10.1101/138834 — neuroscience — Posted on 2017-05-17

645 Removal Of Inhibition Uncovers Latent Movement Preparation Dynamics

Jagadisan, U. K.; Gandhi, N. J.

10.1101/138925 — neuroscience — Posted on 2017-05-17

646 Activity-Dependent Control Of Inhibitory Interneuron Number In The Mammalian Cortex

Denaxa, M.; Neves, G.; Rabinowitz, A.; Kemlo, S.; Liodis, P.; Burrone, J.; Pachnis, V.

10.1101/134916 — neuroscience — Posted on 2017-05-17

647 Local Low Frequency fMRI Synchrony Is A Proxy For The Spatial Extent Of Functional Connectivity

Kirk, G. R.; Dentico, D.; Birn, R.; Adluru, N.; Blumensath, T.; Taylor, B.; Michael, L.; Casanova, M.; Alexander, A.

10.1101/138966 — neuroscience — Posted on 2017-05-17

648 An Aphrodisiac Produced By Vibrio fischeri Stimulates Mating In The Closest Living Relatives Of Animals

Woznica, A.; Gerdt, J. P.; Hulett, R.; Clardy, J.; King, N.

10.1101/139022 — microbiology — Posted on 2017-05-17

649 Revisiting The Ancylostoma caninum Secretome Provides New Information On Hookworm-Host Interactions

Morante, T.; Shepherd, C.; Constantinoiu, C.; Loukas, A.; Sotillo, J.

10.1101/139006 — microbiology — Posted on 2017-05-17

650 High Activity Of Selective Essential Oils Against Stationary Phase Borrelia burgdorferi As A Persister Model

Feng, J.; Zhang, S.; Shi, W.; Zubcevik, N.; Miklossy, J.; Zhang, Y.

10.1101/130898 — microbiology — Posted on 2017-05-17

651 Accuracy, Reproducibility And Bias Of Next Generation Sequencing For Quantitative Small RNA Profiling: A Multiple Protocol Study Across Multiple Laboratories

Giraldez, M. D.; Spengler, R. M.; Etheridge, A.; Godoy, P. M.; Barczak, A. J.; Srinivasan, S.; De Hoff, P. L.; Tanriverdi, K.; Courtright, A.; Lu, S.; Khoory, J.; Rubio, R.; Baxter, D.; Driedonks, T. A. P.; Buermans, H. P. J.; Nolte-'t Hoen, E. N. M.; Jiang, H.; Wang, K.; Ghiran, I.; Wang, Y.; Van Keuren-Jensen, K.; Freedman, J. E.; Woodruff, P. G.; Laurent, L. C.; Erle, D. J.; Galas, D. J.; Tewari, M.

10.1101/113050 — genomics — Posted on 2017-05-17

652 Joint Profiling Of Chromatin Accessibility, DNA Methylation And Transcription In Single Cells

Clark, S. J.; Argelaguet, R.; Kapourani, C.-A.; Stubbs, T. M.; Lee, H. J.; Krueger, F.; Sanguinetti, G.; Kelsey, G.; Marioni, J. C.; Stegle, O.; Reik, W.

10.1101/138685 — genomics — Posted on 2017-05-17

653 Polygenic Link Between Blood Lipids And Amyotrophic Lateral Sclerosis

Chen, X.; Yazdani, S.; Piehl, F.; Magnusson, P. K. E.; Fang, F.

10.1101/138156 — genetics — Posted on 2017-05-17

654 On The Advantages Of Evolutionary Passivity In Fluctuating Environments: Could Sex Be The Preadaptation For The Stability-Based Sorting?

Flegr, J.; Ponizil, P.

10.1101/139030 — evolutionary biology — Posted on 2017-05-17

655 Interdependence, Reflexivity, Fidelity, Impedance Matching, And The Evolution Of Genetic Coding

Carter, C. W.; Wills, P. R.

10.1101/139139 — evolutionary biology — Posted on 2017-05-17

656 An FGF-Driven Coherent Feed-Forward Circuit Patterns The Cardiopharyngeal Mesoderm Of A Simple Chordate In Space And Time

Razy-Krajka, F.; Gravez, B.; Christiaen, L.

10.1101/138701 — developmental biology — Posted on 2017-05-17

657 Towards Selective-Alignment: Producing Accurate And Sensitive Alignments Using Quasi-Mapping

Sarkar, H.; Zakeri, M.; Malik, L.; Patro, R.

10.1101/138800 — bioinformatics — Posted on 2017-05-17

658 Exploiting General Independence Criteria For Network Inference

Verbyla, P.; Desgranges, N.; Richardson, S.; Wernisch, L.

10.1101/138669 — bioinformatics — Posted on 2017-05-17

659 Graph-Guided Assembly For Novel HLA Allele Discovery

Lee, H.; Kingsford, C.

10.1101/138826 — bioinformatics — Posted on 2017-05-17

660 On Growth And Form Of The Distal Air Exchange Surfaces Within The Lung

Warburton, D.; Wigfall, C.; Pollack, H.; Koos, D.; AlAlam, D.; Shi, W.; Fraser, S. E.; Moats, R.

10.1101/138974 — developmental biology — Posted on 2017-05-17

661 A Combined Use Of Intravoxel Incoherent Motion MRI Parameters Can Differentiate Early Stage Hepatitis-B Fibrotic Livers From Healthy Livers

Wang, Y.-X.; Deng, M.; Li, Y.; Huang, H.; Leung, J. C. S.; Chen, W.; Lu, P.-X.

10.1101/138958 — biophysics — Posted on 2017-05-17

662 A Liquid Chromatography-Mass Spectrometry Method For Screening Disulfide Tethering Fragments

Hallenbeck, K. K.; Davies, J.; Merron, C.; Ogden, P.; Renslo, A. R.; Wilson, C.; Arkin, M. R.

10.1101/138941 — biophysics — Posted on 2017-05-17

663 Domino-Like Propagation Of Collective U-Turns In Fish Schools

Lecheval, V.; Jiang, L.; Tichit, P.; Sire, C.; Hemelrijk, C. K.; Theraulaz, G.

10.1101/138628 — animal behavior and cognition — Posted on 2017-05-17

664 Evaluating The Accuracy Of DNA Stable Isotope Probing

Youngblut, N. D.; Buckley, D. H.

10.1101/138719 — microbiology — Posted on 2017-05-17

665 Filopodyan: An Open-Source Pipeline For The Analysis Of Filopodia

Urbančič, V.; Butler, R.; Richier, B.; Peter, M.; Mason, J.; Holt, C. E.; Gallop, J. L.

10.1101/138610 — cell biology — Posted on 2017-05-17

666 The AWSEM-Amylometer: Predicting Amyloid Propensity And Fibril Topology Using An Optimized Folding Landscape Model

Chen, M.; Schafer, N.; Zheng, W.; Wolynes, P. G.

10.1101/138842 — biophysics — Posted on 2017-05-17

667 Poor man's two photon imaging: Scanning Laser Upconversion Microscopy

Sorbello, C.; Etchenique, R.

10.1101/138909 — biophysics — Posted on 2017-05-17

668 RNA polymerases IV and V influence the 3’ boundaries of Polymerase II transcription units in Arabidopsis

McKinlay, A.; Podicheti, R.; Wendte, J. M.; Cocklin, R.; Rusch, D. B.

10.1101/108902 — plant biology — Posted on 2017-05-16

669 A Small RNA Pathway Mediates Global Allelic Dosage In Endosperm

Erdmann, R. M.; Satyaki, P. R. V.; Klosinska, M.; Gehring, M.

10.1101/138750 — plant biology — Posted on 2017-05-16

670 Role Of Chymotrypsin-Like Elastase 1 In Lung Physiology And in α1-Antitrypsin Deficiency

Joshi, R.; Heinz, A.; Fan, Q.; Guo, S.; Monia, B.; Schmelzer, C. E. H.; Weiss, A. S.; Batie, M.; Parameswaran, H.; Varisco, B. M.

10.1101/138776 — physiology — Posted on 2017-05-16

671 Evaluation of ddRADseq for reduced representation metagenome sequencing

Liu, M.; Worden, P.; Monahan, L. G.; DeMaere, M. Z.; Burke, C. M.; Djordjevic, S. P.; Charles, I. G.; Darling, A. E.

10.1101/138883 — genomics — Posted on 2017-05-16

672 Gene Expression Recovery For Single Cell RNA Sequencing

Huang, M.; Wang, J.; Torre, E.; Dueck, H.; Shaffer, S.; Bonasio, R.; Murray, J.; Raj, A.; Li, M.; Zhang, N. R.

10.1101/138677 — genomics — Posted on 2017-05-16

673 Bayesian Integrated Analysis Of Multiple Types Of Rare Variants To Infer Risk Genes For Schizophrenia And Other Neurodevelopmental Disorders

Nguyen, H. T.; Dobbyn, A.; Huckins, L. M.; Ruderfer, D.; Genovese, G.; Fromer, M.; Xu, X.; Buxbaum, J.; Pinto, D.; Hultman, C.; Sklar, P.; Purcell, S. M.; He, X.; Sullivan, P. F.; Stahl, E. A.

10.1101/135293 — genomics — Posted on 2017-05-16

674 Systematic Effects Of mRNA Secondary Structure On Gene Expression And Molecular Function In Budding Yeast

Wang, X.; Li, P.; Gutenkunst, R. N.

10.1101/138792 — genetics — Posted on 2017-05-16

675 Disrupting Pitx1 Regulatory Topology Results In Overtly Normal Limb Development

Sarro, R.; Emera, D.; Uebbing, S.; Dutrow, E. V.; Weatherbee, S. D.; Nottoli, T.; Noonan, J. P.

10.1101/138644 — genetics — Posted on 2017-05-16

676 Translating GWAS Findings Into Therapies For Depression And Anxiety Disorders: Drug Repositioning Using Gene-Set Analyses Reveals Enrichment Of Psychiatric Drug Classes

So, H.-C.

10.1101/132563 — genetics — Posted on 2017-05-16

677 A thermostable Cas9 with increased lifetime in human plasma

Harrington, L.; Paez-Espino, D.; Chen, J. S.; Ma, E.; Staahl, B. T.; Kyrpides, N. C.; Doudna, J. A.

10.1101/138867 — biochemistry — Posted on 2017-05-16

678 Description of a new genus of primitive ants from Canadian amber, with the study of relationships between stem- and crown-group ants (Hymenoptera: Formicidae)

Borysenko, L.

10.1101/051367 — zoology — Posted on 2017-05-16

679 Beyond differences in means: robust graphical methods to compare two groups in neuroscience

Rousselet, G. A.; Pernet, C. R.; Wilcox, R. R.

10.1101/121079 — neuroscience — Posted on 2017-05-16

680 Consensus and conflict among ecological forecasts of Zika virus outbreaks in the United States

Carlson, C. J.; Dougherty, E.; Boots, M.; Getz, W.; Ryan, S.

10.1101/138396 — ecology — Posted on 2017-05-16

681 Aberrant Cortical Activity In Multiple GCaMP6-Expressing Transgenic Mouse Lines

Steinmetz, N. A.; Buetfering, C.; Lecoq, J.; Lee, C. R.; Peters, A. J.; Jacobs, E. A. K.; Coen, P.; Ollerenshaw, D. R.; Valley, M. T.; de Vries, S. E. J.; Garrett, M.; Zhuang, J.; Groblewski, P. A.; Manavi, S.; Miles, J.; White, C.; Lee, E.; Griffin, F.; Larkin, J. D.; Roll, K.; Cross, S.; Nguyen, T. V.; Larsen, R.; Pendergraft, J.; Daigle, T.; Tasic, B.; Thompson, C. L.; Waters, J.; Olsen, S.; Margolis, D. J.; Zeng, H.; Hausser, M.; Carandini, M.; Harris, K. D.

10.1101/138511 — neuroscience — Posted on 2017-05-16

682 Identification of putative G-quadruplex forming sequences in three manatee papillomaviruses

Zahin, M.; Dean, W. L.; Ghim, S.-j.; Joh, J.; Gray, R. D.; Khanal, S.; Bossart, G. D.; Mignucci-Giannoni, A. A.; Rouchka, E. C.; Jenson, A. B.; Chaires, J. B.; Chariker, J. H.

10.1101/138602 — molecular biology — Posted on 2017-05-16

683 Perturbed human sub-networks by Fusobacterium nucleatum candidate virulence proteins

Zanzoni, A.; Spinelli, L.; Braham, S.; Brun, C.

10.1101/094136 — systems biology — Posted on 2017-05-16

684 RNA polymerases IV and V influence the 3’ boundaries of Polymerase II transcription units and pre-mRNA splicing in Arabidopsis

McKinlay, A.; Podicheti, R.; Wendte, J. M.; Cocklin, R.; Pikaard, C. S.; Rusch, D. B.

10.1101/108902 — plant biology — Posted on 2017-05-16

685 Mutations in the pantothenate kinase of the malaria parasite P. falciparum confer resistance or hypersensitivity to diverse pantothenate analogues

Tjhin, E. T.; Spry, C.; Sewell, A. L.; Hoegl, A.; Barnard, L.; Sexton, A. E.; Howieson, V. M.; Maier, A. G.; Creek, D. J.; Strauss, E.; Marquez, R.; Auclair, K.; Saliba, K. J.

10.1101/137182 — pharmacology and toxicology — Posted on 2017-05-16

686 Lewy pathology in Parkinson’s disease consists of a crowded organellar membranous medley

Shahmoradian, S. H.; Genoud, C.; Graff-Meyer, A.; Hench, J.; Moors, T.; Schweighauser, G.; Wang, J.; Goldie, K. N.; Suetterlin, R.; Castano-Diez, D.; Perez-Navarro, P.; Huisman, E.; Ipsen, S.; Ingrassia, A.; de Gier, Y.; Rozemuller, A. J. M.; Da Paepe, A.; Erny, J.; Staempfli, A.; Hoernschemeyer, J.; Grosserueschkamp, F.; Niedieker, D.; El-Mashtoly, S. F.; Quadri, M.; van Ijcken, W. F. J.; Bonifati, V.; Gerwert, K.; Bohrmann, B.; Frank, S.; Britschgi, M.; Stahlberg, H.; van de Berg, W.; Lauer, M. E.

10.1101/137976 — neuroscience — Posted on 2017-05-16

687 Optogenetic characterization of corticotropin-releasing factor pathways in the central nucleus of the amygdala in alcohol dependence

de Guglielmo, G.; Kallupi, M.; Pomrenze, M.; Crawford, E.; Simpson, S.; Schweitzer, P.; Koob, G. F.; Messing, R. O.; George, O.

10.1101/134759 — neuroscience — Posted on 2017-05-16

688 Comparative Genomics Of Apomictic Root-Knot Nematodes: Hybridization, Ploidy, And Dynamic Genome Change

Szitenberg, A.; Salazar-Jaramillo, L.; Blok, V. C.; Laetsch, D. R.; Joseph, S.; Williamson, V. M.; Blaxter, M. L.; Lunt, D. H.

10.1101/136085 — evolutionary biology — Posted on 2017-05-16

689 Comparative Genomics Sheds Light On Niche Differentiation And The Evolutionary History Of Comammox Nitrospira

Palomo, A.; Pedersen, A. G.; Fowler, S. J.; Dechesne, A.; Sicheritz-Ponten, T.; Smets, B. F.

10.1101/138586 — microbiology — Posted on 2017-05-16

690 Negative frequency-dependent selection is frequently confounding

Brisson, D.

10.1101/113324 — evolutionary biology — Posted on 2017-05-16

691 Understanding The Dynamics Of Laboratory Populations Of Drosophila melanogaster: Long-Term Experiments Meet Individual-Based Modelling

Tung, S.; Rajamani, M.; Joshi, A.; Dey, S.

10.1101/138446 — ecology — Posted on 2017-05-16

692 Defocus and magnification dependent variation of TEM image astigmatism

Yan, R.; Li, K.; Jiang, W.

10.1101/138255 — biophysics — Posted on 2017-05-16

693 Enzyme-Free Nucleic Acid Dynamical Systems

Srinivas, N.; Parkin, J.; Seelig, G.; Winfree, E.; Soloveichik, D.

10.1101/138420 — bioengineering — Posted on 2017-05-16

694 Dynamic Allocation Of Orthogonal Ribosomes Facilitates Uncoupling Of Co-Expressed Genes

Darlington, A. P. S.; Kim, J.; Jimenez, J. I.; Bates, D. G.

10.1101/138362 — synthetic biology — Posted on 2017-05-16

695 I Like Coffee With Cream And Dog? Change In An Implicit Probabilistic Representation Captures Meaning Processing In The Brain

Rabovsky, M.; Hansen, S. S.; McClelland, J. L.

10.1101/138149 — neuroscience — Posted on 2017-05-16

696 Aberrant Cortical Activity In Multiple GCaMP6-Expressing Transgenic Mouse Lines

10.1101/138511 — neuroscience — Posted on 2017-05-16

697 Task demands affect spatial reference frame weighting during tactile localization in sighted and congenitally blind adults

Schubert, J. T. W.; Badde, S.; Roeder, B.; Heed, T.

10.1101/056515 — neuroscience — Posted on 2017-05-16

698 A 340/380 nm Light Emitting Diode Illuminator For Fura-2 AM Ratiometric Ca2+ Imaging Of Live Cells With Better Than 5 nM Precision

Tinning, P. W.; Franssen, A. J. P. M.; Hridi, S. U.; Bushell, T. J.; McConnell, G.

10.1101/138495 — neuroscience — Posted on 2017-05-16

699 Post-Transcriptional Control Of EMT Is Coordinated Through Combinatorial Targeting By Multiple microRNAs

Cursons, J.; Pillman, K. A.; Scheer, K.; Gregory, P. A.; Foroutan, M.; Hediyeh Zadeh, S.; Toubia, J.; Crampin, E. J.; Goodall, G. J.; Bracken, C. P.; Davis, M. J.

10.1101/138024 — molecular biology — Posted on 2017-05-16

700 Prediction of fluoroquinolone susceptibility directly from whole genome sequence data using liquid chromatography-tandem mass spectrometry to identify mutant genotypes.

Wan Nur Ismah, W. A. K.; Takebayashi, Y.; Findlay, J.; Heesom, K. J.; Jimenez-Castellanos, J.-C.; Zhang, J.; Graham, L.; Bowker, K.; Williams, M.; MacGowan, A. P.; Avison, M. B.

10.1101/138248 — microbiology — Posted on 2017-05-16

701 Prediction Of Cephalosporin And Carbapenem Susceptibility In Multi-Drug Resistant Gram-Negative Bacteria Using Liquid Chromatography-Tandem Mass Spectrometry

Takebayashi, Y.; Wan Nur Ismah, W. A. K.; Findlay, J.; Heesom, K. J.; Zhang, J.; Williams, M.; MacGowan, A. P.; Avison, M. B.

10.1101/138594 — microbiology — Posted on 2017-05-16

702 Correct And Efficient Initiation Of Viral RNA Synthesis By The Influenza A Virus RNA Polymerase

Oymans, J.; te Velthuis, A.

10.1101/138487 — microbiology — Posted on 2017-05-16

703 Quantitative Seq-LGS: Genome-Wide Identification of Genetic Drivers of Multiple Phenotypes in Malaria Parasites

Abkallo, H. M.; Martinelli, A.; Inoue, M.; Ramaprasad, A.; Xangsayarath, P.; Gitaka, J.; Tang, J.; Yahata, K.; Zoungrana, A.; Mitaka, H.; Hunt, P.; Carter, R.; Kaneko, O.; Mustonen, V.; Illingworth, C. J. R.; Pain, A.; Culleton, R.

10.1101/078451 — genomics — Posted on 2017-05-16

704 Differential Variant Calling In Mutants From Diverse Genetic Backgrounds: A Case Study In The Nematode Pristionchus pacificus

Rodelsperger, C.; Moreno, E.

10.1101/138479 — genetics — Posted on 2017-05-16

Buckley, R. M.; Kortschak, R. D.; Raison, J. M.; Adelson, D. L.

10.1101/091652 — evolutionary biology — Posted on 2017-05-16

706 A Maladaptive Combination Of Traits Contributes To The Maintenance Of A Stable Hybrid Zone Between Two Divergent Species Of Drosophila

Cooper, B. S.; Sedghifar, A.; Nash, W. T.; Comeault, A. A.; Matute, D. R.

10.1101/138388 — evolutionary biology — Posted on 2017-05-16

707 Migration Harshness Drives Habitat Choice And Local Adaptation In Anadromous Arctic Char: Evidence From Integrating Population Genomics And Acoustic Telemetry

Moore, J.-S.; Harris, L. N.; Le Luyer, J.; Sutherland, B. J. G.; Rougemont, Q.; Tallman, R. F.; Fisk, A. T.; Bernatchez, L.

10.1101/138545 — evolutionary biology — Posted on 2017-05-16

708 Modeling the consequences of regional heterogeneity in human papillomavirus (HPV) vaccination uptake on transmission in Switzerland

Riesen, M.; Garcia, V.; Low, N.; Althaus, C. L.

10.1101/125518 — epidemiology — Posted on 2017-05-16

709 Unbiased Emission Factor Estimators For Large Scale Forest Inventories: Domain Assessment Techniques

Birigazzi, L.; Gamarra, J. G. P.; Gregoire, T. G.

10.1101/138131 — ecology — Posted on 2017-05-16

710 A Theory That Predicts Behaviors Of Disordered Cytoskeletal Networks

Belmonte, J.; Leptin, M.; Nedelec, F.

10.1101/138537 — cell biology — Posted on 2017-05-16

711 speaq 2.0: A Wavelet-Based Workflow For High-Throughput 1D NMR Spectra Processing And Quantification

Beirnaert, C.; Meysman, P.; Vu, T. N.; Hermans, N.; Apers, S.; Pieters, L.; Covaci, A.; Laukens, K.

10.1101/138503 — bioinformatics — Posted on 2017-05-16

712 wft4galaxy: A Workflow Tester for Galaxy

Piras, M. E.; Pireddu, L.; Zanetti, G.

10.1101/132001 — bioinformatics — Posted on 2017-05-16

713 Predicting Protein Producibility In Filamentous Fungi

Dykstra, K.; Rousu, J.; Arvas, M.

10.1101/138560 — bioinformatics — Posted on 2017-05-16

714 MetaMeta: Integrating Metagenome Analysis Tools To Improve Taxonomic Profiling

Piro, V. C.; Matschkowski, M.; Renard, B. Y.

10.1101/138578 — bioinformatics — Posted on 2017-05-16

715 A Point Of No Return Leading To Death During Heat-Shock In C. elegans

Jovic, K.; Sterken, M. G.; Grilli, J.; Bevers, R. P. J.; Rodriguez, M.; Riksen, J. A. G.; Allesina, S.; Kammenga, J. E.; Snoek, L. B.

10.1101/135988 — genomics — Posted on 2017-05-16

716 Molecular Mechanisms Of Human Papillomavirus-Related Carcinogenesis In Head And Neck Cancer

Faraji, F.; Zaidi, M.; Fakhry, C.; Gaykalova, D. A.

10.1101/137653 — molecular biology — Posted on 2017-05-16

717 Geometrical confinement guides Brachyury self-patterning in embryonic stem cells.

Blin, G.; Picart, C.; Thery, M.; Puceat, M.

10.1101/138354 — developmental biology — Posted on 2017-05-16

718 The Neural System of Metacognition Accompanying Decision-Making in The Prefrontal Cortex

Wan, X.; Qiu, L.; Su, J.; Ni, Y.; Bai, Y.; Li, X.

10.1101/135772 — neuroscience — Posted on 2017-05-15

719 Inferring Genetic Interactions From Comparative Fitness Data

Crona, K.; Gavryushkin, A.; Greene, D.; Beerenwinkel, N.

10.1101/137372 — evolutionary biology — Posted on 2017-05-15

720 The Oropharynx As A Distinct Colonization Site For Staphylococcus aureus In The Community

Hanson, B. M.; Kates, A. E.; Mills, E.; Herwaldt, L. A.; Torner, J. C.; Dawson, J. D.; Smith, T. C.

10.1101/137901 — epidemiology — Posted on 2017-05-15

721 Social-Ecological Factors And Preventive Actions Decrease The Risk Of Dengue Infection At The Household-Level: Results From A Prospective Dengue Surveillance Study In Machala, Ecuador

Kenneson, A.; Beltran-Ayala, E.; Borbor-Cordova, M. J.; Polhemus, M. E.; Ryan, S.; Endy, T. P.; Stewart-Ibarra, A.

10.1101/136382 — epidemiology — Posted on 2017-05-15

722 HIV Transmission Efficiency Through Contaminated Injections In Roka, Cambodia

Gisselquist, D.

10.1101/136135 — epidemiology — Posted on 2017-05-15

723 Are Your Covariates Under Control? How Normalization Can Re-introduce Covariate Effects

Pain, O.; Dudbridge, F.; Ronald, A.

10.1101/137232 — epidemiology — Posted on 2017-05-15

724 Gravitational Signals Underlie Tonic Muscle Activity During Goal-Directed Reaching

Olesh, E.; Pollard, B.; Gritsenko, V.

10.1101/138263 — neuroscience — Posted on 2017-05-15

725 The Neural Representation Of Personally Familiar And Unfamiliar Faces In The Distributed System For Face Perception

Visconti di Oleggio Castello, M.; Halchenko, Y. O.; Guntupalli, J. S.; Gors, J. D.; Gobbini, M. I.

