Channel:  Human Pangenome Reference Consortium (HPRC)

166 Articles

Pangenome-aware DeepVariant
Asri, M., Chang, P.-C., Mier, J. C., Siren, J., Eskandar, P., Kolesnikov, A., Cook, D. E., Brambrink, L., Hickey, G., Novak, A. M., Dorfman, L., Webster, D. R., Carroll, A., Paten, B., Shafin, K.
10.1101/2025.06.05.657102 — Posted: 2025-06-06
Highly sensitive and scalable time-resolved RNA sequencing in single cells with scNT-seq2
Qiu, Q., Zhang, H., Gao, W., Li, F., Liang, D., Wu, H.
10.1101/2025.06.03.657745 — Posted: 2025-06-03
SNP calling, haplotype phasing and allele-specific analysis with long RNA-seq reads
Huang, N., Human Pangenome Reference Consortium, , Li, H.
10.1101/2025.05.26.656191 — Posted: 2025-05-29
EYKTHYR reveals transcriptional regulators of spatial gene programs
Krieger, S., Haber, E., Ma, J.
10.1101/2025.05.19.654884 — Posted: 2025-05-23
POPARI: Modeling multisample variation in spatial transcriptomics
Alam, S., Zhou, T., Haber, E., Chidester, B., Liu, S., Chen, F., Ma, J.
10.1101/2025.05.08.652741 — Posted: 2025-05-13
Deep dynamical models of single-cell multiomic velocities predict loss-of-function and rescue perturbations in B cells
Karbalayghareh, A., Barisic, D., Chin, C. R., Melnick, A., Leslie, C. S.
10.1101/2025.04.24.650458 — Posted: 2025-04-26
Unified integration of spatial transcriptomics across platforms
Haber, E., Deshpande, A., Ma, J., Krieger, S.
10.1101/2025.03.31.646238 — Posted: 2025-04-21
Genotyping sequence-resolved copy number variationusing pangenomes reveals paralog-specific global diversityand expression divergence of duplicated genes
Ma, W., Chaisson, M.
10.1101/2024.08.11.607269 — Posted: 2025-04-13
STEAMBOAT: Attention-based multiscale delineation of cellular interactions in tissues
Liang, S., Tang, J., Wang, G., Ma, J.
10.1101/2025.04.06.647437 — Posted: 2025-04-10
Integrated single-cell and spatial multiomic analysis reveals widespread reactivation of developmental programs in diseased human hearts
Gao, W., Hu, P., Qiu, Q., Kang, X., Bedi, K., Sasaki, K., Margulies, K., Wu, H.
10.1101/2025.04.01.646460 — Posted: 2025-04-07

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