Channel:  ENCODE

143 Articles

High-throughput single-cell chromatin accessibility CRISPR screens enable unbiased identification of regulatory networks in cancer
Pierce, S. E., Granja, J. M., Greenleaf, W. J.
10.1101/2020.11.02.364265 — Posted: 2020-11-02
HiC-DC+: systematic 3D interaction calls and differential analysis for Hi-C and HiChIP
Sahin, M., Wong, W., Zhan, Y., Van Deynze, K., Koche, R., Leslie, C. S.
10.1101/2020.10.11.335273 — Posted: 2020-10-11
Cohesin depleted cells rebuild functional nuclear compartments after endomitosis
Cremer, M., Brandstetter, K., Maiser, A., Rao, S. S., Schmid, V., Guirao-Ortiz, M., Mitra, N., Mamberti, S., Klein, K. N., Gilbert, D. M., Leonhardt, H., Cardoso, M. C., Lieberman Aiden, E., Harz, H., Cremer, T.
10.1101/816611 — Posted: 2020-09-14
Higher Native Peruvian ancestry proportion is associated with tuberculosis progression risk
Asgari, S., Luo, Y., Slowikowski, K., Huang, C.-C., Calderon, R., Jimenez, J., Yataco, R., Contreras, C., Galea, J. T., Lecca, L., Jones, D., Moody, D. B., Murray, M. B., Raychaudhuri, S.
10.1101/2020.09.09.20191437 — Posted: 2020-09-11
Population-specific causal disease effect sizes in functionally important regions impacted by selection
Shi, H., Gazal, S., Kanai, M., Koch, E. M., Schoech, A. P., Siewert, K. M., Kim, S. S., Luo, Y., Amariuta, T., Huang, H., Okada, Y., Raychaudhuri, S., Sunyaev, S. R., Price, A. L.
10.1101/803452 — Posted: 2020-09-04
Detecting regulatory elements in high-throughput reporter assays
Kim, Y.-S., Jonhson, G. D., Seo, J., Barrera, A., Majoros, W. H., Ochoa, A., Allen, A. S., Reddy, T. E.
10.1101/2020.08.07.241901 — Posted: 2020-08-07
IFN-γ and TNF-α drive a CXCL10+ CCL2+ macrophage phenotype expanded in severe COVID-19 and other diseases with tissue inflammation
Zhang, F., Mears, J. R., Shakib, L., Beynor, J. I., Shanaj, S., Korsunsky, I., Nathan, A., Accelerating Medicines Partnership Rheumatoid Arthritis and Systemic Lupus Erythematosus, , Donlin, L. T., Raychaudhuri, S.
10.1101/2020.08.05.238360 — Posted: 2020-08-05
Zero-shot imputations across species are enabled through joint modeling of human and mouse epigenomics
Schreiber, J., Hegde, D., Noble, W. S.
10.1101/801183 — Posted: 2020-07-24
A high-resolution HLA reference panel capturing global population diversity enables multi-ethnic fine-mapping in HIV host response
Luo, Y., Kanai, M., Choi, W., Li, X., Yamamoto, K., Ogawa, K., Gutierrez-Arcelus, M., Gregersen, P. K., Stuart, P. E., Elder, J. T., Fellay, J., Carrington, M., Haas, D. W., Guo, X., Palmer, N. D., Chen, Y.-D. I., Rotter, J. I., Taylor, K. D., Rich, S., Correa, A., Wilson, J. G., Kathiresan, S., Cho, M., Metspalu, A., Esko, T., Okada, Y., Han, B., NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, , Mclaren, P. J., Raychaudhuri, S.
10.1101/2020.07.16.20155606 — Posted: 2020-07-18
The changing mouse embryo transcriptome at whole tissue and single-cell resolution
Peng He, Brian A Williams, Diane Trout, Georgi K Marinov, Henry Amrhein, Libera Berghella, Say-Tar Goh, Ingrid Plajzer-Frick, Veena Afzal, Len A Pennacchio, Diane E Dickel, Axel Visel, Bing Ren, Ross C Hardison, Yu Zhang, Barbara J Wold
10.1101/2020.06.14.150599 — Posted: 2020-07-12

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