10.1101/138297 — neuroscience — Posted on 2017-05-15

726 The effect of treatment on the microbiota of patients diagnosed with colonic lesions

Sze, M. A.; Baxter, N. T.; Ruffin, M. T.; Rogers, M. A.; Schloss, P. D.

10.1101/138222 — microbiology — Posted on 2017-05-15

727 Mitochondrial Genetic Effects On Reproductive Success: Signatures Of Positive Intra-Sexual, But Negative Inter-Sexual Pleiotropy

Camus, M. F.; Dowling, D. K.

10.1101/138180 — evolutionary biology — Posted on 2017-05-15

728 A Balance Between Regulatory Constraints And Pathogen Pressure Shapes The Evolution Of Innate Immunity

Hagai, T.; Chen, X.; Miragaia, R. J.; Gomes, T.; Rostom, R.; Kunowska, N.; Proserpio, V.; Donati, G.; Bossini-Castillo, L.; Naamati, G.; Emerton, G.; Trynka, G.; Kondova, I.; Denis, M.; Teichmann, S.

10.1101/137992 — evolutionary biology — Posted on 2017-05-15

729 Integrating Planar Polarity And Tissue Mechanics In Computational Models Of Epithelial Morphogenesis

Fisher, K. H.; Strutt, D.; Fletcher, A. G.

10.1101/138172 — systems biology — Posted on 2017-05-15

730 Predicting Drug Resistance Evolution: Antimicrobial Peptides Vs. Antibiotics

Yu, G.; Baeder, D.; Regoes, R.; Rolff, J.

10.1101/138107 — evolutionary biology — Posted on 2017-05-15

731 Ascorbate Concentration In Arabidopsis thaliana And Expression Of Ascorbate Related Genes Using RNAseq In Response To Light And The Diurnal Cycle

Laing, W.; Norling, C.; Brewster, D.; Wright, M.; Bulley, S.

10.1101/138008 — plant biology — Posted on 2017-05-15

732 Pupil Size Asymmetries Are Modulated By An Interaction Between Attentional Load And Task Experience

Wahn, B.; Ferris, D. P.; Hairston, W. D.; Konig, P.

10.1101/137893 — neuroscience — Posted on 2017-05-15

733 Yeasts Dominate Soil Fungal Communities In Three Lowland Neotropical Rainforests

Dunthorn, M.; Kauserud, H.; Bass, D.; Mayor, J.; Mahe, F.

10.1101/138057 — microbiology — Posted on 2017-05-15

734 KKL-35 Exhibits Potent Antibiotic Activity Against Legionella Species Independently Of Trans-Translation Inhibition

Brunel, R.; Descours, G.; Doublet, P.; Jarraud, S.; Charpentier, X.

10.1101/135798 — microbiology — Posted on 2017-05-15

735 Bifunctionality Of A Biofilm Matrix Protein Controlled By Redox State

Arnaouteli, S.; Ferreira, A. S.; Schor, M.; Morris, R. J.; Bromley, K. M.; Jo, J. K.; Cortez, K. L.; Sukhodub, T.; Prescott, A. R.; Dietrich, L. E. P.; MacPhee, C. E.; Stanley-Wall, N.

10.1101/138099 — microbiology — Posted on 2017-05-15

736 High-Quality Rice RNA-Seq-Based Co-Expression Network For Predicting Gene Function And Regulation

Yu, H.; Jiao, B.; Liang, C.

10.1101/138040 — bioinformatics — Posted on 2017-05-15

737 Rainbowfish: A Succinct Colored de Bruijn Graph Representation

Almodaresi, F.; Pandey, P.; Patro, R.

10.1101/138016 — bioinformatics — Posted on 2017-05-15

738 Sim3C: Simulation Of HiC And Meta3C Proximity Ligation Sequencing Technologies

DeMaere, M. Z.; Darling, A. E.

10.1101/134452 — bioinformatics — Posted on 2017-05-15

739 Adjudicating between face-coding models with individual-face fMRI responses

Carlin, J. D.; Kriegeskorte, N.

10.1101/029603 — neuroscience — Posted on 2017-05-15

740 Multiplexing droplet-based single cell RNA-sequencing using natural genetic barcodes

Kang, H. M.; Subramaniam, M.; Targ, S.; Nguyen, M.; Maliskova, L.; Wan, E.; Wong, S.; Byrnes, L.; Lanata, C.; Gate, R.; Mostafavi, S.; Marson, A.; Zaitlen, N.; Criswell, L. A.; Ye, J.

10.1101/118778 — bioinformatics — Posted on 2017-05-15

741 Plant miRNA Regulation Is Environmentally And Developmentally-Sensitive

von Born, P.; Rubio-Somoza, I.

10.1101/136762 — plant biology — Posted on 2017-05-15

742 Multichannel Sleep Spindle Detection Using Sparse Low-Rank Optimization

Parekh, A.; Selesnick, I.; Osorio, R. S.; Varga, A. W.; Rapoport, D. M.; Ayappa, I.

10.1101/104414 — neuroscience — Posted on 2017-05-15

743 CRISPR/Cas9 screening using unique molecular identifiers

Schmierer, B.; Botla, S. K.; Zhang, J.; Turunen, M.; Kivioja, T.; Taipale, J.

10.1101/114355 — genomics — Posted on 2017-05-15

744 Linking the development and functioning of a carnivorous pitcher plant’s microbial digestive community

Armitage, D. W.

10.1101/090225 — ecology — Posted on 2017-05-15

745 Brain Development: Machine Learning Analysis Of Individual Stem Cells In Live 3D Tissue

Hailstone, M.; Yang, L.; Waithe, D.; Samuels, T. J.; Arava, Y.; Dobrzycki, T.; Parton, R. M.; Davis, I.

10.1101/137406 — developmental biology — Posted on 2017-05-15

746 The heritability of pathogen traits - definitions and estimators

Mitov, V.; Stadler, T.

10.1101/058503 — genetics — Posted on 2017-05-15

747 Uncovering The Drivers Of Animal-Host Microbiotas With Joint Distribution Modeling

Bjork, J. R.; Hui, F. K. C.; O'Hara, R. B.; Montoya, J. M.

10.1101/137943 — microbiology — Posted on 2017-05-15

748 Automated Recommendation Of Metabolite Substructures From Mass Spectra Using Frequent Pattern Mining

Mrzic, A.; Meysman, P.; Bittremieux, W.; Laukens, K.

10.1101/134189 — bioinformatics — Posted on 2017-05-15

749 Payoff-biased social learning underlies the diffusion of novel extractive foraging traditions in a wild primate

Barrett, B. J.; McElreath, R.; Perry, S.

10.1101/110221 — animal behavior and cognition — Posted on 2017-05-15

750 Quantitative Seq-LGS: Genome-Wide Identification of Genetic Drivers of Multiple Phenotypes in Malaria Parasites

Abkallo, H.; Martinelli, A.; Inoue, M.; Ramaprasad, A.; Xangsayarath, P.; Gitaka, J.; Tang, J.; Yahata, K.; Zoungrana, A.; Mitaka, H.; Hunt, P.; Carter, R.; Kaneko, O.; Mustonen, V.; Illingworth, C. J.; Pain, A.; Culleton, R.

10.1101/078451 — genomics — Posted on 2017-05-15

751 The white gene controls copulation success in Drosophila melanogaster

Xiao, C.; Qiu, S.; Robertson, R. M.

10.1101/072710 — animal behavior and cognition — Posted on 2017-05-15

752 Uncovering The Drivers Of Animal-Host Microbiotas With Joint Distribution Modeling

Bjork, J. R.; Hui, F. K. C.; O'Hara, R. B.; Montoya, J. M.

10.1101/137943 — microbiology — Posted on 2017-05-14

753 In depth analysis of kinase cross screening data to identify chemical starting points for inhibition of the Nek family of kinases

Wells, C. I.; Kapadia, N. R.; Counago, R. M.; Drewry, D. H.

10.1101/137968 — pharmacology and toxicology — Posted on 2017-05-14

754 Inverse correlation processing by neurons with active dendrites

Gorski, T.; Veltz, R.; Galtier, M.; Fragnaud, H.; Telenczuk, B.; Destexhe, A.

10.1101/137984 — neuroscience — Posted on 2017-05-14

755 Mechanical Activation Of Piezo1 But Not Nav1.2 Channels By Ultrasound

Prieto, M. L.; Firouzi, K.; Khuri-Yakub, B. T.; Maduke, M.

10.1101/136994 — neuroscience — Posted on 2017-05-14

756 Accumulation And Functional Architecture Of Deleterious Genetic Variants During The Extinction Of Wrangel Island Mammoths

Fry, E.; Kim, S. K.; Chigurapti, S.; Mika, K. M.; Ratan, A.; Dammermann, A.; Mitchell, B. J.; Miller, W.; Lynch, V. J.

10.1101/137455 — genetics — Posted on 2017-05-14

757 Beneficial Effects Of Ketogenic Diets For Cancer Patients - A Realist Review With Focus On Evidence And Confirmation

Klement, R. J.

10.1101/137950 — cancer biology — Posted on 2017-05-14

758 Uncovering The Drivers Of Animal-Host Microbiotas With Joint Distribution Modeling

Bjork, J. R.; Hui, F. K. C.; O'Hara, R. B.; Montoya, J. M.

10.1101/137943 — microbiology — Posted on 2017-05-14

759 The Dynamic Core Microbiome: Structure, Stability And Resistance

Bjork, J. R.; O'Hara, R. B.; Ribes, M.; Coma, R.; Montoya, J. M.

10.1101/137885 — ecology — Posted on 2017-05-14

760 Brain Development: Machine Learning Analysis Of Individual Stem Cells In Live 3D Tissue

Hailstone, M.; Yang, L.; Waithe, D.; Samuels, T. J.; Arava, Y.; Dobrzycki, T.; Parton, R. M.; Davis, I.

10.1101/137406 — developmental biology — Posted on 2017-05-14

761 Aminoglycoside Antibiotics Perturb Physiologically Important MicroRNA Contributing To Drug Toxicity

Jayaraj, G.; Ramasamy, S.; Bose, D.; Suryawanshi, H.; Lalwani, M.; Sivasubbu, S.; Maiti, S.

10.1101/137935 — cell biology — Posted on 2017-05-14

762 Cellular Adaptation Through Fitness-Directed Transcriptional Tuning

Freddolino, P. L.; Yang, J.; Tavazoie, S.

10.1101/137810 — systems biology — Posted on 2017-05-14

763 Expression Of Pokeweed Antiviral Protein Isoform S1 (PAP-S1) And Of Ricin-A-Chain/PAP-S1 Novel Fusion Protein (RTA/PAP-S1) In Escherichia coli And Their Comparative Inhibition Of Protein Synthesis In Vitro

Hassan, Y.; Ogg, S.

10.1101/137919 — synthetic biology — Posted on 2017-05-14

764 Rational Design Of RNA Structures That Predictably Tune Eukaryotic Gene Expression

Weenink, T.; McKiernan, R. M.; Ellis, T.

10.1101/137877 — synthetic biology — Posted on 2017-05-14

765 Over-Expression Of The RieskeFeS Protein Increases Electron Transport Rates And Yield In Arabidopsis

Simkin, A.; McAusland, L.; Lawson, T.; Raines, C. A.

10.1101/133702 — plant biology — Posted on 2017-05-14

766 An Oomycete Effector Protein Induces Shade Avoidance In Arabidopsis And Attenuates Salicylate Signaling By Binding To Host Proteins Of The RADICAL-INDUCED CELL DEATH1 Family

Wirthmueller, L.; Asai, S.; Rallapalli, G.; Sklenar, J.; Fabro, G.; Kim, D. S.; Lintermann, R.; Jaspers, P.; Wrzaczek, M.; Kangasjarvi, J.; MacLean, D.; Menke, F. L. H.; Banfield, M. J.; Jones, J. D. G.

10.1101/137844 — plant biology — Posted on 2017-05-14

767 Revisiting Chemoaffinity Theory: Chemotactic Implementation Of Topographic Axonal Projection

Naoki, H.

10.1101/136291 — neuroscience — Posted on 2017-05-14

768 The Algorithmic Neuroanatomy Of Action-Outcome Learning

Morris, R. W.; Dezfouli, A.; Griffiths, K. R.; Le Pelley, M. E.; Balleine, B. W.

10.1101/137851 — neuroscience — Posted on 2017-05-14

769 Sex Chromosome Dosage Effects On Gene Expression In Humans

Raznahan, A.; Parikshak, N.; Chandran, V.; Blumenthal, J.; Clasen, L.; Alexander-Bloch, A.; Zinn, A.; Wangsa, D.; Wise, J.; Murphy, D.; Bolton, P.; Ried, T.; Ross, J.; Giedd, J.; Geschwind, D.

10.1101/137752 — genomics — Posted on 2017-05-14

770 Learning Structural Motif Representations For Efficient Protein Structure Search

Liu, Y.; Ye, Q.; Wang, L.; Peng, J.

10.1101/137828 — bioinformatics — Posted on 2017-05-14

771 Intercellular mRNA Trafficking Via Membrane Nanotubes In Mammalian Cells

Haimovich, G.; Ecker, C. M.; Dunagin, M. C.; Eggan, E.; Raj, A.; Gerst, J. E.; Singer, R. H.

10.1101/137836 — cell biology — Posted on 2017-05-14

772 Analysis Of Interphase Node Proteins In Fission Yeast By Quantitative And Super Resolution Fluorescence Microscopy

Akamatsu, M.; Lin, Y.; Bewersdorf, J.; Pollard, T. D.

10.1101/137794 — cell biology — Posted on 2017-05-14

773 Loss Of PTEN Promotes Formation Of Signaling-Specific Clathrin-Coated Pits

Rosselli-Murai, L. K.; Yates, J. A.; Yoshida, S.; Bourg, J. T.; Ho, K. K. Y.; White, M.; Prisby, J.; Tan, X.; Altemus, M.; Bao, L.; Wu, Z.-F.; Veatch, S. L.; Swanson, J. A.; Merajver, S. D.; Liu, A. P.

10.1101/137760 — cell biology — Posted on 2017-05-14

774 Conformational Dynamics In TRPV1 Channels Reported By An Encoded Coumarin Amino Acid

Steinberg, X.; Kasimova, M. A.; Cabezas-Bratesco, D.; Galpin, J.; Ladron de Guevara, E.; Villa, F.; Carnevale, V.; Islas, L. D.; Ahern, C. A.; Brauchi, S. E.

10.1101/137778 — biophysics — Posted on 2017-05-14

775 Space use and movement of jaguar (Panthera onca) in western Paraguay

McBride, R. T.; Thompson, J. J.

10.1101/119412 — ecology — Posted on 2017-05-14

776 A Rationally Designed Aminoacyl-tRNA Synthetase for Genetically EncodedFluorescent Amino Acids

Steinberg, X.; Galpin, J.; Nasir, G.; Sepulveda-Ugarte, J.; Sepulveda, R.; Gonzalez-Nilo, F.; Islas, L. D.; Ahern, C. A.; Brauchi, S. E.

10.1101/065227 — biochemistry — Posted on 2017-05-14

777 Covalent Protein Labeling By SpyTag-SpyCatcher In Fixed Cells For Super-Resolution Microscopy

Pessino, V.; Citron, Y. R.; Feng, S.; Huang, B.

10.1101/125013 — biochemistry — Posted on 2017-05-14

778 A Model For Adult Organ Resizing Demonstrates Stem Cell Scaling Through A Tunable Commitment Rate

Du, X.; O'Brien, L. E.; Riedel-Kruse, I.

10.1101/137638 — systems biology — Posted on 2017-05-13

779 Agonist-Dependent And -Independent Kappa Opioid Receptor Phosphorylation Showed Distinct Phosphorylation Patterns And Resulted In Different Cellular Outcomes

Chiu, Y.-T.; Chen, C.; Schulz, S.; Liu-Chen, L.-Y.

10.1101/137570 — pharmacology and toxicology — Posted on 2017-05-13

780 Learning to see again: Biological constraints on cortical plasticity and the implications for sight restoration technologies

Beyeler, M.; Rokem, A.; Boynton, G. M.; Fine, I.

10.1101/115188 — neuroscience — Posted on 2017-05-13

781 A Tunable Protein Oscillator Controls Directional Movements In Myxococcus xanthus

Guzzo, M.; Murray, S. M.; Martineau, E.; Lhospice, S.; Baronian, G.; My, L.; Zhang, Y.; Espinosa, L.; Vincentelli, R.; Bratton, B. P.; Shaevitz, J. W.; Molle, V.; Howard, M.; Mignot, T.

10.1101/137695 — microbiology — Posted on 2017-05-13

782 The transcriptome of proteostasis perturbations reveal non-optimal response in chaperone networks

Ghosh, A.; Gangadharan, A.; Das, S.; Verma, M.; Dash, D.; Mapa, K.; Chakraborty, K.

10.1101/137349 — genetics — Posted on 2017-05-13

783 Experimental Evolution Of Insect Immune Memory Vs. Pathogen Resistance

Khan, I.; Prakash, A.; Agashe, D.

10.1101/137703 — evolutionary biology — Posted on 2017-05-13

784 Tacrolimus Rescues Endothelial ALK1 Loss-Of-Function Signaling And Improves HHT Vascular Pathology

Ruiz, S.; Chandakkar, P.; Zhao, H.; Papoin, J.; Chatterjee, P. K.; Christen, E.; Metz, C. N.; Blanc, L.; Campagne, F.; Marambaud, P.

10.1101/137737 — cell biology — Posted on 2017-05-13

785 The Condensin Complex Is A Mechanochemical Motor That Translocates Along DNA

Terekawa, T.; Bisht, S.; Eeftens, J.; Dekker, C.; Haering, C.; Greene, E.

10.1101/137711 — biophysics — Posted on 2017-05-13

786 A Simple Representation Of Three-Dimensional Molecular Structure

Axen, S. D.; Huang, X.-P.; Caceres, E. L.; Gendelev, L.; Roth, B. L.; Keiser, M. J.

10.1101/136705 — bioinformatics — Posted on 2017-05-13

787 Integrated Computing And Tracking System For Centralized High-Throughput Genetic Analysis: A Case Study

Stilp, A. M.; Gogarten, S. M.; Laurie, C. C.; Sofer, T.

10.1101/137596 — bioinformatics — Posted on 2017-05-13

788 Quantitative Models Identify Histone Signatures Of Poised Genes Prior To Cellular Differentiation

Tian, R.

10.1101/137646 — bioinformatics — Posted on 2017-05-13

789 Deciphering HLA-I motifs across HLA peptidomes improves neo-antigen predictions and identifies allostery regulating HLA specificity

Bassani-Sternberg, M.; Chong, C.; Guillaume, P.; Solleder, M.; Pak, H.; Gannon, P. O.; Kandalaft, L. E.; Coukos, G.; Gfeller, D.

10.1101/098780 — bioinformatics — Posted on 2017-05-13

790 Physiological Assembly Of Functionally Active 30S Ribosomal Subunits From In Vitro Synthesized Parts

Li, J.; Wassie, B.; Church, G. M.

10.1101/137745 — biochemistry — Posted on 2017-05-13

791 Role Of Competition In The Strain Structure Of Rotavirus Under Invasion And Reassortment

Zinder, D.; Riolo, M. A.; Woods, R. J.; Pascual, M.

10.1101/137661 — evolutionary biology — Posted on 2017-05-13

792 RNase reverses segment sequence in the anterior of a beetle egg (Callosobruchus maculatus, Coleoptera)

van der Meer, J. M.

10.1101/059162 — developmental biology — Posted on 2017-05-13

793 Role Of The Membrane Cholesterol-Glycosphingolipid Complex As A Transistor To Regulate GSL Receptor Function And Signaling Of Both Lipids

Novak, A.; Lingwood, C. A.

10.1101/137612 — cell biology — Posted on 2017-05-13

794 Responses To Mechanically And Visually Cued Water Waves In The Nervous System Of The Medicinal Leech

Lehmkuhl, A. M.; Muthusamy, A.; Wagenaar, D. A.

10.1101/137588 — neuroscience — Posted on 2017-05-13

795 Coalescent Processes With Skewed Offspring Distributions And Non-Equilibrium Demography

Matuszewski, S.; Hildebrandt, M. E.; Jensen, J. D.

10.1101/137497 — evolutionary biology — Posted on 2017-05-13

796 A method to assess significant differences in RNA expression among specific gene groups

He, M.; Liu, P.; Lawrence-Dill, C. J.

10.1101/136143 — bioinformatics — Posted on 2017-05-12

797 Prominent Lateral Spread Of Imaged Evoked Activity Beyond Cortical Columns In Barrel Cortex Provides Foundation For Coding Whisker Identity

Jacobs, N. S.; Frostig, R. D.

10.1101/137562 — neuroscience — Posted on 2017-05-12

798 Population Genomics Of Cryptococcus neoformans var. grubii Reveals New Biogeographic Relationships And Finely Maps Hybridization

Rhodes, J.; Desjardins, C. A.; Sykes, S. M.; Beale, M. A.; Vanhove, M.; Sakthikumar, S.; Chen, Y.; Gujja, S.; Saif, S.; Chowdhary, A.; Lawson, D. J.; Ponzio, V.; Colombo, A. L.; Meyer, W.; Engelthaler, D.; Hagen, F.; Illnait-Zaragozi, M. T.; Alanio, A.; Vreulink, J.-M.; Heitman, J.; Perfect, J. R.; Litvintseva, A.; Bicanic, T.; Harrison, T. S.; Fisher, M. C.; Cuomo, C. A.

10.1101/132894 — genomics — Posted on 2017-05-12

799 Drosophila Mutants that Are Motile but Respond Poorly to All Stimuli Tested

Vang, L. L.; Adler, J.

10.1101/066423 — animal behavior and cognition — Posted on 2017-05-12

800 Deep learning of the regulatory grammar of yeast 5’ untranslated regions from 500,000 random sequences

Cuperus, J. T.; Groves, B.; Kuchina, A.; Rosenberg, A. B.; Jojic, N.; Fields, S.; Seelig, G.

10.1101/137547 — synthetic biology — Posted on 2017-05-12

801 Behavioural Outcomes Of Adult Female Offspring Following Maternal Stress And Perinatal Fluoxetine Exposure

Kiryanova, V.; Meunier, S.; Dyck, R.

10.1101/137414 — neuroscience — Posted on 2017-05-12

802 Multiple Poliovirus-Induced Organelles Suggested By Comparison Of Spatiotemporal Dynamics Of Membranous Structures And Phosphoinositides

Oh, H. S.; Banerjee, S.; Aponte-Diaz, D.; Aligo, J.; Lodeiro, M. F.; Cameron, C. E.

10.1101/135509 — molecular biology — Posted on 2017-05-12

803 The Core Transcriptome Of Mammalian Placentas And The Divergence Of Expression With Placental Shape

Armstrong, D. L.; McGowen, M. R.; Weckle, A.; Pantham, P.; Caravas, J.; Agnew, D.; Benirschke, K.; Savage-Rumbaugh, S.; Nevo, E.; Kim, C. J.; Wagner, G. P.; Romero, R.; Wildman, D. E.

10.1101/137554 — genomics — Posted on 2017-05-12

804 Genome-Wide Association Study Reveals Genetic Link Between Diarrhea-Associated Entamoeba histolytica Infection And Inflammatory Bowel Disease

Wojcik, G. L.; Marie, C.; Abhyankar, M. M.; Yoshida, N.; Watanabe, K.; Mychaleckyj, J.; Kirkpatrick, B. D.; Rich, S. S.; Concannon, P.; Haque, R.; Tsokos, G. C.; Petri, W. A.; Duggal, P.

10.1101/137448 — genetics — Posted on 2017-05-12

805 Estimation Of Universal And Taxon-Specific Parameters Of Prokaryotic Genome Evolution

Sela, I.; Wolf, Y. I.; Koonin, E.

10.1101/137430 — evolutionary biology — Posted on 2017-05-12

806 Conserving Phylogenetic Diversity Can Be A Poor Strategy For Conserving Functional Diversity

Mazel, F.; Mooers, A.; Dalla Riva, G.; Pennell, M.

10.1101/137521 — ecology — Posted on 2017-05-12

807 Arginase 1 Is Negatively Regulated By β-Catenin Signaling In The Lung

Lam, A. P.; Sennello, J. A.; Flozak, A. S.; Misharin, A.; Gottardi, C.

10.1101/137539 — cell biology — Posted on 2017-05-12

808 Ratiometric Distribution Of OCT4 During Stem Cell Division Controls The Balance Between Self-Renewal And Differentiation

Wolff, S. C.; Dumitru, R.; Dungee, C. D.; Kedziora, K. M.; Haggerty, R. A.; Cheng, J.; Beltran, A. S.; Purvis, J. E.

10.1101/137299 — systems biology — Posted on 2017-05-12

809 Maximum Entropy Framework For Inference Of Cell Population Heterogeneity In Signaling Networks

Dixit, P.; Lyashenko, E.; Niepel, M.; Vitkup, D.

10.1101/137513 — systems biology — Posted on 2017-05-12

810 DNA Damage Checkpoint Dynamics Drive Cell Cycle Phase Transitions

Chao, H. X.; Poovey, C. E.; Privette, A. A.; Grant, G. D.; Cook, J. G.; Purvis, J. E.

10.1101/137307 — systems biology — Posted on 2017-05-12

811 Inducible and reversible phenotypes in a novel mouse model of Friedreich’s Ataxia

Chandran, V.; Gao, K.; Swarup, V.; Versano, R.; Dong, H.; Jordan, M. C.; Geschwind, D. H.

