Channel: Human Pangenome Reference Consortium (HPRC)

166 Articles

Expression spectrum of TE-derived transcripts in human adult tissues

Miao, B., Zhang, B., WU, T. P., Luo, X., Ademovic, A., Yang, Y.

10.1101/2025.03.29.646092 — Posted: 2025-04-03

Machine Learning-Based Identification of Survival-Associated CpG Biomarkers in Pancreatic Ductal Adenocarcinoma

Zhang, B., Zhang, Y., Zhao, Y.

10.1101/2025.03.29.646090 — Posted: 2025-04-01

Whole-Genome Sequencing Reveals Individual and Cohort Level Insights into Chromosome 9p Syndromes

Wang, Y., Sams, E. I., Slaugh, R., Crocker, S., Hurtado, E. C., Tracy, S., Hou, Y.-C. C., Markovic, C., Valle, K., Tate, V., Belhassan, K., Appelbaum, E., Akinwe, T., Tzovenos, R. S., Cao, Y., Neilson, A., Liu, Y., Jensen, N., Ghasemi, R., Lindsay, T., Manuel, J., Couteranis, S., Kremitzki, M., Ustanik, J., Antonacci, T., Ng, J. K., Emory, A., Metz, L., DeLuca, T., Lyons, K. N., Sinnwell, T., Thomeczek, B., Wang, K., Sisneros, N., Muraleedharan, M., Kethireddy, A., Corbo, M., Gowda, H., King, K., Gurnett, C. A., Dutcher, S. K., Gooch, C., Li, Y. E., Mitchell, M. W., Peterson, K. A., Horani, A.

10.1101/2025.03.28.25324850 — Posted: 2025-03-30

Linking molecular pathways and islet cell dysfunction in human type 1 diabetes

dos Santos, T., Dai, X. Q., Jones, R. C., Spigelman, A. F., Mummey, H. M., Ewald, J. D., Ellis, C. E., Lyon, J. G., Smith, N., Bautista, A., Manning Fox, J. E., Neff, N. F., Detweiler, A., Tan, M., Arrojo e Drigo, R., Xia, J., Camunas-Soler, J., Gaulton, K. J., Quake, S. R., MacDonald, P. E.

10.1101/2025.02.20.639325 — Posted: 2025-02-21

The impact of ambient contamination on demultiplexing methods for single-nucleus multiome experiments

Li, T., Alvarez, M., Liu, C., Abuhanna, K., Sun, Y., Ernst, J., Plath, K., Balliu, B., Luo, C., Zaitlen, N.

10.1101/2025.02.06.636969 — Posted: 2025-02-08

GenVarLoader: An accelerated dataloader for applying deep learning to personalized genomics

Laub, D., Ho, A., Jaureguy, J., Klie, A., Salem, R. M., McVicker, G., Carter, H.

10.1101/2025.01.15.633240 — Posted: 2025-01-17

Deep topic modeling of spatial transcriptomics in the rheumatoid arthritis synovium identifies distinct classes of ectopic lymphoid structures

Periyakoil, P. K., Smith, M. H., Kshirsagar, M., Ramirez, D., DiCarlo, E. F., Goodman, S. M., Rudensky, A., Donlin, L., Leslie, C. S.

10.1101/2025.01.08.631928 — Posted: 2025-01-10

DNALONGBENCH: A Benchmark Suite for Long-Range DNA Prediction Tasks

Cheng, W., Song, Z., Zhang, Y., Wang, S., Wang, D., Yang, M., Li, L., Ma, J.