Channel:  ENCODE

143 Articles

Improving the informativeness of Mendelian disease-derived pathogenicity scores for common disease
Samuel S. Kim, Kushal K. Dey, Omer Weissbrod, Carla Marquez-Luna, Steven Gazal, Alkes L. Price
10.1101/2020.01.02.890657 — Posted: 2020-07-09
Atlas and developmental dynamics of mouse DNase I hypersensitive sites
Breeze, C. E., Lazar, J., Mercer, T., Halow, J., Washington, I., Lee, K., Ibarrientos, S., Castillo, A., Neri, F., Haugen, E., Rynes, E., Reynolds, A., Bates, D., Diegel, M., Dunn, D., Kaul, R., Sandstrom, R., Meuleman, W., Bender, M. A., Groudine, M., Stamatoyannopoulos, J. A.
10.1101/2020.06.26.172718 — Posted: 2020-06-28
Exploring Chromosomal Structural Heterogeneity AcrossMultiple Cell Lines
Cheng, R. R., Contessoto, V., Aiden, E. L., Wolynes, P. G., Di Pierro, M., Onuchic, J. N.
10.1101/2020.03.21.001917 — Posted: 2020-06-21
Detecting sample swaps in diverse NGS data types using linkage disequilibrium
Javed, N. M., Farjoun, Y., Fennell, T. J., Epstein, C. B., Bernstein, B. E., Shoresh, N.
10.1101/2020.03.15.992750 — Posted: 2020-06-21
Swan: a library for the analysis and visualization of long-read transcriptomes
Reese, F., Mortazavi, A.
10.1101/2020.06.09.143024 — Posted: 2020-06-10
DiNeR: a Differential Graphical Model for analysis of co-regulation Network Rewiring
Zhang, J., Liu, J., Lee, D., Lou, S., Chen, Z., Gursoy, G., Gerstein, M.
10.1101/2020.05.29.124164 — Posted: 2020-05-30
LDpred-funct: incorporating functional priors improves polygenic prediction accuracy in UK Biobank and 23andMe data sets
Marquez-Luna, C., Gazal, S., Loh, P.-R., Kim, S. S., Furlotte, N., Auton, A., 23andMe Research Team, , Price, A. L.
10.1101/375337 — Posted: 2020-05-13
HCR-FlowFISH: A flexible CRISPR screening method to identify cis-regulatory elements and their target genes
Reilly, S. K., Gosai, S. J., Guiterrez, A., Ulirsch, J. C., Kanai, M., Berenzy, D., Kales, S., Butler, G. B., Gladden-Young, A., Finucane, H. K., Sabeti, P. C., Tewhey, R.
10.1101/2020.05.11.078675 — Posted: 2020-05-12
Dissecting the regulatory activity and sequence content of loci with exceptional numbers of transcription factor associations
Ramaker, R. C., Hardigan, A. A., Goh, S.-T., Partridge, E. C., Wold, B., Cooper, S. J., Myers, R. M.
10.1101/2019.12.21.885830 — Posted: 2020-05-10
Epigenome-based Splicing Prediction using a Recurrent Neural Network
Lee, D., Zhang, J., Liu, J., Gerstein, M.
10.1101/2020.02.03.932251 — Posted: 2020-05-06

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