10.1101/137265 — neuroscience — Posted on 2017-05-12

812 Quadratization: From Conductance-Based Models To Caricature Models With Parabolic Nonlinearities

Turnquist, A. G. R.; Rotstein, H.

10.1101/137422 — neuroscience — Posted on 2017-05-12

813 Learning And Attention Reveal A General Relationship Between Neuronal Variability And Perception

Ni, A. M.; Ruff, D. A.; Alberts, J. J.; Symmonds, J.; Cohen, M. R.

10.1101/137083 — neuroscience — Posted on 2017-05-12

814 The CRISPR Spacer Space Is Dominated By Sequences From The Species-Specific Mobilome

Shmakov, S. A.; Sitnik, V.; Makarova, K. S.; Wolf, Y. I.; Severinov, K. V.; Koonin, E.

10.1101/137356 — microbiology — Posted on 2017-05-12

815 Priming In A Permissive Type I-C CRISPR-Cas System Reveals Distinct Dynamics Of Spacer Acquisition And Loss

Rao, C.; Chin, D.; Ensminger, A. W.

10.1101/137067 — microbiology — Posted on 2017-05-12

816 Rearrangement Scenarios Guided By Chromatin Structure

Pulicani, S.; Simonaitis, P.; Swenson, K. M.

10.1101/137323 — genomics — Posted on 2017-05-12

817 Chaperone Network Based On Cellular Response Reveals The Non-Optimal Response To Perturbed Proteostasis

Ghosh, A.; Gangadharan, A.; Das, S.; Verma, M.; Dash, D.; Mapa, K.; Chakraborty, K.

10.1101/137349 — genetics — Posted on 2017-05-12

818 Inferring Genetic Interactions From Comparative Fitness Data

Crona, K.; Gavryushkin, A.; Greene, D.; Beerenwinkel, N.

10.1101/137372 — evolutionary biology — Posted on 2017-05-12

819 Disease implications of animal social organization and network structure - a quantitative analysis

Sah, P.; Mendez, J. D.; Mann, J.; Bansal, S.

10.1101/106633 — epidemiology — Posted on 2017-05-12

820 Response-Time Behaviors Of Intercellular Communication Network Motifs

Thurley, K.; Wu, L. F.; Altschuler, S. J.

10.1101/136952 — biophysics — Posted on 2017-05-12

821 Cell Mechanosensing and Avoidance of Strain Gradients

Chagnon-Lessard, S.; Jean-Ruel, H.; Godin, M.; Pelling, A. E.

10.1101/095976 — biophysics — Posted on 2017-05-12

822 Modules Of Co-Occurrence In The Cyanobacterial Pan-Genome

Beck, C.; Knoop, H.; Steuer, R.

10.1101/137398 — bioinformatics — Posted on 2017-05-12

823 H&E-stained Whole Slide Image Deep Learning Predicts SPOP Mutation State in Prostate Cancer

Schaumberg, A. J.; Rubin, M. A.; Fuchs, T. J.

10.1101/064279 — pathology — Posted on 2017-05-12

824 The Development Of Bayesian Integration In Sensorimotor Estimation

Chambers, C.; Sokhey, T.; Gaebler-Spira, D.; Kording, K.

10.1101/136267 — neuroscience — Posted on 2017-05-12

825 Cocaine place conditioning strengthens location-specific hippocampal inputs to the nucleus accumbens

Sjulson, L.; Peyrache, A.; Cumpelik, A.; Cassataro, D.; Buzsaki, G.

10.1101/105890 — neuroscience — Posted on 2017-05-12

826 Sanctions, partner recognition, and variation in mutualism

Yoder, J. B.; Tiffin, P.

10.1101/049593 — evolutionary biology — Posted on 2017-05-12

827 A lottery model of density-dependent selection in evolutionary genetics

Bertram, J.; Masel, J.

10.1101/102087 — evolutionary biology — Posted on 2017-05-12

828 Protein Features Identification For Machine Learning-Based Prediction Of Protein-Protein Interactions

Raza, K.

10.1101/137257 — bioinformatics — Posted on 2017-05-12

829 Amortized Hypothesis Generation

Dasgupta, I.; Schulz, E.; Goodman, N.; Gershman, S.

10.1101/137190 — animal behavior and cognition — Posted on 2017-05-12

830 Fundamental Constraints In Synchronous Muscle Limit Superfast Motor Control In Vertebrates

Mead, A. F.; Osinalde, N.; Ortenblad, N.; Nielsen, J.; Brewer, J.; Vellema, M.; Adam, I.; Scharff, C.; Song, Y.; Ulrik, F.; Blagoev, B.; Kratchmarova, I.; Elemans, C. P. H.

10.1101/135343 — physiology — Posted on 2017-05-12

831 Oral diseases: a 14-year experience of a Chilean institution with a systematic review from eight countries

Rivera, C.; Jones-Herrera, C.; Vargas, P.; Venegas, B.; Droguett, D.

10.1101/134056 — pathology — Posted on 2017-05-12

832 Ionic Current Correlations Are Ubiquitous Across Phyla

Tran, T.; Unal, C. T.; Zaborszky, L.; Rotstein, H. G.; Kirkwood, A.; Golowasch, J. P.

10.1101/137133 — neuroscience — Posted on 2017-05-12

833 Easyml: Easily Build And Evaluate Machine Learning Models

Hendricks, P.; Ahn, W.-Y.

10.1101/137240 — neuroscience — Posted on 2017-05-12

834 LTR_retriever: A Highly Accurate And Sensitive Program For Identification Of LTR Retrotransposons

Ou, S.; Jiang, N.

10.1101/137141 — genomics — Posted on 2017-05-12

835 Detecting Molecular Basis Of Phenotypic Convergence

Chabrol, O.; Royer-Carenzi, M.; Pontarotti, P.; Didier, G.

10.1101/137174 — evolutionary biology — Posted on 2017-05-12

836 A Theory For Ecological Survey Methods To Map Individual Distributions

Takashina, N.; Beger, M.; Kusumoto, B.; Rathnayake, S.; Possingham, H.

10.1101/137158 — ecology — Posted on 2017-05-12

837 Deciphering The Developmental Program In The Ascidian Ciona intestinalis Just Prior To Gastrulation

Harada, Y.

10.1101/137166 — developmental biology — Posted on 2017-05-12

838 Gaussian Curvature Directs The Distribution Of Spontaneous Curvature On Bilayer Membrane Necks

Chabanon, M.; Rangamani, P.

10.1101/137091 — biophysics — Posted on 2017-05-12

839 De Novo Annotation And Characterization Of The Translatome With Ribosome Profiling Data

Xiao, Z.; Huang, R.; Chen, Y.; Deng, H.; Yang, X.

10.1101/137216 — bioinformatics — Posted on 2017-05-12

840 Improved Split Fluorescent Proteins For Endogenous Protein Labeling

Feng, S.; Sekine, S.; Pessino, V.; Li, H.; Leonetti, M. D.; Huang, B.

10.1101/137059 — bioengineering — Posted on 2017-05-12

841 Visualization And Label-Free Quantification Of Microfluidic Mixing Using Quantitative Phase Imaging

Park, G.; Han, D.; Kim, G.; Shin, S.; Kim, K.; Park, J.-K.; Park, Y.

10.1101/137117 — bioengineering — Posted on 2017-05-12

842 H&E-stained Whole Slide Image Deep Learning Predicts SPOP Mutation State in Prostate Cancer

Schaumberg, A. J.; Rubin, M. A.; Fuchs, T. J.

10.1101/064279 — pathology — Posted on 2017-05-12

843 The functional anatomy of self-generated and predictable speech

Oestreich, L. K. L.; Whitford, T. J.; Garrido, M. I.

10.1101/119644 — neuroscience — Posted on 2017-05-12

844 AFF-1 fusogen can rejuvenate the regenerative potential of adult dendritic trees via self-fusion

Kravtsov, V.; Oren-Suissa, M.; Podbilewicz, B.

10.1101/062679 — neuroscience — Posted on 2017-05-12

845 Lysinibacillus fusiformis M5 induces increased complexity in Bacillus subtilis 168 colony biofilms via hypoxanthine

Gallegos Monterrosa, R.; Kankel, S.; Goetze, S.; Barnett, R.; Stallforth, P.; Kovacs, A. T.

10.1101/118125 — microbiology — Posted on 2017-05-12

846 A Single Checkpoint Pathway Eliminates Mouse Oocytes With DNA Damage Or Chromosome Synapsis Failure

Rinaldi, V.; Bolcun-Filas, E.; Kogo, H.; Kurahashi, H.; Schimenti, J.

10.1101/137075 — genetics — Posted on 2017-05-12

847 Repeated losses of PRDM9-directed recombination despite the conservation of PRDM9 across vertebrates

Baker, Z.; Schumer, M.; Haba, Y.; Bashkirova, L.; Holland, C.; Rosenthal, G. G.; Przeworski, M.

10.1101/093096 — evolutionary biology — Posted on 2017-05-12

848 Selection at the pathway level drives the evolution of gene-specific transcriptional noise

Barroso, G. V.; Puzovic, N.; Dutheil, J. Y.

10.1101/104216 — evolutionary biology — Posted on 2017-05-12

849 Decoding temporal interpretation of the morphogen Bicoid in the early Drosophila embryo

Huang, A.; Amourda, C.; Zhang, S.; Tolwinski, N. S.; Saunders, T. E.

10.1101/110841 — developmental biology — Posted on 2017-05-12

850 TITER: predicting translation initiation sites by deep learning

Zhang, S.; Hu, H.; Jiang, T.; Zhang, L.; Zeng, J.

10.1101/103374 — bioinformatics — Posted on 2017-05-12

851 The Sentieon Genomics Tools - A fast and accurate solution to variant calling from next-generation sequence data

Freed, D. N.; Aldana, R.; Weber, J. A.; Edwards, J. S.

10.1101/115717 — bioinformatics — Posted on 2017-05-12

852 Novel Pedigree Analysis Implicates DNA Repair And Chromatin Remodeling In Multiple Myeloma Risk

Waller, R. G.; Darlington, T. M.; Wei, X.; Madsen, M.; Thomas, A.; Curtin, K.; Coon, H.; Rajamanickam, V.; Musinsky, J.; Jayabalan, D.; Atanackovic, D.; Rajkumar, V.; Kumar, S.; Slager, S.; Middha, M.; Galia, P.; Demangel, D.; Salama, M.; Joseph, V.; McKay, J.; Offit, K.; Klein, R. J.; Lipkin, S. M.; Dumontet, C.; Vachon, C. M.; Camp, N. J.

10.1101/137000 — genetics — Posted on 2017-05-12

853 Characterization Of Amylase And Protease Activities In The Digestive System Of Concholepas concholepas (Gastropoda, muricidae)

Gutierrez, A. P.; Cerda-Llanos, V.; Forttes, D.; Carvajal, N.; Uribe, E. A.

10.1101/132100 — biochemistry — Posted on 2017-05-12

854 Genome-wide Association Study Of Plasma Proteins Identifies Putatively Causal Genes, Proteins, And Pathways For Cardiovascular Disease

Yao, C.; Chen, G.; Song, C.; Mendelson, M.; Huan, T.; Laser, A.; Wu, H.; Ho, J. E.; Courchesne, P.; Lyass, A.; Larson, M. G.; Gieger, C.; Graumann, J.; Johnson, A. D.; Hwang, S.-J.; Liu, C.; Suhre, K.; Levy, D.

10.1101/136523 — epidemiology — Posted on 2017-05-12

855 Fitness, Physical Activity, And Cardiovascular Disease: Longitudinal And Genetic Analyses In The UK Biobank Study

Tikkanen, E.; Gustafsson, S.; Ingelsson, E.

10.1101/136192 — epidemiology — Posted on 2017-05-12

856 Regulating prospero mRNA Stability Determines When Neural Stem Cells Stop Dividing

Yang, L.; Samuels, T. J.; Arava, Y.; Robertson, F.; Jarvelin, A. I.; Yang, C.-P.; Lee, T.; Ish-Horowicz, D.; Davis, I.

10.1101/135848 — developmental biology — Posted on 2017-05-12

857 Systematic Genetic Dissection Of Chitin Degradation And Uptake In Vibrio cholerae

Hayes, C. A.; Dalia, T. N.; Dalia, A. B.

10.1101/137042 — microbiology — Posted on 2017-05-11

858 The Evaluative Role of Rostrolateral Prefrontal Cortex in Rule-Based Category Learning

Paniukov, D.; Davis, T.

10.1101/107110 — neuroscience — Posted on 2017-05-11

859 De Novo Assembly And Annotation Of The Eastern Fence Lizard (Sceloporus undulatus ) Transcriptome

Bortoletto Grizante, M.; Tollis, M.; Rodriguez, J. J.; Levy, O.; Angilletta, M. J.; Kusumi, K.

10.1101/136069 — genomics — Posted on 2017-05-11

860 Genes Involved In Human Sialic Acid Biology Do Not Harbor Signatures Of Recent Positive Selection

Moon, J. M.; Aronoff, D.; Capra, T.; Abbot, P.; Rokas, A.

10.1101/137034 — evolutionary biology — Posted on 2017-05-11

861 A Method To Assess Significance Of Differences In RNA Expression Levels Among Specific Groups Of Genes

He, M.; Liu, P.; Lawrence-Dill, C. J.

10.1101/136143 — bioinformatics — Posted on 2017-05-11

862 Highly Efficient Maternal-Fetal Zika Virus Transmission in Pregnant Rhesus Macaques

Nguyen, S. M.; Antony, K. M.; Dudley, D. M.; Kohn, S.; Simmons, H.; Wolfe, B.; Salamat, M. S.; Teixeira, L. B.; Wiepz, G. J.; Thoong, T. H.; Aliota, M. T.; Weiler, A. M.; Barry, G. L.; Weisgrau, K. L.; Vosler, L. J.; Mohns, M. S.; Breitbach, M. E.; Stewart, L. M.; Rasheed, M. N.; Newman, C. M.; Graham, M. E.; Wieben, O. E.; Turski, P. A.; Johnson, K. M.; Post, J.; Hayes, J. M.; Schultz-Darken, N.; Schotzko, M. L.; Eudailey, J. A.; Permar, S. R.; Rakasz, E. G.; Mohr, E. L.; Capuano, S.; Tarantal, A. F.; Osorio, J. E.; O'Connor, S. L.; Friedrich, T. C.; O'Connor, D. H.; Golos, T. G.

10.1101/106674 — pathology — Posted on 2017-05-11

863 Defects of myelination are common pathophysiology in syndromic and idiopathic autism spectrum disorders

Phan, B. N.; Page, S. C.; Campbell, M. N.; Bohlen, J. F.; Thaxton, C. L.; Simon, J. M.; Burke, E. E.; Shin, J. H.; Kennedy, A. J.; Sweatt, J. D.; Philpot, B. D.; Jaffe, A. E.; Maher, B. J.

10.1101/128124 — neuroscience — Posted on 2017-05-11

864 Morphometric Similarity Networks Detect Microscale Cortical Organisation And Predict Inter-Individual Cognitive Variation

Seidlitz, J.; Vaša, F.; Shinn, M.; Romero-Garcia, R.; Whitaker, K. J.; Vertes, P. E.; Reardon, P. K.; Clasen, L.; Messinger, A.; Leopold, D. A.; Fonagy, P.; Dolan, R. J.; Jones, P. B.; Goodyer, I. M.; the NSPN Consortium, ; Raznahan, A.; Bullmore, E. T.

10.1101/135855 — neuroscience — Posted on 2017-05-11

865 Exploration and recency as the main proximate causes of probability matching: a reinforcement learning analysis

Feher da Silva, C.; Victorino, C. G.; Caticha, N.; Baldo, M. V. C.

10.1101/104752 — neuroscience — Posted on 2017-05-11

866 Structural covariance networks across the lifespan, from 6-94 years of age

DuPre, E.; Spreng, R. N.

10.1101/090233 — neuroscience — Posted on 2017-05-11

867 Conditioning by Subthreshold Synaptic Input Changes the Characteristic Firing Pattern of CA3 Hippocampal Neurons

Soldado Magraner, S.; Brandalise, F.; Honnuraiah, S.; Pfeiffer, M.; Gerber, U.; Douglas, R.

10.1101/084152 — neuroscience — Posted on 2017-05-11

868 Contribution of systemic and somatic factors to clinical response and resistance in urothelial cancer: an exploratory multi-omic analysis

Snyder, A.; Nathanson, T.; Funt, S.; Ahuja, A.; Buros Novik, J.; Hellmann, M. D.; Chang, E.; Aksoy, B. A.; Al-Ahmadie, H.; Yusko, E.; Vignali, M.; Benzeno, S.; Boyd, M.; Moran, M.; Iyer, G.; Robins, H. S.; Mardis, E. R.; Merghoub, T.; Hammerbacher, J.; Rosenberg, J.; Bajorin, D.

10.1101/086843 — genomics — Posted on 2017-05-11

869 Selection at the pathway level drives the evolution of gene-specific transcriptional noise

Barroso, G. V.; Puzovic, N.; Dutheil, J. Y.

10.1101/104216 — evolutionary biology — Posted on 2017-05-11

870 Genome And Epigenome Engineering CRISPR Toolkit For Probing In Vivo cis-Regulatory Interactions In The Chicken Embryo

Williams, R. M.; Senanayake, U.; Artibani, M.; Taylor, G.; Wells, D.; Ahmed, A. A.; Sauka-Spengler, T.

10.1101/135525 — developmental biology — Posted on 2017-05-11

871 Genome-Wide Association Analysis Identifies Genetic Correlates of Immune Infiltrates in Solid Tumors.

Siemers, N. O.; Holloway, J. L.; Chang, H.; Chasalow, S. D.; Ross-MacDonald, P. B.; Voliva, C. F.; Szustakowski, J. D.

10.1101/106039 — cancer biology — Posted on 2017-05-11

872 Outlier detection for improved differential splicing quantification from RNA-Seq experiments with replicates

Norton, S.; Vaquero-Garcia, J.; Barash, Y.

10.1101/104059 — bioinformatics — Posted on 2017-05-11

873 Thermal Acclimation Mitigates Cold-Induced Paracellular Leak From The Drosophila Gut

MacMillan, H. A.; Yerushalmi, G.; Jonusaite, S.; Kelly, S. P.; Donini, A.

10.1101/136895 — physiology — Posted on 2017-05-11

874 A Confidence-Based Reinforcement Learning Model For Perceptual Learning

Guggenmos, M.; Sterzer, P.

10.1101/136903 — neuroscience — Posted on 2017-05-11

875 Top-down beta enhances bottom-up gamma.

Richter, C. G.; Thompson, W. H.; Bosman, C. A.; Fries, P.

10.1101/054288 — neuroscience — Posted on 2017-05-11

876 Identifying Core Biological Processes Distinguishing Human Eye Tissues With Systems-Level Gene Expression Analyses And Weighted Correlation Networks

Bryan, J. M.; Hufnagel, R. B.; Brooks, B. P.; McGaughey, D.

10.1101/136960 — genomics — Posted on 2017-05-11

877 Multi-omic analysis of a hyper-diverse plant metabolic pathway reveals evolutionary routes to biological innovation

Moghe, G. D.; Leong, B. J.; Hurney, S.; Jones, A. D.; Last, R. L.

10.1101/136937 — genomics — Posted on 2017-05-11

878 Evolutionary Processes Shaping Diversity Across The Homo Lineage

Schroeder, L.; Ackermann, R. R.

10.1101/136507 — evolutionary biology — Posted on 2017-05-11

879 Element-Free Multiscale Modeling Of Large Deformation Behavior Of Red Blood Cell Membrane With Malaria Infection

Ademiloye, A. S.; Zhang, L. W.; Liew, K. M.

10.1101/136648 — biophysics — Posted on 2017-05-11

880 Quantifying Spontaneous Metastasis In A Syngeneic Mouse Melanoma Model Using Real Time PCR

Deng, W.; McLaughlin, S. L.; Klinke, D. J.

10.1101/136945 — cancer biology — Posted on 2017-05-11

881 Quantitative Protein Topography Measurements By High Resolution Hydroxyl Radical Protein Footprinting Enable Accurate Molecular Model Selection

Xie, B.; Sood, A.; Woods, R. J.; Sharp, J. S.

10.1101/136929 — biochemistry — Posted on 2017-05-11

882 Interactive Biology Cloud Lab Enables Authentic Inquiry-Based Science Learning At MOOC Scale

Hossain, Z.; Bumbacher, E.; Brauneis, A.; Diaz, M.; Saltarelli, A.; Blikstein, P.; Riedel-Kruse, I.

10.1101/136317 — scientific communication and education — Posted on 2017-05-11

883 Eyeballs On Science: Impact Is Not Just Citations, But How Big Is Readership?

Winker, K.

10.1101/136689 — scientific communication and education — Posted on 2017-05-11

884 Organ-Specific NLR Resistance Gene Expression Varies With Plant Symbiotic Status

Munch, D.; Gupta, V.; Bachmann, A.; Busch, W.; Kelly, S.; Mun, T.; Andersen, S. U.

10.1101/135764 — plant biology — Posted on 2017-05-11

885 Parametric Imaging Of FDG-PET Data Using Physiology And Iterative Regularization: Application To The Hepatic And Renal Systems

Scussolini, M.; Garbarino, S.; Sambuceti, G.; Caviglia, G.; Piana, M.

10.1101/136853 — physiology — Posted on 2017-05-11

Diaz, M.; Johnson, M. A.; Burke, D. M.; Truong, T.-K.; Madden, D. J.

10.1101/136606 — neuroscience — Posted on 2017-05-11

887 Cerebellar Degeneration Affects Cortico-Cortical Connectivity In Motor Learning Networks

Tzvi, E.; Zimmermann, C.; Bey, R.; Muente, T. F.; Nitschke, M.; Kraemer, U. M.

10.1101/136820 — neuroscience — Posted on 2017-05-11

888 A Balance Of Outward And Linear Inward Ionic Currents Is Required For The Generation Of Slow Wave Oscillations

Golowasch, J.; Bose, A.; Guan, Y.; Salloum, D.; Roeser, A.; Nadim, F.

10.1101/136887 — neuroscience — Posted on 2017-05-11

889 Neurophysiological Correlates Of The Rubber Hand Illusion In Evoked And Oscillatory Brain Activity

Rao, I. S.; Kayser, C.

10.1101/136846 — neuroscience — Posted on 2017-05-11

890 Sensorimotor Processing In The Basal Ganglia Leads To Transient Beta Oscillations During Behavior

Mirzaei, A.; Kumar, A.; Leventhal, D.; Mallet, N.; Aertsen, A.; Berke, J.; Schmidt, R.

10.1101/136879 — neuroscience — Posted on 2017-05-11

891 Global Phylogenetic Analysis Of Escherichia coli And Plasmids Carrying The mcr-1 Gene Indicates Bacterial Diversity But Plasmid Restriction

Matamoros, S.; van Hattem, J. M.; Arcilla, M. S.; Willemse, N.; Melles, D.; Penders, J.; Nguyen Vinh, T.; Ngo Thi, H.; COMBAT consortium, ; de Jong, M. D.; Schultsz, C.

10.1101/136804 — microbiology — Posted on 2017-05-11

892 Active Trachoma Cases In The Solomon Islands Have Varied Polymicrobial Community Structures But Do Not Associate With Individual Non-Chlamydial Pathogens Of The Eye

Butcher, R.; Sokana, O.; Jack, K.; Kalae, E.; Sui, L.; Russell, C.; Houghton, J.; Palmer, C.; Holland, M. J.; Le Mesurier, R.; Solomon, A.; Mabey, D.; Roberts, C. h.

10.1101/134213 — microbiology — Posted on 2017-05-11

893 Selection-Driven Cost-Efficiency Optimisation Of Transcript Sequences Determines The Rate Of Gene Sequence Evolution In Bacteria

Seward, E. A.; Kelly, S.

10.1101/136861 — evolutionary biology — Posted on 2017-05-11

894 The Kobresia pygmaea ecosystem of the Tibetan highlands – origin, functioning and degradation of the world’s largest pastoral alpine ecosystem

Miehe, G.; Schleuss, P.-M.; Seeber, E.; Babel, W.; Biermann, T.; Braendle, M.; Chen, F.; Coners, H.; Foken, T.; Gerken, T.; Graf, H.-F.; Guggenberger, G.; Hafner, S.; Holzapfel, M.; Ingrisch, J.; Kuzyakov, Y.; Lai, Z.; Lehnert, L.; Leuschner, C.; Liu, J.; Liu, S.; Ma, Y.; Miehe, S.; Mosbrugger, V.; Noltie, H. J.; Opgenoorth, L.; Schmidt, J.; Spielvogel, S.; Unteregelsbacher, S.; Wang, Y.; Willinghofer, S.; Xu, X.; Yang, Y.; Zhang, S.; Wesche, K.

10.1101/135558 — ecology — Posted on 2017-05-11

895 Does Temperature Change Worsen Or Mitigate The Effect Of Malaria Infection On Erythrocyte Deformability?

Ademiloye, A. S.; Zhang, L. W.; Liew, K. M.

10.1101/136796 — biophysics — Posted on 2017-05-11

896 Systematic Characterization Of Human 21st Chromosome Orthologs In Caenorhabditis elegans

Nordquist, S.; Griffith, A.; Pierce, J.

10.1101/136911 — neuroscience — Posted on 2017-05-11

897 Crosstalk Between Diverse Synthetic Protein Degradation Tags In Escherichia coli

Butzin, N.; Mather, W.

10.1101/136812 — synthetic biology — Posted on 2017-05-11

898 Genome-Wide Characterization Of Isoform Switching In Arabidopsis thaliana

Vaneechoutte, D.; Estrada, A. R.; Lin, Y.-C.; Loraine, A.; Vandepoele, K.

10.1101/136770 — plant biology — Posted on 2017-05-11

899 Plant miRNA Regulation Is Environmentally And Developmentally-Sensitive

von Born, P.; Rubio-Somoza, I.

10.1101/136762 — plant biology — Posted on 2017-05-11

900 Enterococcus faecalis Promotes Innate Immune Suppression And Polymicrobial Catheter-Associated Urinary Tract Infection

Tien, B. Y. Q.; Goh, H. M. S.; Chong, K. K. L.; Bhaduri-Tagore, S.; Holec, S.; Dress, R.; Ginhoux, F.; Ingersoll, M. A.; Williams, R. B. H.; Kline, K.

10.1101/133140 — microbiology — Posted on 2017-05-11

901 Modifying And Reacting To The Environmental pH Drives Bacterial Interactions

Ratzke, C.; Gore, J.

10.1101/136838 — microbiology — Posted on 2017-05-11

902 A Simple Representation Of Three-Dimensional Molecular Structure

Axen, S. D.; Huang, X.-P.; Caceres, E. L.; Gendelev, L.; Roth, B. L.; Keiser, M.

10.1101/136705 — bioinformatics — Posted on 2017-05-11

903 Oxidative-Phosphorylation Genes From The Mitochondrial And Nuclear Genomes Co-Express In All Human Tissues Except For The Ancient Brain

Barshad, G.; Blumberg, A.; Mishmar, D.

10.1101/136457 — genomics — Posted on 2017-05-11

904 Mapping Tumor-Specific Expression QTLs In Impure Tumor Samples

Wilson, D. R.; Sun, W.; Ibrahim, J. G.

10.1101/136614 — genomics — Posted on 2017-05-11

905 Excretion Through Digestive Tissues Predates The Evolution Of Excretory Organs

Andrikou, C.; Thiel, D.; Ruiz-Santiesteban, J. A.; Hejnol, A.

10.1101/136788 — evolutionary biology — Posted on 2017-05-11

906 A Novel Reporter Allele For Monitoring Dll4 Expression Within The Embryonic And Adult Mouse

Herman, A. M.; Rhyner, A. M.; Devine, W. P.; Marrelli, S. P.; Bruneau, B. G.; Wythe, J. D.

10.1101/136713 — developmental biology — Posted on 2017-05-11

907 Scc2/Nipbl Hops Between Chromosomal Cohesin Rings After Loading

Rhodes, J.; Mazza, D.; Nasmyth, K.; Uphoff, S.

10.1101/136754 — cell biology — Posted on 2017-05-11

908 Women’s preferences for facial masculinity are not related to their hormonal status

Jones, B. C.; Hahn, A. C.; Fisher, C. I.; Wang, H.; Kandrik, M.; Han, C.; Fasolt, V.; Morrison, D.; Lee, A. J.; Holzleitner, I. J.; Roberts, C.; Little, A. C.; DeBruine, L. M.

10.1101/136549 — animal behavior and cognition — Posted on 2017-05-11

909 Boosting The Localization Precision Of dSTORM By Biocompatible Metal-Dielectric Coated Glass Coverslips

Heil, H. S.; Schreiber, B.; Emmerling, M.; Hoefling, S.; Kamp, M.; Sauer, M.; Heinze, K. G.

10.1101/136739 — biophysics — Posted on 2017-05-11

910 Imp/Syp Temporal Gradients Govern Decommissioning Of Drosophila Neural Stem Cells

Yang, C.-P.; Samuels, T. J.; Huang, Y.; Yang, L.; Ish-Horowicz, D.; Davis, I.; Lee, T.

10.1101/136655 — developmental biology — Posted on 2017-05-10

911 Chromatin domain formation: a new model

Bernardi, G.

10.1101/096487 — genomics — Posted on 2017-05-10

912 Robust inference in summary data Mendelian randomisation via the zero modal pleiotropy assumption

Hartwig, F. P.; Davey Smith, G.; Bowden, J.

10.1101/126102 — epidemiology — Posted on 2017-05-10

913 Analyzing ecological networks of species interactions

Delmas, E.; Besson, M.; Brice, M.-H.; Burkle, L.; Dalla Riva, G. V.; Fortin, M.-J.; Gravel, D.; Guimaraes, P.; Hembry, D.; Newman, E.; Olesen, J. M.; Pires, M.; Yeakel, J. D.; Poisot, T.

10.1101/112540 — ecology — Posted on 2017-05-10

914 Sensitivity analysis of Wnt β-catenin based transcription complex might bolster power-logarithmic psychophysical law and reveal preserved gene gene interactions

Sinha, S.

10.1101/015834 — systems biology — Posted on 2017-05-10

915 Neurotrophin Receptor Ntrk2b Function In The Maintenance Of Dopamine And Serotonin Neurons In Zebrafish

Priyadarshini Sahu, M.; Pajanoja, C.; Rozov, S.; Panula, P.; Castren, E.

10.1101/136416 — neuroscience — Posted on 2017-05-10

916 Spinal cholinergic interneurons differentially control motoneuron excitability and alter the locomotor network operational range

Bertuzzi, M.; Ampatzis, K.

10.1101/135723 — neuroscience — Posted on 2017-05-10

917 FplA From Fusobacterium nucleatum Is A Type Vd Autotransporter Phospholipase With A Proposed Role In Altered Host Signaling And Evasion Of Autophagy

Casasanta, M. A.; Yoo, C. C.; Smith, H. B.; Duncan, A. J.; Cochrane, K.; Varano, A. C.; Allen-Vercoe, E.; Slade, D. J.

10.1101/136598 — microbiology — Posted on 2017-05-10

918 Mechanistic Modeling Quantifies The Influence Of Tumor Growth Kinetics On The Response To Anti-Angiogenic Treatment

Gaddy, T. D.; Finley, S. D.

10.1101/136531 — systems biology — Posted on 2017-05-10

919 Classification Of Gene Signatures For Their Information Value And Functional Redundancy

Cantini, L.; Calzone, L.; Martignetti, L.; Rydenfelt, M.; Bluthgen, N.; Barillot, E.; Zinovyev, A.

10.1101/136499 — systems biology — Posted on 2017-05-10

920 A Population-Based Atlas Of The Macroscale Structural Connectome In The Human Brain

Yeh, F.-C.; Panesar, S.; Fernandes, D.; Meola, A.; Yoshino, M.; Fernandez-Miranda, J. C.; Vettel, J.; Verstynen, T.

10.1101/136473 — neuroscience — Posted on 2017-05-10

921 Adaptation Of Staphylococcus saprophyticus At The Host-Pathogen Interface

Mortimer, T. D.; Annis, D. S.; O'Neill, M. B.; Bohr, L. L.; Smith, T. M.; Poinar, H. N.; Mosher, D. F.; Pepperell, C. S.

10.1101/136556 — microbiology — Posted on 2017-05-10

922 Evolutionary Processes Shaping Diversity Across The Homo Lineage

Schroeder, L.; Ackermann, R. R.

10.1101/136507 — evolutionary biology — Posted on 2017-05-10

923 The Evolution Of Small RNA-Mediated Silencing Of An Invading Transposable Element

Kelleher, E. S.; Azevedo, R. B. R.; Zheng, Y.

10.1101/136580 — evolutionary biology — Posted on 2017-05-10

924 Organoid And Tissue Patterning Through Phase Separation: Use Of A Vertex Model To Relate Dynamics Of Patterning To Underlying Biophysical Parameters

Waites, W.; Cavaliere, M.; Cachat, E.; Danos, V.; Davies, J. A.

10.1101/136366 — developmental biology — Posted on 2017-05-10

925 A New Quantitative Cell Microscopy Approach Reveals Mechanistic Insights Into Clearance Of Membrane Substrates By The AAA Protein Msp1

Weir, N. R.; Kamber, R. A.; Martenson, J. S.; Denic, V.

10.1101/136572 — cell biology — Posted on 2017-05-10

926 Untangling The Gene-Epigenome Networks: Timing Of Epigenetic Regulation Of Gene Expression In Acquired Cetuximab Resistance

Stein-O'Brien, G.; Kagohara, L. T.; Li, S.; Thakar, M.; Ranaweera, R.; Ozawa, H.; Cheng, H.; Considine, M.; Favorov, A.; Danilova, L.; Califano, J.; Izumchenko, E.; Gaykalova, D. A.; Chung, C. H.; Fertig, E. J.

10.1101/136564 — cancer biology — Posted on 2017-05-10

927 Within-Woman Hormone-Attractiveness Correlations Are Not Simply Byproducts Of Between-Women Hormone-Attractiveness Correlations

Jones, B. C.; Hahn, A. C.; Fisher, C. I.; Wang, H.; Kandrik, M.; Han, C.; Lee, A. J.; Holzleitner, I. J.; DeBruine, L. M.

10.1101/136515 — animal behavior and cognition — Posted on 2017-05-10

928 Diversity Of Biocrust-Forming Cyanobacteria In A Semiarid Gypsiferous Site From Central Spain

Cano-Diaz, C.; Mateo, P.; Munoz, M. A.; Maestre, F. T.

10.1101/136390 — microbiology — Posted on 2017-05-10

929 De Novo Assembly And Annotation Of The Eastern Fence Lizard (Sceloporus undulatus) Transcriptome

Bortoletto Grizante, M.; Tollis, M. A.; Rodriguez, J. J.; Levy, O.; Angilletta, M. J.; Kusumi, K.

10.1101/136069 — genomics — Posted on 2017-05-10

930 Inferring Relevant Cell Types For Complex Traits Using Single-Cell Gene Expression

Calderon, D.; Bhaskar, A.; Knowles, D.; Golan, D.; Raj, T.; Fu, A.; Pritchard, J. K.

10.1101/136283 — genomics — Posted on 2017-05-10

931 Simple And Multiplexed Enrichment Of Rare DNA Variants Via Sequence-Selective And Temperature-Robust Amplification

Wu, L. R.; Chen, S. X.; Wu, Y.; Patel, A. A.; Zhang, D.

10.1101/136465 — genomics — Posted on 2017-05-10

932 Population-Based Relative Risks For Specific Family History Constellations Of Breast Cancer - Towards Individualized Risk Estimation

Albright, F. S.; Neumayer, L.; Buys, S. S.; Matsen, C. B.; Kaphingst, K. A.; Cannon-Albright, L. A.

10.1101/136051 — genetics — Posted on 2017-05-10

933 Targeting Repair Pathways With Small Molecules Increases Precise Genome Editing In Pluripotent Stem Cells

Riesenberg, S.; Maricic, T.

10.1101/136374 — genetics — Posted on 2017-05-10

934 A Systematic Analysis Of Atomic Protein-Ligand Interactions In The PDB

Ferreira de Freitas, R.; Schapira, M.

10.1101/136440 — biophysics — Posted on 2017-05-10

935 PBxplore: A Tool To Analyze Local Protein Structure And Deformability With Protein Blocks

Barnoud, J.; Santuz, H.; Craveur, P.; Joseph, A. P.; Jallu, V.; de Brevern, A. G.; Poulain, P.

10.1101/136408 — bioinformatics — Posted on 2017-05-10

936 smallrnaseq: Short Non Coding RNA-Seq Analysis With Python

Farrell, D.

10.1101/110585 — bioinformatics — Posted on 2017-05-10

937 Protein Phosphatase 1 Regulates Huntingtin Exon 1 Aggregation And Toxicity

Branco-Santos, J.; Herrera, F.; Pocas, G. M.; Pires-Afonso, Y.; Giorgini, F.; Domingos, P. M.; Outeiro, T. F.

10.1101/135954 — neuroscience — Posted on 2017-05-10

938 How Sample Size Influences The Reproducibility Of Task-Based fMRI

Paul, E. J.; Turner, B.; Miller, M. B.; Barbey, A. K.

10.1101/136259 — neuroscience — Posted on 2017-05-10

939 The Development Of Bayesian Integration In Sensorimotor Estimation

Chambers, C.; Sokhey, T.; Gaebler-Spira, D.; Kording, K.

10.1101/136267 — neuroscience — Posted on 2017-05-10

940 African Nonhuman Primates Are Infected With The Yaws Bacterium Treponema pallidum subsp. pertenue

Knauf, S.; Gogarten, J.; Schuenemann, V. J.; De Nys, H. M.; Duex, A.; Strouhal, M.; Mikalova, L.; Bos, K. I.; Armstrong, R.; Batamuzi, E. K.; Chuma, I. S.; Davoust, B.; Diatta, G.; Fyumagwa, R. D.; Kazwala, R. R.; Keyyu, J. D.; Lejora, I. A. V.; Levasseur, A.; Liu, H.; Mayhew, M. A.; Mediannikov, O.; Raoult, D.; Wittig, R. M.; Roos, C.; Leendertz, F. H.; Smajs, D.; Nieselt, K.; Krause, J.; Calvignac-Spencer, S.

10.1101/135491 — microbiology — Posted on 2017-05-10

941 A Next Generation Connectivity Map: L1000 Platform And The First 1,000,000 Profiles

Subramanian, A.; Narayan, R.; Corsello, S. M.; Peck, D. D.; Natoli, T. E.; Lu, X.; Gould, J.; Davis, J. F.; Tubelli, A. A.; Asiedu, J. K.; Lahr, D. L.; Hirschman, J. E.; Liu, Z.; Donahue, M.; Julian, B.; Khan, M.; Wadden, D.; Smith, I.; Lam, D.; Liberzon, A.; Toder, C.; Bagul, M.; Orzechowski, M.; Enache, O. M.; Piccioni, F.; Berger, A. H.; Shamji, A.; Brooks, A. N.; Vrcic, A.; Flynn, C.; Rosains, J.; Takeda, D.; Davison, D.; Lamb, J.; Ardlie, K.; Hogstrom, L.; Gray, N. S.; Clemons, P. A.; Silver, S.; Wu, X.; Zhao, W.-N.; Read-Button, W.; Wu, X.; Haggarty, S. J.; Ronco, L. V.; Boehm, J. S.; Sc

10.1101/136168 — genomics — Posted on 2017-05-10

942 High Resolution Epigenomic Atlas of Early Human Craniofacial Development

Wilderman, A.; Kron, J.; VanOudenhove, J.; Noonan, J. P.; Cotney, J.

10.1101/135368 — genomics — Posted on 2017-05-10

943 Disentangling The Causes For Faster-X Evolution In Aphids

Jaquiery, J.; Peccoud, J.; Ouisse, T.; Legeai, F.; Prunier-Leterme, N.; Gouin, A.; Nouhaud, P.; Brisson, J.; Bickel, R.; Purandare, S.; Poulain, J.; Battail, C.; Lemaitre, C.; Mieuzet, L.; Le Trionnaire, G.; Simon, J.-C.; Rispe, C.

10.1101/125310 — evolutionary biology — Posted on 2017-05-10

944 Selection On Morphological Traits And Fluctuating Asymmetry By A Fungal Parasite In The Yellow Dung Fly

Blanckenhorn, W. U.

10.1101/136325 — evolutionary biology — Posted on 2017-05-10

945 Managing The Analysis Of High-Throughput Sequencing Data

Quilez, J.; Vidal, E.; Le Dily, F.; Serra, F.; Cuartero, Y.; Stadhouders, R.; Filion, G.; Graf, T.; Marti-Renom, M. A.; Beato, M.

10.1101/136358 — bioinformatics — Posted on 2017-05-10

946 Universal Alternative Splicing Of Noncoding Exons

Deveson, I. W.; Brunck, M. E.; Blackburn, J.; Tseng, E.; Hon, T.; Clark, T. A.; Clark, M. B.; Crawford, J.; Dinger, M. E.; Nielsen, L. K.; Mattick, J. S.; Mercer, T. R.

10.1101/136275 — genomics — Posted on 2017-05-10

947 The Population Genomics Of Archaeological Transition In West Iberia

Martiniano, R.; Cassidy, L. M.; O'Maolduin, R.; McLaughlin, R.; Silva, N. M.; Manco, L.; Fidalgo, D.; Pereira, T.; Coelho, M. J.; Serra, M.; Burger, J.; Parreira, R.; Moran, E.; Valera, A.; Porfirio, E.; Boaventura, R.; Silva, A. M.; Bradley, D. G.

10.1101/134254 — genomics — Posted on 2017-05-10

948 Transient Thresholding: A Mechanism Enabling Non-Cooperative Transcriptional Circuitry To Form A Switch

Aull, K. H.; Tanner, E.; Thomson, M.; Weinberger, L. S.

10.1101/134858 — biophysics — Posted on 2017-05-10

949 Extensive Sexual Wing Shape Dimorphism In Drosophila melanogaster, Ceratitis capitata, And Musca domestica

Siomava, N.; Wimmer, E. A.; Posnien, N.

10.1101/135749 — zoology — Posted on 2017-05-09

950 Effects Of Curcumin Nanoformulations On Cellular Function In Niemann-Pick Disease Type C Astrocytes

Maguire, E.; Haslett, L. J.; Welton, J. L.; Waller-Evans, H.; Goike, J.; Clark, E. H.; Knifton, H. R.; Shrestha, R.; Wager, K.; Webb, R.; Lloyd-Evans, E.

10.1101/135830 — pharmacology and toxicology — Posted on 2017-05-09

951 The Neural System of Metacognition Accompanying Decision-Making in The Prefrontal Cortex

Wan, X.; Qiu, L.; Su, J.; Ni, Y.; Bai, Y.; Li, X.

10.1101/135772 — neuroscience — Posted on 2017-05-09

952 Morphometric Similarity Networks Detect Microscale Cortical Organisation And Predict Inter-Individual Cognitive Variation

10.1101/135855 — neuroscience — Posted on 2017-05-09

953 The Genomic History Of Southeastern Europe

Mathieson, I.; Alpaslan Roodenberg, S.; Posth, C.; Szecsenyi-Nagy, A.; Rohland, N.; Mallick, S.; Olade, I.; Broomandkhoshbacht, N.; Cheronet, O.; Fernandes, D.; Ferry, M.; Gamarra, B.; Gonzalez Fortes, G.; Haak, W.; Harney, E.; Krause-Kyora, B.; Kucukkalipci, I.; Michel, M.; Mittnik, A.; Nagele, K.; Novak, M.; Oppenheimer, J.; Patterson, N.; Pfrengle, S.; Sirak, K.; Stewardson, K.; Vai, S.; Alexandrov, S.; Alt, K. W.; Andreescu, R.; Antonović, D.; Ash, A.; Atanassova, N.; Bacvarov, K.; Balazs Gusztav, M.; Bocherens, H.; Bolus, M.; Boroneanţ, A.; Boyadzhiev, Y.; Budnik, A.; Burmaz

10.1101/135616 — genetics — Posted on 2017-05-09

954 3D Single-Molecule Super-Resolution Microscopy With A Tilted Light Sheet

Gustavsson, A.-K.; Petrov, P. N.; Lee, M. Y.; Shechtman, Y.; Moerner, W. E.

10.1101/135699 — biophysics — Posted on 2017-05-09

955 Epigenetic Transitions And Knotted Solitons In Stretched Chromatin

Michieletto, D.; Orlandini, E.; Marenduzzo, D.

10.1101/135756 — biophysics — Posted on 2017-05-09

956 Torque and buckling in stretched intertwined double-helix DNAs

Marko, J.; Brahmachari, S.

10.1101/135905 — biophysics — Posted on 2017-05-09

957 Ketogenic diet or BHB improves epileptiform spikes, memory, survival in Alzheimer’s model

Newman, J. C.; Kroll, F.; Ulrich, S.; Palop, J. J.; Verdin, E.

10.1101/136226 — neuroscience — Posted on 2017-05-09

958 Specific hypersensitive response-associated recognition of new apoplastic effectors from Cladosporium fulvum in wild tomato

10.1101/127746 — microbiology — Posted on 2017-05-09

959 The dental calculus metabolome in modern and historic samples

Velsko, I. M.; Overmyer, K. A.; Speller, C.; Collins, M.; Loe, L.; Frantz, L. A. F.; Rodriguez Martinez, J. B.; Chavez, E.; Klaus, L.; Sankaranarayanan, K.; Lewis, C. M.; Coon, J. J.; Larson, G.; Warinner, C.

10.1101/136176 — microbiology — Posted on 2017-05-09

960 The Beaker Phenomenon And The Genomic Transformation Of Northwest Europe

Olalde, I.; Brace, S.; Allentoft, M. E.; Armit, I.; Kristiansen, K.; Rohland, N.; Mallick, S.; Booth, T.; Szecsenyi-Nagy, A.; Mittnik, A.; Altena, E.; Lipson, M.; Lazaridis, I.; Patterson, N. J.; Broomandkhoshbacht, N.; Diekmann, Y.; Faltyskova, Z.; Fernandes, D. M.; Ferry, M.; Harney, E.; de Knijff, P.; Michel, M.; Oppenheimer, J.; Stewardson, K.; Barclay, A.; Alt, K. W.; Aviles Fernandez, A.; Banffy, E.; Bernabo-Brea, M.; Billoin, D.; Blasco, C.; Bonsall, C.; Bonsall, L.; Allen, T.; Buster, L.; Carver, S.; Castells Navarro, L.; Craig, O. E.; Cook, G. T.; Cunliffe, B.; Denaire, A.; Dinwiddy,

10.1101/135962 — genomics — Posted on 2017-05-09

961 Integrative And Conjugative Elements And Their Hosts: Composition, Distribution, And Organization

Cury, J.; Touchon, M.; Rocha, E. P. C.

10.1101/135814 — genomics — Posted on 2017-05-09

962 MicroRNA-451a regulates colorectal cancer radiosensitivity

Ruhl, R.; Rana, S.; Kelley, K.; Espinosa-Diez, C.; Hudson, C.; Lanciault, C.; Thomas, C.; Tsikitis, L. V.; Anand, S.

10.1101/136234 — cancer biology — Posted on 2017-05-09

963 Pushing The Limits Of Detection Of Weak Binding Using Fragment Based Drug Discovery: Identification Of New Cyclophilin Binders

Georgiou, C.; McNae, I. W.; Wear, M. A.; Ioannidis, H.; Michel, J.; Walkinshaw, M. D.

10.1101/136101 — biophysics — Posted on 2017-05-09

964 Millisecond Dynamics Of BTK Reveal Kinome-Wide Conformational Plasticity Within The Apo Kinase Domain

Sultan, M. M.; Denny, R. A.; Unwalla, R.; Lovering, F.; Pande, V. S.

10.1101/135913 — biophysics — Posted on 2017-05-09

965 Facilitated Dissociation Of Transcription Factors From Single DNA Binding Sites

Kamar, R. I.; Banigan, E. J.; Erbas, A.; Giuntoli, R. D.; Olvera de la Cruz, M.; Johnson, R. C.; Marko, J. F.

10.1101/135947 — biophysics — Posted on 2017-05-09

966 Barcode identification for single cell genomics

Tambe, A.; Pachter, L.

10.1101/136242 — bioinformatics — Posted on 2017-05-09

967 A Method To Assess Significance Of Differences In RNA Expression Levels Among Specific Groups Of Genes

He, M.; Liu, P.; Lawrence-Dill, C. J.

10.1101/136143 — bioinformatics — Posted on 2017-05-09

968 Deep-Learning Based, Automated Segmentation Of Macular Edema In Optical Coherence Tomography

Lee, C. S.; Tyring, A. J.; Deruyter, N. P.; Wu, Y.; Rokem, A.; Lee, A. Y.

10.1101/135640 — bioinformatics — Posted on 2017-05-09

969 Contrast Thresholds Reveal Different Visual Masking Functions In Humans And Praying Mantises

Tarawneh, G.; Nityananda, V.; Rosner, R.; Errington, S.; Herbert, W.; Arranz-Paraiso, S.; Busby, N.; Tampin, J.; Read, J.; Serrano-Pedraza, I.

10.1101/135970 — neuroscience — Posted on 2017-05-09

970 Categorical Representations Of Decision-Variables In Orbitofrontal Cortex

Hirokawa, J.; Vaughan, A.; Kepecs, A.

10.1101/135707 — neuroscience — Posted on 2017-05-09

971 Interpreting Temporal Fluctuations In Resting-State Functional Connectivity MRI

Liegeois, R.; Laumann, T. O.; Snyder, A. Z.; Zhou, H. J.; Yeo, B. T. T.

10.1101/135681 — neuroscience — Posted on 2017-05-09

972 Theory For Transitions Between Exponential And Stationary Phases: Universal Laws For Lag Time

Himeoka, Y.; Kaneko, K.

10.1101/135665 — systems biology — Posted on 2017-05-09

973 Brain Structural Differences Between 73- And 92-Year Olds Matched For Childhood Intelligence, Social Background, And Intracranial Volume

Ritchie, S. J.; Dickie, D. A.; Cox, S. R.; Valdes Hernandez, M. C.; Pattie, A.; Anblagan, D.; Redmond, P.; Royle, N. A.; Corley, J.; Munoz Maniega, S.; Taylor, A. M.; Karama, S.; Booth, T.; Gow, A. J.; Starr, J. M.; Bastin, M. E.; Wardlaw, J. M.; Deary, I. J.

10.1101/135871 — neuroscience — Posted on 2017-05-09

974 Random Sequences Rapidly Evolve Into De Novo Promoters

Yona, A. H.; Alm, E. J.; Gore, J.

10.1101/111880 — molecular biology — Posted on 2017-05-09

975 Wolbachia Effects On Rift Valley Fever Virus Infection In Culex tarsalis Mosquitoes

Dodson, B. L.; Andrews, E. S.; Turell, M. J.; Rasgon, J.

10.1101/135889 — microbiology — Posted on 2017-05-09

976 Evolution Of Pre-Copulatory And Post-Copulatory Strategies Of Inbreeding Avoidance And Associated Polyandry

Duthie, A. B.; Bocedi, G.; Germain, R. R.; Reid, J. M.

10.1101/136093 — evolutionary biology — Posted on 2017-05-09

977 CRISPR-Cas9 Genome Editing In Human Cells Works Via The Fanconi Anemia Pathway

Richardson, C. D.; Kazane, K. R.; Feng, S. J.; Bray, N. L.; Schaefer, A. J.; Floor, S.; Corn, J.

10.1101/136028 — cell biology — Posted on 2017-05-09

978 MAJIQ-SPEL: Web-Tool To Interrogate Classical And Complex Splicing Variations From RNA-Seq Data

Green, C.; Gazzara, M. R.; Barash, Y.

10.1101/136077 — bioinformatics — Posted on 2017-05-09

979 Prominent Features Of The Amino Acid Mutation Landscape In Cancer

Szpiech, Z. A.; Strauli, N. B.; White, K. A.; Ruiz, D. G.; Jacobson, M. P.; Barber, D. L.; Hernandez, R. D.

10.1101/136002 — bioinformatics — Posted on 2017-05-09

980 A Neuropeptide Signaling System That Rapidly Enforces Paternity In The Aedes aegypti Mosquito

Duvall, L. B.; Basrur, N. S.; Molina, H.; McMeniman, C. J.; Vosshall, L. B.

10.1101/136150 — neuroscience — Posted on 2017-05-09

981 DNA.Land: A Digital Biobank Using A Massive Crowdsourcing Approach

Yuan, J.; Gordon, A.; Speyer, D.; Aufrichtig, R.; Zielinski, D.; Pickrell, J.; Erlich, Y.

10.1101/135715 — bioinformatics — Posted on 2017-05-09

982 Human brain-derived Aβ oligomers bind to synapses and disrupt synaptic activity in a manner that requires APP

Walsh, D.; Wang, Z.; Jackson, R. J.; Hong, W.; Walter, T. M.; Moreno, A.; Liu, W.; Li, S.; Frosch, M. P.; Slutsky, I.; Young-Pearse, T.; Spires-Jones, T. L.

10.1101/135673 — neuroscience — Posted on 2017-05-09

983 High-risk Autism Spectrum Disorder Utah pedigrees: a novel Shared Genomic Segments analysis.

Darlington, T.; Bilder, D.; Morgan, J.; Jerominski, L.; Rajamanickam, V.; Sargent, R.; Camp, N. J.; Coon, H. H.

10.1101/134957 — genetics — Posted on 2017-05-09

984 Comparative Genomics Of Apomictic Root-Knot Nematodes: Hybridization, Ploidy, And Dynamic Genome Change

Szitenberg, A.; Salazar-Jaramillo, L.; Blok, V. C.; Laetsch, D. R.; Joseph, S.; Williamson, V. M.; Blaxter, M. L.; Lunt, D. H.

10.1101/136085 — evolutionary biology — Posted on 2017-05-09

985 Exponential Growth Of The USA Overdose Epidemic

Buchanich, J. M.; Balmert, L. C.; Burke, D. S.

10.1101/134403 — epidemiology — Posted on 2017-05-09

986 Epigenome-Wide Association Study Of Asthma And Wheeze In Childhood And Adolescence

Arathimos, R.; Suderman, M.; Sharp, G. C.; Burrows, K.; Granell, R.; Tilling, K.; Gaunt, T. R.; Henderson, J.; Ring, S.; Richmond, R.; Relton, C. L.

10.1101/135301 — epidemiology — Posted on 2017-05-09

987 Vaccination Can Drive An Increase In Frequencies Of Antibiotic Resistance Among Non-Vaccine Serotypes Of Streptococcus pneumoniae

Obolski, U.; Lourenco, J.; Gupta, S.

10.1101/135863 — epidemiology — Posted on 2017-05-09

988 Flexible statistical methods for estimating and testing effects in genomic studies with multiple conditions

Urbut, S. M.; Wang, G.; Stephens, M.

10.1101/096552 — genomics — Posted on 2017-05-09

989 6S RNA supports recovery from nitrogen depletion in Synechocystis sp. PCC 6803

Heilmann, B.; Hakkila, K.; Georg, J.; Tyystjaervi, T.; Hess, W. R.; Axmann, I. M.; Dienst, D.

10.1101/134676 — molecular biology — Posted on 2017-05-09

990 Bayesian Integrated Analysis Of Multiple Types Of Rare Variants To Infer Risk Genes For Schizophrenia And Other Neurodevelopmental Disorders

Nguyen, H. T.; Dobbyn, A.; Huckins, L. M.; Ruderfer, D.; Genovese, G.; Fromer, M.; Xu, X.; Buxbaum, J.; Pinto, D.; Hultman, C.; Sklar, P.; Purcell, S. M.; He, X.; Sullivan, P. F.; Stahl, E. A.

10.1101/135293 — genomics — Posted on 2017-05-09

991 Crosslink: A Fast, Scriptable Genetic Mapper For Outcrossing Species

Vickerstaff, R. J.; Harrison, R. J.

10.1101/135277 — genetics — Posted on 2017-05-09

992 Two Loci Single Particle Trajectories Analysis: Constructing A First Passage Time Statistics Of Local Chromatin Exploration

Shukron, O.; Hauer, M.; Holcman, D.

10.1101/135012 — biophysics — Posted on 2017-05-09

993 Deconvolving sequence features that discriminate between overlapping regulatory annotations

Kakumanu, A.; Velasco, S.; Mazzoni, E. O.; Mahony, S.

10.1101/100511 — bioinformatics — Posted on 2017-05-09

994 Automated Recommendation Of Metabolite Substructures From Mass Spectra Using Frequent Pattern Mining

Mrzic, A.; Meysman, P.; Bittremieux, W.; Laukens, K.

10.1101/134189 — bioinformatics — Posted on 2017-05-09

995 Strategic exploration in human adaptive control

Schulz, E.; Klenske, E.; Bramley, N.; Speekenbrink, M.

10.1101/110486 — animal behavior and cognition — Posted on 2017-05-09

996 G protein-coupled estrogen receptor regulates heart rate by modulating thyroid hormone levels in zebrafish embryos

Romano, S. N.; Edwards, H. E.; Cui, X.; Gorelick, D. A.

10.1101/088955 — pharmacology and toxicology — Posted on 2017-05-09

997 Conditioning by Subthreshold Synaptic Input Changes the Characteristic Firing Pattern of CA3 Hippocampal Neurons

Soldado Magraner, S.; Brandalise, F.; Honnuraiah, S.; Pfeiffer, M.; Gerber, U.; Douglas, R.

10.1101/084152 — neuroscience — Posted on 2017-05-09

Francis, W. R.; Worheide, G.

10.1101/068627 — genomics — Posted on 2017-05-09

999 Deep Learning and Association Rule Mining for Predicting Drug Response in Cancer. A Personalised Medicine Approach.

Vougas, K.; Krochmal, M.; Jackson, T.; Polyzos, A.; Aggelopoulos, A.; Pateras, I. S.; Liontos, M.; Varvarigou, A.; Johnson, E. O.; Georgoulias, V.; Vlahou, A.; Townsend, P.; Thanos, D.; Bartek, J.; Gorgoulis, V. G.

10.1101/070490 — bioinformatics — Posted on 2017-05-09

1000 Precise And Predictable DNA Fragment Editing Reveals Principles Of Cas9-Mediated Nucleotide Insertion

Shou, J.; Li, J.; Wu, Q.

10.1101/135822 — genetics — Posted on 2017-05-09

1001 Systems-Level Analysis Of 32 TCGA Cancers Reveals Disease-Dependent tRNA Fragmentation Patterns And Very Selective Associations With Messenger RNAs And Repeat Elements

Rigoutsos, I.; Telonis, A. G.; Loher, P.; Magee, R.; Kirino, Y.; Pliatsika, V.

10.1101/135517 — systems biology — Posted on 2017-05-09

1002 Evolution Of Hierarchy In Bacterial Metabolic Networks

Goodman, A.; Feldman, M.

10.1101/118299 — evolutionary biology — Posted on 2017-05-09

1003 Duplication And Sub/Neofunctionalization Of malvolio, An Insect Homolog Of Nramp, In The Subsocial Beetle Nicrophorus vespilloides

Mehlferber, E. C.; Benowitz, K. M.; Roy-Zokan, E. M.; McKinney, E. C.; Cunningham, C. B.; Moore, A. J.

10.1101/135590 — evolutionary biology — Posted on 2017-05-09

1004 The Paradox Of Constant Oceanic Plastic Debris: Evidence For Evolved Microbial Biodegradation?

Sole, R.; Fontich, E.; Vidiella, B.; Duran-Nebreda, S.; Montanez, R.; Pinero, J.; Valverde, S.

10.1101/135582 — ecology — Posted on 2017-05-09

1005 Sex-Specific Changes In Gene Expression And Delayed Sex Differentiation In Response To Estrogen Pollution In Grayling (Salmonidae)

Selmoni, O. M.; Maitre, D.; Roux, J.; Wilkins, L. G. E.; Marques da Cunha, L.; Vermeirssen, E.; Knorr, S.; Robinson-Rechavi, M.; Wedekind, C.

10.1101/135210 — ecology — Posted on 2017-05-09

1006 Towards An Understanding Of Spiral Patterning In The Sargassum muticum Shoot Apex

Linardić, M.; Braybrook, S. A.

10.1101/135806 — developmental biology — Posted on 2017-05-09

1007 iREAD: A Tool For Intron Retention Detection From RNA-seq Data

Li, H.-D.; Funk, C. C.; Price, N. D.

10.1101/135624 — bioinformatics — Posted on 2017-05-09

1008 DeepMetabolism: A Deep Learning System To Predict Phenotype From Genome Sequencing

Guo, W.; Xu, Y. E.; Feng, X.

10.1101/135574 — systems biology — Posted on 2017-05-09

1009 Translational Profiling Of Microglia Reveals Artifacts Of Cell Sorting

Kang, S. S.; Baker, K. E.; Wang, X.; Kocher, J.-P.; Fryer, J. D.

10.1101/135566 — neuroscience — Posted on 2017-05-09

1010 Multiple Poliovirus-Induced Organelles Suggested By Comparison Of Spatiotemporal Dynamics Of Membranous Structures And Phosphoinositides

Oh, H. S.; Banerjee, S.; Aponte-Diaz, D.; Aligo, J.; Lodeiro, M. F.; Cameron, C. E.

10.1101/135509 — molecular biology — Posted on 2017-05-09

1011 A Comparative Study Of Endoderm Differentiation In Humans And Chimpanzees

Blake, L. E.; Thomas, S. M.; Blischak, J. D.; Hsiao, C. J.; Chavarria, C.; Myrthil, M.; Gilad, Y.; Pavlovic, B. J.

10.1101/135442 — genomics — Posted on 2017-05-09

1012 Identification of Novel Breast Tumor Expression Dimensions within the PAM50 and Discovery of a Breast Cancer Susceptibility Locus at 12q15

Madsen, M. J.; Knight, S.; Sweeney, C.; Factor, R.; Salama, M.; Rajamanickam, V.; Welm, B. E.; Arunachalam, S.; Jones, B.; Rowe, K.; Cessna, M.; Thomas, A.; Kushi, L. H.; Caan, B. J.; Bernard, P. S.; Camp, N. J.

10.1101/133397 — genetics — Posted on 2017-05-09

1013 Mitochondrial pseudogenes suggest repeated inter-species hybridization in hominid evolution.

Popadin, K.; Gunbin, K.; Peshkin, L.; Annis, S.; Kraytsberg, G.; Markuzon, N.; Ackermann, R. R.; Khrapko, K.

10.1101/134502 — evolutionary biology — Posted on 2017-05-09

1014 MutPred2: inferring the molecular and phenotypic impact of amino acid variants

Pejaver, V.; Urresti, J.; Lugo-Martinez, J.; Pagel, K. A.; Lin, G. N.; Nam, H.-J.; Mort, M.; Cooper, D. N.; Sebat, J.; Iakoucheva, L. M.; Mooney, S. D.; Radivojac, P.

10.1101/134981 — bioinformatics — Posted on 2017-05-09

1015 The Landscape Of Type VI Secretion Across Human Gut Microbiomes Reveals Its Role In Community Composition

Verster, A.; Ross, B.; Radey, M.; Bao, Y.; Goodman, A.; Mougous, J.; Borenstein, E.

10.1101/134874 — microbiology — Posted on 2017-05-08

1016 Attention is required for knowledge-based sequential grouping of syllables into words

Ding, N.; Pan, X.; Luo, C.; Su, N.; Zhang, W.; Zhang, J.

10.1101/135053 — neuroscience — Posted on 2017-05-08

1017 Distinct Temporal Filters In Mitral Cells And External Tufted Cells Of The Olfactory Bulb

Vaaga, C. E.; Westbrook, G. L.

10.1101/135541 — neuroscience — Posted on 2017-05-08

1018 Arousal Dependent Modulation Of Thalamo-Cortical Functional Interaction

Stitt, I.; Zhou, Z. C.; Radtke-Schuller, S.; Frohlich, F.

10.1101/135376 — neuroscience — Posted on 2017-05-08

1019 Fast Periodic Stimulation (FPS): A Highly Effective Approach In fMRI Brain Mapping

Gao, X.; Gentile, F.; Rossion, B.

10.1101/135087 — neuroscience — Posted on 2017-05-08

1020 Gamma-Band Resonance Of Visual Cortex To Optogenetic Stimulation

Ni, J.; Lewis, C.; Wunderle, T.; Jendritza, P.; Diester, I.; Fries, P.

10.1101/135467 — neuroscience — Posted on 2017-05-08

1021 Interacting Learning Processes During Skill Acquisition: Learning To Control With Gradually Changing System Dynamics

Ludolph, N.; Giese, M. A.; Ilg, W.

10.1101/135095 — neuroscience — Posted on 2017-05-08

1022 Inverse Modeling For MEG/EEG Data

Sorrentino, A.; Piana, M.

10.1101/135269 — neuroscience — Posted on 2017-05-08

1023 Low-Cost HPV Screening And The Prevalence Of Cervical Infection In Asymptomatic Populations In Guatemala

Lou, H.; Gharzouzi, E.; Guerra, S. P.; Domgue, J. F.; Sawitzke, J.; Villagran, G.; Garland, L.; Boland, J.; Wagner, S.; Martinez, J.; Rosas, H.; Troxler, J.; McMillen, H.; Kessing, B.; Alvirez, E.; Castillo, M.; Morales, H.; Argueta, V.; Rosingh, A.; van Aerde-van Nunen, F.; Lopez, G.; Schiffman, M.; Dean, M.; Orozco, R.

10.1101/134775 — molecular biology — Posted on 2017-05-08

1024 Meta Analysis Of Microbiome Studies Identifies Shared And Disease-Specific Patterns

Duvallet, C.; Gibbons, S. M.; Gurry, T.; Irizarry, R. A.; Alm, E. J.

10.1101/134031 — microbiology — Posted on 2017-05-08

1025 Ultra-Accurate Genome Sequencing And Haplotyping Of Single Human Cells

Chu, W. K.; Edge, P.; Lee, H. S.; Bansal, V.; Bafna, V.; Huang, X.; Zhang, K.

10.1101/135384 — genomics — Posted on 2017-05-08

1026 Bayesian Integrated Analysis Of Multiple Types Of Rare Variants To Infer Risk Genes For Schizophrenia And Other Neurodevelopmental Disorders

Nguyen, H. T.; Dobbyn, A.; Huckins, L. M.; Ruderfer, D.; Genovese, G.; Fromer, M.; Xu, X.; Buxbaum, J.; Hultman, C.; Sklar, P.; Purcell, S. M.; He, X.; Sullivan, P. F.; Stahl, E. A.

10.1101/135293 — genomics — Posted on 2017-05-08

1027 Revealing Complete Complex KIR Haplotypes Phased By Long-Read Sequencing Technology

Roe, D.; Vierra-Green, C.; Pyo, C.-W.; Eng, K.; Hall, R.; Kuang, R.; Spellman, S.; Ranade, S.; Geraghty, D.; Maiers, M.

10.1101/135426 — genomics — Posted on 2017-05-08

1028 Kinship Governs Fertility With Pre- And Post-Zygotic Mechanisms Mediated By Match Of Methylation Patterns

Herbert, M. L.

10.1101/135327 — genetics — Posted on 2017-05-08

1029 Genetic Epidemiology And Mendelian Randomization For Informing Disease Therapeutics: Conceptual And Methodological Challenges

Paternoster, L.; Tilling, K. M.; Davey Smith, G.

10.1101/126599 — genetics — Posted on 2017-05-08

1030 Crosslink: A Fast, Scriptable Genetic Mapper For Outcrossing Species

Vickerstaff, R. J.; Harrison, R. J.

10.1101/135277 — genetics — Posted on 2017-05-08

1031 Genome Comparisons Indicate Recent Transfer Of wRi-Like Wolbachia Between Sister Species Drosophila suzukii And D. subpulchrella

Conner, W. R.; Blaxter, M. L.; Anfora, G.; Ometto, L.; Rota-Stabelli, O.; Turelli, M.

10.1101/135475 — evolutionary biology — Posted on 2017-05-08

1032 Genome And Epigenome Engineering CRISPR Toolkit For Probing In Vivo cis-Regulatory Interactions In The Chicken Embryo

Williams, R. M.; Senanayake, U.; Artibani, M.; Taylor, G. O.; Wells, D.; Ahmed, A. A.; Sauka-Spengler, T.

10.1101/135525 — developmental biology — Posted on 2017-05-08

1033 The Human Cell Atlas

Regev, A.; Teichmann, S.; Lander, E. S.; Amit, I.; Benoist, C.; Birney, E.; Bodenmiller, B.; Campbell, P.; Carninci, P.; Clatworthy, M.; Clevers, H.; Deplancke, B.; Dunham, I.; Eberwine, J.; Eils, R.; Enard, W.; Farmer, A.; Fugger, L.; Gottgens, B.; Hacohen, N.; Haniffa, M.; Hemberg, M.; Kim, S. K.; Klenerman, P.; Kriegstein, A.; Lein, E.; Linnarsson, S.; Lundeberg, J.; Majumder, P.; Marioni, J.; Merad, M.; Mhlanga, M.; Nawijn, M.; Netea, M.; Nolan, G.; Pe'er, D.; Philipakis, A.; Ponting, C. P.; Quake, S. R.; Reik, W.; Rozenblatt-Rosen, O.; Sanes, J. R.; Satija, R.; Shumacher, T.; Shalek, A. K

10.1101/121202 — cell biology — Posted on 2017-05-08

1034 OncoScore: An R Package To Measure The Oncogenic Potential Of Genes

Ramazzotti, D.; De Sano, L.; Spinelli, R.; Piazza, R.; Gambacorti Passerini, C.

10.1101/135483 — bioinformatics — Posted on 2017-05-08

1035 Systemic Activation Coordinates The Heat Shock Response Of The Insulin/IGF-1 Pathway In Caenorhabditis elegans

Kopito, R. B.; Watkins, K.; Levine, E.

10.1101/131375 — systems biology — Posted on 2017-05-08

1036 Coordinated Changes In The Accumulation Of Metal Ions In Maize (Zea mays ssp. mays L.) In Response To Inoculation With The Arbuscular Mycorrhizal Fungus Funneliformis mosseae

Flores-Ramirez, M. R.; Rellan-Alvarez, R.; Wozniak, B.; Gebreselassie, M.-N.; Jakobsen, I.; Olalde-Portugal, V.; Baxter, I.; Paszkowski, U.; Sawers, R.

10.1101/135459 — plant biology — Posted on 2017-05-08

1037 Dynamical networks: finding, measuring, and tracking neural population activity using network science

Humphries, M. D.

10.1101/115485 — neuroscience — Posted on 2017-05-08

1038 Learning multiple variable-speed sequences in striatum via cortical tutoring

Murray, J. M.; Escola, G. S.

10.1101/110072 — neuroscience — Posted on 2017-05-08

1039 Basal Ganglia Control Of Reflexive Saccades: A Computational Model Integrating Physiology Anatomy And Behaviour

Cope, A.; Chambers, J. M.; Prescott, T. J.; Gurney, K. N.

10.1101/135251 — neuroscience — Posted on 2017-05-08

1040 The Equivalent Arc Ratio For Auditory Space

Brimijoin, W. O.

10.1101/134700 — neuroscience — Posted on 2017-05-08

1041 6S RNA Supports Recovery From Nitrogen Depletion In Synechocystis Sp. PCC 6803

Heilmann, B.; Hakkila, K.; Georg, J.; Tyystjaervi, T.; Hess, W. R.; Axmann, I. M.; Dienst, D.

10.1101/134676 — molecular biology — Posted on 2017-05-08

1042 Ki-67 Contributes To Normal Cell Cycle Progression And Inactive X Heterochromatin In p21 Checkpoint-Proficient Human Cells

Sun, X.; Bizhanova, A.; Matheson, T. D.; Yu, J.; Zhu, L. J.; Kaufman, P. D.

10.1101/134767 — molecular biology — Posted on 2017-05-08

1043 Heat Shock Protein 70 (Hsp70) Is Involved In The Zika Virus Cellular Infection Process

Pujhari, S.; Macias, V. M.; Nissly, R. H.; Nomura, M.; Kuchipudi, S. V.; Rasgon, J. L.

10.1101/135350 — microbiology — Posted on 2017-05-08

1044 Multifactorial Chromosomal Variants Regulate Polymyxin Resistance In Extensively Drug-Resistant Klebsiella pneumoniae

Pitt, M.; Elliott, A.; Cao, M. D.; Ganesamoorthy, D.; Karaiskos, I.; Giamarellou, H.; Abboud, C. S.; Blaskovich, M. A. T.; Cooper, M. A.; Coin, L. J. M.

10.1101/134684 — microbiology — Posted on 2017-05-08

1045 Epha2, An Epithelial Cell Pattern Recognition Receptor For Fungal β-Glucans

Swidergall, M.; Solis, N. V.; Filler, S. G.

10.1101/135434 — microbiology — Posted on 2017-05-08

1046 Frequent Non-Allelic Gene Conversion On The Human Lineage And Its Effect On The Divergence Of Gene Duplicates

Harpak, A.; Lan, X.; Gao, Z.; Pritchard, J. K.

10.1101/135152 — genomics — Posted on 2017-05-08

1047 Quantitative RNAseq Meta Analysis Of Alternative Exon Usage In C. elegans

Tourasse, N. J.; Millet, J. R. M.; Dupuy, D.

10.1101/134718 — genomics — Posted on 2017-05-08

1048 Copb2 Is Essential For Embryogenesis And Hypomorphic Mutations Cause Human Microcephaly

DiStasio, A.; Driver, A.; Sund, K.; Donlin, M.; Pooya, S.; Kline-Fath, B.; Kaufman, K.; Prows, C.; Schorry, E.; DasGupta, B.; Stottmann, R.

10.1101/135236 — genetics — Posted on 2017-05-08

1049 Space use and movement of jaguar (Panthera onca) in western Paraguay

McBride, R. T.; Thompson, J. J.

10.1101/119412 — ecology — Posted on 2017-05-08

1050 Sex Differentiation In Grayling (Salmonidae) Goes Through An All-Male Stage And Is Delayed In Genetic Males Who Instead Grow Faster

Maitre, D.; Selmoni, O. M.; Uppal, A.; Marques da Cunha, L.; Wilkins, L. G. E.; Roux, J.; Mobley, K. B.; Knorr, S.; Robinson-Rechavi, M.; Wedekind, C.

10.1101/135194 — developmental biology — Posted on 2017-05-08

1051 Dynamic Current Clamp Experiments Define The Functional Roles Of IK1 And Ito,f In Human Induced Pluripotent Stem Cell Derived Cardiomyocytes

Marrus, S.; Springer, S.; Johnson, E.; Martinez, R.; Dranoff, E.; Mellor, R.; Yamada, K.

10.1101/135400 — cell biology — Posted on 2017-05-08

1052 Insight Into The Mechanism Of Protein Thermostability Based On The Residue Interaction Degrees

Ge, H.; Chu, Y.; Zhang, G.

10.1101/135319 — bioinformatics — Posted on 2017-05-08

1053 Micropatterned Substrates To Promote And Dissect Reprogramming Of Human Somatic Cells

Carlson-Stevermer, J.; Harkness, T.; Prestil, R.; Seymour, S.; Knight, G.; Ashton, R.; Saha, K.

10.1101/111369 — bioengineering — Posted on 2017-05-08

1054 Positive Sexual Imprinting For Human Eye Color

DeBruine, L. M.; Jones, B. C.; Little, A. C.

10.1101/135244 — animal behavior and cognition — Posted on 2017-05-08

1055 A space-jump derivation for non-local models of cell-cell adhesion and non-local chemotaxis

Buttenschoen, A.; Hillen, T.; Gerisch, A.; Painter, K.

10.1101/093617 — systems biology — Posted on 2017-05-08

1056 Excitatory Motor Neurons Function As Central Pattern Generators In An Anatomically Compressed Motor Circuit For Reverse Locomotion

Gao, S.; Guan, S. A.; Fouad, A. D.; Meng, J.; Huang, Y.-C.; Li, Y.; Alcaire, S.; Hung, W.; Kawano, T.; Lu, Y.; Qi, Y. B.; Jin, Y.; Alkema, M.; Fang-Yen, C.; Zhen, M.

10.1101/135418 — neuroscience — Posted on 2017-05-08

1057 Evidence for time division multiplexing of multiple simultaneous itemsin a sensory coding bottleneck

Caruso, V. C.; Mohl, J. T.; Glynn, C.; Lee, J.; Willett, S. M.; Zaman, A.; Estrada, R.; Tokdar, S.; Groh, J. M.

10.1101/107185 — neuroscience — Posted on 2017-05-08

1058 Neuronal Inhibition Of The Autophagy Nucleation Complex Extends Lifespan In Post-Reproductive C. elegans

Wilhelm, T.; Byrne, J.; Medina, R.; Kolundzic, E.; Geisinger, J.; Hajduskova, M.; Tursun, B.; Richly, H.

10.1101/135178 — molecular biology — Posted on 2017-05-08

1059 Missing Data and Technical Variability in Single-Cell RNA- Sequencing Experiments

Hicks, S. C.; Townes, F. W.; Teng, M.; Irizarry, R. A.

10.1101/025528 — genomics — Posted on 2017-05-08

1060 Deep Learning and Association Rule Mining for Predicting Drug Response in Cancer. A Personalised Medicine Approach.

10.1101/070490 — bioinformatics — Posted on 2017-05-08

1061 Adaptive mutations in RNA polymerase and the transcriptional terminator Rho have similar effects on Escherichia coli gene expression

Gonzalez-Gonzalez, A.; Rodriguez-Verdugo, A.; Hug, S.; Suresh Patel, J.; Gaut, B.

10.1101/089268 — evolutionary biology — Posted on 2017-05-08

1062 Assessment Of The Potential Role Of Streptomyces In Cave Moonmilk Formation

Maciejewska, M.; Adam, D.; Naome, A.; Martinet, L.; Tenconi, E.; Calusinska, M.; Delfosse, P.; Hanikenne, M.; Baurain, D.; Compere, P.; Carnol, M.; Barton, H.; Rigali, S.

10.1101/131847 — microbiology — Posted on 2017-05-08

1063 Mapping Quantitative Trait Loci Underlying Circadian Light Sensitivity In Drosophila

Adewoye, A. B.; Nuzhdin, S.; Tauber, E.

10.1101/135129 — genetics — Posted on 2017-05-07

1064 Whole-Brain Serial-Section Electron Microscopy In Larval Zebrafish

Hildebrand, D. G. C.; Cicconet, M.; Torres, R. M.; Choi, W.; Quan, T. M.; Moon, J.; Wetzel, A. W.; Champion, A. S.; Graham, B. J.; Randlett, O.; Plummer, G. S.; Portugues, R.; Bianco, I. H.; Saalfeld, S.; Baden, A. D.; Lillaney, K.; Burns, R.; Vogelstein, J. T.; Schier, A. F.; Lee, W.-C. A.; Jeong, W.-K.; Lichtman, J. W.; Engert, F.

10.1101/134882 — neuroscience — Posted on 2017-05-07

1065 Signal Peptide Hydrophobicity Modulates Interaction With The Twin-Arginine Translocase

Huang, Q.; Palmer, T.

10.1101/135103 — microbiology — Posted on 2017-05-07

1066 The Genomic Landscape Of Tree Rot In Phellinus noxius And Its Hymenochaetales Members

Chung, C.-L.; Lee, J. T.; Akiba, M.; Lee, H.-H.; Kuo, T.-H.; Liu, D.; Ke, H.-M.; Yokoi, T.; Roa, M. B.; Lu, M. J.; Chang, Y.-Y.; Ann, P.-J.; Tsai, J.-N.; Chen, C.-Y.; Tzean, S.-S.; Ota, Y.; Hattori, T.; Sahashi, N.; Liou, R.-F.; Kikuchi, T.; Tsai, I. J.

10.1101/132712 — genomics — Posted on 2017-05-07

1067 A New Big-Data Paradigm For Target Identification And Drug Discovery

Madhukar, N. S.; Khade, P.; Huang, L.; Gayvert, K.; Galletti, G.; Stogniew, M.; Allen, J. E.; Giannakakou, P.; Elemento, O.

10.1101/134973 — pharmacology and toxicology — Posted on 2017-05-07

1068 Malthusian Catastrophe: Species Extinction Caused By Oversized Population

Pan, X.

10.1101/134221 — ecology — Posted on 2017-05-07

1069 Characterization Of Copper Complex Nanoparticles Synthesized By Plant Polyphenols

Wang, Z.; An, P.

10.1101/134940 — biochemistry — Posted on 2017-05-07

1070 Research Waste In ME/CFS

Lee, S.

10.1101/133926 — scientific communication and education — Posted on 2017-05-07

1071 Untuned But Not Irrelevant: A Role For Untuned Neurons In Sensory Information Coding

Zylberberg, J.

10.1101/134379 — neuroscience — Posted on 2017-05-07

1072 Accurate Cytogenetic Biodosimetry Through Automation Of Dicentric Chromosome Curation And Metaphase Cell Selection

Liu, J.; Li, Y.; Wilkins, R.; Flegal, F.; Knoll, J. H. M.; Rogan, P. K.

10.1101/120410 — genetics — Posted on 2017-05-07

1073 Invasion fitness for gene-culture co-evolution in family-structured populations and an application to cumulative culture under vertical transmission

Mullon, C.; Lehmann, L.

10.1101/102624 — evolutionary biology — Posted on 2017-05-07

1074 Missing the point (estimate): Bayesian and likelihood phylogenetic reconstructions of morphological characters produce concordant inferences. A comment on Puttick et al.

Brown, J. W.; Parins-Fukuchi, C.; Stull, G. W.; Vargas, O. M.; Smith, S. A.

10.1101/114793 — evolutionary biology — Posted on 2017-05-07

1075 RNA Stores Tau Reversibly in Complex Coacervates

Zhang, X.; Lin, Y.; Eschmann, N. A.; Zhou, H.; Rauch, J.; Hernandez, I.; Guzman, E.; Kosik, K. S.; Han, S.

10.1101/111245 — biophysics — Posted on 2017-05-07

1076 LEAP: A Generalization Of The Landau-Vishkin Algorithm With Custom Gap Penalties

Xin, H.; Kim, J.; Nahar, S.; Alkan, C.; Mutlu, O.

10.1101/133157 — bioinformatics — Posted on 2017-05-07

1077 Effect Of Initial Body Orientation On Escape Probability In Prey Fish Escaping From Predators

Kimura, H.; Kawabata, Y.

10.1101/134494 — animal behavior and cognition — Posted on 2017-05-07

1078 Two Loci Single Particle Trajectories Analysis: Constructing A First Passage Time Statistics Of Local Chromatin Exploration

Shukron, O.; Holcman, D.

10.1101/135012 — biophysics — Posted on 2017-05-06

1079 Homology Modeling In A Dynamical World

Monzon, A. M.; Zea, D. J.; Marino-Buslje, C.; Parisi, G.

10.1101/135004 — bioinformatics — Posted on 2017-05-06

1080 Systemic Activation Coordinates The Heat Shock Response Of The Insulin/IGF-1 Pathway In Caenorhabditis elegans

Kopito, R. B.; Watkins, K.; Levine, E.

10.1101/131375 — systems biology — Posted on 2017-05-06

1081 DeepDeath: Learning To Predict The Underlying Cause Of Death With Big Data

Hassanzadeh, H. R.; Sha, Y.; Wang, M. D.

10.1101/134965 — pathology — Posted on 2017-05-06

1082 EyeBallGUI: A Tool For Visual Inspection And Binary Marking of Multi-Channel Bio-Signals

Mohr, K.; Nasseroleslami, B.; Iyer, P. M.; Hardiman, O.; Lalor, E. C.

10.1101/129437 — neuroscience — Posted on 2017-05-06

1083 Heterogeneity Among Estimates Of The Core Genome And Pan-Genome In Different Pneumococcal Populations

van Tonder, A. J.; Bray, J. E.; Jolley, K. A.; Quirk, S. J.; Haraldsson, G.; Maiden, M. C. J.; Bentley, S. D.; Haraldsson, A.; Erlendsdottir, H.; Kristinsson, K. G.; Brueggemann, A. B.

10.1101/133991 — genomics — Posted on 2017-05-06

1084 Targeting xCT-Mediated Glutamate Release Normalizes Tumor Angiogenesis In The Brain

Fan, Z.; Broggini, T.; Yakubov, E.; Sehm, T.; Schuermann, S.; Meyer, E. P.; Stankovic, N. D.; Schmidt, M. H.; Stampanoni, M.; Czabanka, M.; Nitsch, R.; Buchfelder, M.; Friedrich, O.; Eyupoglu, I. Y.; Savaskan, N.

10.1101/134924 — cell biology — Posted on 2017-05-06

1085 A Carbon Nanotube Optical Reporter Maps Endolysosomal Lipid Flux

Jena, P. V.; Roxbury, D.; Galassi, T. V.; Akkari, L.; Horoszko, C. P.; Iaea, D. B.; Budhathoki-Uprety, J.; Pipalia, N. H.; Haka, A. S.; Harvey, J. D.; Mittal, J.; Maxfield, F. R.; Joyce, J. A.; Heller, D. A.

10.1101/134999 — bioengineering — Posted on 2017-05-06

1086 Untuned But Not Irrelevant: A Role For Untuned Neurons In Sensory Information Coding

Zylberberg, J.

10.1101/134379 — neuroscience — Posted on 2017-05-06

1087 Simultaneous measurement of chromatin accessibility, DNA methylation, and nucleosome phasing in single cells

Pott, S.

10.1101/061739 — genomics — Posted on 2017-05-06

1088 Tumor-infiltrating immune repertoires captured by single-cell barcoding in emulsion

Briggs, A. W.; Goldfless, S. J.; Timberlake, S.; Belmont, B. J.; Clouser, C. R.; Koppstein, D.; Sok, D.; Heiden, J. V. A.; Tamminen, M. V.; Kleinstein, S. H.; Burton, D. R.; Church, G. M.; Vigneault, F.

10.1101/134841 — immunology — Posted on 2017-05-05

1089 The unfolded protein response turns from pro-survival to pro-death to cap the extent of endoplasmic reticulum expansion

Orsi, A.; Bakunts, A.; Lari, F.; Tade, L.; Cattaneo, A.; Sitia, R.; Raimondi, A.; Bachi, A.; van Anken, E.; Vitale, M.

10.1101/134726 — cell biology — Posted on 2017-05-05

1090 Optogenetic Characterization Of CeA CRF Pathways In Alcohol Dependence

de Guglielmo, G.; Kallupi, M.; Pomrenze, M.; Crawford, E.; Simpson, S.; Schweitzer, P.; Koob, G. F.; Messing, R. O.; George, O.

10.1101/134759 — neuroscience — Posted on 2017-05-05

1091 Food Webs Over Time: Evaluating The Variability Of Degree Distribution On Ecological Networks

Lopez, D.; Camus, P.; Valdivia, N.; Estay, S.

10.1101/134833 — ecology — Posted on 2017-05-05

1092 The Effect Of Nipped-B-Like (Nipbl) Haploinsufficiency On Genome-Wide Cohesin Binding And Target Gene Expression: Modeling Cornelia de Lange Syndrome

Newkirk, D.; Chen, Y.-Y.; Chien, R.; Zeng, W.; Biesinger, J.; Flowers, E.; Kawauchi, S.; Santos, R.; Calof, A.; Lander, A.; Xie, X.; Yokomori, K.

10.1101/134825 — developmental biology — Posted on 2017-05-05

1093 Concomitant Duplication Of The Cid And Cenp-C Genes In Drosophila

Teixeira, J. R.; Dias, G. B.; Svartman, M.; Ruiz, A.; Kuhn, G. C. S.

10.1101/134817 — genetics — Posted on 2017-05-05

1094 Random Walk With Restart On Multiplex And Heterogeneous Biological Networks

Valdeolivas, A.; Tichit, L.; Navarro, C.; Perrin, S.; Odelin, G.; Levy, N.; Cau, P.; Remy, E.; Baudot, A.

10.1101/134734 — systems biology — Posted on 2017-05-05

1095 Reverse Engineering of Trascriptional Networks Uncovers Candidate Master Regulators Governing Neuropathology of Schizophrenia

Doostparast Torshizi, A.; Armoskus, C.; Zhang, S.; Moy, W.; Evgrafov, O. V.; Duan, J.; Knowles, J. A.; Wang, K.

10.1101/133363 — neuroscience — Posted on 2017-05-05

1096 Transcriptomic Correlates Of Neuron Electrophysiological Diversity

Tripathy, S. J.; Toker, L.; Li, B.; Crichlow, C.-L.; Tebaykin, D.; Mancarci, B. O.; Pavlidis, P.

10.1101/134791 — neuroscience — Posted on 2017-05-05

1097 Ki-67 Contributes To Normal Cell Cycle Progression And Inactive X Heterochromatin In p21 Checkpoint-Proficient Human Cells

Sun, X.; Bizhanova, A.; Matheson, T. D.; Yu, J.; Zhu, J. L.; Kaufman, P. D.

10.1101/134767 — molecular biology — Posted on 2017-05-05

1098 Cells With Treg-Specific FOXP3 Demethylation But Low CD25 Are Prevalent In Autoimmunity

Ferreira, R. C.; Simons, H. Z.; Thompson, W.; Rainbow, D. B.; Yang, X.; Cutler, A. J.; Oliveira, J.; Dopico, X. C.; Smyth, D. J.; Savinykh, N.; Mashar, M.; Vyse, T.; Dunger, D. B.; Baxendale, H.; Chandra, A.; Wallace, C.; Todd, J. A.; Wicker, L. S.; Pekalski, M. L.

10.1101/134692 — immunology — Posted on 2017-05-05

1099 Naturally-segregating Variation at Ugt86Dd Contributes to Nicotine Resistance in Drosophila melanogaster

Highfill, C.; Tran, J.; Nguyen, S.; Moldenhauer, T.; Wang, X.; Macdonald, S. J.

10.1101/134429 — genetics — Posted on 2017-05-05

1100 Extending Causality Tests With Genetic Instruments: An Integration Of Mendelian Randomization And The Classical Twin Design

Minica, C. C.; Dolan, C. V.; Boomsma, D. I.; de Geus, E.; Neale, M. C.

10.1101/134585 — genetics — Posted on 2017-05-05

1101 Spindle assembly checkpoint strength is governed by cell size and PAR-mediated cell fate determination in C. elegans

Gerhold, A.

10.1101/134809 — cell biology — Posted on 2017-05-05

1102 FCS In Closed Systems And Application For Membrane Nanotubes

Jiang, Y.; Melnykov, A.; Elson, E. L.

10.1101/134742 — biophysics — Posted on 2017-05-05

1103 Metagenomic binning through low density hashing

Luo, Y.; Yu, Y. W.; Zeng, J.; Berger, B.; Peng, J.

10.1101/133116 — bioinformatics — Posted on 2017-05-05

1104 A Migratory Divide In The Painted Bunting (Passerina ciris)

Battey, C. J.; Linck, E. B.; Epperly, K. L.; French, C.; Slager, D. L.; Sykes, P. W.; Klicka, J.

10.1101/132910 — zoology — Posted on 2017-05-05

1105 Sensory tuning does not match behavioral relevance of communication signals in free-living weakly electric fish

Henninger, J.; Kirschbaum, F.; Grewe, J.; Krahe, R.; Benda, J.

10.1101/114249 — neuroscience — Posted on 2017-05-05

1106 A High Resolution Whole Brain Imaging Using Oblique Light Sheet Tomography

Narasimhan, A.; Umadevi Venkataraju, K.; Mizrachi, J.; Albeanu, D. F.; Osten, P.

10.1101/132423 — neuroscience — Posted on 2017-05-05

1107 The genetic legacy of Zoroastrianism in Iran and India: Insights into population structure, gene flow and selection.

Lopez, S.; Thomas, M. G.; van Dorp, L.; Ansari-Pour, N.; Stewart, S.; Jones, A. L.; Jelinek, E.; Chikhi, L.; Parfitt, T.; Bradman, N.; Weale, M. E.; Hellenthal, G.

10.1101/128272 — genomics — Posted on 2017-05-05

1108 Optimizing Pedigrees: Using a Biasing System to Determine Likely Inheritance Systems

Ang, J. Y.

10.1101/116160 — genetics — Posted on 2017-05-05

1109 Chromosomal inversions drive chromosome arm specific patterns of polymorphism in the major African malaria vector, Anopheles funestus

Kamdem, C.; Fouet, C.; White, B. J.

10.1101/068205 — evolutionary biology — Posted on 2017-05-05

1110 Meiotic Genes In Colpodean Ciliates Support Secretive Sexuality

Dunthorn, M.; Zufall, R. A.; Chi, J.; Paszkiewicz, K.; Moore, K.; Mahe, F.

10.1101/132472 — evolutionary biology — Posted on 2017-05-05

1111 TRPV1 activation relies on hydration/dehydration of nonpolar cavities

Kasimova, M. A.; Yazici, A.; Yudin, Y.; Granata, D.; Klein, M. L.; Rohacs, T.; Carnevale, V.

10.1101/114546 — biophysics — Posted on 2017-05-05

1112 LEAP: A Generalization Of The Landau-Vishkin Algorithm With Custom Gap Penalties

Xin, H.; Kim, J.; Nahar, S.; Kingsford, C.; Alkan, C.; Mutlu, O.

10.1101/133157 — bioinformatics — Posted on 2017-05-05

1113 Organization Of The Drosophila Larval Visual Circuit

Larderet, I.; Fritsch, P.; Gendre, N.; Maier, L.; Fetter, R. D.; Schneider-Mizell, C.; Truman, J.; Zlatic, M.; Cardona, A.; Sprecher, S.

10.1101/133686 — neuroscience — Posted on 2017-05-05

1114 Omics-Based Hybrid Prediction In Maize

Westhues, M.; Schrag, T. A.; Heuer, C.; Thaller, G.; Utz, F. H.; Schipprack, W.; Thiemann, A.; Seifert, F.; Ehret, A.; Schlereth, A.; Stitt, M.; Nikoloski, Z.; Willmitzer, L.; Schon, C. C.; Scholten, S.; Melchinger, A. E.

10.1101/134668 — genetics — Posted on 2017-05-05

1115 The Stratification Of Major Depressive Disorder Into Genetic Subgroups

Howard, D. M.; Clarke, T.-K.; Adams, M. J.; Hafferty, J. D.; Wigmore, E. M.; Zeng, Y.; Hall, L. S.; Gibson, J.; Boutin, T. S.; Hayward, C.; Thomson, P. A.; Porteous, D. J.; Smith, B. H.; Murray, A. D.; MDD Working Group of the PGC, ; Haley, C. S.; Deary, I. J.; Whalley, H. C.; McIntosh, A. M.

10.1101/134601 — genetics — Posted on 2017-05-05

1116 Mathematical Model For Plant-Insect Interaction With Dynamic Response To PAD4-BIK1 Interaction And Effect Of BIK1 Inhibition

Kumar, S.; Ahmad, S.; Siddiqi, M. I.; Raza, K.

10.1101/134619 — systems biology — Posted on 2017-05-05

1117 The Equivalent Arc Ratio For Auditory Space

Brimijoin, W. O.

10.1101/134700 — neuroscience — Posted on 2017-05-05

1118 Fine Stratification Of Microbial Communities Through A Metagenomic Profile Of The Photic Zone

Haro-Moreno, J. M.; Lopez-Perez, M.; de la Torre, J.; Picazo, A.; Camacho, A.; Rodriguez-Valera, F.

10.1101/134635 — microbiology — Posted on 2017-05-05

1119 Consequences Of Natural Perturbations In The Human Plasma Proteome

Sun, B. B.; Maranville, J. C.; Peters, J. E.; Stacey, D.; Staley, J. R.; Blackshaw, J.; Burgess, S.; Jiang, T.; Paige, E.; Surendran, P.; Oliver-Williams, C.; Kamat, M. A.; Prins, B. P.; Wilcox, S. K.; Zimmerman, E. S.; Chi, A.; Bansal, N.; Spain, S. L.; Wood, A. M.; Morrell, N. W.; Bradley, J. R.; Janjic, N.; Roberts, D. J.; Ouwehand, W. H.; Todd, J. A.; Soranzo, N.; Suhre, K.; Paul, D. S.; Fox, C. S.; Plenge, R. M.; Danesh, J.; Runz, H.; Butterworth, A. S.

10.1101/134551 — genomics — Posted on 2017-05-05

1120 Selecting Short DNA Fragments In Plasma Improves Detection Of Circulating Tumour DNA

Mouliere, F.; Piskorz, A. M.; Chandrananda, D.; Moore, E.; Morris, J.; Smith, C. G.; Goranova, T.; Heider, K.; Mair, R.; Supernat, A.; Gounaris, I.; Ros, S.; Wan, J. C. M.; Jimenez-Linan, M.; Gale, D.; Brindle, K.; Massie, C. E.; Parkinson, C. A.; Brenton, J. D.; Rosenfeld, N.

10.1101/134437 — genomics — Posted on 2017-05-05

1121 Genetic Instrumental Variable (GIV) Regression: Explaining Socioeconomic And Health Outcomes In Non-Experimental Data

DiPrete, T. A.; Burik, C.; Koellinger, P.

10.1101/134197 — genetics — Posted on 2017-05-05

1122 Differential Strengths Of Molecular Determinants Guide Environment Specific Mutational Fates

Dandage, R.; Pandey, R.; Jayaraj, G.; Chakraborty, K.

10.1101/134569 — evolutionary biology — Posted on 2017-05-05

1123 Parallel Altitudinal Clines Reveal Adaptive Evolution Of Genome Size In Zea mays

Bilinski, P.; Albert, P. S.; Berg, J. J.; Birchler, J.; Grote, M.; Lorant, A.; Quezada, J.; Swarts, K.; Yang, J.; Ross-Ibarra, J.

10.1101/134528 — evolutionary biology — Posted on 2017-05-05

1124 Vimentin Plays A Functional Role In Mammary Gland Regeneration

Virtakoivu, R.; Peuhu, E.; Mai, A.; Warri, A.; Ivaska, J.

10.1101/134544 — developmental biology — Posted on 2017-05-05

1125 A Deep Learning And Novelty Detection Framework For Rapid Phenotyping In High-Content Screening

Sommer, C.; Hoefler, R.; Samwer, M.; Gerlich, D. W.

10.1101/134627 — cell biology — Posted on 2017-05-05

1126 Differential Proportionality - A Normalization-Free Approach To Differential Gene Expression

Erb, I.; Quinn, T.; Lovell, D.; Notredame, C.

10.1101/134536 — bioinformatics — Posted on 2017-05-05

1127 Simulating The Dynamics Of Targeted Capture Sequencing With CapSim

Cao, M. D.; Ganesamoorthy, D.; Coin, L. J. M.

10.1101/134510 — bioinformatics — Posted on 2017-05-05

1128 How To Normalize Metatranscriptomic Count Data For Differential Expression Analysis

Klingenberg, H.; Meinicke, P.

10.1101/134650 — bioinformatics — Posted on 2017-05-05

1129 Effect Of Initial Body Orientation On Escape Probability In Prey Fish Escaping From Predators

Kawabata, Y.; Kimura, H.

10.1101/134494 — animal behavior and cognition — Posted on 2017-05-05

1130 A persistent lack of International representation on editorial boards in biology

Espin, J.; Palmas-Perez, S.; Carrasco-Rueda, F.; Riemer, K.; Allen, P.; Berkebile, N.; Hecht, K.; Kastner-Wilcox, R. K.; Nunez-Regueiro, M.; Prince, C.; Rios-Marin, M. C.; Ross, E. P.; Singha, B.; Tyler, T.; Ungvari Martin, J.; Villegas, M.; Cataldo, T.; Bruna, E.

10.1101/131292 — scientific communication and education — Posted on 2017-05-05

1131 Attention selectively reshapes the geometry of distributed semantic representation

Nastase, S. A.; Connolly, A. C.; Oosterhof, N. N.; Halchenko, Y. O.; Guntupalli, J. S.; Visconti di Oleggio Castello, M.; Gors, J.; Gobbini, M. I.; Haxby, J. V.

10.1101/045252 — neuroscience — Posted on 2017-05-05

1132 mixOmics: an R package for ‘omics feature selection and multiple data integration

Rohart, F.; Gautier, B.; Singh, A.; Le Cao, K.-A.

10.1101/108597 — bioinformatics — Posted on 2017-05-05

1133 Quantitative RNAseq Meta Analysis Of Alternative Exon Usage In C. elegans

Tourasse, N. J.; Millet, J. R. M.; Dupuy, D.

10.1101/134718 — genomics — Posted on 2017-05-05

1134 Pairwise comparisons across species are problematic when analyzing functional genomic data

Dunn, C. W.; Zapata, F.; Munro, C.; Siebert, S.; Hejnol, A.

10.1101/107177 — genomics — Posted on 2017-05-05

1135 Preserving microsatellites? Conservation genetics of the giant Galapagos tortoise.

Loire, E.; Galtier, N.

10.1101/101980 — evolutionary biology — Posted on 2017-05-05

1136 Efficient repositioning of approved drugs as anti-HIV agents using Anti-HIV-Predictor

Dai, S.-X.; Chen, H.; Li, W.-X.; Guo, Y.-C.; Liu, J.-Q.; Zheng, J.-J.; Wang, Q.; Li, H.-J.; Chen, B.-W.; Gao, Y.-D.; Li, G.-H.; Zheng, Y.-T.; Huang, J.-F.

10.1101/087445 — bioinformatics — Posted on 2017-05-05

1137 Network Dynamics In The Healthy And Epileptic Developing Brain

Rosch, R. E.; Baldeweg, T.; Moeller, F.; Baier, G.

10.1101/133488 — neuroscience — Posted on 2017-05-05

1138 Genome-wide haplotype-based association analysis of major depressive disorder in Generation Scotland and UK Biobank

Howard, D. M.; Hall, L. S.; Hafferty, J. D.; Zeng, Y.; Adams, M. J.; Clarke, T.-K.; Porteous, D. J.; Nagy, R.; Hayward, C.; Smith, B. H.; Murray, A. D.; Ryan, N. M.; Evans, K. L.; Haley, C. S.; Deary, I. J.; Thomson, P. A.; McIntosh, A. M.

10.1101/068643 — genetics — Posted on 2017-05-05

1139 Naturally-segregating Variation at Ugt86Dd Contributes to Nicotine Resistance in Drosophila melanogaster

Highfill, C.; Tran, J.; Nguyen, S.; Moldenhauer, T.; Wang, X.; Macdonald, S. J.

10.1101/134429 — genetics — Posted on 2017-05-05

1140 taxMaps - Ultra-comprehensive and highly accurate taxonomic classification of short-read data in reasonable time

Corvelo, A.; Clarke, W. E.; Robine, N.; Zody, M. C.

10.1101/134023 — bioinformatics — Posted on 2017-05-05

1141 CircMarker: A Fast and Accurate Algorithm for Circular RNA Detection

Li, X.; Chu, C.; Pei, J.; Mandoiu, I.; Wu, Y.

10.1101/134411 — bioinformatics — Posted on 2017-05-05

1142 MotifMark: Finding Regulatory Motifs in DNA Sequences

Hassanzadeh, H. R.

10.1101/134296 — bioinformatics — Posted on 2017-05-05

1143 Juvenile Hormone, But Not Nutrition Or Social Cues, Affects Reproductive Maturation In Solitary Alkali Bees (Nomia melanderi)

Kapheim, K. M.; Johnson, M. M.

10.1101/134387 — physiology — Posted on 2017-05-04

1144 The Spectral Features Of EEG Responses To Transcranial Magnetic Stimulation Of The Primary Motor Cortex Depend On The Amplitude Of The Motor Evoked Potentials

Fecchio, M.; Pigorini, A.; Comanducci, A.; Sarasso, S.; Casarotto, S.; Premoli, I.; Mazza, A.; Derchi, C.-C.; Russo, S.; Resta, F.; Ferrarelli, F.; Mariotti, M.; Ziemann, U.; Massimini, M.; Rosanova, M.

10.1101/133769 — neuroscience — Posted on 2017-05-04

1145 The Evolution Of Covert Signaling

Smaldino, P. E.; Flamson, T. J.; McElreath, R.

10.1101/132407 — evolutionary biology — Posted on 2017-05-04

1146 Role of Membrane-tension Gated Ca Flux in Cell Mechanosensation

He, L.; Tao, J.; Si, F.; Wu, Y.; Wu, T.; Prasath, V.; Wirtz, D.; Sun, S. X.

10.1101/134395 — cell biology — Posted on 2017-05-04

1147 In-Silico Read Normalization Using Set Multi-Cover Optimization

Durai, D. A.; Schulz, M. H.

10.1101/133579 — bioinformatics — Posted on 2017-05-04

1148 A Systematic Atlas of Chaperome Deregulation Topologies Across the Human Cancer Landscape

Hadizadeh Esfahani, A.; Sverchkova, A.; Saez-Rodriguez, J.; Schuppert, A.; Brehme, M.

10.1101/122044 — systems biology — Posted on 2017-05-04

1149 Research Waste In ME/CFS

Lee, S.

10.1101/133926 — scientific communication and education — Posted on 2017-05-04

1150 Cross-Species Complementation Reveals Conserved Functions For EARLY FLOWERING 3 Between Monocots And Dicots

Huang, H.; Gehan, M.; Huss, S. E.; Alvarez, S.; Lizarraga, C.; Gruebbling, E. L.; Gierer, J.; Naldrett, M. J.; Bindbeutel, R.; Evans, B. S.; Mockler, T. C.; Nusinow, D. A.

10.1101/131185 — plant biology — Posted on 2017-05-04

1151 Untuned But Not Irrelevant: A Role For Untuned Neurons In Sensory Information Coding

Zylberberg, J.

10.1101/134379 — neuroscience — Posted on 2017-05-04

1152 Repetitive Transcranial Magnetic Stimulation Increases Phase-Amplitude Coupling

Nakatani, C.; Mullin, C.; Wagemans, J.; van Leeuwen, C.

10.1101/134239 — neuroscience — Posted on 2017-05-04

1153 Fronto-parietal Organization for Response Times in Inhibition of Return: The FORTIOR Model

Seidel Malkinson, T.; Bartolomeo, P.

10.1101/134163 — neuroscience — Posted on 2017-05-04

1154 Pseudoneglect in visual search: Behavioral evidence and simulated neural circuitry

Gigliotta, O.; Seidel Malkinson, T.; Miglino, O.; Bartolomeo, P.

10.1101/129171 — neuroscience — Posted on 2017-05-04

1155 A Cell Culture Platform For Cryptosporidium That Enables Long-Term Cultivation And New Tools For The Systematic Investigation Of Its Biology

Miller, C. N.; Josse, L.; Brown, I. R.; Blakeman, B.; Povey, J.; Yiangou, L.; Price, M.; Cinatl, J.; Xue, W.-F.; Michaelis, M.; Tsaousis, A.

10.1101/134270 — microbiology — Posted on 2017-05-04

1156 High-resolution single-cell sequencing of malaria parasites

Trevino, S. G.; Nkhoma, S. C.; Nair, S.; Daniel, B. J.; Moncada, K.; Khoswe, S.; Banda, R. L.; Nosten, F.; Cheeseman, I. H.

10.1101/130864 — genomics — Posted on 2017-05-04

1157 Coessentiality And Cofunctionality: A Network Approach To Learning Genetic Vulnerabilities From Cancer Cell Line Fitness Screens

Hart, T.; Koh, C.; Moffat, J.

10.1101/134346 — genomics — Posted on 2017-05-04

1158 Widespread Inter-Chromosomal Epistasis Regulates Glucose Homeostasis And Gene Expression

Chen, A.; Liu, Y.; Williams, S. M.; Morris, N.; Buchner, D. A.

10.1101/132175 — genetics — Posted on 2017-05-04

1159 Multilevel And Sex-Specific Selection On Competitive Traits In North American Red Squirrels

Fisher, D. N.; Boutin, S.; Dantzer, B.; Humphries, M. M.; Lane, J. E.; McAdam, A. G.

10.1101/104240 — evolutionary biology — Posted on 2017-05-04

1160 Sanctions, partner recognition, and variation in mutualism

Yoder, J. B.; Tiffin, P.

10.1101/049593 — evolutionary biology — Posted on 2017-05-04

1161 Evolution and manipulation of vector host choice

Gandon, S.

10.1101/110577 — evolutionary biology — Posted on 2017-05-04

1162 Demography And Mating System Shape The Genome-Wide Impact Of Purifying Selection In Arabis alpina

Laenen, B.; Tedder, A.; Nowak, M. D.; Torang, P.; Wunder, J.; Wotzel, S.; Steige, K.; Kourmpetis, Y.; Odong, T.; Drouzas, A. D.; Bink, M.; Agren, J.; Coupland, G.; Slotte, T.

10.1101/127209 — evolutionary biology — Posted on 2017-05-04

1163 Uncertainties In Tumor Allele Frequencies Limit Power To Infer Evolutionary Pressures

Noorbakhsh, J.; Chuang, J.

10.1101/134049 — cancer biology — Posted on 2017-05-04

1164 Real-Time Demultiplexing Nanopore Barcoded Sequencing Data With npBarcode

Nguyen, S. H.; Duarte, T. D. S.; Coin, L. J. M.; Cao, M. D.

10.1101/134155 — bioinformatics — Posted on 2017-05-04

1165 Automated Recommendation Of Metabolite Substructures From Mass Spectra Using Frequent Pattern Mining

Mrzic, A.; Meysman, P.; Bittremieux, W.; Laukens, K.

10.1101/134189 — bioinformatics — Posted on 2017-05-04

1166 Complex Dynamics From Simple Cognition: The Primary Ratchet Effect In Animal Culture

McElreath, M. B.; Boesch, C.; Kuehl, H.; McElreath, R.

10.1101/134247 — animal behavior and cognition — Posted on 2017-05-04

1167 Deep Neural Networks In Computational Neuroscience

Kietzmann, T. C.; McClure, P.; Kriegeskorte, N.

10.1101/133504 — neuroscience — Posted on 2017-05-04

1168 Microbial Metagenome Of Urinary Tract Infection

Moustafa, A.; Singh, H.; Li, W.; Moncera, K.; Torralba, M.; Yu, Y.; Manuel, O.; Biggs, W.; Venter, J. C.; Nelson, K.; Pieper, R.; Telenti, A.

10.1101/134320 — microbiology — Posted on 2017-05-04

1169 Convergent evolution of the army ant syndrome and congruence in big-data phylogenetics

Borowiec, M. L.

10.1101/134064 — evolutionary biology — Posted on 2017-05-04

1170 Extinction Times In Tumor Public Goods Games

Gerlee, P.; Altrock, P. M.

10.1101/134361 — cancer biology — Posted on 2017-05-04

1171 Deep Learning and Association Rule Mining for Predicting Drug Response in Cancer. A Personalised Medicine Approach.

10.1101/070490 — bioinformatics — Posted on 2017-05-04

1172 A tandem simulation framework for predicting mapping quality

Langmead, B.

10.1101/103952 — bioinformatics — Posted on 2017-05-04

1173 Deep Phenotyping: Deep Learning For Temporal Phenotype/Genotype Classification

Taghavi Namin, S.; Esmaeilzadeh, M.; Najafi, M.; Brown, T. B.; Borevitz, J. O.

10.1101/134205 — plant biology — Posted on 2017-05-04

1174 290 Metagenome-assembled Genomes from the Mediterranean Sea: a resource for marine microbiology

Tully, B. J.; Sachdeva, R.; Graham, E. D.; Heidelberg, J. F.

10.1101/069484 — microbiology — Posted on 2017-05-04

1175 A Specific Non-Bisphosphonate Inhibitor Of The Bifunctional Farnesyl/Geranylgeranyl Diphosphate Synthase In Malaria Parasites

Gisselberg, J. E.; Herrera, Z.; Orchard, L.; Llinas, M.; Yeh, E.

10.1101/134338 — microbiology — Posted on 2017-05-04

1176 Partitioning The Roles Of Insect And Microbial Enzymes In The Metabolism Of The Insecticide Imidacloprid In Drosophila melanogaster

Fusetto, R.; Denecke, S.; Perry, T.; O'Hair, R.; Batterham, P.

10.1101/134122 — genetics — Posted on 2017-05-04

1177 Aubergine And piRNAs Repress The Proto-Oncogene Cbl For Germline Stem Cell Self-Renewal

Rojas-Rios, P.; Chartier, A.; Simonelig, M.

10.1101/134304 — developmental biology — Posted on 2017-05-04

1178 Smile at Me! Dogs Activate The Temporal Cortex Towards Smiling Human Faces

Cuaya, L. V.; Hernandez-Perez, R.; Concha, L.

10.1101/134080 — animal behavior and cognition — Posted on 2017-05-04

1179 Smc6 And Top1 Prevent Aberrant Recombination At The Silent Mating-Type Locus HMR In Budding Yeast

Tran, M.; Sjogren, C.; Kegel, A.

10.1101/134171 — molecular biology — Posted on 2017-05-04

1180 A Survey of Genome Editing Activity for 16 Cpf1 orthologs

Zetsche, B.; Strecker, J.; Abudayyeh, O. O.; Gootenberg, J. S.; Scott, D. A.; Zhang, F.

10.1101/134015 — molecular biology — Posted on 2017-05-04

1181 The N-terminal domain of ALS-linked TDP-43 assembles without misfolding

Tsoi, P. S.; Choi, K. J.; Leonard, P. G.; Sizovs, A.; Moosa, M. M.; MacKenzie, K. R.; Ferreon, J. C.; Ferreon, A. C. M.

10.1101/134072 — biophysics — Posted on 2017-05-04

1182 Impact Of Sequencing Depth And Read Length On Single Cell RNA Sequencing Data: Lessons From T Cells

Rizzetto, S.; Eltahla, A. A.; Lin, P.; Bull, R.; Lloyd, A.; Ho, J. W. K.; Venturi, V.; Luciani, F.

10.1101/134130 — bioinformatics — Posted on 2017-05-04

1183 Cells Interpret Temporal Information From TGF-β Through A Nested Relay Mechanism

Zhang, J.; Tian, X.-J.; Chen, Y.-J.; Wang, W.; Watkins, S.; Xing, J.

10.1101/134106 — systems biology — Posted on 2017-05-04

1184 Identification and dynamics of the DHHC16-DHHC6 palmitoylation cascade

Abrami, L.; Dallavilla, T.; Sandoz, P.; Demir, M.; Kunz, B.; Savoglidis, G.; Hatzimanikatis, V.; van der Goot, F. G.

10.1101/134007 — cell biology — Posted on 2017-05-03

1185 A Defense Of Model Averaging

Walker, J. A.

10.1101/133785 — ecology — Posted on 2017-05-03

1186 Spike Discharge Prediction Based On Neuro-Fuzzy System

Zarei, M.

10.1101/133967 — bioinformatics — Posted on 2017-05-03

1187 Initial-State-Dependent, Robust, Transient Neural Dynamics Encode Conscious Visual Perception

Baria, A. T.; Maniscalco, B.; He, B. J.

10.1101/133983 — neuroscience — Posted on 2017-05-03

1188 SArKS: Discovering Gene Expression Regulatory Motifs And Domains By Suffix Array Kernel Smoothing

Wylie, D. C.; Hofmann, H. A.; Zemelman, B. V.

10.1101/133934 — bioinformatics — Posted on 2017-05-03

1189 Gene2Function: An Integrated Online Resource For Gene Function Discovery

Hu, Y.; Comjean, A.; Mohr, S.; The FlyBase Consortium, ; Perrimon, N.

10.1101/133975 — bioinformatics — Posted on 2017-05-03

1190 Regulation Of Iron Homeostasis By SPAK-Dependent Modulation Of FBXL5 Stability

Powers, D. N.; Vashisht, A. A.; Shenouda, M.; Yao, C.; Wohlschlegel, J. A.

10.1101/133777 — biochemistry — Posted on 2017-05-03

1191 On reciprocal causation in the evolutionary process

Svensson, E. I.

10.1101/122457 — evolutionary biology — Posted on 2017-05-03

1192 The demographic history and mutational load of African hunter-gatherers and farmers

Lopez, M.; Kousathanas, A.; Quach, H.; Harmant, C.; Mouguiama-Daouda, P.; Hombert, J.-M.; Froment, A.; Perry, G. H.; Barreiro, L. B.; Verdu, P.; Patin, E.; Quintana-Murci, L.

10.1101/131219 — evolutionary biology — Posted on 2017-05-03

1193 Dense Bicoid Hubs Accentuate Binding along the Morphogen Gradient

Mir, M.; Reimer, A.; Haines, J. E.; Li, X.-Y.; Stadler, M.; Garcia, H.; Eisen, M. B.; Darzacq, X.

10.1101/133124 — developmental biology — Posted on 2017-05-03

1194 Concentration Dependent Chromatin States Induced by the Bicoid Morphogen Gradient

Hannon, C. E.; Blythe, S. A.; Wieschaus, E. F.

10.1101/133348 — developmental biology — Posted on 2017-05-03

1195 Emerging Electrical Properties of Graphene incorporated Photosynthetic Biofilms

Ray, S.; Sen, S.; Das, A.; Bose, A.; Bhattacharyya, A.; Das, A.; Chattopadhyay, S.; Patra, H. K.; Singha, S.; Singha, A.; Dasgupta, A. K.

10.1101/132225 — biophysics — Posted on 2017-05-03

1196 Integration And Differentiation Of Neural Information Dissociate Between Conscious Percepts

Canales-Johnson, A.; Billig, A.; Olivares, F.; Gonzalez, A.; Garcia, M. d. C.; Silva, W.; Ciraolo, C.; Vaucheret, E.; Mikulan, E.; Ibanez, A.; Noreika, V.; Chennu, S.; Bekinschtein, T.

10.1101/133801 — neuroscience — Posted on 2017-05-03

1197 The contribution of area MT to visual motion perception depends on training

Liu, L.; Pack, C.

10.1101/094128 — neuroscience — Posted on 2017-05-03

1198 Pattern separation of spiketrains by individual granule cells of the dentate gyrus

Madar, A. D.; Ewell, L. A.; Jones, M. V.

10.1101/107706 — neuroscience — Posted on 2017-05-03

1199 Predicting Morphological Disparities In Sea Urchin Skeleton Growth And Form

Abou Chakra, M.; Lovric, M.; Stone, J. R.

10.1101/133900 — evolutionary biology — Posted on 2017-05-03

1200 Polymorphisms in the vitamin D receptor gene are associated with reduced rate of sputum culture conversion in multidrug-resistant tuberculosis patients in South Africa

Magee, M. J.; Sun, Y. V.; Brust, J. C.; Shah, N. S.; Ning, Y.; Allana, S.; Campbell, A.; Hui, Q.; Mlisana, K.; Moodley, P.; Gandhi, N. R.

10.1101/132852 — epidemiology — Posted on 2017-05-03

1201 Diagnostic, Infection Timing and Incidence Surveillance Applications of High Dynamic Range Chemiluminescent HIV Immuno-Assay Platforms

Grebe, E.; Welte, A.; Hall, J.; Keating, S. M.; Facente, S. N.; Marson, K.; Martin, J. N.; Little, S. J.; Price, M. A.; Kallas, E. G.; Busch, M. P.; Pilcher, C. D.; Murphy, G.; CEPHIA,

10.1101/132332 — epidemiology — Posted on 2017-05-03

1202 Multiscale Modeling To Explore Ebola Vaccination Strategies

Nguyen, V. K.; Mikolajczyk, R.; Hernandez-Vargas, E. A.

10.1101/133421 — epidemiology — Posted on 2017-05-03

1203 Spatial distribution of extensively drug-resistant tuberculosis (XDR-TB) patients in KwaZulu-Natal, South Africa

Kapwata, T.; Morris, N.; Gandhi, N.; Campbell, A.; Mthiyane, T.; Mpangase, P.; Nelson, K.; Allana, S.; Brust, J.; Moodley, P.; Mlisana, K.; Shah, S.

10.1101/132886 — epidemiology — Posted on 2017-05-03

1204 An Efficient Platform For Astrocyte Differentiation From Human Induced Pluripotent Stem Cells

TCW, J.; Wang, M.; Pimenova, A.; Bowles, K.; Hartley, B.; Lacin, E.; Machlovi, S.; Abdelaal, R.; Karch, C.; Phatnani, H.; Slesinger, P.; Zhang, B.; Goate, A.; Brennand, K.

10.1101/133496 — neuroscience — Posted on 2017-05-03

1205 The Spectral Features Of EEG Responses To Transcranial Magnetic Stimulation Of The Primary Motor Cortex Depend On The Amplitude Of The Motor Evoked Potentials

10.1101/133769 — neuroscience — Posted on 2017-05-03

1206 Frequency-Resolved Correlates Of Visual Object Recognition In Human Brain Revealed By Deep Convolutional Neural Networks

Kuzovkin, I.; Vicente, R.; Petton, M.; Lachaux, J.-P.; Baciu, M.; Kahane, P.; Rheims, S.; Vidal, J. R.; Aru, J.

10.1101/133694 — neuroscience — Posted on 2017-05-03

1207 The Envelope Proteome Changes Driven By RamA Overproduction in Klebsiella pneumoniae That Enhance Acquired β-Lactam Resistance

Jimenez-Castellanos, J.-C.; Wan Nur Ismah, W. A. K.; Takebayashi, Y.; Findlay, J.; Schneiders, T.; Heesom, K. J.; Avison, M. B.

10.1101/133918 — microbiology — Posted on 2017-05-03

1208 Single Molecule Sequencing Of M13 Virus Genome Without Amplification

Zhao, L.; Deng, L.; Li, G.; Jin, H.; Cai, J.; Shang, H.; Li, Y.; Wu, H.; Xu, W.; Zeng, L.; Zhang, R.; Zhao, H.; Wu, P.; Zhou, Z.; Zheng, J.; Ezanno, P.; Yan, Q.; Deem, M.; He, J.

10.1101/133843 — genomics — Posted on 2017-05-03

1209 COPI Mediates Recycling Of An Exocytic SNARE From Endosomes By Recognition Of A Ubiquitin Sorting Signal

Xu, P.; Hankins, H.; Macdonald, C.; Erlinger, S. J.; Frazier, M.; Diab, N. S.; Piper, R. C.; Jackson, L. P.; MacGurn, J. A.; Graham, T. R.

10.1101/133546 — cell biology — Posted on 2017-05-03

1210 Stimulus Dependent Diversity And Stereotypy In The Output Of An Olfactory Functional Unit

Arneodo, E. M.; Penikis, K. B.; Rabinowitz, N.; Cichy, A.; Zhang, J.; Bozza, T.; Rinberg, D.

10.1101/133561 — neuroscience — Posted on 2017-05-03

1211 The Past Sure Is Tense: On Interpreting Phylogenetic Divergence Time Estimates

Brown, J. W.; Smith, S. A.

10.1101/113720 — evolutionary biology — Posted on 2017-05-03

1212 ADAM17 Is The Main Sheddase For The Generation Of Human Triggering Receptor Expressed In Myeloid Cells (hTREM2) Ectodomain And Cleaves TREM2 After Histidine 157

Feuerbach, D.; Schindler, P.; Barske, C.; Joller, S.; Beng-Louka, E.; Worringer, K. A.; Kommineni, S.; Kaykas, A.; Ho, D. J.; Ye, C.; Welzenbach, K.; Elain, G.; Klein, L.; Brzak, I.; Mir, A. K.; Faraday, C. J.; Aichholz, R.; Popp, S.; George, N.; Hsieh, C. L.; Nakamura, M. C.; Neumann, U.

10.1101/133751 — cell biology — Posted on 2017-05-03

1213 UPS-indel: A Universal Positioning System For Indels

Hasan, M. S.; Wu, X.; Watson, L. T.; Li, Z.; Zhang, L.

10.1101/133553 — bioinformatics — Posted on 2017-05-03

1214 MmpL3 is the flippase for mycolic acids in mycobacteria

Xu, Z.; Meshcheryakov, V. A.; Poce, G.; Chng, S. S.

10.1101/099440 — biochemistry — Posted on 2017-05-03

1215 The Floral Homeotic Protein SEPALLATA3 Recognizes Target DNA Sequences By Shape Readout Involving A Conserved Arginine Residue In The MADS-Domain

Gusewski, S.; Melzer, R.; Ruempler, F.; Gafert, C.; Theissen, G.

10.1101/133678 — plant biology — Posted on 2017-05-03

1216 Fronto-Parietal Interactions With Task-Evoked Functional Connectivity During Cognitive Control

Hwang, K.; Shine, J. M.; D'Esposito, M.

10.1101/133611 — neuroscience — Posted on 2017-05-03

1217 The Superior Colliculus And The Steering Of Saccades Toward A Moving Visual Target

Goffart, L.; Cecala, A. L.; Gandhi, N.

10.1101/133736 — neuroscience — Posted on 2017-05-03

1218 Anti-proliferative therapy for HIV cure: a compound interest approach

Reeves, D.; Duke, E.; Hughes, S.; Prlic, M.; Hladik, F.; Schiffer, J.

10.1101/063305 — immunology — Posted on 2017-05-03

1219 Testing an alternative explanation for relatively greater base-sharing between Neanderthals and non-African humans

Amos, W.

10.1101/133306 — genomics — Posted on 2017-05-03

1220 Precision Medicine Screening Using Whole Genome Sequencing And Advanced Imaging To Identify Disease Risk In Adults

Perkins, B. A.; Caskey, C. T.; Brar, P.; Dec, E.; Karow, D.; Kahn, A.; Hou, C.; Shah, N.; Boeldt, D.; Coughlin, E.; Hands, G.; Lavrenko, V.; Yu, J.; Procko, A.; Appis, J.; Dale, A. M.; Guo, L.; Jonsson, T. J.; Wittmann, B. M.; Bartha, I.; Ramakrishnan, S.; Bernal, A.; Brewer, J.; Brewerton, S.; Biggs, W. H.; Turpaz, Y.; Telenti, A.; Venter, J. C.

10.1101/133538 — genomics — Posted on 2017-05-03

1221 Is It Time To Retire Wolbachia Multilocus Sequence Typing (MLST)?

Bleidorn, C.; Gerth, M.

10.1101/133710 — evolutionary biology — Posted on 2017-05-03

1222 Are Global Hotspots Of Endemic Richness Shaped By Plate Tectonics?

Pellissier, L.; Heine, C.; Albouy, C.

10.1101/131128 — evolutionary biology — Posted on 2017-05-03

1223 ATR Is Required To Complete Meiotic Recombination In Mice

Pacheco, S.; Maldonado-Linares, A.; Marcet-Ortega, M.; Rojas, C.; Martinez-Marchal, A.; Fuentes-Lazaro, J.; Lange, J.; Jasin, M.; Keeney, S.; Fernandez-Capetillo, O.; Garcia-Caldes, M.; Roig, I.

10.1101/133744 — cell biology — Posted on 2017-05-03

1224 A Functional Drug Re-Purposing Screening Identifies Carfilzomib As A Drug Preventing 17β-Estradiol: ERα Signaling And Cell Proliferation In Breast Cancer Cells

Busonero, C.; Leone, S.; Klemm, C.; Acconcia, F.

10.1101/133256 — cancer biology — Posted on 2017-05-03

1225 Self-Organisation And Positioning Of Bacterial Protein Clusters

Murray, S. M.; Sourjik, V.

10.1101/133637 — biophysics — Posted on 2017-05-03

1226 DNA Methylation Landscape Reflects the Spatial Organization of Chromatin in Different Cells

Zhang, L.; Xie, W. J.; Liu, S.; Meng, L.; Gu, C.; Gao, Y. Q.

10.1101/080531 — biophysics — Posted on 2017-05-03

1227 In-Silico Read Normalization Using Set Multi-Cover Optimization

Durai, D. A.; Schulz, M. H.

10.1101/133579 — bioinformatics — Posted on 2017-05-03

1228 Identification And Prioritisation Of Variants In The Short Open-Reading Frame Regions Of The Human Genome

Jackson, F.; Wayland, M. T.; Prabakaran, S.

10.1101/133645 — genetics — Posted on 2017-05-03

1229 Experimental Evidence That Thermal Selection Shapes Mitochondrial Genome Evolution

Lajbner, Z.; Pnini, R.; Camus, M. F.; Miller, J.; Dowling, D. K.

10.1101/133389 — evolutionary biology — Posted on 2017-05-03

1230 Nanoscale Dynamics of Centromere Nucleosomes and the Critical Roles of CENP-A

Stumme-Diers, M. P.; Banerjee, S.; Hashemi, M.; Sun, Z.; Lyubchenko, Y. L.

10.1101/133520 — biophysics — Posted on 2017-05-03

1231 A safer, urea-based in situ hybridization method improves detection of gene expression in diverse animal species

Sinigaglia, C.; Thiel, D.; Hejnol, A.; Houliston, E.; Leclere, L.

10.1101/133470 — developmental biology — Posted on 2017-05-03

1232 Relic DNA contributes minimally to estimates of microbial diversity

Lennon, J. T.; Placella, S. A.; Muscarella, M. E.

10.1101/131284 — microbiology — Posted on 2017-05-02

1233 Network Dynamics In The Healthy And Epileptic Developing Brain

Rosch, R. E.; Baldeweg, T.; Moeller, F.; Baier, G.

10.1101/133488 — neuroscience — Posted on 2017-05-02

1234 Exon-Based Phylogenomics Strengthens The Phylogeny Of Neotropical Cichlids And Identifies Remaining Conflicting Clades (Cichlomorphae: Cichlidae: Cichlinae)

Ilves, K. L.; Torti, D.; Lopez-Fernandez, H.

10.1101/133512 — evolutionary biology — Posted on 2017-05-02

1235 BugBase Predicts Organism Level Microbiome Phenotypes

Ward, T.; Larson, J.; Meulemans, J.; Hillmann, B.; Lynch, J.; Sidiropoulos, D.; Spear, J.; Caporaso, G.; Blekhman, R.; Knight, R.; Fink, R.; Knights, D.

10.1101/133462 — bioinformatics — Posted on 2017-05-02

1236 Insight and Inference for DVARS

Afyouni, S.; Nichols, T. E.

10.1101/125021 — neuroscience — Posted on 2017-05-02

1237 Deep Sequencing: Intra-Terrestrial Metagenomics Illustrates The Potential Of Off-Grid Nanopore DNA Sequencing

Edwards, A.; Soares, A.; Rassner, S.; Green, P.; Felix, J.; Mitchell, A.

10.1101/133413 — microbiology — Posted on 2017-05-02

1238 Carrion Fly-Derived DNA Metabarcoding Is An Effective Tool For Mammal Surveys: Evidence From A Known Tropical Mammal Community

Rodgers, T. W.; Xu, C.; Giacalone, J.; Kapheim, K.; Saltonstall, K.; Vargas, M.; Yu, D.; Somervuo, P.; McMillan, W. O.; Jansen, P.

10.1101/133405 — zoology — Posted on 2017-05-02

1239 A Universal Metric For Evaluating, Optimising And Benchmarking The Performance Of A Research Technology Platform (RTP)

Petrunkina, A. M.; Filby, A.

10.1101/133207 — scientific communication and education — Posted on 2017-05-02

1240 Focal Versus Distributed Temporal Cortex Activity For Speech Sound Category Assignment

Bouton, S.; Chambon, V.; Tyrand, R.; Guggisberg, A. G.; Seeck, M.; Karkar, S.; van de Ville, D.; Giraud, A.-L.

10.1101/133272 — neuroscience — Posted on 2017-05-02

1241 A unified internal model theory to resolve the paradox of active versus passive self-motion sensation

Laurens, J.; Angelaki, D. E.

10.1101/132936 — neuroscience — Posted on 2017-05-02

1242 Recurrent Convolutional Neural Networks: A Better Model Of Biological Object Recognition Under Occlusion

Spoerer, C.; McClure, P.; Kriegeskorte, N.

10.1101/133330 — neuroscience — Posted on 2017-05-02

1243 Population Temporal Structure Supplements The Rate Code During Sensorimotor Transformations

Jagadisan, U. K.; Gandhi, N. J.

10.1101/132514 — neuroscience — Posted on 2017-05-02

1244 Extracting Saccades From Eye Movements Triggered By Reflex Blinks

Jagadisan, U. K.; Gandhi, N. J.

10.1101/132605 — neuroscience — Posted on 2017-05-02

1245 Advanced Lesion Symptom Mapping Analyses And Implementation As BCBtoolkit

Foulon, C.; Cerliani, L.; Kinkingnehun, S.; Levy, R.; Rosso, C.; Urbanski, M.; Volle, E.; Thiebaut de Schotten, M.

10.1101/133314 — neuroscience — Posted on 2017-05-02

1246 Hebbian Learning in a Random Network Captures Selectivity Properties of Prefrontal Cortex

Lindsay, G. W.; Rigotti, M.; Warden, M. R.; Miller, E. K.; Fusi, S.

10.1101/133025 — neuroscience — Posted on 2017-05-02

1247 A Supervised Statistical Learning Approach For Accurate Legionella pneumophila Source Attribution During Outbreaks

Buultjens, A.; Chua, K.; Baines, S.; Kwong, J.; Gao, W.; Cutcher, Z.; Adcock, S.; Ballard, S.; Tomita, T.; Subasinghe, N.; Carter, G.; Pidot, S.; Franklin, L.; Seemann, T.; Goncalves Da Silva, A.; Howden, B.; Stinear, T.

10.1101/133033 — microbiology — Posted on 2017-05-02

1248 Redox-Dependent Condensation Of Mycobacterial Genome By WhiB4

Chawla, M.; Mehta, M.; Parikh, P.; Mishra, S.; Shukla, P.; Baloni, P.; Vij, M.; Verma, H. N.; Ganguli, M.; Chandra, N.; Singh, A.

10.1101/133181 — microbiology — Posted on 2017-05-02

1249 Concentration Dependent Chromatin States Induced by the Bicoid Morphogen Gradient

Hannon, C. E.; Blythe, S. A.; Wieschaus, E. F.

10.1101/133348 — developmental biology — Posted on 2017-05-02

1250 Statistical Mechanics Of Phase Space Partitioning In Large-Scale Spiking Neuron Circuits

Puelma Touzel, M.; Wolf, F.

10.1101/132993 — biophysics — Posted on 2017-05-02

1251 LEAP: A Generalization Of The Landau-Vishkin Algorithm With Custom Gap Paneities

Xin, H.; Kim, J.; Nahar, S.; Kingsford, C.; Alkan, C.; Mutlu, O.

10.1101/133157 — bioinformatics — Posted on 2017-05-02

1252 Gene annotation bias impedes biomedical research

Haynes, W.; Tomczak, A.; Khatri, P.

10.1101/133108 — bioinformatics — Posted on 2017-05-02

1253 Coal-Miner: A Coalescent-Based Method For GWA Studies Of Quantitative Traits With Complex Evolutionary Origins

Hejase, H. A.; Vande Pol, N.; Bonito, G. M.; Edger, P. P.; Liu, K. J.

10.1101/132951 — bioinformatics — Posted on 2017-05-02

1254 Stable Membrane Topologies Of Small Dual-Topology Membrane Proteins

Fluman, N.; Tobiasson, V.; von Heijne, G.

10.1101/133298 — biochemistry — Posted on 2017-05-02

1255 Perceived closeness and autistic traits modulate interpersonal vocal communication

Spinola, O.; Sumathi, T. A.; Singh, N. C.; Chakrabarti, B.

10.1101/133066 — animal behavior and cognition — Posted on 2017-05-02

1256 Glioma Grade Map: A Machine-Learning Based Imaging Biomarker For Tumor Characterization

Jakab, A.; Molnar, P. P.; Emri, M.; Berenyi, E.

10.1101/133249 — pathology — Posted on 2017-05-02

1257 Reverse Engineering of Trascriptional Networks Uncovers Candidate Master Regulators Governing Neuropathology of Schizophrenia

Doostparast Torshizi, A.; Armoskus, C.; Zhang, S.; Moy, W.; Evgrafov, O. V.; Duan, J.; Knowles, J. A.; Wang, K.

10.1101/133363 — neuroscience — Posted on 2017-05-02

1258 NMDA receptor blockade causes selective prefrontal disinhibition in a roving auditory oddball paradigm

Rosch, R. E.; Auksztulewicz, R.; Leung, P. D.; Friston, K. J.; Baldeweg, T.

10.1101/133371 — neuroscience — Posted on 2017-05-02

1259 Mitochondria Are Physiologically Maintained At Close To 50 C

Chretien, D.; Benit, P.; Ha, H.-H.; Keipert, S.; El-Khoury, R.; Chang, Y.-T.; Jastroch, M.; Jacobs, H.; Rustin, P.; Rak, M.

10.1101/133223 — cell biology — Posted on 2017-05-02

1260 Negative Correlation Between The Expression Of tlr4 And grp78 Is Characteristic Of Sepsis Onset And Progression

Stan, R.; Bonin, C.; Porto, R.; Soriano, F.; Camargo, M. M. d.

10.1101/133264 — molecular biology — Posted on 2017-05-02

1261 REPARATION: Ribosome Profiling Assisted (Re-)Annotation of Bacterial genomes.

Ndah, E.; Jonckheere, V.; Giess, A.; Valen, E.; Menschaert, G.; Van Damme, P.

10.1101/113530 — microbiology — Posted on 2017-05-02

1262 Red Blood Cell Distribution Width: genetic evidence for aging pathways in 116,666 volunteers

Pilling, L. C.; Atkins, J. L.; Duff, M. O.; Beaumont, R. N.; Jones, S. E.; Tyrrell, J.; Kuo, C.-L.; Ruth, K. S.; Tuke, M. A.; Yaghootkar, H.; Wood, A. R.; Murray, A.; Weedon, M. N.; Harries, L. W.; Kuchel, G. A.; Ferrucci, L.; Frayling, T. M.; Melzer, D.

10.1101/128330 — genomics — Posted on 2017-05-02

1263 Network Reconstruction And Systems Analysis Of Plant Cell Wall Deconstruction By Neurospora crassa

Samal, A.; Craig, J. P.; Coradetti, S. T.; Benz, J. P.; Eddy, J. A.; Price, N. D.; Glass, N. L.

10.1101/133165 — systems biology — Posted on 2017-05-02

1264 The Landscape Of Human Mutually Exclusive Splicing

Hatje, K.; Vidal, R.; Rahman, R.-U.; Simm, D.; Hammesfahr, B.; Shomroni, O.; Kollmar, M.; Bonn, S.

10.1101/133215 — bioinformatics — Posted on 2017-05-02

1265 Splatter: Simulation Of Single-Cell RNA Sequencing Data

Zappia, L.; Phipson, B.; Oshlack, A.

10.1101/133173 — bioinformatics — Posted on 2017-05-02

1266 Bistability In Fluorescence From A Purple Non-Sulfur Bacteria

Bose, A.; Raja, S. O.; Ray, S.; Dasgupta, A. K.

10.1101/132498 — systems biology — Posted on 2017-05-02

1267 Control of Lipid Domain Organization by a Biomimetic Contractile Actomyosin Cortex

Vogel, S. K.; Greiss, F.; Khmelinskaia, A.; Schwille, P.

10.1101/096248 — synthetic biology — Posted on 2017-05-02

1268 How Does Mixed Reality Affect Quiet Stance?

Kong, G.; Wei, K.; Kording, K. P.

10.1101/129239 — physiology — Posted on 2017-05-02

1269 EM and component-wise boosting for Hidden Markov Models: a machine-learning approach to capture-recapture

Rankin, R. W.

10.1101/052266 — ecology — Posted on 2017-05-02

1270 FORKS: Finding Orderings Robustly using K-means and Steiner trees

Sharma, M.; Li, H.; Sengupta, D.; Prabhakar, S.; Jayadeva, J.

10.1101/132811 — bioinformatics — Posted on 2017-05-02

1271 Non-Parametric Estimation Of Population Size Changes From The Site Frequency Spectrum

Waltoft, B. L.; Hobolth, A.

10.1101/125351 — bioinformatics — Posted on 2017-05-02

1272 Identifying differential isoform abundance with RATs: a universal tool and a warning

Froussios, K.; Mourao, K.; Simpson, G. G.; Barton, G. J.; Schurch, N. J.

10.1101/132761 — bioinformatics — Posted on 2017-05-02

1273 Metagenomic binning through low density hashing

Luo, Y.; Yu, Y. W.; Zeng, J.; Berger, B.; Peng, J.

10.1101/133116 — bioinformatics — Posted on 2017-05-02

1274 PaperBLAST: Text-mining papers for information about homologs

Price, M. N.; Arkin, A. P.

10.1101/133041 — bioinformatics — Posted on 2017-05-02

1275 Morphine selectively promotes glutamate release from glutamatergic terminals of projection neurons from medial prefrontal cortex to dopamine neurons of ventral tegmental area

Zheng, P.; Yang, L.; Chen, M.

10.1101/133090 — neuroscience — Posted on 2017-05-01

1276 Cross-Species Complementation Reveals Conserved Functions For EARLY FLOWERING 3 Between Monocots And Dicots

Huang, H.; Gehan, M.; Huss, S. E.; Alvarez, S.; Lizarraga, C.; Gruebbling, E. L.; Gierer, J.; Naldrett, M. J.; Bindbeutel, R.; Evans, B. S.; Mockler, T. C.; Nusinow, D. A.

10.1101/131185 — plant biology — Posted on 2017-05-01

1277 The effector TepP mediates the recruitment and activation of Phosphoinositide 3 Kinase on early Chlamydia trachomatis vacuoles

Carpenter, V.; Chen, Y.-S.; Dolat, L.; Valdivia, R.

10.1101/132282 — microbiology — Posted on 2017-05-01

1278 Multidisciplinary field research in Kabwe, Zambia, towards better understanding of lead contamination of the city - A short report from a field survey

Uchida, Y.; Banda, K.; Nyambe, I.; Hamamoto, T.; Yoshii, Y.; Munthali, K.; Mwansa, M.; Mukuka, M.; Mutale, M.; Yabe, J.; Toyomaki, H.; Beyene, Y. Y.; Nakayama, S. M. M.; Naruse, N.; Ishizuka, M.; Takahashi, Y.

10.1101/096164 — ecology — Posted on 2017-05-01

1279 Dense Bicoid Hubs Accentuate Binding along the Morphogen Gradient

Mir, M.; Reimer, A.; Haines, J. E.; Li, X.-Y.; Stadler, M.; Garcia, H.; Eisen, M. E.; Darzacq, X.

10.1101/133124 — developmental biology — Posted on 2017-05-01

1280 Distinct features of multivesicular body-lysosome fusion revealed by a new cell-free content-mixing assay

Karim, M. A.; Mattie, S.; Brett, C.

10.1101/133074 — cell biology — Posted on 2017-05-01

1281 Cell-cycle dependent organization and dynamics of RNA Polymerase I in live human cells

Conway, W.; Cho, W.-K.; Jayanth, N.; Mullen, S.; Cisse, I. I.

10.1101/133082 — biophysics — Posted on 2017-05-01

1282 BasecRAWller: Streaming Nanopore Basecalling Directly from Raw Signal

Stoiber, M.; Brown, J.

10.1101/133058 — bioinformatics — Posted on 2017-05-01

1283 The erratic and contingent progression of research on territoriality: a case study.

Kamath, A.; Losos, J.

10.1101/107664 — animal behavior and cognition — Posted on 2017-05-01

1284 A Migratory Divide In The Painted Bunting (Passerina ciris)

Battey, C. J.; Linck, E. B.; Epperly, K. L.; French, C.; Slager, D. L.; Sykes, P. W.; Klicka, J.

10.1101/132910 — zoology — Posted on 2017-05-01

1285 High-Throughput Profiling Identifies Resource Use Efficient And Abiotic Stress Tolerant Sorghum Varieties

Veley, K. M.; Berry, J. C.; Fentress, S. J.; Schachtman, D. P.; Baxter, I.; Bart, R.

10.1101/132787 — plant biology — Posted on 2017-05-01

1286 In Utero Diffusion Tensor Imaging Of The Fetal Brain: A Reproducibility Study

Jakab, A.; Tuura, R.; Kellenberger, C.; Scheer, I.

10.1101/132704 — neuroscience — Posted on 2017-05-01

1287 Distance Is Not Everything In Imaging Genomics Of Functional Networks: Reply To A Commentary On Correlated Gene Expression Supports Synchronous Activity In Brain Networks

Richiardi, J.; Altmann, A.; Greicius, M.

10.1101/132746 — neuroscience — Posted on 2017-05-01

1288 Policies or Knowledge: Priors differ between perceptual and sensorimotor tasks

Chambers, C.; Fernandes, H.; Kording, K.

10.1101/132829 — neuroscience — Posted on 2017-05-01

1289 Long-Lasting Contribution Of Dopamine In The Nucleus Accumbens Core, But Not Dorsal Lateral Striatum, To Sign-Tracking

Fraser, K. M.; Janak, P. H.

10.1101/132977 — neuroscience — Posted on 2017-05-01

1290 Platelet phosphorylated TDP-43: An exploratory study for a peripheral surrogate biomarker development for Alzheimer’s disease

Wilhite, R.; Sage, J. M.; Bouzid, A.; Primavera, T.; Agbas, A.

10.1101/132837 — neuroscience — Posted on 2017-05-01

1291 Population Genomics Of Cryptococcus neoformans var. grubii Reveals New Biogeographic Relationships And Finely Maps Hybridization

Rhodes, J.; Desjardins, C. A.; Sykes, S. M.; Beale, M. A.; Vanhove, M.; Sakthikumar, S.; Chen, Y.; Gujja, S.; Saif, S.; Chowdhary, A.; Lawson, D. J.; Ponzio, V.; Colombo, A.; Meyer, W.; Engelthaler, D.; Hagen, F.; Illnait-Zaragozi, M. T.; Alanio, A.; Vreulink, J.-M.; Heitman, J.; Perfect, J. R.; Litvintseva, A.; Bicanic, T.; Harrison, T. S.; Fisher, M. C.; Cuomo, C. A.

10.1101/132894 — genomics — Posted on 2017-05-01

1292 Contribution Of Genetic Variation And Developmental Stage To Methylome Dynamics In Myeloid Differentiation

Chen, X.; Fan, Y.; Cheng, J.; Xu, B.; Wang, Y.-D.; Yergeau, D.; Easton, J.; Downing, J. R.; Zhang, J.

10.1101/132985 — genomics — Posted on 2017-05-01

1293 Disparity, Diversity, And Duplications In The Caryophyllales

Smith, S.; Parins-Fukuchi, C.; Yang, Y.; Moore, M.; Brockington, S. F.; Bruenn, R.; Drummond, C. P.; Brown, J. W.; Walker, J. F.; Last, N.; Douglas, N. A.

10.1101/132878 — evolutionary biology — Posted on 2017-05-01

1294 piClusterBusteR: Software For Automated Classification And Characterization Of piRNA Cluster Loci

Schreiner, P. A.; Atkinson, P.

10.1101/133009 — bioinformatics — Posted on 2017-05-01

1295 AASRA: An Anchor Alignment-Based Small RNA Annotation Pipeline

Tang, C.; Xie, Y.; Yan, W.

10.1101/132928 — bioinformatics — Posted on 2017-05-01

1296 FastNet: Fast and accurate inference of phylogenetic networks using large-scale genomic sequence data

Hejase, H.; VandePol, N.; Bonito, G. A.; Liu, K. J.

10.1101/132795 — bioinformatics — Posted on 2017-05-01

1297 Perceptual Expectations Do Not Modulate Image Repetition Effects As Measured By Event-Related Potentials

Feuerriegel, D.; Churches, O.; Coussens, S.; Keage, H. A. D.

10.1101/132621 — neuroscience — Posted on 2017-05-01

1298 Identification Of Cellular-Activity Dynamics Across Large Tissue Volumes In The Mammalian Brain

Grosenick, L. M.; Broxton, M.; Kim, C. K.; Liston, C.; Poole, B.; Yang, S.; Andalman, A. S.; Scharff, E.; Cohen, N.; Yizhar, O.; Ramakrishnan, C.; Ganguli, S.; Suppes, P.; Levoy, M.; Deisseroth, K.

10.1101/132688 — neuroscience — Posted on 2017-05-01

1299 High-Risk Human Papillomavirus E7 Alters Host DNA Methylome And Represses HLA-E Expression In Human Keratinocytes

Cicchini, L.; Blumhagen, R. Z.; Westrich, J. A.; Meyers, M. E.; Warren, C. J.; Siska, C.; Raben, D.; Kechris, K. J.; Pyeon, D.

10.1101/132902 — immunology — Posted on 2017-05-01

1300 FORKS: Finding Orderings Robustly using K-means and Steiner trees

Sharma, M.; Li, H.; Sengupta, D.; Prabhakar, S.; Jayadeva, J.

10.1101/132811 — bioinformatics — Posted on 2017-05-01

1301 Mutual Information Estimation For Transcriptional Regulatory Network Inference

Ish-Horowicz, J.; Reid, J.

10.1101/132647 — genetics — Posted on 2017-05-01

1302 European Admixture In Chinchorro DNA

Smith, R.

10.1101/132555 — genetics — Posted on 2017-05-01

1303 Modeling Zero-Inflated Count Data With glmmTMB

Brooks, M. E.; Kristensen, K.; van Benthem, K. J.; Magnusson, A.; Berg, C. W.; Nielsen, A.; Skaug, H. J.; Maechler, M.; Bolker, B. M.

10.1101/132753 — ecology — Posted on 2017-05-01

1304 Identifying differential isoform abundance with RATs: a universal tool and a warning

Froussios, K.; Mourao, K.; Schurch, N. J.; Barton, G. J.

10.1101/132761 — bioinformatics — Posted on 2017-05-01

1305 Widespread Inter-Chromosomal Epistasis Regulates Glucose Homeostasis And Gene Expression

Chen, A.; Yang, L.; Williams, S. M.; Morris, N.; Buchner, D. A.

10.1101/132175 — genetics — Posted on 2017-05-01

1306 Deletion Of EP4 In S100a4-Lineage Cells Reduces Scar Tissue Formation During Early But Not Later Stages Of Tendon Healing

Ackerman, J. E.; Best, K. T.; O'Keefe, R. J.; Loiselle, A.

10.1101/132860 — cell biology — Posted on 2017-05-01

1307 Pharmacological inhibition of the DNA damage checkpoint prevents radiation-induced oocyte death

Rinaldi, V. D.; Hsieh, K.; Munroe, R.; Bolcun-Filas, E.; Schimenti, J. C.

10.1101/132779 — cancer biology — Posted on 2017-05-01

1308 A horizontally transferred autonomous Helitron became a full polydnavirus segment in Cotesia vestalis

Heringer, P.; Dias, G. B.; Kuhn, G. C. S.

10.1101/132399 — genomics — Posted on 2017-05-01

1309 On The Peopling Of The Americas: Molecular Evidence For The Paleoamerican And The Solutrean Models

Yuan, D.; Huang, S.

10.1101/130989 — evolutionary biology — Posted on 2017-05-01

1310 Analysis of copy number variants on chromosome 21 in Down syndrome-associated congenital heart defects

Rambo-Martin, B. L.; Mulle, J. G.; Cutler, D. J.; Bean, L. J. H.; Rosser, T. C.; Dooley, K. J.; Cua, C.; Capone, G.; Maslen, C. L.; Reeves, R. H.; Sherman, S. L.; Zwick, M. E.

10.1101/093583 — genomics — Posted on 2017-05-01

1311 A High Resolution Atlas Of Gene Expression In The Domestic Sheep (Ovis aries)

Clark, E. L.; Bush, S. J.; McCulloch, M. E. B.; Farquhar, I. L.; Young, R.; Lefevre, L.; Pridans, C.; Tsang, H.-G.; Watson, M.; Whitelaw, B.; Freeman, T.; Summers, K. M.; Archibald, A. L.; Hume, D. A.